Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38966.t1 | XP_013445472.1 | 95.1 | 224 | 11 | 0 | 1 | 224 | 4 | 227 | 2.30E-118 | 434.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38966.t1 | Q9Y5Z4 | 34.4 | 186 | 106 | 5 | 35 | 214 | 20 | 195 | 1.7e-21 | 104.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38966.t1 | I3S399 | 95.1 | 224 | 11 | 0 | 1 | 224 | 4 | 227 | 1.7e-118 | 434.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene38966 | 0.826191 | 3.11E-54 | -1.69E-46 |
| MS.gene049171 | MS.gene38966 | 0.802667 | 5.03E-49 | -1.69E-46 |
| MS.gene049369 | MS.gene38966 | 0.809739 | 1.63E-50 | -1.69E-46 |
| MS.gene049427 | MS.gene38966 | 0.834228 | 3.38E-56 | -1.69E-46 |
| MS.gene049609 | MS.gene38966 | 0.834772 | 2.47E-56 | -1.69E-46 |
| MS.gene049661 | MS.gene38966 | 0.806011 | 1.01E-49 | -1.69E-46 |
| MS.gene049662 | MS.gene38966 | 0.801163 | 1.03E-48 | -1.69E-46 |
| MS.gene049805 | MS.gene38966 | 0.842451 | 2.56E-58 | -1.69E-46 |
| MS.gene050397 | MS.gene38966 | 0.803561 | 3.29E-49 | -1.69E-46 |
| MS.gene050432 | MS.gene38966 | 0.805397 | 1.36E-49 | -1.69E-46 |
| MS.gene050464 | MS.gene38966 | 0.803769 | 2.98E-49 | -1.69E-46 |
| MS.gene050529 | MS.gene38966 | 0.816968 | 4.21E-52 | -1.69E-46 |
| MS.gene050593 | MS.gene38966 | 0.850965 | 1.21E-60 | -1.69E-46 |
| MS.gene050670 | MS.gene38966 | 0.830174 | 3.41E-55 | -1.69E-46 |
| MS.gene050747 | MS.gene38966 | 0.811057 | 8.47E-51 | -1.69E-46 |
| MS.gene050770 | MS.gene38966 | 0.801779 | 7.66E-49 | -1.69E-46 |
| MS.gene050772 | MS.gene38966 | 0.835839 | 1.33E-56 | -1.69E-46 |
| MS.gene050950 | MS.gene38966 | 0.801573 | 8.45E-49 | -1.69E-46 |
| MS.gene05105 | MS.gene38966 | 0.830349 | 3.09E-55 | -1.69E-46 |
| MS.gene051228 | MS.gene38966 | 0.824605 | 7.37E-54 | -1.69E-46 |
| MS.gene051387 | MS.gene38966 | 0.8309 | 2.26E-55 | -1.69E-46 |
| MS.gene051582 | MS.gene38966 | 0.801639 | 8.19E-49 | -1.69E-46 |
| MS.gene051666 | MS.gene38966 | 0.844054 | 9.59E-59 | -1.69E-46 |
| MS.gene051692 | MS.gene38966 | 0.819959 | 8.83E-53 | -1.69E-46 |
| MS.gene052078 | MS.gene38966 | 0.807274 | 5.48E-50 | -1.69E-46 |
| MS.gene052134 | MS.gene38966 | 0.803742 | 3.01E-49 | -1.69E-46 |
| MS.gene052135 | MS.gene38966 | 0.802752 | 4.83E-49 | -1.69E-46 |
| MS.gene052136 | MS.gene38966 | 0.815031 | 1.14E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene38966 | 0.81249 | 4.13E-51 | -1.69E-46 |
| MS.gene052310 | MS.gene38966 | 0.854141 | 1.50E-61 | -1.69E-46 |
| MS.gene052322 | MS.gene38966 | 0.856763 | 2.58E-62 | -1.69E-46 |
