Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49613.t1 | XP_003613543.1 | 92.5 | 280 | 21 | 0 | 1 | 280 | 1 | 280 | 4.60E-148 | 533.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49613.t1 | Q9UDY4 | 33.9 | 342 | 143 | 6 | 5 | 274 | 4 | 334 | 2.1e-48 | 194.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49613.t1 | G7K8E9 | 92.5 | 280 | 21 | 0 | 1 | 280 | 1 | 280 | 3.3e-148 | 533.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene49613 | 0.841455 | 4.70E-58 | -1.69E-46 |
| MS.gene049254 | MS.gene49613 | 0.868576 | 5.89E-66 | -1.69E-46 |
| MS.gene049283 | MS.gene49613 | 0.802776 | 4.78E-49 | -1.69E-46 |
| MS.gene049350 | MS.gene49613 | 0.817207 | 3.72E-52 | -1.69E-46 |
| MS.gene049368 | MS.gene49613 | 0.814994 | 1.16E-51 | -1.69E-46 |
| MS.gene049419 | MS.gene49613 | -0.810273 | 1.25E-50 | -1.69E-46 |
| MS.gene049499 | MS.gene49613 | 0.834316 | 3.22E-56 | -1.69E-46 |
| MS.gene049711 | MS.gene49613 | 0.823173 | 1.60E-53 | -1.69E-46 |
| MS.gene049983 | MS.gene49613 | 0.827818 | 1.27E-54 | -1.69E-46 |
| MS.gene050559 | MS.gene49613 | 0.816937 | 4.27E-52 | -1.69E-46 |
| MS.gene050561 | MS.gene49613 | 0.810157 | 1.33E-50 | -1.69E-46 |
| MS.gene050562 | MS.gene49613 | 0.807871 | 4.09E-50 | -1.69E-46 |
| MS.gene051201 | MS.gene49613 | 0.817802 | 2.73E-52 | -1.69E-46 |
| MS.gene051279 | MS.gene49613 | 0.816305 | 5.92E-52 | -1.69E-46 |
| MS.gene051332 | MS.gene49613 | 0.858347 | 8.77E-63 | -1.69E-46 |
| MS.gene051363 | MS.gene49613 | 0.809082 | 2.26E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene49613 | 0.832434 | 9.47E-56 | -1.69E-46 |
| MS.gene051832 | MS.gene49613 | 0.808042 | 3.76E-50 | -1.69E-46 |
| MS.gene052463 | MS.gene49613 | 0.837968 | 3.80E-57 | -1.69E-46 |
| MS.gene052493 | MS.gene49613 | 0.811644 | 6.31E-51 | -1.69E-46 |
| MS.gene052516 | MS.gene49613 | 0.812507 | 4.10E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene49613 | 0.826455 | 2.69E-54 | -1.69E-46 |
| MS.gene052533 | MS.gene49613 | 0.809262 | 2.06E-50 | -1.69E-46 |
| MS.gene052534 | MS.gene49613 | 0.848574 | 5.62E-60 | -1.69E-46 |
| MS.gene052582 | MS.gene49613 | 0.833635 | 4.76E-56 | -1.69E-46 |
| MS.gene052584 | MS.gene49613 | 0.832422 | 9.54E-56 | -1.69E-46 |
| MS.gene052586 | MS.gene49613 | 0.810703 | 1.01E-50 | -1.69E-46 |
| MS.gene052773 | MS.gene49613 | 0.842305 | 2.80E-58 | -1.69E-46 |
| MS.gene052855 | MS.gene49613 | 0.800561 | 1.36E-48 | -1.69E-46 |
| MS.gene053006 | MS.gene49613 | 0.81275 | 3.62E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene49613 | 0.829501 | 4.97E-55 | -1.69E-46 |
| MS.gene053272 | MS.gene49613 | -0.807356 | 5.26E-50 | -1.69E-46 |
| MS.gene053298 | MS.gene49613 | 0.80226 | 6.10E-49 | -1.69E-46 |
| MS.gene053931 | MS.gene49613 | 0.801069 | 1.07E-48 | -1.69E-46 |
| MS.gene05423 | MS.gene49613 | 0.827843 | 1.25E-54 | -1.69E-46 |
| MS.gene054479 | MS.gene49613 | 0.803818 | 2.91E-49 | -1.69E-46 |
| MS.gene054576 | MS.gene49613 | 0.832871 | 7.38E-56 | -1.69E-46 |
| MS.gene05458 | MS.gene49613 | 0.83948 | 1.55E-57 | -1.69E-46 |
| MS.gene054651 | MS.gene49613 | 0.826057 | 3.34E-54 | -1.69E-46 |
| MS.gene054775 | MS.gene49613 | 0.823366 | 1.44E-53 | -1.69E-46 |
| MS.gene054892 | MS.gene49613 | 0.813726 | 2.21E-51 | -1.69E-46 |
| MS.gene054893 | MS.gene49613 | 0.810944 | 8.96E-51 | -1.69E-46 |
| MS.gene054991 | MS.gene49613 | 0.825286 | 5.09E-54 | -1.69E-46 |
| MS.gene055228 | MS.gene49613 | 0.804293 | 2.32E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene49613 | 0.816337 | 5.83E-52 | -1.69E-46 |
| MS.gene055586 | MS.gene49613 | 0.819778 | 9.72E-53 | -1.69E-46 |
| MS.gene055724 | MS.gene49613 | 0.812837 | 3.47E-51 | -1.69E-46 |
| MS.gene055818 | MS.gene49613 | 0.813568 | 2.40E-51 | -1.69E-46 |
| MS.gene055841 | MS.gene49613 | 0.813082 | 3.06E-51 | -1.69E-46 |
| MS.gene055926 | MS.gene49613 | 0.813456 | 2.54E-51 | -1.69E-46 |
| MS.gene056050 | MS.gene49613 | 0.80506 | 1.60E-49 | -1.69E-46 |
| MS.gene056162 | MS.gene49613 | 0.802154 | 6.42E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene49613 | 0.810949 | 8.94E-51 | -1.69E-46 |
| MS.gene056595 | MS.gene49613 | 0.813417 | 2.59E-51 | -1.69E-46 |
