AlfalfaGEDB | MS.gene47339

M. sativa cultivar XinJiangDaYe / MS.gene47339

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47339.t1	XP_013468051.1	98.8	165	2	0	47	211	347	511	1.00E-88	336.3

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47339.t1	Q9LZS0	40.8	120	66	2	1	115	302	421	3.0e-15	83.6

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47339.t1	A0A072VKX9	98.8	165	2	0	47	211	347	511	7.6e-89	336.3

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene47339	0.829716	4.41E-55	-1.69E-46
MS.gene049255	MS.gene47339	0.812359	4.41E-51	-1.69E-46
MS.gene049341	MS.gene47339	0.830055	3.64E-55	-1.69E-46
MS.gene049501	MS.gene47339	0.804086	2.56E-49	-1.69E-46
MS.gene049821	MS.gene47339	0.810242	1.27E-50	-1.69E-46
MS.gene050020	MS.gene47339	0.875805	2.31E-68	-1.69E-46
MS.gene050303	MS.gene47339	0.831373	1.73E-55	-1.69E-46
MS.gene050438	MS.gene47339	0.817681	2.91E-52	-1.69E-46
MS.gene050586	MS.gene47339	0.802005	6.89E-49	-1.69E-46
MS.gene050807	MS.gene47339	0.856877	2.39E-62	-1.69E-46
MS.gene050808	MS.gene47339	0.834486	2.92E-56	-1.69E-46
MS.gene050815	MS.gene47339	0.873287	1.65E-67	-1.69E-46
MS.gene050844	MS.gene47339	0.808534	2.95E-50	-1.69E-46
MS.gene051180	MS.gene47339	0.815465	9.12E-52	-1.69E-46
MS.gene051243	MS.gene47339	0.812569	3.97E-51	-1.69E-46
MS.gene051247	MS.gene47339	0.808325	3.27E-50	-1.69E-46
MS.gene051265	MS.gene47339	0.804886	1.74E-49	-1.69E-46
MS.gene051328	MS.gene47339	0.841416	4.81E-58	-1.69E-46
MS.gene051344	MS.gene47339	0.803338	3.66E-49	-1.69E-46
MS.gene05134	MS.gene47339	0.802328	5.91E-49	-1.69E-46
MS.gene051388	MS.gene47339	0.814136	1.80E-51	-1.69E-46
MS.gene05157	MS.gene47339	0.806492	8.01E-50	-1.69E-46
MS.gene051626	MS.gene47339	0.820667	6.08E-53	-1.69E-46
MS.gene051700	MS.gene47339	0.800516	1.39E-48	-1.69E-46
MS.gene051719	MS.gene47339	0.835041	2.11E-56	-1.69E-46
MS.gene051720	MS.gene47339	0.824648	7.20E-54	-1.69E-46
MS.gene051789	MS.gene47339	0.811988	5.31E-51	-1.69E-46
MS.gene052012	MS.gene47339	0.81217	4.85E-51	-1.69E-46
MS.gene052020	MS.gene47339	0.806234	9.08E-50	-1.69E-46
MS.gene052133	MS.gene47339	0.806428	8.26E-50	-1.69E-46
MS.gene052519	MS.gene47339	0.802344	5.87E-49	-1.69E-46
MS.gene052611	MS.gene47339	0.808077	3.70E-50	-1.69E-46
MS.gene052613	MS.gene47339	0.805318	1.41E-49	-1.69E-46
MS.gene052665	MS.gene47339	0.833515	5.10E-56	-1.69E-46
MS.gene052863	MS.gene47339	0.826685	2.37E-54	-1.69E-46
MS.gene052896	MS.gene47339	0.806762	7.03E-50	-1.69E-46
MS.gene053008	MS.gene47339	0.844828	5.94E-59	-1.69E-46
MS.gene053074	MS.gene47339	0.846626	1.93E-59	-1.69E-46
MS.gene053221	MS.gene47339	0.802444	5.59E-49	-1.69E-46
MS.gene053226	MS.gene47339	0.818552	1.85E-52	-1.69E-46
MS.gene053630	MS.gene47339	0.825072	5.72E-54	-1.69E-46
MS.gene054185	MS.gene47339	0.805329	1.41E-49	-1.69E-46
MS.gene054472	MS.gene47339	0.818162	2.26E-52	-1.69E-46