| MS.gene052340 | MS.gene38966 | 0.823516 | 1.33E-53 | -1.69E-46 |
| MS.gene052414 | MS.gene38966 | 0.80187 | 7.34E-49 | -1.69E-46 |
| MS.gene052421 | MS.gene38966 | 0.862915 | 3.61E-64 | -1.69E-46 |
| MS.gene052481 | MS.gene38966 | 0.814641 | 1.39E-51 | -1.69E-46 |
| MS.gene052484 | MS.gene38966 | 0.827822 | 1.27E-54 | -1.69E-46 |
| MS.gene052501 | MS.gene38966 | 0.815875 | 7.39E-52 | -1.69E-46 |
| MS.gene052505 | MS.gene38966 | 0.805397 | 1.36E-49 | -1.69E-46 |
| MS.gene052822 | MS.gene38966 | 0.800501 | 1.40E-48 | -1.69E-46 |
| MS.gene052870 | MS.gene38966 | 0.81136 | 7.28E-51 | -1.69E-46 |
| MS.gene053009 | MS.gene38966 | 0.821794 | 3.34E-53 | -1.69E-46 |
| MS.gene053103 | MS.gene38966 | 0.858645 | 7.15E-63 | -1.69E-46 |
| MS.gene053104 | MS.gene38966 | 0.847909 | 8.58E-60 | -1.69E-46 |
| MS.gene053207 | MS.gene38966 | 0.80087 | 1.18E-48 | -1.69E-46 |
| MS.gene053209 | MS.gene38966 | 0.819855 | 9.33E-53 | -1.69E-46 |
| MS.gene053322 | MS.gene38966 | 0.822049 | 2.92E-53 | -1.69E-46 |
| MS.gene053449 | MS.gene38966 | 0.837371 | 5.41E-57 | -1.69E-46 |
| MS.gene053574 | MS.gene38966 | 0.809697 | 1.66E-50 | -1.69E-46 |
| MS.gene053912 | MS.gene38966 | 0.831732 | 1.41E-55 | -1.69E-46 |
| MS.gene053916 | MS.gene38966 | 0.822173 | 2.73E-53 | -1.69E-46 |
| MS.gene054376 | MS.gene38966 | 0.809542 | 1.80E-50 | -1.69E-46 |
| MS.gene05505 | MS.gene38966 | 0.854273 | 1.37E-61 | -1.69E-46 |
| MS.gene055116 | MS.gene38966 | 0.843924 | 1.04E-58 | -1.69E-46 |
| MS.gene055206 | MS.gene38966 | 0.828328 | 9.56E-55 | -1.69E-46 |
| MS.gene055289 | MS.gene38966 | 0.826538 | 2.57E-54 | -1.69E-46 |
| MS.gene05553 | MS.gene38966 | 0.802808 | 4.71E-49 | -1.69E-46 |
| MS.gene055722 | MS.gene38966 | 0.820927 | 5.30E-53 | -1.69E-46 |
| MS.gene05592 | MS.gene38966 | 0.836579 | 8.61E-57 | -1.69E-46 |
| MS.gene056374 | MS.gene38966 | 0.804914 | 1.72E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene38966 | 0.854842 | 9.40E-62 | -1.69E-46 |
| MS.gene056609 | MS.gene38966 | 0.815111 | 1.09E-51 | -1.69E-46 |
| MS.gene05664 | MS.gene38966 | 0.84763 | 1.02E-59 | -1.69E-46 |
| MS.gene057011 | MS.gene38966 | 0.802436 | 5.62E-49 | -1.69E-46 |
| MS.gene05702 | MS.gene38966 | 0.827245 | 1.74E-54 | -1.69E-46 |
| MS.gene057123 | MS.gene38966 | 0.821511 | 3.88E-53 | -1.69E-46 |
| MS.gene057124 | MS.gene38966 | 0.810165 | 1.32E-50 | -1.69E-46 |
| MS.gene057129 | MS.gene38966 | 0.821718 | 3.48E-53 | -1.69E-46 |
| MS.gene057146 | MS.gene38966 | 0.810619 | 1.05E-50 | -1.69E-46 |
| MS.gene057295 | MS.gene38966 | 0.805829 | 1.11E-49 | -1.69E-46 |
