AlfalfaGEDB | MS.gene47338

M. sativa cultivar XinJiangDaYe / MS.gene47338

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47338.t1	XP_013468051.1	98.8	165	2	0	47	211	347	511	1.00E-88	336.3

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47338.t1	Q9LZS0	40.8	120	66	2	1	115	302	421	3.0e-15	83.6

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47338.t1	A0A072VKX9	98.8	165	2	0	47	211	347	511	7.6e-89	336.3

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene47338	0.830711	2.52E-55	-1.69E-46
MS.gene049255	MS.gene47338	0.812913	3.34E-51	-1.69E-46
MS.gene049341	MS.gene47338	0.830841	2.34E-55	-1.69E-46
MS.gene049501	MS.gene47338	0.803603	3.22E-49	-1.69E-46
MS.gene049821	MS.gene47338	0.811183	7.95E-51	-1.69E-46
MS.gene050020	MS.gene47338	0.877409	6.43E-69	-1.69E-46
MS.gene050303	MS.gene47338	0.829781	4.25E-55	-1.69E-46
MS.gene050438	MS.gene47338	0.817368	3.42E-52	-1.69E-46
MS.gene050586	MS.gene47338	0.803062	4.17E-49	-1.69E-46
MS.gene050807	MS.gene47338	0.857568	1.49E-62	-1.69E-46
MS.gene050808	MS.gene47338	0.835314	1.80E-56	-1.69E-46
MS.gene050815	MS.gene47338	0.872558	2.90E-67	-1.69E-46
MS.gene050844	MS.gene47338	0.80746	5.00E-50	-1.69E-46
MS.gene051180	MS.gene47338	0.816634	5.00E-52	-1.69E-46
MS.gene051243	MS.gene47338	0.812988	3.21E-51	-1.69E-46
MS.gene051247	MS.gene47338	0.809353	1.97E-50	-1.69E-46
MS.gene051265	MS.gene47338	0.804499	2.10E-49	-1.69E-46
MS.gene051328	MS.gene47338	0.84222	2.95E-58	-1.69E-46
MS.gene051344	MS.gene47338	0.803232	3.85E-49	-1.69E-46
MS.gene05134	MS.gene47338	0.802026	6.82E-49	-1.69E-46
MS.gene051388	MS.gene47338	0.813909	2.02E-51	-1.69E-46
MS.gene05157	MS.gene47338	0.80879	2.61E-50	-1.69E-46
MS.gene051626	MS.gene47338	0.819162	1.34E-52	-1.69E-46
MS.gene051700	MS.gene47338	0.800953	1.13E-48	-1.69E-46
MS.gene051719	MS.gene47338	0.8366	8.51E-57	-1.69E-46
MS.gene051720	MS.gene47338	0.827007	1.98E-54	-1.69E-46
MS.gene051789	MS.gene47338	0.812198	4.78E-51	-1.69E-46
MS.gene052012	MS.gene47338	0.812204	4.77E-51	-1.69E-46
MS.gene052020	MS.gene47338	0.807171	5.76E-50	-1.69E-46
MS.gene052133	MS.gene47338	0.807332	5.32E-50	-1.69E-46
MS.gene052519	MS.gene47338	0.802129	6.50E-49	-1.69E-46
MS.gene052611	MS.gene47338	0.809108	2.23E-50	-1.69E-46
MS.gene052613	MS.gene47338	0.803431	3.50E-49	-1.69E-46
MS.gene052665	MS.gene47338	0.834526	2.85E-56	-1.69E-46
MS.gene052863	MS.gene47338	0.826759	2.27E-54	-1.69E-46
MS.gene052896	MS.gene47338	0.806539	7.83E-50	-1.69E-46
MS.gene053008	MS.gene47338	0.845438	4.06E-59	-1.69E-46
MS.gene053074	MS.gene47338	0.848108	7.56E-60	-1.69E-46
MS.gene053221	MS.gene47338	0.801911	7.20E-49	-1.69E-46
MS.gene053226	MS.gene47338	0.820554	6.45E-53	-1.69E-46
MS.gene053630	MS.gene47338	0.824479	7.89E-54	-1.69E-46
MS.gene054185	MS.gene47338	0.804106	2.53E-49	-1.69E-46
MS.gene054472	MS.gene47338	0.817435	3.30E-52	-1.69E-46
MS.gene05462	MS.gene47338	0.800563	1.36E-48	-1.69E-46