MS.gene054658	MS.gene47339	0.805574	1.25E-49	-1.69E-46
MS.gene054713	MS.gene47339	0.806167	9.38E-50	-1.69E-46
MS.gene055356	MS.gene47339	0.801932	7.13E-49	-1.69E-46
MS.gene055358	MS.gene47339	0.806471	8.10E-50	-1.69E-46
MS.gene055465	MS.gene47339	0.81965	1.04E-52	-1.69E-46
MS.gene055466	MS.gene47339	0.85218	5.47E-61	-1.69E-46
MS.gene055468	MS.gene47339	0.843824	1.10E-58	-1.69E-46
MS.gene055512	MS.gene47339	0.817932	2.55E-52	-1.69E-46
MS.gene055608	MS.gene47339	0.854749	1.00E-61	-1.69E-46
MS.gene055818	MS.gene47339	0.828969	6.69E-55	-1.69E-46
MS.gene056069	MS.gene47339	-0.803091	4.11E-49	-1.69E-46
MS.gene056173	MS.gene47339	0.807154	5.81E-50	-1.69E-46
MS.gene056215	MS.gene47339	0.810683	1.02E-50	-1.69E-46
MS.gene056553	MS.gene47339	0.802392	5.73E-49	-1.69E-46
MS.gene056643	MS.gene47339	0.80719	5.71E-50	-1.69E-46
MS.gene056760	MS.gene47339	0.821721	3.47E-53	-1.69E-46
MS.gene057057	MS.gene47339	0.806266	8.94E-50	-1.69E-46
MS.gene057060	MS.gene47339	0.846517	2.07E-59	-1.69E-46
MS.gene057260	MS.gene47339	0.801134	1.04E-48	-1.69E-46
MS.gene057444	MS.gene47339	0.808815	2.57E-50	-1.69E-46
MS.gene057693	MS.gene47339	0.846971	1.55E-59	-1.69E-46
MS.gene058084	MS.gene47339	0.808839	2.54E-50	-1.69E-46
MS.gene058168	MS.gene47339	0.832221	1.07E-55	-1.69E-46
MS.gene058625	MS.gene47339	0.80259	5.22E-49	-1.69E-46
MS.gene058906	MS.gene47339	0.806147	9.47E-50	-1.69E-46
MS.gene059006	MS.gene47339	0.834612	2.71E-56	-1.69E-46
MS.gene059151	MS.gene47339	0.812096	5.03E-51	-1.69E-46
MS.gene05954	MS.gene47339	0.806742	7.10E-50	-1.69E-46
MS.gene059607	MS.gene47339	0.802784	4.76E-49	-1.69E-46
MS.gene059842	MS.gene47339	0.821282	4.39E-53	-1.69E-46
MS.gene059937	MS.gene47339	0.834767	2.48E-56	-1.69E-46
MS.gene060137	MS.gene47339	-0.813001	3.19E-51	-1.69E-46
MS.gene060322	MS.gene47339	0.820066	8.35E-53	-1.69E-46
MS.gene060429	MS.gene47339	0.840937	6.44E-58	-1.69E-46
MS.gene060587	MS.gene47339	0.80898	2.37E-50	-1.69E-46
MS.gene060802	MS.gene47339	0.80816	3.55E-50	-1.69E-46
MS.gene060803	MS.gene47339	0.86035	2.20E-63	-1.69E-46
MS.gene060907	MS.gene47339	0.803804	2.93E-49	-1.69E-46
MS.gene061176	MS.gene47339	0.808431	3.11E-50	-1.69E-46
MS.gene061177	MS.gene47339	0.808251	3.39E-50	-1.69E-46
MS.gene061178	MS.gene47339	0.808072	3.71E-50	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47339.t1	MTR_1g060990	99.052	211	2	0	1	211	301	511	5.53e-155	439
MS.gene47339.t1	MTR_1g098900	40.000	70	42	0	1	70	288	357	5.27e-12	64.7
MS.gene47339.t1	MTR_1g492790	36.000	75	47	1	1	74	311	385	6.99e-12	64.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47339.t1	AT3G10000	36.771	223	116	7	1	211	261	470	4.17e-30	115
MS.gene47339.t1	AT3G10000	36.771	223	116	7	1	211	271	480	4.93e-30	115
MS.gene47339.t1	AT5G03680	45.000	120	61	2	1	115	302	421	8.46e-25	101
MS.gene47339.t1	AT1G76880	42.857	70	40	0	1	70	262	331	8.63e-11	61.2