| MS.gene056699 | MS.gene49613 | 0.829825 | 4.14E-55 | -1.69E-46 |
| MS.gene056776 | MS.gene49613 | 0.831793 | 1.36E-55 | -1.69E-46 |
| MS.gene05686 | MS.gene49613 | 0.835992 | 1.22E-56 | -1.69E-46 |
| MS.gene05690 | MS.gene49613 | 0.81745 | 3.28E-52 | -1.69E-46 |
| MS.gene056973 | MS.gene49613 | 0.801812 | 7.55E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene49613 | 0.827168 | 1.82E-54 | -1.69E-46 |
| MS.gene057034 | MS.gene49613 | 0.82214 | 2.78E-53 | -1.69E-46 |
| MS.gene057102 | MS.gene49613 | 0.840901 | 6.58E-58 | -1.69E-46 |
| MS.gene057208 | MS.gene49613 | 0.872995 | 2.07E-67 | -1.69E-46 |
| MS.gene057598 | MS.gene49613 | 0.814229 | 1.71E-51 | -1.69E-46 |
| MS.gene057611 | MS.gene49613 | 0.875328 | 3.36E-68 | -1.69E-46 |
| MS.gene057915 | MS.gene49613 | 0.801736 | 7.82E-49 | -1.69E-46 |
| MS.gene058081 | MS.gene49613 | 0.812171 | 4.85E-51 | -1.69E-46 |
| MS.gene058355 | MS.gene49613 | 0.812157 | 4.88E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene49613 | 0.817043 | 4.05E-52 | -1.69E-46 |
| MS.gene058781 | MS.gene49613 | 0.800986 | 1.11E-48 | -1.69E-46 |
| MS.gene058979 | MS.gene49613 | 0.824447 | 8.03E-54 | -1.69E-46 |
| MS.gene05897 | MS.gene49613 | 0.838727 | 2.42E-57 | -1.69E-46 |
| MS.gene059438 | MS.gene49613 | 0.823339 | 1.46E-53 | -1.69E-46 |
| MS.gene059439 | MS.gene49613 | 0.815692 | 8.12E-52 | -1.69E-46 |
| MS.gene059440 | MS.gene49613 | 0.810374 | 1.19E-50 | -1.69E-46 |
| MS.gene059625 | MS.gene49613 | 0.82672 | 2.32E-54 | -1.69E-46 |
| MS.gene05985 | MS.gene49613 | -0.829747 | 4.33E-55 | -1.69E-46 |
| MS.gene059952 | MS.gene49613 | 0.81931 | 1.24E-52 | -1.69E-46 |
| MS.gene059965 | MS.gene49613 | 0.809094 | 2.24E-50 | -1.69E-46 |
| MS.gene060244 | MS.gene49613 | 0.807866 | 4.10E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene49613 | 0.810288 | 1.24E-50 | -1.69E-46 |
| MS.gene060365 | MS.gene49613 | 0.827222 | 1.76E-54 | -1.69E-46 |
| MS.gene060373 | MS.gene49613 | 0.811967 | 5.37E-51 | -1.69E-46 |
| MS.gene060435 | MS.gene49613 | 0.802629 | 5.12E-49 | -1.69E-46 |
| MS.gene060521 | MS.gene49613 | 0.804935 | 1.70E-49 | -1.69E-46 |
| MS.gene060527 | MS.gene49613 | 0.808378 | 3.19E-50 | -1.69E-46 |
| MS.gene06052 | MS.gene49613 | 0.832457 | 9.35E-56 | -1.69E-46 |
| MS.gene060777 | MS.gene49613 | 0.809863 | 1.53E-50 | -1.69E-46 |
| MS.gene060879 | MS.gene49613 | 0.812261 | 4.63E-51 | -1.69E-46 |
| MS.gene060932 | MS.gene49613 | 0.804775 | 1.84E-49 | -1.69E-46 |
| MS.gene060935 | MS.gene49613 | 0.837587 | 4.76E-57 | -1.69E-46 |
| MS.gene060937 | MS.gene49613 | 0.842053 | 3.27E-58 | -1.69E-46 |
| MS.gene061188 | MS.gene49613 | 0.855353 | 6.68E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49613.t1 | MTR_5g037880 | 92.500 | 280 | 21 | 0 | 1 | 280 | 1 | 280 | 0.0 | 536 |
| MS.gene49613.t1 | MTR_4g015840 | 56.250 | 176 | 77 | 0 | 101 | 276 | 88 | 263 | 2.80e-69 | 215 |
| MS.gene49613.t1 | MTR_4g015840 | 56.571 | 175 | 76 | 0 | 101 | 275 | 165 | 339 | 1.83e-68 | 216 |
| MS.gene49613.t1 | MTR_4g015840 | 53.333 | 75 | 28 | 1 | 5 | 79 | 4 | 71 | 1.44e-18 | 84.3 |
| MS.gene49613.t1 | MTR_2g090705 | 56.322 | 174 | 76 | 0 | 101 | 274 | 161 | 334 | 7.53e-68 | 214 |
| MS.gene49613.t1 | MTR_2g090705 | 54.667 | 75 | 27 | 1 | 5 | 79 | 4 | 71 | 8.13e-18 | 82.4 |
| MS.gene49613.t1 | MTR_2g014470 | 54.237 | 177 | 81 | 0 | 98 | 274 | 162 | 338 | 1.35e-66 | 211 |
| MS.gene49613.t1 | MTR_2g014470 | 58.667 | 75 | 24 | 1 | 5 | 79 | 4 | 71 | 2.74e-20 | 89.4 |
| MS.gene49613.t1 | MTR_4g078850 | 53.073 | 179 | 84 | 0 | 100 | 278 | 169 | 347 | 8.14e-66 | 209 |
| MS.gene49613.t1 | MTR_4g078850 | 52.000 | 75 | 29 | 1 | 5 | 79 | 4 | 71 | 6.56e-18 | 82.8 |
| MS.gene49613.t1 | MTR_3g108020 | 54.023 | 174 | 80 | 0 | 101 | 274 | 152 | 325 | 6.57e-62 | 198 |
| MS.gene49613.t1 | MTR_3g108020 | 54.667 | 75 | 27 | 1 | 5 | 79 | 4 | 71 | 6.65e-19 | 85.1 |
| MS.gene49613.t1 | MTR_2g014480 | 53.086 | 162 | 73 | 1 | 101 | 259 | 169 | 330 | 1.10e-55 | 183 |
| MS.gene49613.t1 | MTR_2g014480 | 51.190 | 84 | 32 | 2 | 5 | 88 | 4 | 78 | 4.87e-18 | 83.2 |
| MS.gene49613.t1 | MTR_3g088140 | 46.927 | 179 | 94 | 1 | 101 | 278 | 179 | 357 | 2.11e-53 | 177 |
