Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28319.t1 | XP_003606825.2 | 94.2 | 1172 | 55 | 4 | 1 | 1159 | 1 | 1172 | 0.00E+00 | 1978.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28319.t1 | Q14692 | 39.9 | 1254 | 527 | 19 | 32 | 1115 | 32 | 1228 | 3.8e-229 | 796.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28319.t1 | G7JEW4 | 94.2 | 1172 | 55 | 4 | 1 | 1159 | 1 | 1172 | 0.0e+00 | 1978.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049207 | MS.gene28319 | 0.828612 | 8.16E-55 | -1.69E-46 |
| MS.gene049283 | MS.gene28319 | 0.811016 | 8.64E-51 | -1.69E-46 |
| MS.gene049824 | MS.gene28319 | 0.818318 | 2.09E-52 | -1.69E-46 |
| MS.gene049825 | MS.gene28319 | 0.812979 | 3.23E-51 | -1.69E-46 |
| MS.gene050114 | MS.gene28319 | 0.838195 | 3.32E-57 | -1.69E-46 |
| MS.gene050303 | MS.gene28319 | 0.800227 | 1.59E-48 | -1.69E-46 |
| MS.gene050885 | MS.gene28319 | 0.855362 | 6.64E-62 | -1.69E-46 |
| MS.gene051597 | MS.gene28319 | 0.800409 | 1.46E-48 | -1.69E-46 |
| MS.gene051700 | MS.gene28319 | 0.81854 | 1.86E-52 | -1.69E-46 |
| MS.gene05188 | MS.gene28319 | 0.838649 | 2.54E-57 | -1.69E-46 |
| MS.gene051975 | MS.gene28319 | 0.831595 | 1.53E-55 | -1.69E-46 |
| MS.gene052717 | MS.gene28319 | 0.826052 | 3.35E-54 | -1.69E-46 |
| MS.gene053058 | MS.gene28319 | 0.828105 | 1.08E-54 | -1.69E-46 |
| MS.gene053226 | MS.gene28319 | 0.821186 | 4.62E-53 | -1.69E-46 |
| MS.gene053298 | MS.gene28319 | 0.809479 | 1.85E-50 | -1.69E-46 |
| MS.gene053617 | MS.gene28319 | 0.841541 | 4.46E-58 | -1.69E-46 |
| MS.gene053786 | MS.gene28319 | 0.800081 | 1.70E-48 | -1.69E-46 |
| MS.gene053963 | MS.gene28319 | 0.819157 | 1.35E-52 | -1.69E-46 |
| MS.gene054222 | MS.gene28319 | 0.801479 | 8.83E-49 | -1.69E-46 |
| MS.gene054576 | MS.gene28319 | 0.802691 | 4.98E-49 | -1.69E-46 |
| MS.gene055603 | MS.gene28319 | 0.84401 | 9.85E-59 | -1.69E-46 |
| MS.gene055808 | MS.gene28319 | 0.832152 | 1.11E-55 | -1.69E-46 |
| MS.gene056091 | MS.gene28319 | 0.838013 | 3.70E-57 | -1.69E-46 |
| MS.gene056403 | MS.gene28319 | 0.974942 | 4.72E-139 | -1.69E-46 |
| MS.gene05659 | MS.gene28319 | 0.850214 | 1.96E-60 | -1.69E-46 |
| MS.gene056605 | MS.gene28319 | 0.981549 | 7.35E-153 | -1.69E-46 |
| MS.gene056638 | MS.gene28319 | 0.807092 | 5.98E-50 | -1.69E-46 |
| MS.gene05689 | MS.gene28319 | 0.88634 | 3.72E-72 | -1.69E-46 |
| MS.gene056986 | MS.gene28319 | 0.843496 | 1.35E-58 | -1.69E-46 |
| MS.gene057094 | MS.gene28319 | 0.801952 | 7.06E-49 | -1.69E-46 |
| MS.gene057360 | MS.gene28319 | 0.804667 | 1.94E-49 | -1.69E-46 |
| MS.gene05781 | MS.gene28319 | 0.802476 | 5.51E-49 | -1.69E-46 |
| MS.gene058126 | MS.gene28319 | 0.814425 | 1.55E-51 | -1.69E-46 |
| MS.gene058908 | MS.gene28319 | 0.818852 | 1.58E-52 | -1.69E-46 |
| MS.gene058911 | MS.gene28319 | 0.823279 | 1.51E-53 | -1.69E-46 |
| MS.gene059830 | MS.gene28319 | 0.810224 | 1.28E-50 | -1.69E-46 |
| MS.gene059901 | MS.gene28319 | -0.819046 | 1.43E-52 | -1.69E-46 |
| MS.gene059935 | MS.gene28319 | 0.862747 | 4.07E-64 | -1.69E-46 |
| MS.gene06001 | MS.gene28319 | 0.813054 | 3.11E-51 | -1.69E-46 |
| MS.gene06011 | MS.gene28319 | 0.841616 | 4.27E-58 | -1.69E-46 |
| MS.gene060586 | MS.gene28319 | 0.810591 | 1.07E-50 | -1.69E-46 |
| MS.gene060763 | MS.gene28319 | 0.841223 | 5.41E-58 | -1.69E-46 |
| MS.gene060830 | MS.gene28319 | 0.9072 | 6.55E-81 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene28319 | MS.gene65479 | PPI |
| MS.gene028153 | MS.gene28319 | PPI |