MS.gene054658	MS.gene47338	0.805421	1.35E-49	-1.69E-46
MS.gene054713	MS.gene47338	0.80559	1.24E-49	-1.69E-46
MS.gene054775	MS.gene47338	0.800542	1.37E-48	-1.69E-46
MS.gene055356	MS.gene47338	0.802585	5.23E-49	-1.69E-46
MS.gene055358	MS.gene47338	0.806612	7.56E-50	-1.69E-46
MS.gene055465	MS.gene47338	0.820893	5.39E-53	-1.69E-46
MS.gene055466	MS.gene47338	0.852781	3.69E-61	-1.69E-46
MS.gene055468	MS.gene47338	0.843845	1.09E-58	-1.69E-46
MS.gene055512	MS.gene47338	0.819041	1.43E-52	-1.69E-46
MS.gene055608	MS.gene47338	0.852978	3.24E-61	-1.69E-46
MS.gene055818	MS.gene47338	0.829665	4.53E-55	-1.69E-46
MS.gene056069	MS.gene47338	-0.801678	8.04E-49	-1.69E-46
MS.gene056173	MS.gene47338	0.807959	3.92E-50	-1.69E-46
MS.gene056215	MS.gene47338	0.811727	6.06E-51	-1.69E-46
MS.gene056553	MS.gene47338	0.80324	3.83E-49	-1.69E-46
MS.gene056595	MS.gene47338	0.80072	1.26E-48	-1.69E-46
MS.gene056643	MS.gene47338	0.807373	5.22E-50	-1.69E-46
MS.gene056760	MS.gene47338	0.820841	5.54E-53	-1.69E-46
MS.gene057057	MS.gene47338	0.804629	1.97E-49	-1.69E-46
MS.gene057060	MS.gene47338	0.847404	1.18E-59	-1.69E-46
MS.gene057444	MS.gene47338	0.810597	1.07E-50	-1.69E-46
MS.gene057693	MS.gene47338	0.848052	7.83E-60	-1.69E-46
MS.gene058084	MS.gene47338	0.807684	4.48E-50	-1.69E-46
MS.gene058168	MS.gene47338	0.832155	1.11E-55	-1.69E-46
MS.gene058625	MS.gene47338	0.803675	3.11E-49	-1.69E-46
MS.gene058906	MS.gene47338	0.804325	2.28E-49	-1.69E-46
MS.gene059006	MS.gene47338	0.836033	1.19E-56	-1.69E-46
MS.gene059151	MS.gene47338	0.811286	7.55E-51	-1.69E-46
MS.gene05954	MS.gene47338	0.806364	8.53E-50	-1.69E-46
MS.gene059607	MS.gene47338	0.80545	1.33E-49	-1.69E-46
MS.gene059842	MS.gene47338	0.822034	2.94E-53	-1.69E-46
MS.gene059937	MS.gene47338	0.835699	1.44E-56	-1.69E-46
MS.gene060137	MS.gene47338	-0.813817	2.11E-51	-1.69E-46
MS.gene060322	MS.gene47338	0.820305	7.36E-53	-1.69E-46
MS.gene060429	MS.gene47338	0.840533	8.21E-58	-1.69E-46
MS.gene060587	MS.gene47338	0.810334	1.21E-50	-1.69E-46
MS.gene060802	MS.gene47338	0.809412	1.92E-50	-1.69E-46
MS.gene060803	MS.gene47338	0.861556	9.44E-64	-1.69E-46
MS.gene060907	MS.gene47338	0.802124	6.51E-49	-1.69E-46
MS.gene061176	MS.gene47338	0.810431	1.16E-50	-1.69E-46
MS.gene061177	MS.gene47338	0.81024	1.27E-50	-1.69E-46
MS.gene061178	MS.gene47338	0.81007	1.38E-50	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47338.t1	MTR_1g060990	99.052	211	2	0	1	211	301	511	5.53e-155	439
MS.gene47338.t1	MTR_1g098900	40.000	70	42	0	1	70	288	357	5.27e-12	64.7
MS.gene47338.t1	MTR_1g492790	36.000	75	47	1	1	74	311	385	6.99e-12	64.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47338.t1	AT3G10000	36.771	223	116	7	1	211	261	470	4.17e-30	115
MS.gene47338.t1	AT3G10000	36.771	223	116	7	1	211	271	480	4.93e-30	115
MS.gene47338.t1	AT5G03680	45.000	120	61	2	1	115	302	421	8.46e-25	101
MS.gene47338.t1	AT1G76880	42.857	70	40	0	1	70	262	331	8.63e-11	61.2

