Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55340.t1 | KEH27844.1 | 96.9 | 227 | 7 | 0 | 1 | 227 | 17 | 243 | 1.30E-116 | 429.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55340.t1 | Q67Y99 | 76.1 | 222 | 52 | 1 | 2 | 223 | 110 | 330 | 8.5e-93 | 341.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55340.t1 | A0A072UDI9 | 96.9 | 227 | 7 | 0 | 1 | 227 | 17 | 243 | 9.2e-117 | 429.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049153 | MS.gene55340 | 0.803254 | 3.81E-49 | -1.69E-46 |
| MS.gene049346 | MS.gene55340 | 0.802084 | 6.64E-49 | -1.69E-46 |
| MS.gene049356 | MS.gene55340 | 0.815389 | 9.48E-52 | -1.69E-46 |
| MS.gene049758 | MS.gene55340 | 0.812128 | 4.95E-51 | -1.69E-46 |
| MS.gene050301 | MS.gene55340 | 0.864341 | 1.30E-64 | -1.69E-46 |
| MS.gene050397 | MS.gene55340 | 0.822971 | 1.78E-53 | -1.69E-46 |
| MS.gene050400 | MS.gene55340 | 0.825184 | 5.38E-54 | -1.69E-46 |
| MS.gene050426 | MS.gene55340 | -0.809036 | 2.31E-50 | -1.69E-46 |
| MS.gene050464 | MS.gene55340 | 0.816618 | 5.04E-52 | -1.69E-46 |
| MS.gene050593 | MS.gene55340 | 0.805932 | 1.05E-49 | -1.69E-46 |
| MS.gene050625 | MS.gene55340 | 0.820609 | 6.27E-53 | -1.69E-46 |
| MS.gene050650 | MS.gene55340 | 0.813399 | 2.61E-51 | -1.69E-46 |
| MS.gene050670 | MS.gene55340 | 0.854291 | 1.36E-61 | -1.69E-46 |
| MS.gene050971 | MS.gene55340 | 0.802417 | 5.67E-49 | -1.69E-46 |
| MS.gene05105 | MS.gene55340 | 0.809236 | 2.09E-50 | -1.69E-46 |
| MS.gene051360 | MS.gene55340 | 0.846626 | 1.93E-59 | -1.69E-46 |
| MS.gene051387 | MS.gene55340 | 0.82046 | 6.78E-53 | -1.69E-46 |
| MS.gene051521 | MS.gene55340 | 0.80076 | 1.24E-48 | -1.69E-46 |
| MS.gene051525 | MS.gene55340 | 0.883114 | 5.90E-71 | -1.69E-46 |
| MS.gene051582 | MS.gene55340 | 0.827306 | 1.68E-54 | -1.69E-46 |
| MS.gene051860 | MS.gene55340 | 0.854297 | 1.35E-61 | -1.69E-46 |
| MS.gene052011 | MS.gene55340 | -0.848285 | 6.76E-60 | -1.69E-46 |
| MS.gene052077 | MS.gene55340 | 0.814959 | 1.18E-51 | -1.69E-46 |
| MS.gene052134 | MS.gene55340 | 0.806434 | 8.24E-50 | -1.69E-46 |
| MS.gene052135 | MS.gene55340 | 0.823936 | 1.06E-53 | -1.69E-46 |
| MS.gene052136 | MS.gene55340 | 0.806932 | 6.47E-50 | -1.69E-46 |
| MS.gene052188 | MS.gene55340 | 0.820182 | 7.85E-53 | -1.69E-46 |
| MS.gene052253 | MS.gene55340 | 0.874289 | 7.59E-68 | -1.69E-46 |
| MS.gene052310 | MS.gene55340 | 0.824357 | 8.43E-54 | -1.69E-46 |
| MS.gene052340 | MS.gene55340 | 0.859655 | 3.56E-63 | -1.69E-46 |
| MS.gene052414 | MS.gene55340 | 0.802789 | 4.75E-49 | -1.69E-46 |
| MS.gene052421 | MS.gene55340 | 0.801031 | 1.09E-48 | -1.69E-46 |
| MS.gene052481 | MS.gene55340 | 0.830045 | 3.66E-55 | -1.69E-46 |
| MS.gene052485 | MS.gene55340 | 0.832641 | 8.42E-56 | -1.69E-46 |
| MS.gene052982 | MS.gene55340 | 0.831311 | 1.79E-55 | -1.69E-46 |
| MS.gene053169 | MS.gene55340 | 0.831344 | 1.76E-55 | -1.69E-46 |
| MS.gene05316 | MS.gene55340 | 0.812031 | 5.20E-51 | -1.69E-46 |
| MS.gene053209 | MS.gene55340 | 0.843394 | 1.44E-58 | -1.69E-46 |
| MS.gene053449 | MS.gene55340 | 0.819649 | 1.04E-52 | -1.69E-46 |
| MS.gene053557 | MS.gene55340 | 0.812885 | 3.38E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene55340 | 0.824757 | 6.79E-54 | -1.69E-46 |
| MS.gene053928 | MS.gene55340 | 0.812442 | 4.23E-51 | -1.69E-46 |
| MS.gene054010 | MS.gene55340 | 0.824933 | 6.17E-54 | -1.69E-46 |
| MS.gene054011 | MS.gene55340 | 0.819998 | 8.65E-53 | -1.69E-46 |