| MS.gene28319 | MS.gene60517 | PPI |
| MS.gene063209 | MS.gene28319 | PPI |
| MS.gene42236 | MS.gene28319 | PPI |
| MS.gene04159 | MS.gene28319 | PPI |
| MS.gene28319 | MS.gene82426 | PPI |
| MS.gene005792 | MS.gene28319 | PPI |
| MS.gene28319 | MS.gene26077 | PPI |
| MS.gene28319 | MS.gene89206 | PPI |
| MS.gene02090 | MS.gene28319 | PPI |
| MS.gene04336 | MS.gene28319 | PPI |
| MS.gene28319 | MS.gene09988 | PPI |
| MS.gene28319 | MS.gene063568 | PPI |
| MS.gene27648 | MS.gene28319 | PPI |
| MS.gene28319 | MS.gene74552 | PPI |
| MS.gene03126 | MS.gene28319 | PPI |
| MS.gene05689 | MS.gene28319 | PPI |
| MS.gene070298 | MS.gene28319 | PPI |
| MS.gene28319 | MS.gene83444 | PPI |
| MS.gene003290 | MS.gene28319 | PPI |
| MS.gene029825 | MS.gene28319 | PPI |
| MS.gene28319 | MS.gene52173 | PPI |
| MS.gene68085 | MS.gene28319 | PPI |
| MS.gene75013 | MS.gene28319 | PPI |
| MS.gene28319 | MS.gene29448 | PPI |
| MS.gene017434 | MS.gene28319 | PPI |
| MS.gene28319 | MS.gene053381 | PPI |
| MS.gene28319 | MS.gene023799 | PPI |
| MS.gene28319 | MS.gene72768 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28319.t1 | MTR_4g068150 | 97.014 | 1172 | 22 | 4 | 1 | 1159 | 1 | 1172 | 0.0 | 2336 |
| MS.gene28319.t1 | MTR_4g068150 | 97.172 | 1167 | 25 | 4 | 1 | 1159 | 1 | 1167 | 0.0 | 2331 |
| MS.gene28319.t1 | MTR_3g115250 | 22.449 | 196 | 147 | 3 | 757 | 948 | 555 | 749 | 2.69e-12 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28319.t1 | AT1G06720 | 61.130 | 1204 | 392 | 19 | 1 | 1159 | 1 | 1173 | 0.0 | 1330 |
| MS.gene28319.t1 | AT1G06720 | 60.652 | 1197 | 381 | 20 | 1 | 1159 | 1 | 1145 | 0.0 | 1310 |
| MS.gene28319.t1 | AT1G06720 | 58.710 | 930 | 317 | 17 | 1 | 885 | 1 | 908 | 0.0 | 984 |
| MS.gene28319.t1 | AT1G42440 | 23.629 | 237 | 161 | 5 | 758 | 989 | 556 | 777 | 5.36e-15 | 80.5 |
Find 248 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCTTTCTCATCCCATTTC+TGG | 0.104061 | 4.4:-39045541 | None:intergenic |
| GATAGAAAAGTCACACTTTA+TGG | 0.166733 | 4.4:+39042710 | MS.gene28319:CDS |
| AGCTTTGTGAAGTGCATTTC+TGG | 0.182438 | 4.4:-39045612 | None:intergenic |
| CATCCAACAGAAACAATAAT+TGG | 0.191556 | 4.4:-39047700 | None:intergenic |
| TAAAGAGAATCTTTGTTTAC+AGG | 0.210381 | 4.4:-39048561 | None:intergenic |
| TGCATTGCCTTGCTATGTTT+TGG | 0.225796 | 4.4:+39047806 | MS.gene28319:CDS |
| GAAGAATAAGCAAAAGCTTT+AGG | 0.235051 | 4.4:-39040582 | None:intergenic |
| TGATCGAGTATTTGGTATTC+TGG | 0.235507 | 4.4:-39044011 | None:intergenic |
| TCCTTTCGTTATCGTTGTTC+AGG | 0.238567 | 4.4:+39040701 | MS.gene28319:CDS |
| AAACCTGATACAATCGTAAT+TGG | 0.241471 | 4.4:-39040907 | None:intergenic |
| AACAGTTCTCATTCCTTTCC+AGG | 0.256293 | 4.4:-39048505 | None:intergenic |
| ATGCTCCCATGTCTGGGGTT+GGG | 0.268927 | 4.4:+39043504 | MS.gene28319:CDS |
| TTCTCATTCCTTTCCAGGTC+TGG | 0.269017 | 4.4:-39048500 | None:intergenic |
| ATAGCTGGAGTGGGTGATTA+TGG | 0.269741 | 4.4:+39043392 | MS.gene28319:CDS |
| GTCAATATAGTTACTTTCAT+TGG | 0.272071 | 4.4:-39046669 | None:intergenic |
| AAGAATAAGCAAAAGCTTTA+GGG | 0.276080 | 4.4:-39040581 | None:intergenic |
| ATCGTGCTTCTTCTTGGATT+TGG | 0.278569 | 4.4:-39040526 | None:intergenic |
| AACGACTCAAACACCGGTTT+TGG | 0.282639 | 4.4:+39042093 | MS.gene28319:CDS |
| ATCGCCATCGTGCTTCTTCT+TGG | 0.287530 | 4.4:-39040532 | None:intergenic |
| TGCTCCCATGTCTGGGGTTG+GGG | 0.289845 | 4.4:+39043505 | MS.gene28319:CDS |
| AGCATATGCCCAAGCGAAAA+AGG | 0.290691 | 4.4:+39048794 | MS.gene28319:CDS |