Find 0 sgRNAs with CRISPR-Local

Find 49 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATTCAAAATCAAAATGAAGA+TGG	+	6959:33479-33498	MS.gene47338:CDS	20.0%
!!	TTCAAAATCAAAATGAAGAT+GGG	+	6959:33480-33499	MS.gene47338:CDS	20.0%
!!	ATGATTCTAAAGAAGGAAAT+AGG	+	6959:33555-33574	MS.gene47338:CDS	25.0%
!!	TGGAAAAAGAACAAAAGTTT+TGG	+	6959:33321-33340	MS.gene47338:CDS	25.0%
	AAACTACAAAGGAATGATCA+TGG	+	6959:33680-33699	MS.gene47338:CDS	30.0%
	AATGTTGGAAATGTTGCTAA+TGG	+	6959:33722-33741	MS.gene47338:CDS	30.0%
	AGAAATGATTAAGGTTGAAG+AGG	+	6959:33415-33434	MS.gene47338:CDS	30.0%
	ATGAGATTGTGAAACTACAA+AGG	+	6959:33669-33688	MS.gene47338:CDS	30.0%
	TTCTGATAATTGTACTCCAA+GGG	+	6959:33532-33551	MS.gene47338:CDS	30.0%
	TTTCCAACATTAGAATCAGA+AGG	-	6959:33713-33732	MS.gene47338:intergenic	30.0%
	TTTCCTTTCATGATTAGTGA+GGG	+	6959:33755-33774	MS.gene47338:CDS	30.0%
!	AAGGGTGTAAATGTAATAAC+TGG	+	6959:33449-33468	MS.gene47338:CDS	30.0%
!!	ATGGAAGCTTTGAAGAATTT+AGG	+	6959:33386-33405	MS.gene47338:CDS	30.0%
	AGAAGGAAATAGGAAGAGAA+AGG	+	6959:33565-33584	MS.gene47338:CDS	35.0%
	AGGAGGTAGAGAAATGATTA+AGG	+	6959:33406-33425	MS.gene47338:CDS	35.0%
	ATCTTGAATAGTACTGTGAG+AGG	+	6959:33509-33528	MS.gene47338:CDS	35.0%
	CAATGCTCTATGTACAATCA+AGG	+	6959:33614-33633	MS.gene47338:CDS	35.0%
	CTTTCCTTTCATGATTAGTG+AGG	+	6959:33754-33773	MS.gene47338:CDS	35.0%
	GTTCTGATAATTGTACTCCA+AGG	+	6959:33531-33550	MS.gene47338:CDS	35.0%
	TCACCTTCTGATTCTAATGT+TGG	+	6959:33707-33726	MS.gene47338:CDS	35.0%
	TCTATGTACAATCAAGGAAG+TGG	+	6959:33620-33639	MS.gene47338:CDS	35.0%
!	GGAAATTTGTGGGAGAATTT+TGG	+	6959:33779-33798	MS.gene47338:CDS	35.0%
!	TTGTTCTTTTTCCACCCTTT+TGG	-	6959:33315-33334	MS.gene47338:intergenic	35.0%
!!	GAAGCTTTGAAGAATTTAGG+AGG	+	6959:33389-33408	MS.gene47338:CDS	35.0%
	GAAGAGGCTCATGATCATAA+GGG	+	6959:33431-33450	MS.gene47338:CDS	40.0%
	TAAGCTTGTGAAGACACTTG+AGG	+	6959:33238-33257	MS.gene47338:CDS	40.0%
	TAGTGAGGGTGGAAATTTGT+GGG	+	6959:33769-33788	MS.gene47338:CDS	40.0%
	TGAAGAGGCTCATGATCATA+AGG	+	6959:33430-33449	MS.gene47338:CDS	40.0%
	TTAGTGAGGGTGGAAATTTG+TGG	+	6959:33768-33787	MS.gene47338:CDS	40.0%
!	CCAAGGGATGATTCTAAAGA+AGG	+	6959:33548-33567	MS.gene47338:CDS	40.0%
!	TTTGGAGTAATGAGAGAGCA+TGG	+	6959:33339-33358	MS.gene47338:CDS	40.0%
!!	CCTTCTTTAGAATCATCCCT+TGG	-	6959:33551-33570	MS.gene47338:intergenic	40.0%
	AGAAGAGTGGAGGAAACAAG+AGG	+	6959:33289-33308	MS.gene47338:CDS	45.0%
	CCACCCTCACTAATCATGAA+AGG	-	6959:33761-33780	MS.gene47338:intergenic	45.0%
	CCTTTCATGATTAGTGAGGG+TGG	+	6959:33758-33777	MS.gene47338:CDS	45.0%
	CGTTAAGAGAAGAAGAGTGG+AGG	+	6959:33279-33298	MS.gene47338:CDS	45.0%
	GACACTTGAGGACAAGGAAA+AGG	+	6959:33250-33269	MS.gene47338:CDS	45.0%
	GAGGAAACAAGAGGCCAAAA+GGG	+	6959:33298-33317	MS.gene47338:CDS	45.0%
	TGAGGACAAGGAAAAGGAGA+GGG	+	6959:33256-33275	MS.gene47338:CDS	45.0%
	TGTGAAGACACTTGAGGACA+AGG	+	6959:33244-33263	MS.gene47338:CDS	45.0%
	TTGAGGACAAGGAAAAGGAG+AGG	+	6959:33255-33274	MS.gene47338:CDS	45.0%
!	AGAGAGCATGGATTGAAGCA+AGG	+	6959:33351-33370	MS.gene47338:CDS	45.0%
!	GAGAGCATGGATTGAAGCAA+GGG	+	6959:33352-33371	MS.gene47338:CDS	45.0%
!!	AGCAAGGGATGCTGCTTTAA+TGG	+	6959:33367-33386	MS.gene47338:CDS	45.0%
	GAAACAAGAGGCCAAAAGGG+TGG	+	6959:33301-33320	MS.gene47338:CDS	50.0%
	GAAGCTTGTGGAGAAGCAAG+AGG	+	6959:33205-33224	MS.gene47338:CDS	50.0%
	GGAGGAAACAAGAGGCCAAA+AGG	+	6959:33297-33316	MS.gene47338:CDS	50.0%
	GGGCGTTAAGAGAAGAAGAG+TGG	+	6959:33276-33295	MS.gene47338:CDS	50.0%
	TTGTGGAGAAGCAAGAGGAG+TGG	+	6959:33210-33229	MS.gene47338:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
6959	gene	33200	33835	33200	ID=MS.gene47338
6959	mRNA	33200	33835	33200	ID=MS.gene47338.t1;Parent=MS.gene47338
6959	exon	33200	33835	33200	ID=MS.gene47338.t1.exon1;Parent=MS.gene47338.t1
6959	CDS	33200	33835	33200	ID=cds.MS.gene47338.t1;Parent=MS.gene47338.t1

