AlfalfaGEDB | MS.gene47340

M. sativa cultivar XinJiangDaYe / MS.gene47340

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47340.t1	XP_013468051.1	98.8	165	2	0	47	211	347	511	1.00E-88	336.3

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47340.t1	Q9LZS0	28.7	293	115	9	1	206	302	587	1.2e-16	88.2

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47340.t1	A0A072VKX9	98.8	165	2	0	47	211	347	511	7.6e-89	336.3

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene47340	0.830422	2.96E-55	-1.69E-46
MS.gene049255	MS.gene47340	0.812971	3.24E-51	-1.69E-46
MS.gene049341	MS.gene47340	0.8306	2.68E-55	-1.69E-46
MS.gene049501	MS.gene47340	0.803838	2.88E-49	-1.69E-46
MS.gene049821	MS.gene47340	0.811129	8.17E-51	-1.69E-46
MS.gene050020	MS.gene47340	0.877291	7.07E-69	-1.69E-46
MS.gene050303	MS.gene47340	0.829851	4.09E-55	-1.69E-46
MS.gene050438	MS.gene47340	0.817296	3.55E-52	-1.69E-46
MS.gene050586	MS.gene47340	0.802896	4.51E-49	-1.69E-46
MS.gene050807	MS.gene47340	0.857655	1.41E-62	-1.69E-46
MS.gene050808	MS.gene47340	0.83542	1.70E-56	-1.69E-46
MS.gene050815	MS.gene47340	0.87254	2.94E-67	-1.69E-46
MS.gene050844	MS.gene47340	0.80775	4.34E-50	-1.69E-46
MS.gene051180	MS.gene47340	0.816782	4.63E-52	-1.69E-46
MS.gene051243	MS.gene47340	0.813114	3.02E-51	-1.69E-46
MS.gene051247	MS.gene47340	0.808986	2.36E-50	-1.69E-46
MS.gene051265	MS.gene47340	0.804517	2.08E-49	-1.69E-46
MS.gene051328	MS.gene47340	0.842134	3.11E-58	-1.69E-46
MS.gene051344	MS.gene47340	0.803211	3.88E-49	-1.69E-46
MS.gene05134	MS.gene47340	0.802109	6.56E-49	-1.69E-46
MS.gene051388	MS.gene47340	0.813891	2.03E-51	-1.69E-46
MS.gene05157	MS.gene47340	0.808399	3.16E-50	-1.69E-46
MS.gene051626	MS.gene47340	0.819065	1.41E-52	-1.69E-46
MS.gene051700	MS.gene47340	0.800976	1.12E-48	-1.69E-46
MS.gene051719	MS.gene47340	0.836662	8.20E-57	-1.69E-46
MS.gene051720	MS.gene47340	0.827084	1.90E-54	-1.69E-46
MS.gene051789	MS.gene47340	0.811993	5.30E-51	-1.69E-46
MS.gene052012	MS.gene47340	0.811911	5.53E-51	-1.69E-46
MS.gene052020	MS.gene47340	0.806979	6.32E-50	-1.69E-46
MS.gene052133	MS.gene47340	0.806984	6.31E-50	-1.69E-46
MS.gene052519	MS.gene47340	0.802339	5.88E-49	-1.69E-46
MS.gene052611	MS.gene47340	0.809155	2.18E-50	-1.69E-46
MS.gene052613	MS.gene47340	0.803491	3.40E-49	-1.69E-46
MS.gene052665	MS.gene47340	0.834246	3.35E-56	-1.69E-46
MS.gene052863	MS.gene47340	0.826932	2.07E-54	-1.69E-46
MS.gene052896	MS.gene47340	0.806281	8.88E-50	-1.69E-46
MS.gene053008	MS.gene47340	0.845179	4.77E-59	-1.69E-46
MS.gene053074	MS.gene47340	0.847819	9.08E-60	-1.69E-46
MS.gene053221	MS.gene47340	0.801998	6.91E-49	-1.69E-46
MS.gene053226	MS.gene47340	0.820254	7.56E-53	-1.69E-46
MS.gene053630	MS.gene47340	0.824346	8.49E-54	-1.69E-46
MS.gene054185	MS.gene47340	0.803689	3.09E-49	-1.69E-46
MS.gene054472	MS.gene47340	0.817719	2.85E-52	-1.69E-46
MS.gene05462	MS.gene47340	0.800339	1.51E-48	-1.69E-46