| CCACTTACTTTCCATGAATA+AGG | 0.290932 | 4.4:-39042157 | None:intergenic |
| GGTCCAATTACGATTGTATC+AGG | 0.292058 | 4.4:+39040904 | MS.gene28319:CDS |
| ACCAATGGATTGAACTTTCT+AGG | 0.296955 | 4.4:-39048724 | None:intergenic |
| GGGGTTCTTACTCATCTTGA+TGG | 0.302331 | 4.4:+39042035 | MS.gene28319:CDS |
| CCATTTCTGGCTCATAAGTT+TGG | 0.304849 | 4.4:-39045528 | None:intergenic |
| CCCATTATTGATCGTAGTTA+TGG | 0.308340 | 4.4:+39040669 | MS.gene28319:CDS |
| ACCATAACTACGATCAATAA+TGG | 0.311402 | 4.4:-39040670 | None:intergenic |
| TCGAACAGTTAGTGGGATTA+GGG | 0.311587 | 4.4:+39048201 | MS.gene28319:CDS |
| CATCATGAACCTCCAATCTT+AGG | 0.315269 | 4.4:-39046883 | None:intergenic |
| TTTAGCTCCGTCATATATTT+CGG | 0.320847 | 4.4:-39042117 | None:intergenic |
| TTATTTGCATGCACTTGTTC+AGG | 0.325475 | 4.4:-39042680 | None:intergenic |
| TACTAATAATTCGACCTCTA+TGG | 0.334259 | 4.4:+39045145 | MS.gene28319:CDS |
| TGATCCCTACCATCCAATAT+TGG | 0.339343 | 4.4:+39046931 | MS.gene28319:CDS |
| GACTTTGAAGATTTAGAAAC+AGG | 0.339858 | 4.4:+39045674 | MS.gene28319:CDS |
| TACTTATCAGGCCTTATTCA+TGG | 0.341070 | 4.4:+39042146 | MS.gene28319:CDS |
| TATGGTTTAGCTCATGTAAC+TGG | 0.343189 | 4.4:+39043410 | MS.gene28319:CDS |
| CAAAGGAGAAAGGCAATCTT+TGG | 0.349628 | 4.4:+39044276 | MS.gene28319:CDS |
| GAATCTTTGTTTACAGGTAT+AGG | 0.353294 | 4.4:-39048555 | None:intergenic |
| TTCGAACAGTTAGTGGGATT+AGG | 0.371814 | 4.4:+39048200 | MS.gene28319:CDS |
| GGAAATTAGGTGCACATAGC+TGG | 0.372007 | 4.4:+39043377 | MS.gene28319:intron |
| CTTCTTATAGACGGAAGTTA+TGG | 0.372780 | 4.4:+39041823 | MS.gene28319:CDS |
| GACCCAATTATTGTTTCTGT+TGG | 0.372854 | 4.4:+39047697 | MS.gene28319:CDS |
| TAATTGGGTCTCTAGTCTTC+AGG | 0.377213 | 4.4:-39047684 | None:intergenic |
| TACTCATCTTGATGGATTCA+AGG | 0.378728 | 4.4:+39042043 | MS.gene28319:CDS |
| ATCATGCCATTGATATCATT+CGG | 0.379358 | 4.4:-39041769 | None:intergenic |
| CCTTTCCAGGTCTGGTCCCT+AGG | 0.381198 | 4.4:-39048492 | None:intergenic |
| GATAGTGAAGAAAATCAAAT+TGG | 0.386203 | 4.4:+39048084 | MS.gene28319:CDS |
| AGTAGCGAGGATGAAGAAAA+TGG | 0.390152 | 4.4:+39045182 | MS.gene28319:CDS |
| GAGGTAGAAGGCTTCCGAAC+AGG | 0.392205 | 4.4:+39046854 | MS.gene28319:CDS |
| TCAATATAGTTACTTTCATT+GGG | 0.392623 | 4.4:-39046668 | None:intergenic |
| TATGCTCCCATGTCTGGGGT+TGG | 0.393154 | 4.4:+39043503 | MS.gene28319:CDS |
| AGAGGAAGAGGAAGAGGAAG+AGG | 0.394447 | 4.4:+39044731 | MS.gene28319:CDS |
| AGAGGAAGAGGAAGAGGAAG+AGG | 0.394447 | 4.4:+39044737 | MS.gene28319:CDS |
| CCAAACTTATGAGCCAGAAA+TGG | 0.394974 | 4.4:+39045528 | MS.gene28319:CDS |
| CCAAATTTCCGGACACAAAA+CGG | 0.400183 | 4.4:-39045580 | None:intergenic |
| GAGGAAGATGAAGATGTCTA+TGG | 0.400758 | 4.4:+39045650 | MS.gene28319:CDS |
| CATATATTTCGGTCCAAAAC+CGG | 0.401026 | 4.4:-39042106 | None:intergenic |
| TTTCGCTTGGGCATATGCTT+AGG | 0.403172 | 4.4:-39048790 | None:intergenic |
| TGAAGTTTCATCCTCTATCT+TGG | 0.406214 | 4.4:+39042606 | MS.gene28319:CDS |
| CCTTTCGTTATCGTTGTTCA+GGG | 0.406244 | 4.4:+39040702 | MS.gene28319:CDS |
| GGCTGTCGTTTGATGATAGA+AGG | 0.413112 | 4.4:+39048815 | MS.gene28319:CDS |
| CAATTATTGTTTCTGTTGGA+TGG | 0.415239 | 4.4:+39047701 | MS.gene28319:CDS |
| AGTTTGATGCAACTTGTGTA+TGG | 0.417507 | 4.4:+39045116 | MS.gene28319:CDS |
| TTCAGAAGAGGAAGAGGAAG+AGG | 0.419894 | 4.4:+39044725 | MS.gene28319:CDS |
| CAGGAAAGGAAAGGGATGTA+GGG | 0.424682 | 4.4:+39043968 | MS.gene28319:intron |
| CCTACCATCCAATATTGGTT+GGG | 0.425632 | 4.4:+39046936 | MS.gene28319:CDS |
