AlfalfaGEDB | MS.gene38966

M. sativa cultivar XinJiangDaYe / MS.gene38966

KEGG: -
GO: -
PFAM: PF04832.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38966.t1	XP_013445472.1	95.1	224	11	0	1	224	4	227	2.30E-118	434.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38966.t1	Q9Y5Z4	34.4	186	106	5	35	214	20	195	1.7e-21	104.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38966.t1	I3S399	95.1	224	11	0	1	224	4	227	1.7e-118	434.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene38966	0.826191	3.11E-54	-1.69E-46
MS.gene049171	MS.gene38966	0.802667	5.03E-49	-1.69E-46
MS.gene049369	MS.gene38966	0.809739	1.63E-50	-1.69E-46
MS.gene049427	MS.gene38966	0.834228	3.38E-56	-1.69E-46
MS.gene049609	MS.gene38966	0.834772	2.47E-56	-1.69E-46
MS.gene049661	MS.gene38966	0.806011	1.01E-49	-1.69E-46
MS.gene049662	MS.gene38966	0.801163	1.03E-48	-1.69E-46
MS.gene049805	MS.gene38966	0.842451	2.56E-58	-1.69E-46
MS.gene050397	MS.gene38966	0.803561	3.29E-49	-1.69E-46
MS.gene050432	MS.gene38966	0.805397	1.36E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38966.t1	MTR_8g461390	95.089	224	11	0	1	224	4	227	6.39e-163	449
MS.gene38966.t1	MTR_4g105470	41.111	180	97	4	36	212	23	196	9.10e-33	118
MS.gene38966.t1	MTR_8g069755	35.096	208	121	5	10	212	5	203	3.07e-32	117

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene38966.t1	AT1G17100	60.891	202	74	2	22	218	30	231	2.82e-90	265
MS.gene38966.t1	AT1G78450	47.768	224	104	4	1	219	1	216	8.52e-71	216
MS.gene38966.t1	AT1G78460	41.126	231	110	5	1	217	1	219	3.42e-51	166

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Find 48 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTATGATGTCATAGAAGC+TGG	0.463929	8.4:-49227337	MS.gene38966:CDS
AAGCTACTAGAACTGGTTTC+AGG	0.240236	8.4:-49227237	MS.gene38966:CDS
AATGTCTTGAATAGGAGAAT+TGG	0.347748	8.4:+49227270	None:intergenic
ACAAATGAAGACTCACAAAA+TGG	0.387846	8.4:+49226162	None:intergenic
ACAAGAGAAATGTCTTGAAT+AGG	0.403479	8.4:+49227262	None:intergenic
ACAGTATTGCCGGTACTAAG+TGG	0.612734	8.4:-49225984	MS.gene38966:CDS
ACATGAAGACCCTTTGCAGG+AGG	0.641553	8.4:+49226099	None:intergenic
ACCCTATTATCATATTCAAA+AGG	0.401311	8.4:+49225892	None:intergenic
AGCAAATCCACCTCCTGCAA+AGG	0.509519	8.4:-49226109	MS.gene38966:CDS
AGCAGAAGACCACTTAGTAC+CGG	0.588835	8.4:+49225975	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGTCTTGAATAGGAGAAT+TGG	+	chr8.4:49226024-49226043	None:intergenic	30.0%
ACAAATGAAGACTCACAAAA+TGG	+	chr8.4:49227132-49227151	None:intergenic	30.0%
ACAAGAGAAATGTCTTGAAT+AGG	+	chr8.4:49226032-49226051	None:intergenic	30.0%
AGGCTATTTGATTACATTCA+GGG	-	chr8.4:49227036-49227055	MS.gene38966:intron	30.0%
ATAATAGGGTGAATGAGATT+TGG	-	chr8.4:49227412-49227431	MS.gene38966:CDS	30.0%
TAGGCTATTTGATTACATTC+AGG	-	chr8.4:49227035-49227054	MS.gene38966:intron	30.0%
TGAACTTCATGATCATTCAT+TGG	+	chr8.4:49226922-49226941	None:intergenic	30.0%
TTTGTCAAAGATACAGATGT+TGG	-	chr8.4:49227261-49227280	MS.gene38966:CDS	30.0%
AACTATGATGTCATAGAAGC+TGG	-	chr8.4:49225954-49225973	MS.gene38966:CDS	35.0%
AAGTTTAGTAACTCTTCGGA+TGG	+	chr8.4:49226994-49227013	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	49225840	49227473	49225840	ID=MS.gene38966
chr8.4	mRNA	49225840	49227473	49225840	ID=MS.gene38966.t1;Parent=MS.gene38966
chr8.4	exon	49227235	49227473	49227235	ID=MS.gene38966.t1.exon1;Parent=MS.gene38966.t1
chr8.4	CDS	49227235	49227473	49227235	ID=cds.MS.gene38966.t1;Parent=MS.gene38966.t1
chr8.4	exon	49225840	49226275	49225840	ID=MS.gene38966.t1.exon2;Parent=MS.gene38966.t1
chr8.4	CDS	49225840	49226275	49225840	ID=cds.MS.gene38966.t1;Parent=MS.gene38966.t1