| MS.gene49613.t1 | MTR_3g437840 | 50.355 | 141 | 70 | 0 | 135 | 275 | 22 | 162 | 1.91e-48 | 158 |
| MS.gene49613.t1 | MTR_2g006890 | 42.697 | 178 | 101 | 1 | 100 | 276 | 200 | 377 | 6.70e-43 | 150 |
| MS.gene49613.t1 | MTR_3g437360 | 48.667 | 150 | 74 | 2 | 105 | 252 | 183 | 331 | 6.73e-38 | 136 |
| MS.gene49613.t1 | MTR_8g006430 | 27.824 | 363 | 159 | 10 | 3 | 274 | 12 | 362 | 6.50e-32 | 122 |
| MS.gene49613.t1 | MTR_7g109340 | 30.395 | 329 | 157 | 9 | 6 | 274 | 27 | 343 | 3.70e-31 | 119 |
| MS.gene49613.t1 | MTR_2g087660 | 37.589 | 141 | 86 | 1 | 136 | 274 | 218 | 358 | 2.38e-28 | 112 |
| MS.gene49613.t1 | MTR_4g050420 | 35.461 | 141 | 89 | 1 | 136 | 274 | 216 | 356 | 1.96e-26 | 107 |
| MS.gene49613.t1 | MTR_2g087660 | 36.842 | 95 | 58 | 1 | 136 | 228 | 218 | 312 | 8.81e-18 | 82.0 |
| MS.gene49613.t1 | MTR_7g112360 | 39.535 | 86 | 48 | 1 | 6 | 91 | 17 | 98 | 1.90e-14 | 68.6 |
| MS.gene49613.t1 | MTR_7g112360 | 44.286 | 70 | 35 | 1 | 6 | 75 | 17 | 82 | 2.37e-14 | 69.7 |
| MS.gene49613.t1 | MTR_3g437850 | 31.977 | 172 | 66 | 4 | 5 | 131 | 2 | 167 | 7.49e-14 | 68.2 |
| MS.gene49613.t1 | MTR_5g065160 | 20.597 | 335 | 193 | 9 | 5 | 267 | 83 | 416 | 4.12e-13 | 69.3 |
| MS.gene49613.t1 | MTR_5g065160 | 20.597 | 335 | 193 | 9 | 5 | 267 | 82 | 415 | 4.34e-13 | 69.3 |
| MS.gene49613.t1 | MTR_5g065160 | 20.597 | 335 | 193 | 9 | 5 | 267 | 76 | 409 | 5.24e-13 | 68.9 |
| MS.gene49613.t1 | MTR_5g065160 | 20.597 | 335 | 193 | 9 | 5 | 267 | 83 | 416 | 6.15e-13 | 68.9 |
| MS.gene49613.t1 | MTR_7g101070 | 41.667 | 72 | 35 | 1 | 5 | 76 | 358 | 422 | 5.39e-12 | 65.9 |
| MS.gene49613.t1 | MTR_4g085070 | 38.095 | 105 | 56 | 3 | 12 | 112 | 19 | 118 | 6.35e-12 | 62.8 |
| MS.gene49613.t1 | MTR_3g092680 | 52.000 | 50 | 24 | 0 | 227 | 276 | 12 | 61 | 1.07e-11 | 59.7 |
| MS.gene49613.t1 | MTR_2g104030 | 40.000 | 90 | 45 | 2 | 3 | 92 | 68 | 148 | 2.01e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49613.t1 | AT3G08910 | 44.308 | 325 | 120 | 3 | 5 | 275 | 4 | 321 | 1.55e-90 | 271 |
| MS.gene49613.t1 | AT1G59725 | 43.675 | 332 | 118 | 5 | 5 | 274 | 4 | 328 | 3.30e-79 | 243 |
| MS.gene49613.t1 | AT5G01390 | 43.816 | 283 | 137 | 3 | 5 | 275 | 4 | 276 | 1.36e-78 | 239 |
| MS.gene49613.t1 | AT4G28480 | 42.517 | 294 | 137 | 6 | 5 | 274 | 4 | 289 | 6.12e-76 | 233 |
| MS.gene49613.t1 | AT5G01390 | 38.462 | 338 | 134 | 4 | 5 | 275 | 4 | 334 | 9.20e-75 | 232 |
| MS.gene49613.t1 | AT1G10350 | 58.857 | 175 | 71 | 1 | 100 | 274 | 173 | 346 | 3.35e-72 | 226 |
| MS.gene49613.t1 | AT1G10350 | 57.333 | 75 | 25 | 1 | 5 | 79 | 4 | 71 | 1.67e-20 | 90.1 |
| MS.gene49613.t1 | AT3G47940 | 51.256 | 199 | 94 | 1 | 76 | 274 | 151 | 346 | 2.16e-68 | 216 |
| MS.gene49613.t1 | AT3G47940 | 59.211 | 76 | 23 | 2 | 5 | 79 | 4 | 72 | 1.08e-18 | 85.1 |
| MS.gene49613.t1 | AT2G20560 | 56.322 | 174 | 76 | 0 | 101 | 274 | 163 | 336 | 3.01e-68 | 215 |
| MS.gene49613.t1 | AT2G20560 | 54.667 | 75 | 27 | 1 | 5 | 79 | 4 | 71 | 5.01e-19 | 85.9 |
| MS.gene49613.t1 | AT4G28480 | 52.542 | 177 | 84 | 0 | 98 | 274 | 171 | 347 | 8.71e-65 | 206 |
| MS.gene49613.t1 | AT4G28480 | 54.667 | 75 | 27 | 1 | 5 | 79 | 4 | 71 | 5.80e-19 | 85.9 |
| MS.gene49613.t1 | AT2G20550 | 51.724 | 174 | 84 | 0 | 101 | 274 | 110 | 283 | 1.79e-64 | 204 |
| MS.gene49613.t1 | AT2G20550 | 51.724 | 174 | 84 | 0 | 101 | 274 | 110 | 283 | 1.79e-64 | 204 |
| MS.gene49613.t1 | AT5G25530 | 51.724 | 174 | 84 | 0 | 101 | 274 | 172 | 345 | 1.46e-60 | 196 |
| MS.gene49613.t1 | AT5G25530 | 54.217 | 83 | 23 | 2 | 5 | 79 | 4 | 79 | 3.86e-18 | 83.6 |
| MS.gene49613.t1 | AT5G25530 | 51.724 | 174 | 84 | 0 | 101 | 274 | 164 | 337 | 1.77e-60 | 195 |
| MS.gene49613.t1 | AT5G25530 | 60.000 | 75 | 23 | 1 | 5 | 79 | 4 | 71 | 9.78e-21 | 90.5 |
| MS.gene49613.t1 | AT5G01390 | 35.336 | 283 | 122 | 4 | 5 | 275 | 4 | 237 | 3.65e-52 | 171 |
| MS.gene49613.t1 | AT1G44160 | 44.944 | 178 | 98 | 0 | 101 | 278 | 180 | 357 | 4.36e-48 | 164 |
| MS.gene49613.t1 | AT1G11040 | 42.938 | 177 | 101 | 0 | 100 | 276 | 258 | 434 | 4.76e-45 | 157 |
| MS.gene49613.t1 | AT3G62600 | 30.631 | 333 | 163 | 10 | 1 | 274 | 22 | 345 | 1.06e-32 | 123 |