| GAAGCCTTCTACCTCTAATC+TGG | 0.428774 | 4.4:-39046846 | None:intergenic |
| GTTTCCATCATCATTTGTAA+TGG | 0.431620 | 4.4:-39044217 | None:intergenic |
| GTAATTGGACCACGAACTTC+AGG | 0.432728 | 4.4:-39040892 | None:intergenic |
| CCATAACTACGATCAATAAT+GGG | 0.435279 | 4.4:-39040669 | None:intergenic |
| ACAGGAAAGGAAAGGGATGT+AGG | 0.435314 | 4.4:+39043967 | MS.gene28319:intron |
| TCATTGCCAGTATCTTCCTC+TGG | 0.435494 | 4.4:-39046617 | None:intergenic |
| GCTCATAAGTTTGGCACACT+TGG | 0.436298 | 4.4:-39045519 | None:intergenic |
| AGATCCTCAATAGCATAAAC+TGG | 0.440288 | 4.4:-39047742 | None:intergenic |
| CTTGAAGTAGCTCGGTTTGA+AGG | 0.441046 | 4.4:+39048169 | MS.gene28319:CDS |
| TATTGAACTTGTCTTGTGTC+CGG | 0.443879 | 4.4:-39049376 | None:intergenic |
| GAAGGAAGAGGGCATGGATC+AGG | 0.447359 | 4.4:-39043437 | None:intergenic |
| TTCCCATCCCTATGTTCTTG+TGG | 0.449284 | 4.4:+39042634 | MS.gene28319:CDS |
| TCAGTTAATGAAAGCTGAAA+AGG | 0.450265 | 4.4:+39048897 | MS.gene28319:CDS |
| TAGCATAAACTGGTGTTGTC+TGG | 0.456177 | 4.4:-39047732 | None:intergenic |
| TCATGCCATTGATATCATTC+GGG | 0.457643 | 4.4:-39041768 | None:intergenic |
| GATACCAGATTAGAGGTAGA+AGG | 0.458983 | 4.4:+39046842 | MS.gene28319:CDS |
| GCAAGGCAATGCATGTGTTC+TGG | 0.459495 | 4.4:-39047796 | None:intergenic |
| ATAGGATTCAGAAGAGGAAG+AGG | 0.460642 | 4.4:+39044719 | MS.gene28319:intron |
| TGATGAGGATACCAGATTAG+AGG | 0.460675 | 4.4:+39046835 | MS.gene28319:CDS |
| CGTTGTTCAGGGTCCTCCCC+AGG | 0.470724 | 4.4:+39040713 | MS.gene28319:CDS |
| CAAGAAAACAGCACTTATCA+AGG | 0.472027 | 4.4:+39048129 | MS.gene28319:CDS |
| CCACCTATGTCGCTTTAACC+TGG | 0.475946 | 4.4:-39047650 | None:intergenic |
| AACACCAGTTTATGCTATTG+AGG | 0.476344 | 4.4:+39047738 | MS.gene28319:CDS |
| ATCCAACAGAAACAATAATT+GGG | 0.476676 | 4.4:-39047699 | None:intergenic |
| AAGATTTGCCTGTAGTGACT+TGG | 0.479282 | 4.4:-39048752 | None:intergenic |
| TCAGACTTTATCCAACAATC+AGG | 0.480881 | 4.4:+39047867 | MS.gene28319:CDS |
| ATCTTAGGTATGTCCCTGTT+CGG | 0.481890 | 4.4:-39046868 | None:intergenic |
| AGCTAATACTGAAGAGGAAG+AGG | 0.484200 | 4.4:+39045631 | MS.gene28319:CDS |
| GGTCTAGGGGAGGAAAATGT+TGG | 0.484771 | 4.4:+39046965 | MS.gene28319:CDS |
| CATCTGTCTTATAATTCTCA+TGG | 0.484912 | 4.4:-39045703 | None:intergenic |
| CATGGGTTCCCAAAGGTCAT+GGG | 0.485283 | 4.4:+39042014 | MS.gene28319:CDS |
| CAAACTTATGAGCCAGAAAT+GGG | 0.485737 | 4.4:+39045529 | MS.gene28319:CDS |
| AACAGGGACATACCTAAGAT+TGG | 0.486630 | 4.4:+39046871 | MS.gene28319:CDS |
| GCAAAGGCGACTGCAGTTTG+TGG | 0.486689 | 4.4:+39041741 | MS.gene28319:CDS |
| CCCTACCATCCAATATTGGT+TGG | 0.487731 | 4.4:+39046935 | MS.gene28319:CDS |
| TCATGGGTTCCCAAAGGTCA+TGG | 0.490364 | 4.4:+39042013 | MS.gene28319:CDS |
| TCATGATGTTCCCTGTGAAA+TGG | 0.490845 | 4.4:+39046898 | MS.gene28319:CDS |
| ACCTAGAAAGTTCAATCCAT+TGG | 0.491189 | 4.4:+39048723 | MS.gene28319:CDS |
| AAGTGCTAGATCAGCATACT+TGG | 0.493596 | 4.4:-39041800 | None:intergenic |
| CTTCTGATCTTGAAGTAGCT+CGG | 0.496458 | 4.4:+39048161 | MS.gene28319:CDS |
| TGGGAAGTTCGCCAAGATAG+AGG | 0.496623 | 4.4:-39042617 | None:intergenic |
| CAAAACTTGCCTGAAGTTCG+TGG | 0.497159 | 4.4:+39040883 | MS.gene28319:CDS |
| GGCACACTTGGAACAATCCT+CGG | 0.497625 | 4.4:-39045507 | None:intergenic |
| ATGGGTTCCCAAAGGTCATG+GGG | 0.498872 | 4.4:+39042015 | MS.gene28319:CDS |
| ATCAGCATCGTTGACAGCCA+TGG | 0.499681 | 4.4:-39040454 | None:intergenic |
| AAAACGATCCACAAGAACAT+AGG | 0.500879 | 4.4:-39042642 | None:intergenic |