MS.gene054658	MS.gene47340	0.805626	1.22E-49	-1.69E-46
MS.gene054713	MS.gene47340	0.805685	1.18E-49	-1.69E-46
MS.gene054775	MS.gene47340	0.800597	1.34E-48	-1.69E-46
MS.gene055356	MS.gene47340	0.802738	4.86E-49	-1.69E-46
MS.gene055358	MS.gene47340	0.806825	6.81E-50	-1.69E-46
MS.gene055465	MS.gene47340	0.820725	5.89E-53	-1.69E-46
MS.gene055466	MS.gene47340	0.852696	3.90E-61	-1.69E-46
MS.gene055468	MS.gene47340	0.843784	1.13E-58	-1.69E-46
MS.gene055512	MS.gene47340	0.818777	1.64E-52	-1.69E-46
MS.gene055608	MS.gene47340	0.853259	2.69E-61	-1.69E-46
MS.gene055818	MS.gene47340	0.83004	3.67E-55	-1.69E-46
MS.gene056069	MS.gene47340	-0.801683	8.02E-49	-1.69E-46
MS.gene056173	MS.gene47340	0.808203	3.48E-50	-1.69E-46
MS.gene056215	MS.gene47340	0.811493	6.81E-51	-1.69E-46
MS.gene056553	MS.gene47340	0.803062	4.17E-49	-1.69E-46
MS.gene056595	MS.gene47340	0.800804	1.21E-48	-1.69E-46
MS.gene056643	MS.gene47340	0.807113	5.92E-50	-1.69E-46
MS.gene056760	MS.gene47340	0.820987	5.13E-53	-1.69E-46
MS.gene057057	MS.gene47340	0.804353	2.25E-49	-1.69E-46
MS.gene057060	MS.gene47340	0.847661	1.00E-59	-1.69E-46
MS.gene057444	MS.gene47340	0.810512	1.11E-50	-1.69E-46
MS.gene057693	MS.gene47340	0.848154	7.34E-60	-1.69E-46
MS.gene058084	MS.gene47340	0.807735	4.37E-50	-1.69E-46
MS.gene058168	MS.gene47340	0.831861	1.31E-55	-1.69E-46
MS.gene058625	MS.gene47340	0.803601	3.22E-49	-1.69E-46
MS.gene058906	MS.gene47340	0.804242	2.37E-49	-1.69E-46
MS.gene059006	MS.gene47340	0.836119	1.13E-56	-1.69E-46
MS.gene059151	MS.gene47340	0.811444	6.98E-51	-1.69E-46
MS.gene05954	MS.gene47340	0.806413	8.33E-50	-1.69E-46
MS.gene059607	MS.gene47340	0.805738	1.15E-49	-1.69E-46
MS.gene059842	MS.gene47340	0.822187	2.71E-53	-1.69E-46
MS.gene059937	MS.gene47340	0.835318	1.80E-56	-1.69E-46
MS.gene060137	MS.gene47340	-0.813686	2.26E-51	-1.69E-46
MS.gene060322	MS.gene47340	0.820501	6.64E-53	-1.69E-46
MS.gene060429	MS.gene47340	0.840758	7.17E-58	-1.69E-46
MS.gene060587	MS.gene47340	0.810263	1.26E-50	-1.69E-46
MS.gene060802	MS.gene47340	0.809332	1.99E-50	-1.69E-46
MS.gene060803	MS.gene47340	0.86141	1.05E-63	-1.69E-46
MS.gene060907	MS.gene47340	0.802137	6.47E-49	-1.69E-46
MS.gene061176	MS.gene47340	0.810361	1.20E-50	-1.69E-46
MS.gene061177	MS.gene47340	0.810172	1.32E-50	-1.69E-46
MS.gene061178	MS.gene47340	0.810002	1.43E-50	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47340.t1	MTR_1g060990	99.052	211	2	0	1	211	301	511	5.53e-155	439
MS.gene47340.t1	MTR_1g098900	40.000	70	42	0	1	70	288	357	5.27e-12	64.7
MS.gene47340.t1	MTR_1g492790	36.000	75	47	1	1	74	311	385	6.99e-12	64.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47340.t1	AT3G10000	36.771	223	116	7	1	211	261	470	4.17e-30	115
MS.gene47340.t1	AT3G10000	36.771	223	116	7	1	211	271	480	4.93e-30	115
MS.gene47340.t1	AT5G03680	45.000	120	61	2	1	115	302	421	8.46e-25	101
MS.gene47340.t1	AT1G76880	42.857	70	40	0	1	70	262	331	8.63e-11	61.2