| MS.gene057310 | MS.gene38966 | 0.81936 | 1.21E-52 | -1.69E-46 |
| MS.gene057331 | MS.gene38966 | 0.847722 | 9.66E-60 | -1.69E-46 |
| MS.gene057416 | MS.gene38966 | 0.861265 | 1.16E-63 | -1.69E-46 |
| MS.gene057658 | MS.gene38966 | 0.801929 | 7.14E-49 | -1.69E-46 |
| MS.gene057734 | MS.gene38966 | 0.820707 | 5.95E-53 | -1.69E-46 |
| MS.gene057856 | MS.gene38966 | 0.81476 | 1.31E-51 | -1.69E-46 |
| MS.gene058019 | MS.gene38966 | 0.827445 | 1.56E-54 | -1.69E-46 |
| MS.gene058459 | MS.gene38966 | 0.801779 | 7.67E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene38966 | 0.804636 | 1.96E-49 | -1.69E-46 |
| MS.gene058838 | MS.gene38966 | 0.81884 | 1.59E-52 | -1.69E-46 |
| MS.gene058928 | MS.gene38966 | 0.819865 | 9.28E-53 | -1.69E-46 |
| MS.gene05934 | MS.gene38966 | 0.818766 | 1.65E-52 | -1.69E-46 |
| MS.gene059455 | MS.gene38966 | 0.83129 | 1.82E-55 | -1.69E-46 |
| MS.gene059536 | MS.gene38966 | 0.821071 | 4.91E-53 | -1.69E-46 |
| MS.gene059597 | MS.gene38966 | 0.809709 | 1.66E-50 | -1.69E-46 |
| MS.gene05959 | MS.gene38966 | 0.801265 | 9.77E-49 | -1.69E-46 |
| MS.gene059676 | MS.gene38966 | 0.821535 | 3.83E-53 | -1.69E-46 |
| MS.gene059688 | MS.gene38966 | 0.841853 | 3.69E-58 | -1.69E-46 |
| MS.gene059692 | MS.gene38966 | 0.835604 | 1.52E-56 | -1.69E-46 |
| MS.gene059695 | MS.gene38966 | 0.836399 | 9.57E-57 | -1.69E-46 |
| MS.gene059711 | MS.gene38966 | 0.818109 | 2.33E-52 | -1.69E-46 |
| MS.gene059807 | MS.gene38966 | 0.812667 | 3.78E-51 | -1.69E-46 |
| MS.gene059894 | MS.gene38966 | 0.800273 | 1.56E-48 | -1.69E-46 |
| MS.gene059960 | MS.gene38966 | 0.822975 | 1.78E-53 | -1.69E-46 |
| MS.gene060403 | MS.gene38966 | 0.856654 | 2.78E-62 | -1.69E-46 |
| MS.gene060804 | MS.gene38966 | 0.866212 | 3.36E-65 | -1.69E-46 |
| MS.gene060818 | MS.gene38966 | 0.859747 | 3.34E-63 | -1.69E-46 |
| MS.gene060835 | MS.gene38966 | 0.820465 | 6.76E-53 | -1.69E-46 |
| MS.gene060837 | MS.gene38966 | 0.824774 | 6.73E-54 | -1.69E-46 |
| MS.gene06092 | MS.gene38966 | 0.81128 | 7.57E-51 | -1.69E-46 |
| MS.gene061041 | MS.gene38966 | 0.831898 | 1.29E-55 | -1.69E-46 |
| MS.gene061049 | MS.gene38966 | 0.805974 | 1.03E-49 | -1.69E-46 |
| MS.gene061154 | MS.gene38966 | 0.802641 | 5.09E-49 | -1.69E-46 |
| MS.gene061200 | MS.gene38966 | 0.808246 | 3.40E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38966.t1 | MTR_8g461390 | 95.089 | 224 | 11 | 0 | 1 | 224 | 4 | 227 | 6.39e-163 | 449 |
| MS.gene38966.t1 | MTR_4g105470 | 41.111 | 180 | 97 | 4 | 36 | 212 | 23 | 196 | 9.10e-33 | 118 |