| AGAGAGAGCAAAGGAGGAGC+TGG | 0.501527 | 4.4:+39049313 | MS.gene28319:CDS |
| ACGAGAGATGGACTGGATGA+TGG | 0.501622 | 4.4:+39045473 | MS.gene28319:CDS |
| GTGAAGAAAATCAAATTGGT+TGG | 0.503295 | 4.4:+39048088 | MS.gene28319:CDS |
| AGAGGAAGAGGAAGATGAAG+AGG | 0.505144 | 4.4:+39044749 | MS.gene28319:CDS |
| AACAGCAACTATTCCAGTGT+TGG | 0.506794 | 4.4:-39047845 | None:intergenic |
| CTACCATCCAATATTGGTTG+GGG | 0.508028 | 4.4:+39046937 | MS.gene28319:CDS |
| CACGATGGCGATGCCGATGA+TGG | 0.508318 | 4.4:+39040543 | MS.gene28319:CDS |
| GAGACACCAGAGGAAGATAC+TGG | 0.510268 | 4.4:+39046611 | MS.gene28319:intron |
| GGGTTGTTCACGATGGAACT+TGG | 0.510287 | 4.4:-39046648 | None:intergenic |
| ACAGCAACTATTCCAGTGTT+GGG | 0.514456 | 4.4:-39047844 | None:intergenic |
| ATGCTTCTGAATCATCTGAC+GGG | 0.515624 | 4.4:+39044181 | MS.gene28319:CDS |
| GTGTTTGACAGGAAAGGAAA+GGG | 0.517376 | 4.4:+39043960 | MS.gene28319:intron |
| GCAGCTATTCGAACAGTTAG+TGG | 0.517998 | 4.4:+39048193 | MS.gene28319:CDS |
| TGTGTTTGACAGGAAAGGAA+AGG | 0.520274 | 4.4:+39043959 | MS.gene28319:intron |
| GGGAAATATTTCAAAGTGGA+AGG | 0.520823 | 4.4:+39045055 | MS.gene28319:CDS |
| CGAAACAACGACTCAAACAC+CGG | 0.521163 | 4.4:+39042087 | MS.gene28319:CDS |
| GATGCCATTACAAATGATGA+TGG | 0.522389 | 4.4:+39044213 | MS.gene28319:CDS |
| CTCAACAACAACTGCAGTTG+CGG | 0.522954 | 4.4:-39048044 | None:intergenic |
| GGTGATTCCCAAGTCACTAC+AGG | 0.523495 | 4.4:+39048744 | MS.gene28319:CDS |
| TTGCATAATCTGACCATCAT+CGG | 0.524046 | 4.4:-39040556 | None:intergenic |
| AAACAAAGATTCTCTTTACA+AGG | 0.525167 | 4.4:+39048566 | MS.gene28319:CDS |
| GGATAATAATGAAATCGATT+CGG | 0.525840 | 4.4:+39044158 | MS.gene28319:CDS |
| TTAGTAACCTTTGCTCGTCA+TGG | 0.526233 | 4.4:-39043612 | None:intergenic |
| AAGATCCCCAACCCCAGACA+TGG | 0.531653 | 4.4:-39043510 | None:intergenic |
| AACTCTGCCATGACGAGCAA+AGG | 0.531667 | 4.4:+39043605 | MS.gene28319:CDS |
| TGACAACAGCATTACAGCCT+AGG | 0.532035 | 4.4:+39048475 | MS.gene28319:CDS |
| AAAGTGCTCAACCATTTCAC+AGG | 0.532879 | 4.4:-39046909 | None:intergenic |
| TGTCTCGTCTTTCTTCTCTC+CGG | 0.534473 | 4.4:-39049349 | None:intergenic |
| AAGAAAGACGAGACAAATAC+CGG | 0.536320 | 4.4:+39049357 | MS.gene28319:CDS |
| TTCAAAGTGGAAGGAGTCGT+TGG | 0.536746 | 4.4:+39045064 | MS.gene28319:CDS |
| GCTCACAGAACTCGTCAAGC+TGG | 0.537860 | 4.4:+39040489 | MS.gene28319:CDS |
| TACAGCCTAGGGACCAGACC+TGG | 0.538152 | 4.4:+39048487 | MS.gene28319:CDS |
| GATCAATAATGGGAAGATGA+AGG | 0.538737 | 4.4:-39040659 | None:intergenic |
| GGCTGTAATGCTGTTGTCAA+CGG | 0.539125 | 4.4:-39048471 | None:intergenic |
| TTTCAGCTTTCATTAACTGA+AGG | 0.539422 | 4.4:-39048894 | None:intergenic |
| GTTTGATGATAGAAGGCAAA+AGG | 0.539424 | 4.4:+39048822 | MS.gene28319:CDS |
| AGATTTGCCTGTAGTGACTT+GGG | 0.540542 | 4.4:-39048751 | None:intergenic |
| TATGCTATTGAGGATCTCAA+TGG | 0.540839 | 4.4:+39047748 | MS.gene28319:CDS |
| AGGCCAGGTTAAAGCGACAT+AGG | 0.541597 | 4.4:+39047647 | MS.gene28319:intron |
| GTGTTGGCAGACCTGATTGT+TGG | 0.541865 | 4.4:-39047878 | None:intergenic |
| CAACTTGAGTCCATGCTCGC+AGG | 0.542329 | 4.4:-39048428 | None:intergenic |
| CTACAGCAATATACGAGAGA+TGG | 0.543189 | 4.4:+39045461 | MS.gene28319:intron |
| CAGCTATTCGAACAGTTAGT+GGG | 0.545097 | 4.4:+39048194 | MS.gene28319:CDS |
| AAAGGAAAGGGATGTAGGGG+TGG | 0.551911 | 4.4:+39043972 | MS.gene28319:CDS |
| AAGGTTGCAAAAGAAGAGAT+AGG | 0.552377 | 4.4:+39048315 | MS.gene28319:intron |
| AAACGATCCACAAGAACATA+GGG | 0.555370 | 4.4:-39042641 | None:intergenic |