| MS.gene49613.t1 | AT3G44110 | 31.500 | 200 | 128 | 5 | 86 | 278 | 165 | 362 | 1.72e-26 | 107 |
| MS.gene49613.t1 | AT5G22060 | 34.899 | 149 | 95 | 1 | 132 | 278 | 215 | 363 | 5.38e-26 | 106 |
| MS.gene49613.t1 | AT3G44110 | 36.036 | 111 | 69 | 1 | 136 | 244 | 218 | 328 | 7.90e-20 | 88.2 |
| MS.gene49613.t1 | AT5G01390 | 51.899 | 79 | 31 | 1 | 5 | 83 | 4 | 75 | 8.94e-19 | 83.6 |
| MS.gene49613.t1 | AT1G56300 | 42.857 | 70 | 36 | 1 | 6 | 75 | 14 | 79 | 6.10e-14 | 67.4 |
| MS.gene49613.t1 | AT1G56300 | 42.857 | 70 | 36 | 1 | 6 | 75 | 14 | 79 | 8.72e-14 | 67.8 |
| MS.gene49613.t1 | AT3G17830 | 48.000 | 75 | 30 | 2 | 5 | 79 | 63 | 128 | 1.57e-12 | 67.8 |
| MS.gene49613.t1 | AT2G22360 | 29.457 | 129 | 89 | 2 | 140 | 267 | 295 | 422 | 4.76e-12 | 66.2 |
| MS.gene49613.t1 | AT4G39960 | 27.737 | 137 | 97 | 2 | 140 | 275 | 301 | 436 | 6.64e-12 | 65.9 |
| MS.gene49613.t1 | AT4G39960 | 27.737 | 137 | 97 | 2 | 140 | 275 | 301 | 436 | 6.64e-12 | 65.9 |
| MS.gene49613.t1 | AT4G10130 | 41.667 | 72 | 37 | 1 | 6 | 77 | 12 | 78 | 1.60e-11 | 62.0 |
| MS.gene49613.t1 | AT4G10130 | 41.667 | 72 | 37 | 1 | 6 | 77 | 12 | 78 | 1.60e-11 | 62.0 |
| MS.gene49613.t1 | AT4G10130 | 41.667 | 72 | 37 | 1 | 6 | 77 | 12 | 78 | 1.60e-11 | 62.0 |
| MS.gene49613.t1 | AT4G10130 | 41.667 | 72 | 37 | 1 | 6 | 77 | 12 | 78 | 1.60e-11 | 62.0 |
| MS.gene49613.t1 | AT4G10130 | 41.667 | 72 | 37 | 1 | 6 | 77 | 12 | 78 | 1.60e-11 | 62.0 |
| MS.gene49613.t1 | AT5G16650 | 44.304 | 79 | 36 | 2 | 5 | 83 | 11 | 81 | 9.49e-11 | 59.7 |
Find 63 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGTATTGGTTAATCTTATC+TGG | 0.179052 | 5.1:-28557316 | None:intergenic |
| ATGAATTATTCAAATCTTCT+AGG | 0.190799 | 5.1:-28557267 | None:intergenic |
| TAGCCTTGAGGAGCTTTATA+AGG | 0.272865 | 5.1:+28557537 | MS.gene49613:CDS |
| TAGACATATCACAGTTAAAT+TGG | 0.291245 | 5.1:+28559328 | MS.gene49613:CDS |
| TGGTCAATATCCTGTGAATA+TGG | 0.295457 | 5.1:+28557447 | MS.gene49613:CDS |
| TTTCCGTCCCTCTTGAATAT+AGG | 0.310061 | 5.1:-28559227 | None:intergenic |
| GACCGAAAAGATATCACTTC+TGG | 0.329613 | 5.1:+28559262 | MS.gene49613:CDS |
| AAATGGTTGTGGGAGTAATA+TGG | 0.342232 | 5.1:+28557471 | MS.gene49613:CDS |
| TCAAACTCTTGTTTCCTTGA+AGG | 0.344256 | 5.1:-28557349 | None:intergenic |
| TATCCTGTGAATATGGAAAA+TGG | 0.352540 | 5.1:+28557454 | MS.gene49613:CDS |
| CTAAGATTTCCTCTCTTGCT+TGG | 0.359101 | 5.1:-28559416 | None:intergenic |
| AAGGGTTCCTTGAAGGGTAT+TGG | 0.378802 | 5.1:-28557330 | None:intergenic |
| GGGAAAGGAAACTATCTTCC+AGG | 0.383769 | 5.1:+28559158 | MS.gene49613:CDS |
| TTCCTTGAAGGGTTCCTTGA+AGG | 0.386957 | 5.1:-28557337 | None:intergenic |
| AGGAATGTTCCTGATGAGTT+TGG | 0.388661 | 5.1:+28557586 | MS.gene49613:CDS |
| CAAACTCTTGTTTCCTTGAA+GGG | 0.397467 | 5.1:-28557348 | None:intergenic |
| TGGAGTTGTTGAGAGTGATT+TGG | 0.415245 | 5.1:+28557510 | MS.gene49613:CDS |
| GGAAACTATCTTCCAGGATC+TGG | 0.417025 | 5.1:+28559164 | MS.gene49613:CDS |
| ATAACAATTTAGTTATGAAA+TGG | 0.419493 | 5.1:+28557290 | MS.gene49613:CDS |
| ACCCTTCAAGGAACCCTTCA+AGG | 0.422943 | 5.1:+28557335 | MS.gene49613:CDS |
| GGAATGTTCCTGATGAGTTT+GGG | 0.422963 | 5.1:+28557587 | MS.gene49613:CDS |
| TCACTTCTGGAAGCTCTTGT+TGG | 0.439755 | 5.1:+28559275 | MS.gene49613:CDS |
| TGAATTATTCAAATCTTCTA+GGG | 0.449404 | 5.1:-28557266 | None:intergenic |
| ACATCAGATGGTCCAGATCC+TGG | 0.451615 | 5.1:-28559176 | None:intergenic |
| AGCCTTGAGGAGCTTTATAA+GGG | 0.452797 | 5.1:+28557538 | MS.gene49613:CDS |
| TCCTTGAAGGGTTCCTTGAA+GGG | 0.457964 | 5.1:-28557336 | None:intergenic |
| GGAAGATAGTTTCCTTTCCC+AGG | 0.472749 | 5.1:-28559155 | None:intergenic |
| GTGGATTACCCAAACTCATC+AGG | 0.474906 | 5.1:-28557595 | None:intergenic |
| AAAGGAAGGTGAAAGTTGTA+AGG | 0.495090 | 5.1:+28557566 | MS.gene49613:CDS |
| GTGAATATGGAAAATGGTTG+TGG | 0.498589 | 5.1:+28557460 | MS.gene49613:CDS |
| TTGCTTGGATCCTTTGAAAG+TGG | 0.501531 | 5.1:-28559401 | None:intergenic |
| AGATTAACCAATACCCTTCA+AGG | 0.505955 | 5.1:+28557323 | MS.gene49613:CDS |
| CTCAACATCACAACCTTGGA+TGG | 0.509868 | 5.1:+28559305 | MS.gene49613:CDS |
| GAAAAGGTCGTCGCTGATGA+AGG | 0.511756 | 5.1:+28559374 | MS.gene49613:CDS |
| TATTCAACCTGGTTGGAAGA+AGG | 0.512246 | 5.1:+28559115 | MS.gene49613:CDS |