| MS.gene38966.t1 | MTR_8g069755 | 35.096 | 208 | 121 | 5 | 10 | 212 | 5 | 203 | 3.07e-32 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38966.t1 | AT1G17100 | 60.891 | 202 | 74 | 2 | 22 | 218 | 30 | 231 | 2.82e-90 | 265 |
| MS.gene38966.t1 | AT1G78450 | 47.768 | 224 | 104 | 4 | 1 | 219 | 1 | 216 | 8.52e-71 | 216 |
| MS.gene38966.t1 | AT1G78460 | 41.126 | 231 | 110 | 5 | 1 | 217 | 1 | 219 | 3.42e-51 | 166 |
Find 48 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTGTTTGATTTGGAAAA+TGG | 0.222937 | 8.4:-49225856 | MS.gene38966:CDS |
| CTTATCTCAATTTCATTATC+AGG | 0.236313 | 8.4:-49227406 | MS.gene38966:CDS |
| AAGCTACTAGAACTGGTTTC+AGG | 0.240236 | 8.4:-49227237 | MS.gene38966:CDS |
| GACGTTATAATTCGTCTGTT+TGG | 0.282437 | 8.4:-49227297 | MS.gene38966:CDS |
| GGATTTGCTTGGTTCACTTT+TGG | 0.290356 | 8.4:+49226123 | None:intergenic |
| TAGGCTATTTGATTACATTC+AGG | 0.303343 | 8.4:-49226256 | MS.gene38966:CDS |
| GATTTGGTTCTTGTTTGATT+TGG | 0.323831 | 8.4:-49225863 | MS.gene38966:CDS |
| GGGACACTCTATGCGTTTGC+AGG | 0.331557 | 8.4:+49227360 | None:intergenic |
| TGAACATGAAGACCCTTTGC+AGG | 0.337320 | 8.4:+49226096 | None:intergenic |
| AATGTCTTGAATAGGAGAAT+TGG | 0.347748 | 8.4:+49227270 | None:intergenic |
| TATGCAGCAGTTAGACAATT+TGG | 0.366995 | 8.4:-49226057 | MS.gene38966:CDS |
| CTTGTTGAAGCTACTAGAAC+TGG | 0.386778 | 8.4:-49227244 | MS.gene38966:CDS |
| ATAATAGGGTGAATGAGATT+TGG | 0.387077 | 8.4:-49225879 | MS.gene38966:CDS |
| ACAAATGAAGACTCACAAAA+TGG | 0.387846 | 8.4:+49226162 | None:intergenic |
| AGCTTCTATGACATCATAGT+TGG | 0.390370 | 8.4:+49227339 | None:intergenic |
| TTGCAGGAGGTGGATTTGCT+TGG | 0.398401 | 8.4:+49226112 | None:intergenic |
| CTGAAGCATGACCAGCTCTA+TGG | 0.399888 | 8.4:+49225941 | None:intergenic |
| ACCCTATTATCATATTCAAA+AGG | 0.401311 | 8.4:+49225892 | None:intergenic |
| ACAAGAGAAATGTCTTGAAT+AGG | 0.403479 | 8.4:+49227262 | None:intergenic |
| CCCTATTATCATATTCAAAA+GGG | 0.409363 | 8.4:+49225893 | None:intergenic |
| AGGCTATTTGATTACATTCA+GGG | 0.450840 | 8.4:-49226255 | MS.gene38966:CDS |
| TGAGGAAGCTGCAGCATTGA+AGG | 0.451680 | 8.4:-49226007 | MS.gene38966:CDS |
| TGAAGACCCTTTGCAGGAGG+TGG | 0.452104 | 8.4:+49226102 | None:intergenic |
| AACTATGATGTCATAGAAGC+TGG | 0.463929 | 8.4:-49227337 | MS.gene38966:CDS |
| GCATTGAAGGACAGTATTGC+CGG | 0.475834 | 8.4:-49225994 | MS.gene38966:CDS |
| GATGTCATAGAAGCTGGAAA+TGG | 0.490076 | 8.4:-49227331 | MS.gene38966:CDS |
| AGGGTCTTCATGTTCAAAGA+TGG | 0.509198 | 8.4:-49226089 | MS.gene38966:CDS |
| AGCAAATCCACCTCCTGCAA+AGG | 0.509519 | 8.4:-49226109 | MS.gene38966:CDS |