| CCCAACCAATATTGGATGGT+AGG | 0.555592 | 4.4:-39046936 | None:intergenic |
| GCAATATACGAGAGATGGAC+TGG | 0.557369 | 4.4:+39045466 | MS.gene28319:intron |
| CCTAGGGACCAGACCTGGAA+AGG | 0.557506 | 4.4:+39048492 | MS.gene28319:CDS |
| TTTGTCTTCAAAAGTGCACC+TGG | 0.557720 | 4.4:-39048382 | None:intergenic |
| CAATGGAAGACAAAGGAGAA+AGG | 0.557831 | 4.4:+39044266 | MS.gene28319:CDS |
| AGGTAGAAGGCTTCCGAACA+GGG | 0.558628 | 4.4:+39046855 | MS.gene28319:CDS |
| TTCCTTGCAGAAGATGGCAT+GGG | 0.560946 | 4.4:+39045035 | MS.gene28319:intron |
| GCAGCAGAAGGAAGAGGGCA+TGG | 0.561573 | 4.4:-39043443 | None:intergenic |
| TCACAAAGCTAATACTGAAG+AGG | 0.561617 | 4.4:+39045625 | MS.gene28319:CDS |
| TTTCCTTGCAGAAGATGGCA+TGG | 0.562662 | 4.4:+39045034 | MS.gene28319:intron |
| CTAGCACTTCTTCTTATAGA+CGG | 0.563944 | 4.4:+39041814 | MS.gene28319:CDS |
| CCAACCAATATTGGATGGTA+GGG | 0.564046 | 4.4:-39046935 | None:intergenic |
| TGAAGCAGAGAGAGCAAAGG+AGG | 0.566482 | 4.4:+39049307 | MS.gene28319:CDS |
| CCTCTTGCACCTCCCAACAC+TGG | 0.569525 | 4.4:+39047832 | MS.gene28319:CDS |
| GATGCTTCTGAATCATCTGA+CGG | 0.571809 | 4.4:+39044180 | MS.gene28319:CDS |
| TTGAGTTTAATCACGCTGCA+AGG | 0.573961 | 4.4:+39048062 | MS.gene28319:CDS |
| GTTTGATGCAACTTGTGTAT+GGG | 0.574954 | 4.4:+39045117 | MS.gene28319:CDS |
| GGGAGTTGATAAAGAAGCTG+AGG | 0.575644 | 4.4:+39045751 | MS.gene28319:CDS |
| GGAAAATGTTGGATACATGC+AGG | 0.576051 | 4.4:+39046976 | MS.gene28319:CDS |
| AAGGGTGGGCAAATCAAAGA+AGG | 0.576253 | 4.4:+39048354 | MS.gene28319:CDS |
| GCATGGAAAAGTAGAAACTT+CGG | 0.577267 | 4.4:+39044137 | MS.gene28319:CDS |
| AAATCAAAGAAGGAATTGCC+AGG | 0.578516 | 4.4:+39048364 | MS.gene28319:CDS |
| TACACAAGTTGCATCAAACT+AGG | 0.581851 | 4.4:-39045113 | None:intergenic |
| ATCATTCTCTTCGTCCATAG+AGG | 0.581921 | 4.4:-39045159 | None:intergenic |
| GAGGGCCCCAAAACATAGCA+AGG | 0.586240 | 4.4:-39047813 | None:intergenic |
| TTTGCATGCACTTGTTCAGG+AGG | 0.587833 | 4.4:-39042677 | None:intergenic |
| AACTAGGAGATTTCCGTGCG+AGG | 0.589678 | 4.4:-39045097 | None:intergenic |
| AACACAATCCACACCTGGGG+AGG | 0.595490 | 4.4:-39040726 | None:intergenic |
| AGGAAAGGAAAGGGATGTAG+GGG | 0.599307 | 4.4:+39043969 | MS.gene28319:intron |
| CCCTGAACAACGATAACGAA+AGG | 0.602234 | 4.4:-39040702 | None:intergenic |
| TTATTGTTTCTGTTGGATGG+AGG | 0.602255 | 4.4:+39047704 | MS.gene28319:CDS |
| GAACAGATTGAGTTTCACAA+TGG | 0.603272 | 4.4:+39044249 | MS.gene28319:CDS |
| AGGGACATACCTAAGATTGG+AGG | 0.605833 | 4.4:+39046874 | MS.gene28319:CDS |
| GACAACAGCATTACAGCCTA+GGG | 0.606939 | 4.4:+39048476 | MS.gene28319:CDS |
| AAAGCGGAAGCATAAGGAAG+GGG | 0.607209 | 4.4:+39049268 | MS.gene28319:CDS |
| CCAGTGTTGGGAGGTGCAAG+AGG | 0.608867 | 4.4:-39047832 | None:intergenic |
| ATTTGCGATAATAACACAGA+AGG | 0.610183 | 4.4:+39045730 | MS.gene28319:CDS |
| GCAAGTTCATGGGTTCCCAA+AGG | 0.611594 | 4.4:+39042007 | MS.gene28319:CDS |
| TTAGGTGCACATAGCTGGAG+TGG | 0.612744 | 4.4:+39043382 | MS.gene28319:intron |
| TTGATAAAGAAGCTGAGGAG+CGG | 0.614382 | 4.4:+39045756 | MS.gene28319:CDS |
| AGTGACTTGGGAATCACCAA+TGG | 0.615942 | 4.4:-39048739 | None:intergenic |
| ATCCACAAGAACATAGGGAT+GGG | 0.619925 | 4.4:-39042636 | None:intergenic |
| GATCCACAAGAACATAGGGA+TGG | 0.622882 | 4.4:-39042637 | None:intergenic |
| ATAAAGAAGCTGAGGAGCGG+AGG | 0.622920 | 4.4:+39045759 | MS.gene28319:CDS |
| CATTGATCATAGTGATCAGA+TGG | 0.623214 | 4.4:+39044305 | MS.gene28319:CDS |
| CGAACAGTTAGTGGGATTAG+GGG | 0.623966 | 4.4:+39048202 | MS.gene28319:CDS |