Gene Sequence

>MS.gene38966

ATGGCTGTAACCACCACAACATTGAAGCTCTCACTGTTCTTGACTCTTATCTCAATTTCATTATCAGGTATTCTTTCATATGATATTATACCCTGCAAACGCATAGAGTGTCCCAACTATGATGTCATAGAAGCTGGAAATGGCTATGAAATCAGACGTTATAATTCGTCTGTTTGGATTTCCAATTCTCCTATTCAAGACATTTCTCTTGTTGAAGCTACTAGAACTGGTTTCAGGAGGTAATTTGTTTTTTTACTTAAGTTTTTTCAGTAATAGTTTAGGTTTTCGAATTCTATTTTCTATGAGTGCATTTGATTAGTATACAAAAAAATATGATGTTTAACTTGCATGTTTGATTGAAAAAACTAAATGTGTGTTTGCTTCTAGTGTGATTGGAATTGATTTTGAATTAATTGATTTTATTTCAAATAAGCTTATTGTGAAGTGCTTTATGTTTTGAAAGTTGAATACATATAAAAGGGAGTTGAAAAATCATGTCTGGAGCTATGAAGCACGGATGCGGACACGGACACGACACGGACACTGACACGCCGACACAGCTAATAATTTGAAAAAAAAAGCGCATAATTTAGTGTAATTACAAGTGTCGGTGTGTCGGTGTCGCATACGCCTAATCCGAGGATTGTCTGTGCTTCATAGGTCTGGAGTCAAAAGATACTAATTCCAACTTCAAGTTAGAATTAGTTGTAGCGACAGAATCAATTTTGATCGACGTCATCCAAACATGTCAAAATCAATTGTGTCTGAAATCACTTTTGACTCTTCCCACTTTTCACGTTGGGAAGTGTGTTTGCTTTTGCATTGACATAAATTGATTTTTAATGAATTCATTCTGTAAAATTATTGATTTTAATTAAAAGTAAGTTGAATGTGAAATGATTTATATTTGGATACACTCAAGTAAAAATGAGTTGAGCTATAAATTAAGCTTCAAGTTAGAACTTAGAACCCATTCTAGAGACAATTAATTTTTATCGAAATCATCCAAACATGCTAAAATCAATTGTTTCTGGAATCACTTTTGACACTTCCCACCGTGAAACCAAACACACACTAAACCAATGAATGATCATGAAGTTCATCTATACTGCAAAGAAGTTTTAATGAAGTGTTTGTGGTGCTGGATTGACCCATCCGAAGAGTTACTAAACTTGATTAATCTTTTTCTTTTTCTTAGGCTATTTGATTACATTCAGGGGAAGAACAACTACCAGCAAAAAATTGAGATGACAGCACCTGTTCTCTCTGAAGTCTTACCAAGTGATGGACCATTTTGTGAGTCTTCATTTGTTGTCAGCTTTTATGTACCAAAAGTGAACCAAGCAAATCCACCTCCTGCAAAGGGTCTTCATGTTCAAAGATGGAAAACTGTGTATGCAGCAGTTAGACAATTTGGTGGTTTTGTCAAAGATACAGATGTTGGTGAGGAAGCTGCAGCATTGAAGGACAGTATTGCCGGTACTAAGTGGTCTTCTGCTATTGAACAAAGCCATAGAGCTGGTCATGCTTCAGTTTACTCTGTGGCTCAGTACAATGCCCCTTTTGAATATGATAATAGGGTGAATGAGATTTGGTTCTTGTTTGATTTGGAAAATGGATTGCATTCTATGTGA

Protein sequence

>MS.gene38966.t1

MAVTTTTLKLSLFLTLISISLSGILSYDIIPCKRIECPNYDVIEAGNGYEIRRYNSSVWISNSPIQDISLVEATRTGFRRLFDYIQGKNNYQQKIEMTAPVLSEVLPSDGPFCESSFVVSFYVPKVNQANPPPAKGLHVQRWKTVYAAVRQFGGFVKDTDVGEEAAALKDSIAGTKWSSAIEQSHRAGHASVYSVAQYNAPFEYDNRVNEIWFLFDLENGLHSM