| GCAAATCCACCTCCTGCAAA+GGG | 0.510194 | 8.4:-49226108 | MS.gene38966:CDS |
| GGTAAGACTTCAGAGAGAAC+AGG | 0.536541 | 8.4:+49226195 | None:intergenic |
| GCTTCTATGACATCATAGTT+GGG | 0.553146 | 8.4:+49227340 | None:intergenic |
| TCACAAAATGGTCCATCACT+TGG | 0.562399 | 8.4:+49226174 | None:intergenic |
| TCTGAAGTCTTACCAAGTGA+TGG | 0.564116 | 8.4:-49226186 | MS.gene38966:CDS |
| GCAGCAGTTAGACAATTTGG+TGG | 0.569529 | 8.4:-49226054 | MS.gene38966:CDS |
| GGCTATTTGATTACATTCAG+GGG | 0.574090 | 8.4:-49226254 | MS.gene38966:CDS |
| GGACACTCTATGCGTTTGCA+GGG | 0.574179 | 8.4:+49227361 | None:intergenic |
| TGTTGTGGTGGTTACAGCCA+TGG | 0.575258 | 8.4:+49227453 | None:intergenic |
| TTTGTCAAAGATACAGATGT+TGG | 0.582094 | 8.4:-49226030 | MS.gene38966:CDS |
| AGCAGAAGACCACTTAGTAC+CGG | 0.588835 | 8.4:+49225975 | None:intergenic |
| ATTGAACAAAGCCATAGAGC+TGG | 0.606780 | 8.4:-49225952 | MS.gene38966:CDS |
| ACAGTATTGCCGGTACTAAG+TGG | 0.612734 | 8.4:-49225984 | MS.gene38966:CDS |
| CCTATTATCATATTCAAAAG+GGG | 0.627523 | 8.4:+49225894 | None:intergenic |
| CAAAGATACAGATGTTGGTG+AGG | 0.634324 | 8.4:-49226025 | MS.gene38966:CDS |
| CAGTGAGAGCTTCAATGTTG+TGG | 0.636610 | 8.4:+49227438 | None:intergenic |
| ACATGAAGACCCTTTGCAGG+AGG | 0.641553 | 8.4:+49226099 | None:intergenic |
| TCATGCTTCAGTTTACTCTG+TGG | 0.643170 | 8.4:-49225929 | MS.gene38966:CDS |
| CTACTAGAACTGGTTTCAGG+AGG | 0.662955 | 8.4:-49227234 | MS.gene38966:intron |
| TGAGAGCTTCAATGTTGTGG+TGG | 0.673155 | 8.4:+49227441 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTTGAATACATATAAAA+GGG | - | chr8.4:49226299-49226318 | MS.gene38966:intron | 15.0% |
| !! | AATGTGAAATGATTTATATT+TGG | - | chr8.4:49226728-49226747 | MS.gene38966:intron | 15.0% |
| !!! | TTAATCTTTTTCTTTTTCTT+AGG | - | chr8.4:49227016-49227035 | MS.gene38966:intron | 15.0% |
| !! | GAAAGTTGAATACATATAAA+AGG | - | chr8.4:49226298-49226317 | MS.gene38966:intron | 20.0% |
| !!! | AAAATTAATTGTCTCTAGAA+TGG | + | chr8.4:49226813-49226832 | None:intergenic | 20.0% |
| !!! | AAATTAATTGTCTCTAGAAT+GGG | + | chr8.4:49226812-49226831 | None:intergenic | 20.0% |
| !!! | AGTTTTTTCAGTAATAGTTT+AGG | - | chr8.4:49226099-49226118 | MS.gene38966:CDS | 20.0% |
| ! | AACTAATTCTAACTTGAAGT+TGG | + | chr8.4:49226527-49226546 | None:intergenic | 25.0% |
| ! | AATCAAGTTTAGTAACTCTT+CGG | + | chr8.4:49226998-49227017 | None:intergenic | 25.0% |
| ! | ACCCTATTATCATATTCAAA+AGG | + | chr8.4:49227402-49227421 | None:intergenic | 25.0% |
| ! | ATGCTAAAATCAATTGTTTC+TGG | - | chr8.4:49226851-49226870 | MS.gene38966:intron | 25.0% |