| GGTATTGGTTAATCTTATCT+GGG | 0.512734 | 5.1:-28557315 | None:intergenic |
| TTATAGGTTTAGTAATCAGC+AGG | 0.520440 | 5.1:-28559515 | None:intergenic |
| TTCAAGGAAACAAGAGTTTG+AGG | 0.523578 | 5.1:+28557351 | MS.gene49613:CDS |
| TGAAGGTATGCCACTTTCAA+AGG | 0.534883 | 5.1:+28559391 | MS.gene49613:CDS |
| GACTCTCAACATCACAACCT+TGG | 0.539538 | 5.1:+28559301 | MS.gene49613:CDS |
| TGTGACACCGGGATATGAAA+AGG | 0.540202 | 5.1:+28559358 | MS.gene49613:CDS |
| ATTCAACCTGGTTGGAAGAA+GGG | 0.550194 | 5.1:+28559116 | MS.gene49613:CDS |
| TTTGTACCCTTCTTCCAACC+AGG | 0.551829 | 5.1:-28559122 | None:intergenic |
| TGTTGTGAGGTCAAACTTGG+TGG | 0.554178 | 5.1:-28559461 | None:intergenic |
| TTATAAGGGTTGCAAAAGGA+AGG | 0.556592 | 5.1:+28557552 | MS.gene49613:CDS |
| CGATTACTACAAAACACTAA+AGG | 0.559196 | 5.1:+28557228 | MS.gene49613:CDS |
| TCCCTCTTGAATATAGGATG+TGG | 0.559598 | 5.1:-28559221 | None:intergenic |
| AGCTTTATAAGGGTTGCAAA+AGG | 0.560966 | 5.1:+28557548 | MS.gene49613:CDS |
| AGATACATATTCAACCTGGT+TGG | 0.563118 | 5.1:+28559108 | MS.gene49613:CDS |
| ATTGGATGATATTGTGACAC+CGG | 0.564217 | 5.1:+28559346 | MS.gene49613:CDS |
| TGAATATGGAAAATGGTTGT+GGG | 0.574508 | 5.1:+28557461 | MS.gene49613:CDS |
| TGTGATATGTCTACCATCCA+AGG | 0.580757 | 5.1:-28559318 | None:intergenic |
| ATGGAGGTTGATGAAAGTGT+TGG | 0.594938 | 5.1:+28557490 | MS.gene49613:CDS |
| GACCACATCCTATATTCAAG+AGG | 0.624354 | 5.1:+28559219 | MS.gene49613:CDS |
| TCAAAGGATCCAAGCAAGAG+AGG | 0.627088 | 5.1:+28559407 | MS.gene49613:CDS |
| TTGGATGATATTGTGACACC+GGG | 0.630525 | 5.1:+28559347 | MS.gene49613:CDS |
| CGTCAGATCTATGATCGCAA+TGG | 0.635178 | 5.1:+28557427 | MS.gene49613:CDS |
| AACCCTTATAAAGCTCCTCA+AGG | 0.648125 | 5.1:-28557540 | None:intergenic |
| TTGAAGATACATATTCAACC+TGG | 0.655040 | 5.1:+28559104 | MS.gene49613:CDS |
| TGATTTGGTATGTAGCCTTG+AGG | 0.655134 | 5.1:+28557525 | MS.gene49613:CDS |
| CATCCTATATTCAAGAGGGA+CGG | 0.657831 | 5.1:+28559224 | MS.gene49613:CDS |
| ACCACATCCTATATTCAAGA+GGG | 0.666261 | 5.1:+28559220 | MS.gene49613:CDS |
| TGGTTGTGGGAGTAATATGG+AGG | 0.693933 | 5.1:+28557474 | MS.gene49613:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAACAAATTAATTAGAT+TGG | - | chr5.1:28557696-28557715 | None:intergenic | 10.0% |
| !!! | AATCTAATTAATTTGTTATT+AGG | + | chr5.1:28557695-28557714 | MS.gene49613:intron | 10.0% |
| !!! | ATCTAATTAATTTGTTATTA+GGG | + | chr5.1:28557696-28557715 | MS.gene49613:intron | 10.0% |
| !! | AACACAAAAAACAAAAATTA+AGG | - | chr5.1:28557626-28557645 | None:intergenic | 15.0% |
| !! | ATAACAATTTAGTTATGAAA+TGG | + | chr5.1:28557290-28557309 | MS.gene49613:CDS | 15.0% |
| !! | GATTATATGTATAAGAAAAT+TGG | + | chr5.1:28557945-28557964 | MS.gene49613:intron | 15.0% |
| !!! | ATTTCAATTGTAAACTTTTT+TGG | + | chr5.1:28558619-28558638 | MS.gene49613:intron | 15.0% |
| !!! | CTTATTTTACATATGAATTT+TGG | + | chr5.1:28558458-28558477 | MS.gene49613:intron | 15.0% |
| !!! | TTATGCAATTTTATTTCAAT+TGG | - | chr5.1:28558949-28558968 | None:intergenic | 15.0% |
| !! | AACAAAAATATGATGTAAGA+AGG | + | chr5.1:28559480-28559499 | MS.gene49613:CDS | 20.0% |
| !! | ATGAATTATTCAAATCTTCT+AGG | - | chr5.1:28557270-28557289 | None:intergenic | 20.0% |
| !! | TATCTGTATTATGTATAATC+TGG | + | chr5.1:28558662-28558681 | MS.gene49613:intron | 20.0% |
| !! | TGAATTATTCAAATCTTCTA+GGG | - | chr5.1:28557269-28557288 | None:intergenic | 20.0% |
| !! | TTGATACTTAACACTTAATT+GGG | + | chr5.1:28558315-28558334 | MS.gene49613:intron | 20.0% |
| !! | TTTGATACTTAACACTTAAT+TGG | + | chr5.1:28558314-28558333 | MS.gene49613:intron | 20.0% |
| !!! | AAATTTTAAGAGAATTTCTG+AGG | + | chr5.1:28557375-28557394 | MS.gene49613:CDS | 20.0% |
| !!! | GAAAGTTTTCTTTTCTAAAT+TGG | + | chr5.1:28559048-28559067 | MS.gene49613:intron | 20.0% |
| !!! | TTTTACATATGAATTTTGGA+TGG | + | chr5.1:28558462-28558481 | MS.gene49613:intron | 20.0% |
| !!! | TTTTTACTAGTTTTGAAATC+AGG | + | chr5.1:28558068-28558087 | MS.gene49613:intron | 20.0% |
| ! | AACAAAAATTAAGGAGAAAG+TGG | - | chr5.1:28557617-28557636 | None:intergenic | 25.0% |
| ! | ACATTAGTATTAGAAGTTAG+GGG | - | chr5.1:28558359-28558378 | None:intergenic | 25.0% |