Find 0 sgRNAs with CRISPR-Local

Find 49 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATTCAAAATCAAAATGAAGA+TGG	+	6963:6687-6706	MS.gene47339:CDS	20.0%
!!	TTCAAAATCAAAATGAAGAT+GGG	+	6963:6688-6707	MS.gene47339:CDS	20.0%
!!	ATGATTCTAAAGAAGGAAAT+AGG	+	6963:6763-6782	MS.gene47339:CDS	25.0%
!!	TGGAAAAAGAACAAAAGTTT+TGG	+	6963:6529-6548	MS.gene47339:CDS	25.0%
	AAACTACAAAGGAATGATCA+TGG	+	6963:6888-6907	MS.gene47339:CDS	30.0%
	AATGTTGGAAATGTTGCTAA+TGG	+	6963:6930-6949	MS.gene47339:CDS	30.0%
	AGAAATGATTAAGGTTGAAG+AGG	+	6963:6623-6642	MS.gene47339:CDS	30.0%
	ATGAGATTGTGAAACTACAA+AGG	+	6963:6877-6896	MS.gene47339:CDS	30.0%
	TTCTGATAATTGTACTCCAA+GGG	+	6963:6740-6759	MS.gene47339:CDS	30.0%
	TTTCCAACATTAGAATCAGA+AGG	-	6963:6921-6940	MS.gene47339:intergenic	30.0%
	TTTCCTTTCATGATTAGTGA+GGG	+	6963:6963-6982	MS.gene47339:CDS	30.0%
!	AAGGGTGTAAATGTAATAAC+TGG	+	6963:6657-6676	MS.gene47339:CDS	30.0%
!!	ATGGAAGCTTTGAAGAATTT+AGG	+	6963:6594-6613	MS.gene47339:CDS	30.0%
	AGAAGGAAATAGGAAGAGAA+AGG	+	6963:6773-6792	MS.gene47339:CDS	35.0%
	AGGAGGTAGAGAAATGATTA+AGG	+	6963:6614-6633	MS.gene47339:CDS	35.0%
	ATCTTGAATAGTACTGTGAG+AGG	+	6963:6717-6736	MS.gene47339:CDS	35.0%
	CAATGCTCTATGTACAATCA+AGG	+	6963:6822-6841	MS.gene47339:CDS	35.0%
	CTTTCCTTTCATGATTAGTG+AGG	+	6963:6962-6981	MS.gene47339:CDS	35.0%
	GTTCTGATAATTGTACTCCA+AGG	+	6963:6739-6758	MS.gene47339:CDS	35.0%
	TCACCTTCTGATTCTAATGT+TGG	+	6963:6915-6934	MS.gene47339:CDS	35.0%
	TCTATGTACAATCAAGGAAG+TGG	+	6963:6828-6847	MS.gene47339:CDS	35.0%
!	GGAAATTTGTGGGAGAATTT+TGG	+	6963:6987-7006	MS.gene47339:CDS	35.0%
!	TTGTTCTTTTTCCACCCTTT+TGG	-	6963:6523-6542	MS.gene47339:intergenic	35.0%
!!	GAAGCTTTGAAGAATTTAGG+AGG	+	6963:6597-6616	MS.gene47339:CDS	35.0%
	GAAGAGGCTCATGATCATAA+GGG	+	6963:6639-6658	MS.gene47339:CDS	40.0%
	TAAGCTTGTGAAGACACTTG+AGG	+	6963:6446-6465	MS.gene47339:CDS	40.0%
	TAGTGAGGGTGGAAATTTGT+GGG	+	6963:6977-6996	MS.gene47339:CDS	40.0%
	TGAAGAGGCTCATGATCATA+AGG	+	6963:6638-6657	MS.gene47339:CDS	40.0%
	TTAGTGAGGGTGGAAATTTG+TGG	+	6963:6976-6995	MS.gene47339:CDS	40.0%
!	CCAAGGGATGATTCTAAAGA+AGG	+	6963:6756-6775	MS.gene47339:CDS	40.0%
!	TTTGGAGTAATGAGAGAGCA+TGG	+	6963:6547-6566	MS.gene47339:CDS	40.0%
!!	CCTTCTTTAGAATCATCCCT+TGG	-	6963:6759-6778	MS.gene47339:intergenic	40.0%
	AGAAGAGTGGAGGAAACAAG+AGG	+	6963:6497-6516	MS.gene47339:CDS	45.0%
	CCACCCTCACTAATCATGAA+AGG	-	6963:6969-6988	MS.gene47339:intergenic	45.0%
	CCTTTCATGATTAGTGAGGG+TGG	+	6963:6966-6985	MS.gene47339:CDS	45.0%
	CGTTAAGAGAAGAAGAGTGG+AGG	+	6963:6487-6506	MS.gene47339:CDS	45.0%
	GACACTTGAGGACAAGGAAA+AGG	+	6963:6458-6477	MS.gene47339:CDS	45.0%
	GAGGAAACAAGAGGCCAAAA+GGG	+	6963:6506-6525	MS.gene47339:CDS	45.0%
	TGAGGACAAGGAAAAGGAGA+GGG	+	6963:6464-6483	MS.gene47339:CDS	45.0%
	TGTGAAGACACTTGAGGACA+AGG	+	6963:6452-6471	MS.gene47339:CDS	45.0%
	TTGAGGACAAGGAAAAGGAG+AGG	+	6963:6463-6482	MS.gene47339:CDS	45.0%
!	AGAGAGCATGGATTGAAGCA+AGG	+	6963:6559-6578	MS.gene47339:CDS	45.0%
!	GAGAGCATGGATTGAAGCAA+GGG	+	6963:6560-6579	MS.gene47339:CDS	45.0%
!!	AGCAAGGGATGCTGCTTTAA+TGG	+	6963:6575-6594	MS.gene47339:CDS	45.0%
	GAAACAAGAGGCCAAAAGGG+TGG	+	6963:6509-6528	MS.gene47339:CDS	50.0%
	GAAGCTTGTGGAGAAGCAAG+AGG	+	6963:6413-6432	MS.gene47339:CDS	50.0%
	GGAGGAAACAAGAGGCCAAA+AGG	+	6963:6505-6524	MS.gene47339:CDS	50.0%
	GGGCGTTAAGAGAAGAAGAG+TGG	+	6963:6484-6503	MS.gene47339:CDS	50.0%
	TTGTGGAGAAGCAAGAGGAG+TGG	+	6963:6418-6437	MS.gene47339:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
6963	gene	6408	7043	6408	ID=MS.gene47339
6963	mRNA	6408	7043	6408	ID=MS.gene47339.t1;Parent=MS.gene47339
6963	exon	6408	7043	6408	ID=MS.gene47339.t1.exon1;Parent=MS.gene47339.t1
6963	CDS	6408	7043	6408	ID=cds.MS.gene47339.t1;Parent=MS.gene47339.t1