| ! | CCCTATTATCATATTCAAAA+GGG | + | chr8.4:49227401-49227420 | None:intergenic | 25.0% |
| ! | CCTATTATCATATTCAAAAG+GGG | + | chr8.4:49227400-49227419 | None:intergenic | 25.0% |
| ! | CTTATCTCAATTTCATTATC+AGG | - | chr8.4:49225885-49225904 | MS.gene38966:CDS | 25.0% |
| ! | TTTAGTGTAATTACAAGTGT+CGG | - | chr8.4:49226428-49226447 | MS.gene38966:intron | 25.0% |
| ! | TTTCAAATTATTAGCTGTGT+CGG | + | chr8.4:49226394-49226413 | None:intergenic | 25.0% |
| !! | CCCTTTTGAATATGATAATA+GGG | - | chr8.4:49227398-49227417 | MS.gene38966:CDS | 25.0% |
| !!! | AAGTTTTAATGAAGTGTTTG+TGG | - | chr8.4:49226956-49226975 | MS.gene38966:intron | 25.0% |
| !!! | ACAATTGATTTTAGCATGTT+TGG | + | chr8.4:49226848-49226867 | None:intergenic | 25.0% |
| !!! | ACAATTGATTTTGACATGTT+TGG | + | chr8.4:49226582-49226601 | None:intergenic | 25.0% |
| !!! | TTCTTGTTTGATTTGGAAAA+TGG | - | chr8.4:49227435-49227454 | MS.gene38966:CDS | 25.0% |
| AATGTCTTGAATAGGAGAAT+TGG | + | chr8.4:49226024-49226043 | None:intergenic | 30.0% | |
| ACAAATGAAGACTCACAAAA+TGG | + | chr8.4:49227132-49227151 | None:intergenic | 30.0% | |
| ACAAGAGAAATGTCTTGAAT+AGG | + | chr8.4:49226032-49226051 | None:intergenic | 30.0% | |
| AGGCTATTTGATTACATTCA+GGG | - | chr8.4:49227036-49227055 | MS.gene38966:intron | 30.0% | |
| ATAATAGGGTGAATGAGATT+TGG | - | chr8.4:49227412-49227431 | MS.gene38966:CDS | 30.0% | |
| TAGGCTATTTGATTACATTC+AGG | - | chr8.4:49227035-49227054 | MS.gene38966:intron | 30.0% | |
| TGAACTTCATGATCATTCAT+TGG | + | chr8.4:49226922-49226941 | None:intergenic | 30.0% | |
| TTTGTCAAAGATACAGATGT+TGG | - | chr8.4:49227261-49227280 | MS.gene38966:CDS | 30.0% | |
| ! | CCCCTTTTGAATATGATAAT+AGG | - | chr8.4:49227397-49227416 | MS.gene38966:CDS | 30.0% |
| !! | GATTTGGTTCTTGTTTGATT+TGG | - | chr8.4:49227428-49227447 | MS.gene38966:CDS | 30.0% |
| AACTATGATGTCATAGAAGC+TGG | - | chr8.4:49225954-49225973 | MS.gene38966:CDS | 35.0% | |
| AAGTTTAGTAACTCTTCGGA+TGG | + | chr8.4:49226994-49227013 | None:intergenic | 35.0% | |
| AGCTTCTATGACATCATAGT+TGG | + | chr8.4:49225955-49225974 | None:intergenic | 35.0% | |
| AGTTTAGTAACTCTTCGGAT+GGG | + | chr8.4:49226993-49227012 | None:intergenic | 35.0% | |
| GACGTTATAATTCGTCTGTT+TGG | - | chr8.4:49225994-49226013 | MS.gene38966:CDS | 35.0% | |
| GCTTCTATGACATCATAGTT+GGG | + | chr8.4:49225954-49225973 | None:intergenic | 35.0% | |
| GGCTATTTGATTACATTCAG+GGG | - | chr8.4:49227037-49227056 | MS.gene38966:intron | 35.0% | |
| TATGCAGCAGTTAGACAATT+TGG | - | chr8.4:49227234-49227253 | MS.gene38966:intron | 35.0% | |
| ! | TTAGTGTGTGTTTGGTTTCA+CGG | + | chr8.4:49226898-49226917 | None:intergenic | 35.0% |