| ! | CACATTAGTATTAGAAGTTA+GGG | - | chr5.1:28558360-28558379 | None:intergenic | 25.0% |
| ! | TAGACATATCACAGTTAAAT+TGG | + | chr5.1:28559328-28559347 | MS.gene49613:CDS | 25.0% |
| ! | TTACCAAAGTAAACAAAACA+CGG | - | chr5.1:28558185-28558204 | None:intergenic | 25.0% |
| !! | AAACTGTAAGTTGTTTCAAT+AGG | - | chr5.1:28558221-28558240 | None:intergenic | 25.0% |
| !!! | CTTTTCTAAATTGGTTTTAC+AGG | + | chr5.1:28559057-28559076 | MS.gene49613:intron | 25.0% |
| !!! | GTTATTAGGGTTTTATTTAG+TGG | + | chr5.1:28557709-28557728 | MS.gene49613:intron | 25.0% |
| !!! | TACATCATATTTTTGTTGTG+AGG | - | chr5.1:28559477-28559496 | None:intergenic | 25.0% |
| !!! | TGTGTTTTTGCTTTGAAATT+CGG | + | chr5.1:28557640-28557659 | MS.gene49613:intron | 25.0% |
| ACAGTGATATGTAACACAAA+TGG | - | chr5.1:28558385-28558404 | None:intergenic | 30.0% | |
| ACATCTCGAATACTAAAGAA+AGG | - | chr5.1:28558758-28558777 | None:intergenic | 30.0% | |
| ACCACAAAAATTACATCAGA+TGG | - | chr5.1:28559191-28559210 | None:intergenic | 30.0% | |
| CACTTAATTGGGTCATTTAT+TGG | + | chr5.1:28558326-28558345 | MS.gene49613:intron | 30.0% | |
| CGATTACTACAAAACACTAA+AGG | + | chr5.1:28557228-28557247 | MS.gene49613:CDS | 30.0% | |
| GCACATTAGTATTAGAAGTT+AGG | - | chr5.1:28558361-28558380 | None:intergenic | 30.0% | |
| GCAGAATTCAAAATTAGAGT+CGG | - | chr5.1:28558421-28558440 | None:intergenic | 30.0% | |
| TATCCTGTGAATATGGAAAA+TGG | + | chr5.1:28557454-28557473 | MS.gene49613:CDS | 30.0% | |
| TGAATATGGAAAATGGTTGT+GGG | + | chr5.1:28557461-28557480 | MS.gene49613:CDS | 30.0% | |
| TTGAAGATACATATTCAACC+TGG | + | chr5.1:28559104-28559123 | MS.gene49613:CDS | 30.0% | |
| TTTATTTAGTGGTTGTGTTG+CGG | + | chr5.1:28557720-28557739 | MS.gene49613:intron | 30.0% | |
| ! | AATTAATTAGATTGGTCCCT+CGG | - | chr5.1:28557688-28557707 | None:intergenic | 30.0% |
| ! | ACCATCTGATGTAATTTTTG+TGG | + | chr5.1:28559187-28559206 | MS.gene49613:CDS | 30.0% |
| ! | TGAATTTTGGATGGTTTACT+TGG | + | chr5.1:28558471-28558490 | MS.gene49613:intron | 30.0% |
| ! | TTCCAGAAGTGATATCTTTT+CGG | - | chr5.1:28559267-28559286 | None:intergenic | 30.0% |
| !! | GGTATTGGTTAATCTTATCT+GGG | - | chr5.1:28557318-28557337 | None:intergenic | 30.0% |
| !! | GTTGCTATATTCTGCTATTT+TGG | + | chr5.1:28558587-28558606 | MS.gene49613:intron | 30.0% |
| !!! | ACATTGCATGTTTGTTTTGT+TGG | + | chr5.1:28557989-28558008 | MS.gene49613:intron | 30.0% |
| !!! | TACTAGTTTTGAAATCAGGT+GGG | + | chr5.1:28558072-28558091 | MS.gene49613:intron | 30.0% |
| !!! | TGCTGTTATTATGCTACTTT+TGG | + | chr5.1:28558565-28558584 | MS.gene49613:intron | 30.0% |
| !!! | TGTTTGTTTTGTTGGCTATT+AGG | + | chr5.1:28557997-28558016 | MS.gene49613:intron | 30.0% |
| !!! | TTACTAGTTTTGAAATCAGG+TGG | + | chr5.1:28558071-28558090 | MS.gene49613:intron | 30.0% |
| AAAGGAAGGTGAAAGTTGTA+AGG | + | chr5.1:28557566-28557585 | MS.gene49613:CDS | 35.0% | |
| AAATGGTTGTGGGAGTAATA+TGG | + | chr5.1:28557471-28557490 | MS.gene49613:CDS | 35.0% | |
| AACCACAATTGAAGCCATAT+TGG | - | chr5.1:28557781-28557800 | None:intergenic | 35.0% | |
| ACCACATCCTATATTCAAGA+GGG | + | chr5.1:28559220-28559239 | MS.gene49613:CDS | 35.0% | |
| AGATACATATTCAACCTGGT+TGG | + | chr5.1:28559108-28559127 | MS.gene49613:CDS | 35.0% | |
| AGATTAACCAATACCCTTCA+AGG | + | chr5.1:28557323-28557342 | MS.gene49613:CDS | 35.0% | |
| ATTGGATGATATTGTGACAC+CGG | + | chr5.1:28559346-28559365 | MS.gene49613:CDS | 35.0% | |
| CAATCTCGATCACAACATAA+CGG | - | chr5.1:28557820-28557839 | None:intergenic | 35.0% | |
| CTTTGCTTGGATACATAAGT+TGG | + | chr5.1:28559018-28559037 | MS.gene49613:intron | 35.0% | |
| GGCTTAGTGTAACAGTAAAT+AGG | - | chr5.1:28558928-28558947 | None:intergenic | 35.0% | |
| GTGAATATGGAAAATGGTTG+TGG | + | chr5.1:28557460-28557479 | MS.gene49613:CDS | 35.0% | |
| TAACATGTGATTGAGTGGTT+TGG | + | chr5.1:28558886-28558905 | MS.gene49613:intron | 35.0% | |
| TCGAATACTAAAGAAAGGAG+CGG | - | chr5.1:28558753-28558772 | None:intergenic | 35.0% | |
| TGGTCAATATCCTGTGAATA+TGG | + | chr5.1:28557447-28557466 | MS.gene49613:CDS | 35.0% | |
| TGTATCCAAGCAAAGTGAAA+AGG | - | chr5.1:28559013-28559032 | None:intergenic | 35.0% | |