Gene Sequence

>MS.gene47338

ATGAAGAAGCTTGTGGAGAAGCAAGAGGAGTGGTTGAGTAAGCTTGTGAAGACACTTGAGGACAAGGAAAAGGAGAGGGCGTTAAGAGAAGAAGAGTGGAGGAAACAAGAGGCCAAAAGGGTGGAAAAAGAACAAAAGTTTTGGAGTAATGAGAGAGCATGGATTGAAGCAAGGGATGCTGCTTTAATGGAAGCTTTGAAGAATTTAGGAGGTAGAGAAATGATTAAGGTTGAAGAGGCTCATGATCATAAGGGTGTAAATGTAATAACTGGAGCAGAGATTCAAAATCAAAATGAAGATGGGAGTGAAATCTTGAATAGTACTGTGAGAGGTTCTGATAATTGTACTCCAAGGGATGATTCTAAAGAAGGAAATAGGAAGAGAAAGGAGAGTTTTTACTTCAACAATAATGAACAATGCTCTATGTACAATCAAGGAAGTGGTTATTGTGATGTTAATGATCAAAGAGATGAGATTGTGAAACTACAAAGGAATGATCATGGTTCTTCACCTTCTGATTCTAATGTTGGAAATGTTGCTAATGGTGATACTTGCTTTCCTTTCATGATTAGTGAGGGTGGAAATTTGTGGGAGAATTTTGGCTTGAAGATCAATAAAGTAAACCAAAACCATTAA

Protein sequence

>MS.gene47338.t1

MKKLVEKQEEWLSKLVKTLEDKEKERALREEEWRKQEAKRVEKEQKFWSNERAWIEARDAALMEALKNLGGREMIKVEEAHDHKGVNVITGAEIQNQNEDGSEILNSTVRGSDNCTPRDDSKEGNRKRKESFYFNNNEQCSMYNQGSGYCDVNDQRDEIVKLQRNDHGSSPSDSNVGNVANGDTCFPFMISEGGNLWENFGLKINKVNQNH