| !! | TCATTGGTTTAGTGTGTGTT+TGG | + | chr8.4:49226906-49226925 | None:intergenic | 35.0% |
| !!! | CTGTCATCTCAATTTTTTGC+TGG | + | chr8.4:49227074-49227093 | None:intergenic | 35.0% |
| AGGGTCTTCATGTTCAAAGA+TGG | - | chr8.4:49227202-49227221 | MS.gene38966:intron | 40.0% | |
| ATTGAACAAAGCCATAGAGC+TGG | - | chr8.4:49227339-49227358 | MS.gene38966:CDS | 40.0% | |
| CAAAGATACAGATGTTGGTG+AGG | - | chr8.4:49227266-49227285 | MS.gene38966:CDS | 40.0% | |
| CTTGTTGAAGCTACTAGAAC+TGG | - | chr8.4:49226047-49226066 | MS.gene38966:CDS | 40.0% | |
| GATGTCATAGAAGCTGGAAA+TGG | - | chr8.4:49225960-49225979 | MS.gene38966:CDS | 40.0% | |
| GGGAGTTGAAAAATCATGTC+TGG | - | chr8.4:49226319-49226338 | MS.gene38966:intron | 40.0% | |
| GTGTTTGCTTCTAGTGTGAT+TGG | - | chr8.4:49226213-49226232 | MS.gene38966:CDS | 40.0% | |
| TATGAAGCACAGACAATCCT+CGG | + | chr8.4:49226479-49226498 | None:intergenic | 40.0% | |
| TCACAAAATGGTCCATCACT+TGG | + | chr8.4:49227120-49227139 | None:intergenic | 40.0% | |
| TCATGCTTCAGTTTACTCTG+TGG | - | chr8.4:49227362-49227381 | MS.gene38966:CDS | 40.0% | |
| ! | AAGCTACTAGAACTGGTTTC+AGG | - | chr8.4:49226054-49226073 | MS.gene38966:CDS | 40.0% |
| ! | TAATGAAGTGTTTGTGGTGC+TGG | - | chr8.4:49226962-49226981 | MS.gene38966:intron | 40.0% |
| ! | TCTGAAGTCTTACCAAGTGA+TGG | - | chr8.4:49227105-49227124 | MS.gene38966:intron | 40.0% |
| !! | AATTACAAGTGTCGGTGTGT+CGG | - | chr8.4:49226436-49226455 | MS.gene38966:intron | 40.0% |
| !! | GGATTTGCTTGGTTCACTTT+TGG | + | chr8.4:49227171-49227190 | None:intergenic | 40.0% |
| ACACTTCCCAACGTGAAAAG+TGG | + | chr8.4:49226629-49226648 | None:intergenic | 45.0% | |
| ACAGTATTGCCGGTACTAAG+TGG | - | chr8.4:49227307-49227326 | MS.gene38966:CDS | 45.0% | |
| AGCAGAAGACCACTTAGTAC+CGG | + | chr8.4:49227319-49227338 | None:intergenic | 45.0% | |
| CACTTCCCAACGTGAAAAGT+GGG | + | chr8.4:49226628-49226647 | None:intergenic | 45.0% | |
| CAGTGAGAGCTTCAATGTTG+TGG | + | chr8.4:49225856-49225875 | None:intergenic | 45.0% | |
| GAGGATTGTCTGTGCTTCAT+AGG | - | chr8.4:49226478-49226497 | MS.gene38966:intron | 45.0% | |
| GCAGCAGTTAGACAATTTGG+TGG | - | chr8.4:49227237-49227256 | MS.gene38966:CDS | 45.0% | |
| GCATTGAAGGACAGTATTGC+CGG | - | chr8.4:49227297-49227316 | MS.gene38966:CDS | 45.0% | |
| GGTAAGACTTCAGAGAGAAC+AGG | + | chr8.4:49227099-49227118 | None:intergenic | 45.0% | |
| TGAACATGAAGACCCTTTGC+AGG | + | chr8.4:49227198-49227217 | None:intergenic | 45.0% | |
| TGAGAGCTTCAATGTTGTGG+TGG | + | chr8.4:49225853-49225872 | None:intergenic | 45.0% | |