Gene Sequence

>MS.gene47339

ATGAAGAAGCTTGTGGAGAAGCAAGAGGAGTGGTTGAGTAAGCTTGTGAAGACACTTGAGGACAAGGAAAAGGAGAGGGCGTTAAGAGAAGAAGAGTGGAGGAAACAAGAGGCCAAAAGGGTGGAAAAAGAACAAAAGTTTTGGAGTAATGAGAGAGCATGGATTGAAGCAAGGGATGCTGCTTTAATGGAAGCTTTGAAGAATTTAGGAGGTAGAGAAATGATTAAGGTTGAAGAGGCTCATGATCATAAGGGTGTAAATGTAATAACTGGAGCAGAGATTCAAAATCAAAATGAAGATGGGAGTGAAATCTTGAATAGTACTGTGAGAGGTTCTGATAATTGTACTCCAAGGGATGATTCTAAAGAAGGAAATAGGAAGAGAAAGGAGAGTTTTTACTTCAACAATAATGAACAATGCTCTATGTACAATCAAGGAAGTGGTTATTGTGATGTTAATGATCAAAGAGATGAGATTGTGAAACTACAAAGGAATGATCATGGTTCTTCACCTTCTGATTCTAATGTTGGAAATGTTGCTAATGGTGATACTTGCTTTCCTTTCATGATTAGTGAGGGTGGAAATTTGTGGGAGAATTTTGGCTTGAAGATCAATAAAGTAAACCAAAACCATTAA

Protein sequence

>MS.gene47339.t1

MKKLVEKQEEWLSKLVKTLEDKEKERALREEEWRKQEAKRVEKEQKFWSNERAWIEARDAALMEALKNLGGREMIKVEEAHDHKGVNVITGAEIQNQNEDGSEILNSTVRGSDNCTPRDDSKEGNRKRKESFYFNNNEQCSMYNQGSGYCDVNDQRDEIVKLQRNDHGSSPSDSNVGNVANGDTCFPFMISEGGNLWENFGLKINKVNQNH