| TGTTGGTGTAAGAAACTGAT+AGG | + | chr5.1:28558829-28558848 | MS.gene49613:intron | 35.0% | |
| TTATAAGGGTTGCAAAAGGA+AGG | + | chr5.1:28557552-28557571 | MS.gene49613:CDS | 35.0% | |
| TTCAAGGAAACAAGAGTTTG+AGG | + | chr5.1:28557351-28557370 | MS.gene49613:CDS | 35.0% | |
| TTGAATGTAACCACATGTGT+TGG | + | chr5.1:28558812-28558831 | MS.gene49613:intron | 35.0% | |
| ! | AGCTTTATAAGGGTTGCAAA+AGG | + | chr5.1:28557548-28557567 | MS.gene49613:CDS | 35.0% |
| ! | CAAACTCTTGTTTCCTTGAA+GGG | - | chr5.1:28557351-28557370 | None:intergenic | 35.0% |
| ! | CAACCATTTTCCATATTCAC+AGG | - | chr5.1:28557460-28557479 | None:intergenic | 35.0% |
| ! | TATGGCTTCAATTGTGGTTT+TGG | + | chr5.1:28557782-28557801 | MS.gene49613:intron | 35.0% |
| ! | TCAAACTCTTGTTTCCTTGA+AGG | - | chr5.1:28557352-28557371 | None:intergenic | 35.0% |
| !! | GGGTATTGGTTAATCTTATC+TGG | - | chr5.1:28557319-28557338 | None:intergenic | 35.0% |
| !! | TCATAGATCTGACGCTTTTT+AGG | - | chr5.1:28557421-28557440 | None:intergenic | 35.0% |
| !! | TTTTGTTGTGAGGTCAAACT+TGG | - | chr5.1:28559467-28559486 | None:intergenic | 35.0% |
| !!! | AAGCCGTGTTTTGTTTACTT+TGG | + | chr5.1:28558179-28558198 | MS.gene49613:intron | 35.0% |
| !!! | GTACAAAAGTCACTTTTCCT+GGG | + | chr5.1:28559138-28559157 | MS.gene49613:CDS | 35.0% |
| AACCCTTATAAAGCTCCTCA+AGG | - | chr5.1:28557543-28557562 | None:intergenic | 40.0% | |
| AAGCAAAGTGAAAAGGAAGG+GGG | - | chr5.1:28559006-28559025 | None:intergenic | 40.0% | |
| AGCCAATATGGCTTCAATTG+TGG | + | chr5.1:28557776-28557795 | MS.gene49613:intron | 40.0% | |
| AGGAATGTTCCTGATGAGTT+TGG | + | chr5.1:28557586-28557605 | MS.gene49613:CDS | 40.0% | |
| ATGTGACAAAATGACAGCAC+AGG | - | chr5.1:28558521-28558540 | None:intergenic | 40.0% | |
| ATTCAACCTGGTTGGAAGAA+GGG | + | chr5.1:28559116-28559135 | MS.gene49613:CDS | 40.0% | |
| CAAGCAAAGTGAAAAGGAAG+GGG | - | chr5.1:28559007-28559026 | None:intergenic | 40.0% | |
| CATCCTATATTCAAGAGGGA+CGG | + | chr5.1:28559224-28559243 | MS.gene49613:CDS | 40.0% | |
| CCAAGCAAAGTGAAAAGGAA+GGG | - | chr5.1:28559008-28559027 | None:intergenic | 40.0% | |
| CTAAGATTTCCTCTCTTGCT+TGG | - | chr5.1:28559419-28559438 | None:intergenic | 40.0% | |
| CTGTGTAACATGTGATTGAG+TGG | + | chr5.1:28558881-28558900 | MS.gene49613:intron | 40.0% | |
| GACCACATCCTATATTCAAG+AGG | + | chr5.1:28559219-28559238 | MS.gene49613:CDS | 40.0% | |
| GACCGAAAAGATATCACTTC+TGG | + | chr5.1:28559262-28559281 | MS.gene49613:CDS | 40.0% | |
| GGAATGTTCCTGATGAGTTT+GGG | + | chr5.1:28557587-28557606 | MS.gene49613:CDS | 40.0% | |
| GGGTTTGGAAAAGCTTATAC+AGG | + | chr5.1:28558092-28558111 | MS.gene49613:intron | 40.0% | |
| GTTTCTTACACCAACACATG+TGG | - | chr5.1:28558825-28558844 | None:intergenic | 40.0% | |
| TATTCAACCTGGTTGGAAGA+AGG | + | chr5.1:28559115-28559134 | MS.gene49613:CDS | 40.0% | |
| TCCAAGCAAAGTGAAAAGGA+AGG | - | chr5.1:28559009-28559028 | None:intergenic | 40.0% | |
| TCCCTCTTGAATATAGGATG+TGG | - | chr5.1:28559224-28559243 | None:intergenic | 40.0% | |
| TGGAGTTGTTGAGAGTGATT+TGG | + | chr5.1:28557510-28557529 | MS.gene49613:CDS | 40.0% | |
| TGTGATATGTCTACCATCCA+AGG | - | chr5.1:28559321-28559340 | None:intergenic | 40.0% | |
| TGTGATATTGCTGAGAATCG+CGG | + | chr5.1:28557745-28557764 | MS.gene49613:intron | 40.0% | |
| TTGGATGATATTGTGACACC+GGG | + | chr5.1:28559347-28559366 | MS.gene49613:CDS | 40.0% | |
| TTTCCGTCCCTCTTGAATAT+AGG | - | chr5.1:28559230-28559249 | None:intergenic | 40.0% | |
| ! | AGCCTTGAGGAGCTTTATAA+GGG | + | chr5.1:28557538-28557557 | MS.gene49613:CDS | 40.0% |
| ! | TAGCCTTGAGGAGCTTTATA+AGG | + | chr5.1:28557537-28557556 | MS.gene49613:CDS | 40.0% |
| ! | TTGCTTGGATCCTTTGAAAG+TGG | - | chr5.1:28559404-28559423 | None:intergenic | 40.0% |
| !! | ATGGAGGTTGATGAAAGTGT+TGG | + | chr5.1:28557490-28557509 | MS.gene49613:CDS | 40.0% |
| !! | TGAAGGTATGCCACTTTCAA+AGG | + | chr5.1:28559391-28559410 | MS.gene49613:CDS | 40.0% |
| !! | TGATTTGGTATGTAGCCTTG+AGG | + | chr5.1:28557525-28557544 | MS.gene49613:CDS | 40.0% |
| !!! | AAAGTCACTTTTCCTGGGAA+AGG | + | chr5.1:28559143-28559162 | MS.gene49613:CDS | 40.0% |
| !!! | GGTACAAAAGTCACTTTTCC+TGG | + | chr5.1:28559137-28559156 | MS.gene49613:CDS | 40.0% |