| TTGTCTGTGCTTCATAGGTC+TGG | - | chr8.4:49226483-49226502 | MS.gene38966:intron | 45.0% | |
| ! | ATGTCTGGAGCTATGAAGCA+CGG | - | chr8.4:49226334-49226353 | MS.gene38966:intron | 45.0% |
| ! | CTACTAGAACTGGTTTCAGG+AGG | - | chr8.4:49226057-49226076 | MS.gene38966:CDS | 45.0% |
| ! | TGTGTGTTTGGTTTCACGGT+GGG | + | chr8.4:49226894-49226913 | None:intergenic | 45.0% |
| !! | ACTCTTCCCACTTTTCACGT+TGG | - | chr8.4:49226619-49226638 | MS.gene38966:intron | 45.0% |
| !! | CTCTTCCCACTTTTCACGTT+GGG | - | chr8.4:49226620-49226639 | MS.gene38966:intron | 45.0% |
| ACATGAAGACCCTTTGCAGG+AGG | + | chr8.4:49227195-49227214 | None:intergenic | 50.0% | |
| AGCAAATCCACCTCCTGCAA+AGG | - | chr8.4:49227182-49227201 | MS.gene38966:intron | 50.0% | |
| CTGAAGCATGACCAGCTCTA+TGG | + | chr8.4:49227353-49227372 | None:intergenic | 50.0% | |
| GCAAATCCACCTCCTGCAAA+GGG | - | chr8.4:49227183-49227202 | MS.gene38966:intron | 50.0% | |
| GCACAGACAATCCTCGGATT+AGG | + | chr8.4:49226473-49226492 | None:intergenic | 50.0% | |
| GGACACTCTATGCGTTTGCA+GGG | + | chr8.4:49225933-49225952 | None:intergenic | 50.0% | |
| ! | GTGTGTGTTTGGTTTCACGG+TGG | + | chr8.4:49226895-49226914 | None:intergenic | 50.0% |
| ! | TGAGGAAGCTGCAGCATTGA+AGG | - | chr8.4:49227284-49227303 | MS.gene38966:CDS | 50.0% |
| ! | TTGCAGGAGGTGGATTTGCT+TGG | + | chr8.4:49227182-49227201 | None:intergenic | 50.0% |
| ATGAAGCACGGATGCGGACA+CGG | - | chr8.4:49226346-49226365 | MS.gene38966:intron | 55.0% | |
| GGAGCTATGAAGCACGGATG+CGG | - | chr8.4:49226340-49226359 | MS.gene38966:intron | 55.0% | |
| GGGACACTCTATGCGTTTGC+AGG | + | chr8.4:49225934-49225953 | None:intergenic | 55.0% | |
| TGAAGACCCTTTGCAGGAGG+TGG | + | chr8.4:49227192-49227211 | None:intergenic | 55.0% | |
| TGTCGCATACGCCTAATCCG+AGG | - | chr8.4:49226459-49226478 | MS.gene38966:intron | 55.0% | |
| ATGCGGACACGGACACGACA+CGG | - | chr8.4:49226357-49226376 | MS.gene38966:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 49225840 | 49227473 | 49225840 | ID=MS.gene38966 |
| chr8.4 | mRNA | 49225840 | 49227473 | 49225840 | ID=MS.gene38966.t1;Parent=MS.gene38966 |
| chr8.4 | exon | 49227235 | 49227473 | 49227235 | ID=MS.gene38966.t1.exon1;Parent=MS.gene38966.t1 |
| chr8.4 | CDS | 49227235 | 49227473 | 49227235 | ID=cds.MS.gene38966.t1;Parent=MS.gene38966.t1 |
| chr8.4 | exon | 49225840 | 49226275 | 49225840 | ID=MS.gene38966.t1.exon2;Parent=MS.gene38966.t1 |
| chr8.4 | CDS | 49225840 | 49226275 | 49225840 | ID=cds.MS.gene38966.t1;Parent=MS.gene38966.t1 |
| Gene Sequence |
| Protein sequence |