Find 0 sgRNAs with CRISPR-Local

Find 49 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATTCAAAATCAAAATGAAGA+TGG	+	6960:6213-6232	MS.gene47340:CDS	20.0%
!!	TTCAAAATCAAAATGAAGAT+GGG	+	6960:6214-6233	MS.gene47340:CDS	20.0%
!!	ATGATTCTAAAGAAGGAAAT+AGG	+	6960:6289-6308	MS.gene47340:CDS	25.0%
!!	TGGAAAAAGAACAAAAGTTT+TGG	+	6960:6055-6074	MS.gene47340:CDS	25.0%
	AAACTACAAAGGAATGATCA+TGG	+	6960:6414-6433	MS.gene47340:CDS	30.0%
	AATGTTGGAAATGTTGCTAA+TGG	+	6960:6456-6475	MS.gene47340:CDS	30.0%
	AGAAATGATTAAGGTTGAAG+AGG	+	6960:6149-6168	MS.gene47340:CDS	30.0%
	ATGAGATTGTGAAACTACAA+AGG	+	6960:6403-6422	MS.gene47340:CDS	30.0%
	TTCTGATAATTGTACTCCAA+GGG	+	6960:6266-6285	MS.gene47340:CDS	30.0%
	TTTCCAACATTAGAATCAGA+AGG	-	6960:6447-6466	MS.gene47340:intergenic	30.0%
	TTTCCTTTCATGATTAGTGA+GGG	+	6960:6489-6508	MS.gene47340:CDS	30.0%
!	AAGGGTGTAAATGTAATAAC+TGG	+	6960:6183-6202	MS.gene47340:CDS	30.0%
!!	ATGGAAGCTTTGAAGAATTT+AGG	+	6960:6120-6139	MS.gene47340:CDS	30.0%
	AGAAGGAAATAGGAAGAGAA+AGG	+	6960:6299-6318	MS.gene47340:CDS	35.0%
	AGGAGGTAGAGAAATGATTA+AGG	+	6960:6140-6159	MS.gene47340:CDS	35.0%
	ATCTTGAATAGTACTGTGAG+AGG	+	6960:6243-6262	MS.gene47340:CDS	35.0%
	CAATGCTCTATGTACAATCA+AGG	+	6960:6348-6367	MS.gene47340:CDS	35.0%
	CTTTCCTTTCATGATTAGTG+AGG	+	6960:6488-6507	MS.gene47340:CDS	35.0%
	GTTCTGATAATTGTACTCCA+AGG	+	6960:6265-6284	MS.gene47340:CDS	35.0%
	TCACCTTCTGATTCTAATGT+TGG	+	6960:6441-6460	MS.gene47340:CDS	35.0%
	TCTATGTACAATCAAGGAAG+TGG	+	6960:6354-6373	MS.gene47340:CDS	35.0%
!	GGAAATTTGTGGGAGAATTT+TGG	+	6960:6513-6532	MS.gene47340:CDS	35.0%
!	TTGTTCTTTTTCCACCCTTT+TGG	-	6960:6049-6068	MS.gene47340:intergenic	35.0%
!!	GAAGCTTTGAAGAATTTAGG+AGG	+	6960:6123-6142	MS.gene47340:CDS	35.0%
	GAAGAGGCTCATGATCATAA+GGG	+	6960:6165-6184	MS.gene47340:CDS	40.0%
	TAAGCTTGTGAAGACACTTG+AGG	+	6960:5972-5991	MS.gene47340:CDS	40.0%
	TAGTGAGGGTGGAAATTTGT+GGG	+	6960:6503-6522	MS.gene47340:CDS	40.0%
	TGAAGAGGCTCATGATCATA+AGG	+	6960:6164-6183	MS.gene47340:CDS	40.0%
	TTAGTGAGGGTGGAAATTTG+TGG	+	6960:6502-6521	MS.gene47340:CDS	40.0%
!	CCAAGGGATGATTCTAAAGA+AGG	+	6960:6282-6301	MS.gene47340:CDS	40.0%
!	TTTGGAGTAATGAGAGAGCA+TGG	+	6960:6073-6092	MS.gene47340:CDS	40.0%
!!	CCTTCTTTAGAATCATCCCT+TGG	-	6960:6285-6304	MS.gene47340:intergenic	40.0%
	AGAAGAGTGGAGGAAACAAG+AGG	+	6960:6023-6042	MS.gene47340:CDS	45.0%
	CCACCCTCACTAATCATGAA+AGG	-	6960:6495-6514	MS.gene47340:intergenic	45.0%
	CCTTTCATGATTAGTGAGGG+TGG	+	6960:6492-6511	MS.gene47340:CDS	45.0%
	CGTTAAGAGAAGAAGAGTGG+AGG	+	6960:6013-6032	MS.gene47340:CDS	45.0%
	GACACTTGAGGACAAGGAAA+AGG	+	6960:5984-6003	MS.gene47340:CDS	45.0%
	GAGGAAACAAGAGGCCAAAA+GGG	+	6960:6032-6051	MS.gene47340:CDS	45.0%
	TGAGGACAAGGAAAAGGAGA+GGG	+	6960:5990-6009	MS.gene47340:CDS	45.0%
	TGTGAAGACACTTGAGGACA+AGG	+	6960:5978-5997	MS.gene47340:CDS	45.0%
	TTGAGGACAAGGAAAAGGAG+AGG	+	6960:5989-6008	MS.gene47340:CDS	45.0%
!	AGAGAGCATGGATTGAAGCA+AGG	+	6960:6085-6104	MS.gene47340:CDS	45.0%
!	GAGAGCATGGATTGAAGCAA+GGG	+	6960:6086-6105	MS.gene47340:CDS	45.0%
!!	AGCAAGGGATGCTGCTTTAA+TGG	+	6960:6101-6120	MS.gene47340:CDS	45.0%
	GAAACAAGAGGCCAAAAGGG+TGG	+	6960:6035-6054	MS.gene47340:CDS	50.0%
	GAAGCTTGTGGAGAAGCAAG+AGG	+	6960:5939-5958	MS.gene47340:CDS	50.0%
	GGAGGAAACAAGAGGCCAAA+AGG	+	6960:6031-6050	MS.gene47340:CDS	50.0%
	GGGCGTTAAGAGAAGAAGAG+TGG	+	6960:6010-6029	MS.gene47340:CDS	50.0%
	TTGTGGAGAAGCAAGAGGAG+TGG	+	6960:5944-5963	MS.gene47340:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
6960	gene	5934	6569	5934	ID=MS.gene47340
6960	mRNA	5934	6569	5934	ID=MS.gene47340.t1;Parent=MS.gene47340
6960	exon	5934	6569	5934	ID=MS.gene47340.t1.exon1;Parent=MS.gene47340.t1
6960	CDS	5934	6569	5934	ID=cds.MS.gene47340.t1;Parent=MS.gene47340.t1