| !!! | GTTTTGAAATCAGGTGGGTT+TGG | + | chr5.1:28558077-28558096 | MS.gene49613:intron | 40.0% |
| ATACTAAAGAAAGGAGCGGC+TGG | - | chr5.1:28558749-28558768 | None:intergenic | 45.0% | |
| CGTCAGATCTATGATCGCAA+TGG | + | chr5.1:28557427-28557446 | MS.gene49613:CDS | 45.0% | |
| CTAAGAACCGACTAATCCGA+GGG | + | chr5.1:28557669-28557688 | MS.gene49613:intron | 45.0% | |
| CTCAACATCACAACCTTGGA+TGG | + | chr5.1:28559305-28559324 | MS.gene49613:CDS | 45.0% | |
| GACTCTCAACATCACAACCT+TGG | + | chr5.1:28559301-28559320 | MS.gene49613:CDS | 45.0% | |
| GCGATTCTCAGCAATATCAC+AGG | - | chr5.1:28557746-28557765 | None:intergenic | 45.0% | |
| GCGGTCAAATGAAGCCAATA+TGG | + | chr5.1:28557764-28557783 | MS.gene49613:intron | 45.0% | |
| GGAAACTATCTTCCAGGATC+TGG | + | chr5.1:28559164-28559183 | MS.gene49613:CDS | 45.0% | |
| GGAAGATAGTTTCCTTTCCC+AGG | - | chr5.1:28559158-28559177 | None:intergenic | 45.0% | |
| GGGAAAGGAAACTATCTTCC+AGG | + | chr5.1:28559158-28559177 | MS.gene49613:CDS | 45.0% | |
| TCAAAGGATCCAAGCAAGAG+AGG | + | chr5.1:28559407-28559426 | MS.gene49613:CDS | 45.0% | |
| TCCTTGAAGGGTTCCTTGAA+GGG | - | chr5.1:28557339-28557358 | None:intergenic | 45.0% | |
| TCTAAGAACCGACTAATCCG+AGG | + | chr5.1:28557668-28557687 | MS.gene49613:intron | 45.0% | |
| TGGTTGTGGGAGTAATATGG+AGG | + | chr5.1:28557474-28557493 | MS.gene49613:CDS | 45.0% | |
| TGTGACACCGGGATATGAAA+AGG | + | chr5.1:28559358-28559377 | MS.gene49613:CDS | 45.0% | |
| TGTTGTGAGGTCAAACTTGG+TGG | - | chr5.1:28559464-28559483 | None:intergenic | 45.0% | |
| TTCCTTGAAGGGTTCCTTGA+AGG | - | chr5.1:28557340-28557359 | None:intergenic | 45.0% | |
| TTTGTACCCTTCTTCCAACC+AGG | - | chr5.1:28559125-28559144 | None:intergenic | 45.0% | |
| ! | AAGGGTTCCTTGAAGGGTAT+TGG | - | chr5.1:28557333-28557352 | None:intergenic | 45.0% |
| ! | AGGCGTTTAGTCTGAAGTGT+CGG | + | chr5.1:28558849-28558868 | MS.gene49613:intron | 45.0% |
| ! | CCCTTCCTTTTCACTTTGCT+TGG | + | chr5.1:28559005-28559024 | MS.gene49613:intron | 45.0% |
| ! | GTGGATTACCCAAACTCATC+AGG | - | chr5.1:28557598-28557617 | None:intergenic | 45.0% |
| ! | TCACTTCTGGAAGCTCTTGT+TGG | + | chr5.1:28559275-28559294 | MS.gene49613:CDS | 45.0% |
| ACAGGCAACCAAAGGATGAG+GGG | - | chr5.1:28558726-28558745 | None:intergenic | 50.0% | |
| ACATCAGATGGTCCAGATCC+TGG | - | chr5.1:28559179-28559198 | None:intergenic | 50.0% | |
| ACCCTTCAAGGAACCCTTCA+AGG | + | chr5.1:28557335-28557354 | MS.gene49613:CDS | 50.0% | |
| GAAAAGGTCGTCGCTGATGA+AGG | + | chr5.1:28559374-28559393 | MS.gene49613:CDS | 50.0% | |
| GACAGGCAACCAAAGGATGA+GGG | - | chr5.1:28558727-28558746 | None:intergenic | 50.0% | |
| TGACAGCACAGGCAACATCA+TGG | - | chr5.1:28558510-28558529 | None:intergenic | 50.0% | |
| ! | GCGACGACCTTTTCATATCC+CGG | - | chr5.1:28559368-28559387 | None:intergenic | 50.0% |
| !! | GATTGGTCCCTCGGATTAGT+CGG | - | chr5.1:28557679-28557698 | None:intergenic | 50.0% |
| AAAGAAAGGAGCGGCTGGAC+AGG | - | chr5.1:28558744-28558763 | None:intergenic | 55.0% | |
| AGGGGCAGGCAGGTATAAGA+AGG | - | chr5.1:28558708-28558727 | None:intergenic | 55.0% | |
| GGACAGGCAACCAAAGGATG+AGG | - | chr5.1:28558728-28558747 | None:intergenic | 55.0% | |
| GCAACCAAAGGATGAGGGGC+AGG | - | chr5.1:28558722-28558741 | None:intergenic | 60.0% | |
| CCAAAGGATGAGGGGCAGGC+AGG | - | chr5.1:28558718-28558737 | None:intergenic | 65.0% | |
| CCTGCCTGCCCCTCATCCTT+TGG | + | chr5.1:28558715-28558734 | MS.gene49613:intron | 65.0% | |
| GCGGCTGGACAGGCAACCAA+AGG | - | chr5.1:28558734-28558753 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 28557217 | 28559529 | 28557217 | ID=MS.gene49613 |
| chr5.1 | mRNA | 28557217 | 28559529 | 28557217 | ID=MS.gene49613.t1;Parent=MS.gene49613 |
| chr5.1 | exon | 28557217 | 28557608 | 28557217 | ID=MS.gene49613.t1.exon1;Parent=MS.gene49613.t1 |
| chr5.1 | CDS | 28557217 | 28557608 | 28557217 | ID=cds.MS.gene49613.t1;Parent=MS.gene49613.t1 |
| chr5.1 | exon | 28559079 | 28559529 | 28559079 | ID=MS.gene49613.t1.exon2;Parent=MS.gene49613.t1 |
| chr5.1 | CDS | 28559079 | 28559529 | 28559079 | ID=cds.MS.gene49613.t1;Parent=MS.gene49613.t1 |
| Gene Sequence |
| Protein sequence |