| TAGGTGCACATAGCTGGAGT+GGG | 0.628376 | 4.4:+39043383 | MS.gene28319:intron |
| AAATGGGATGAGAAAGATCA+CGG | 0.630236 | 4.4:+39045545 | MS.gene28319:CDS |
| CTATTGAGGATCTCAATGGA+AGG | 0.631575 | 4.4:+39047752 | MS.gene28319:CDS |
| TTTGCGATAATAACACAGAA+GGG | 0.632576 | 4.4:+39045731 | MS.gene28319:CDS |
| TACCATCCAATATTGGTTGG+GGG | 0.633210 | 4.4:+39046938 | MS.gene28319:CDS |
| CAGTGTTGGGAGGTGCAAGA+GGG | 0.635098 | 4.4:-39047831 | None:intergenic |
| TTTGATGCAACTTGTGTATG+GGG | 0.635429 | 4.4:+39045118 | MS.gene28319:CDS |
| TTTCATTGGGTTGTTCACGA+TGG | 0.635931 | 4.4:-39046655 | None:intergenic |
| GAATGCCCGAATGATATCAA+TGG | 0.636657 | 4.4:+39041763 | MS.gene28319:CDS |
| GAACAGTTAGTGGGATTAGG+GGG | 0.637381 | 4.4:+39048203 | MS.gene28319:CDS |
| ACACTTTATGGCTATCTCAG+AGG | 0.638793 | 4.4:+39042722 | MS.gene28319:CDS |
| AGATCCCCAACCCCAGACAT+GGG | 0.639706 | 4.4:-39043509 | None:intergenic |
| AAAAGCGGAAGCATAAGGAA+GGG | 0.646298 | 4.4:+39049267 | MS.gene28319:CDS |
| AAACTCAAACCTATGCTCGA+CGG | 0.647969 | 4.4:-39049406 | None:intergenic |
| TGGGTTCCCAAAGGTCATGG+GGG | 0.648510 | 4.4:+39042016 | MS.gene28319:CDS |
| AGTTTCACAATGGAAGACAA+AGG | 0.652003 | 4.4:+39044259 | MS.gene28319:CDS |
| GCGACGCTGTTCTTTCTCGA+CGG | 0.652773 | 4.4:-39040637 | None:intergenic |
| ACTTGAAGCAGAGAGAGCAA+AGG | 0.653193 | 4.4:+39049304 | MS.gene28319:CDS |
| TCATTGATAGGATTCAGAAG+AGG | 0.653695 | 4.4:+39044713 | MS.gene28319:intron |
| TGCTTCTGAATCATCTGACG+GGG | 0.654635 | 4.4:+39044182 | MS.gene28319:CDS |
| AACGAGGATGTAGAGCAGCA+TGG | 0.656401 | 4.4:+39044120 | MS.gene28319:CDS |
| AAAGTGTCATCAGAAGCTCT+AGG | 0.657938 | 4.4:+39044081 | MS.gene28319:CDS |
| GAAGGTGTTGAACAAGAGCG+TGG | 0.658107 | 4.4:-39048876 | None:intergenic |
| TGGCAGAAAGAATCCTCGCA+CGG | 0.658585 | 4.4:+39045084 | MS.gene28319:CDS |
| GCATGGGAAATATTTCAAAG+TGG | 0.664305 | 4.4:+39045051 | MS.gene28319:CDS |
| TGATGGAGTGGTCCACGCCG+AGG | 0.665520 | 4.4:+39045490 | MS.gene28319:CDS |
| CGAAGAGAATGATAGTAGCG+AGG | 0.665712 | 4.4:+39045169 | MS.gene28319:CDS |
| TGAACAACGATAACGAAAGG+AGG | 0.670102 | 4.4:-39040699 | None:intergenic |
| AGATGGACTGGATGATGGAG+TGG | 0.675807 | 4.4:+39045478 | MS.gene28319:CDS |
| CACTTGTCTCAGGAAAGCAA+AGG | 0.680329 | 4.4:+39041725 | MS.gene28319:intron |
| TGAACTGAACGATCTTGATG+AGG | 0.680605 | 4.4:+39046820 | MS.gene28319:CDS |
| ACTTGGAACAATCCTCGGCG+TGG | 0.681288 | 4.4:-39045502 | None:intergenic |
| GCAACTATTCCAGTGTTGGG+AGG | 0.685453 | 4.4:-39047841 | None:intergenic |
| CCAGGTTAAAGCGACATAGG+TGG | 0.688054 | 4.4:+39047650 | MS.gene28319:CDS |
| AAGTGCTCAACCATTTCACA+GGG | 0.695120 | 4.4:-39046908 | None:intergenic |
| AAATCCAAGAAGAAGCACGA+TGG | 0.700105 | 4.4:+39040528 | MS.gene28319:CDS |
| ACAACGATAACGAAAGGAGG+CGG | 0.704266 | 4.4:-39040696 | None:intergenic |
| TGAAAGTAACTATATTGACA+AGG | 0.704301 | 4.4:+39046673 | MS.gene28319:CDS |
| GTCAACGGATTATAAAACTG+AGG | 0.707234 | 4.4:-39048456 | None:intergenic |
| TGATGACCCTGAGACACCAG+AGG | 0.729413 | 4.4:+39046601 | MS.gene28319:intron |
| GAAGCTCTAGGTGATGCACA+AGG | 0.732927 | 4.4:+39044093 | MS.gene28319:CDS |
| TGATGCACAAGGTACAAACG+AGG | 0.769691 | 4.4:+39044104 | MS.gene28319:CDS |
| GAGGATGAAGATGACACACA+TGG | 0.772317 | 4.4:+39044768 | MS.gene28319:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 39040456 | 39049418 | 39040456 | ID=MS.gene28319 |
| chr4.4 | mRNA | 39040456 | 39049418 | 39040456 | ID=MS.gene28319.t1;Parent=MS.gene28319 |