Gene Sequence

>MS.gene47340

ATGAAGAAGCTTGTGGAGAAGCAAGAGGAGTGGTTGAGTAAGCTTGTGAAGACACTTGAGGACAAGGAAAAGGAGAGGGCGTTAAGAGAAGAAGAGTGGAGGAAACAAGAGGCCAAAAGGGTGGAAAAAGAACAAAAGTTTTGGAGTAATGAGAGAGCATGGATTGAAGCAAGGGATGCTGCTTTAATGGAAGCTTTGAAGAATTTAGGAGGTAGAGAAATGATTAAGGTTGAAGAGGCTCATGATCATAAGGGTGTAAATGTAATAACTGGAGCAGAGATTCAAAATCAAAATGAAGATGGGAGTGAAATCTTGAATAGTACTGTGAGAGGTTCTGATAATTGTACTCCAAGGGATGATTCTAAAGAAGGAAATAGGAAGAGAAAGGAGAGTTTTTACTTCAACAATAATGAACAATGCTCTATGTACAATCAAGGAAGTGGTTATTGTGATGTTAATGATCAAAGAGATGAGATTGTGAAACTACAAAGGAATGATCATGGTTCTTCACCTTCTGATTCTAATGTTGGAAATGTTGCTAATGGTGATACTTGCTTTCCTTTCATGATTAGTGAGGGTGGAAATTTGTGGGAGAATTTTGGCTTGAAGATCAATAAAGTAAACCAAAACCATTAA

Protein sequence

>MS.gene47340.t1

MKKLVEKQEEWLSKLVKTLEDKEKERALREEEWRKQEAKRVEKEQKFWSNERAWIEARDAALMEALKNLGGREMIKVEEAHDHKGVNVITGAEIQNQNEDGSEILNSTVRGSDNCTPRDDSKEGNRKRKESFYFNNNEQCSMYNQGSGYCDVNDQRDEIVKLQRNDHGSSPSDSNVGNVANGDTCFPFMISEGGNLWENFGLKINKVNQNH