| chr4.4 | exon | 39040456 | 39040734 | 39040456 | ID=MS.gene28319.t1.exon1;Parent=MS.gene28319.t1 |
| chr4.4 | CDS | 39040456 | 39040734 | 39040456 | ID=cds.MS.gene28319.t1;Parent=MS.gene28319.t1 |
| chr4.4 | exon | 39040835 | 39040925 | 39040835 | ID=MS.gene28319.t1.exon2;Parent=MS.gene28319.t1 |
| chr4.4 | CDS | 39040835 | 39040925 | 39040835 | ID=cds.MS.gene28319.t1;Parent=MS.gene28319.t1 |
| chr4.4 | exon | 39041737 | 39041855 | 39041737 | ID=MS.gene28319.t1.exon3;Parent=MS.gene28319.t1 |
| chr4.4 | CDS | 39041737 | 39041855 | 39041737 | ID=cds.MS.gene28319.t1;Parent=MS.gene28319.t1 |
| chr4.4 | exon | 39041981 | 39042171 | 39041981 | ID=MS.gene28319.t1.exon4;Parent=MS.gene28319.t1 |
| chr4.4 | CDS | 39041981 | 39042171 | 39041981 | ID=cds.MS.gene28319.t1;Parent=MS.gene28319.t1 |
| chr4.4 | exon | 39042559 | 39042769 | 39042559 | ID=MS.gene28319.t1.exon5;Parent=MS.gene28319.t1 |
| chr4.4 | CDS | 39042559 | 39042769 | 39042559 | ID=cds.MS.gene28319.t1;Parent=MS.gene28319.t1 |
| chr4.4 | exon | 39043386 | 39043626 | 39043386 | ID=MS.gene28319.t1.exon6;Parent=MS.gene28319.t1 |
| chr4.4 | CDS | 39043386 | 39043626 | 39043386 | ID=cds.MS.gene28319.t1;Parent=MS.gene28319.t1 |
| chr4.4 | exon | 39043971 | 39044326 | 39043971 | ID=MS.gene28319.t1.exon7;Parent=MS.gene28319.t1 |
| chr4.4 | CDS | 39043971 | 39044326 | 39043971 | ID=cds.MS.gene28319.t1;Parent=MS.gene28319.t1 |
| chr4.4 | exon | 39044723 | 39044789 | 39044723 | ID=MS.gene28319.t1.exon8;Parent=MS.gene28319.t1 |
| chr4.4 | CDS | 39044723 | 39044789 | 39044723 | ID=cds.MS.gene28319.t1;Parent=MS.gene28319.t1 |
| chr4.4 | exon | 39045045 | 39045238 | 39045045 | ID=MS.gene28319.t1.exon9;Parent=MS.gene28319.t1 |
| chr4.4 | CDS | 39045045 | 39045238 | 39045045 | ID=cds.MS.gene28319.t1;Parent=MS.gene28319.t1 |
| chr4.4 | exon | 39045467 | 39045811 | 39045467 | ID=MS.gene28319.t1.exon10;Parent=MS.gene28319.t1 |
| chr4.4 | CDS | 39045467 | 39045811 | 39045467 | ID=cds.MS.gene28319.t1;Parent=MS.gene28319.t1 |
| chr4.4 | exon | 39046614 | 39046694 | 39046614 | ID=MS.gene28319.t1.exon11;Parent=MS.gene28319.t1 |
| chr4.4 | CDS | 39046614 | 39046694 | 39046614 | ID=cds.MS.gene28319.t1;Parent=MS.gene28319.t1 |
| chr4.4 | exon | 39046779 | 39046997 | 39046779 | ID=MS.gene28319.t1.exon12;Parent=MS.gene28319.t1 |
| chr4.4 | CDS | 39046779 | 39046997 | 39046779 | ID=cds.MS.gene28319.t1;Parent=MS.gene28319.t1 |
| chr4.4 | exon | 39047649 | 39047888 | 39047649 | ID=MS.gene28319.t1.exon13;Parent=MS.gene28319.t1 |
| chr4.4 | CDS | 39047649 | 39047888 | 39047649 | ID=cds.MS.gene28319.t1;Parent=MS.gene28319.t1 |
| chr4.4 | exon | 39048028 | 39048237 | 39048028 | ID=MS.gene28319.t1.exon14;Parent=MS.gene28319.t1 |
| chr4.4 | CDS | 39048028 | 39048237 | 39048028 | ID=cds.MS.gene28319.t1;Parent=MS.gene28319.t1 |
| chr4.4 | exon | 39048318 | 39048587 | 39048318 | ID=MS.gene28319.t1.exon15;Parent=MS.gene28319.t1 |
| chr4.4 | CDS | 39048318 | 39048587 | 39048318 | ID=cds.MS.gene28319.t1;Parent=MS.gene28319.t1 |
| chr4.4 | exon | 39048709 | 39048918 | 39048709 | ID=MS.gene28319.t1.exon16;Parent=MS.gene28319.t1 |
| chr4.4 | CDS | 39048709 | 39048918 | 39048709 | ID=cds.MS.gene28319.t1;Parent=MS.gene28319.t1 |
| chr4.4 | exon | 39049263 | 39049418 | 39049263 | ID=MS.gene28319.t1.exon17;Parent=MS.gene28319.t1 |
| chr4.4 | CDS | 39049263 | 39049418 | 39049263 | ID=cds.MS.gene28319.t1;Parent=MS.gene28319.t1 |
| Gene Sequence |
| Protein sequence |