| MS.gene054012 | MS.gene55340 | 0.81895 | 1.50E-52 | -1.69E-46 |
| MS.gene054013 | MS.gene55340 | 0.817184 | 3.76E-52 | -1.69E-46 |
| MS.gene054123 | MS.gene55340 | 0.821341 | 4.25E-53 | -1.69E-46 |
| MS.gene054183 | MS.gene55340 | 0.823109 | 1.65E-53 | -1.69E-46 |
| MS.gene054556 | MS.gene55340 | 0.842143 | 3.09E-58 | -1.69E-46 |
| MS.gene05455 | MS.gene55340 | 0.808081 | 3.69E-50 | -1.69E-46 |
| MS.gene055116 | MS.gene55340 | 0.849753 | 2.64E-60 | -1.69E-46 |
| MS.gene055277 | MS.gene55340 | 0.81014 | 1.34E-50 | -1.69E-46 |
| MS.gene055369 | MS.gene55340 | 0.824697 | 7.01E-54 | -1.69E-46 |
| MS.gene055390 | MS.gene55340 | 0.810751 | 9.86E-51 | -1.69E-46 |
| MS.gene05553 | MS.gene55340 | 0.847244 | 1.31E-59 | -1.69E-46 |
| MS.gene05556 | MS.gene55340 | 0.821704 | 3.51E-53 | -1.69E-46 |
| MS.gene055666 | MS.gene55340 | 0.824801 | 6.63E-54 | -1.69E-46 |
| MS.gene055909 | MS.gene55340 | 0.801348 | 9.39E-49 | -1.69E-46 |
| MS.gene055911 | MS.gene55340 | 0.80714 | 5.85E-50 | -1.69E-46 |
| MS.gene05594 | MS.gene55340 | 0.801204 | 1.01E-48 | -1.69E-46 |
| MS.gene056191 | MS.gene55340 | 0.826792 | 2.23E-54 | -1.69E-46 |
| MS.gene056407 | MS.gene55340 | 0.843829 | 1.10E-58 | -1.69E-46 |
| MS.gene056410 | MS.gene55340 | 0.814008 | 1.92E-51 | -1.69E-46 |
| MS.gene056447 | MS.gene55340 | 0.802109 | 6.56E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene55340 | 0.818998 | 1.46E-52 | -1.69E-46 |
| MS.gene056514 | MS.gene55340 | 0.805698 | 1.18E-49 | -1.69E-46 |
| MS.gene056723 | MS.gene55340 | 0.824616 | 7.33E-54 | -1.69E-46 |
| MS.gene056902 | MS.gene55340 | 0.826993 | 2.00E-54 | -1.69E-46 |
| MS.gene057124 | MS.gene55340 | 0.82567 | 4.13E-54 | -1.69E-46 |
| MS.gene057330 | MS.gene55340 | 0.801575 | 8.44E-49 | -1.69E-46 |
| MS.gene057396 | MS.gene55340 | 0.834841 | 2.37E-56 | -1.69E-46 |
| MS.gene057448 | MS.gene55340 | 0.831434 | 1.67E-55 | -1.69E-46 |
| MS.gene057449 | MS.gene55340 | 0.816378 | 5.70E-52 | -1.69E-46 |
| MS.gene057450 | MS.gene55340 | 0.829682 | 4.49E-55 | -1.69E-46 |
| MS.gene057469 | MS.gene55340 | 0.814555 | 1.45E-51 | -1.69E-46 |
| MS.gene057476 | MS.gene55340 | 0.818415 | 1.98E-52 | -1.69E-46 |
| MS.gene057749 | MS.gene55340 | 0.809743 | 1.63E-50 | -1.69E-46 |
| MS.gene057823 | MS.gene55340 | 0.807251 | 5.54E-50 | -1.69E-46 |
| MS.gene058002 | MS.gene55340 | 0.835667 | 1.47E-56 | -1.69E-46 |
| MS.gene058007 | MS.gene55340 | 0.828355 | 9.42E-55 | -1.69E-46 |
| MS.gene05811 | MS.gene55340 | 0.853315 | 2.59E-61 | -1.69E-46 |
| MS.gene058293 | MS.gene55340 | 0.809206 | 2.12E-50 | -1.69E-46 |
| MS.gene058376 | MS.gene55340 | 0.808141 | 3.58E-50 | -1.69E-46 |
| MS.gene05842 | MS.gene55340 | 0.839206 | 1.82E-57 | -1.69E-46 |
| MS.gene058444 | MS.gene55340 | 0.846707 | 1.83E-59 | -1.69E-46 |
| MS.gene058700 | MS.gene55340 | 0.889615 | 2.07E-73 | -1.69E-46 |
| MS.gene058928 | MS.gene55340 | 0.803044 | 4.21E-49 | -1.69E-46 |
| MS.gene058948 | MS.gene55340 | 0.803934 | 2.75E-49 | -1.69E-46 |
| MS.gene058995 | MS.gene55340 | 0.815545 | 8.75E-52 | -1.69E-46 |
| MS.gene05907 | MS.gene55340 | 0.875336 | 3.34E-68 | -1.69E-46 |
| MS.gene059082 | MS.gene55340 | 0.824317 | 8.62E-54 | -1.69E-46 |
| MS.gene059366 | MS.gene55340 | 0.804295 | 2.31E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene55340 | 0.848835 | 4.76E-60 | -1.69E-46 |
| MS.gene059462 | MS.gene55340 | 0.828598 | 8.22E-55 | -1.69E-46 |
| MS.gene059597 | MS.gene55340 | 0.825328 | 4.98E-54 | -1.69E-46 |
| MS.gene059676 | MS.gene55340 | 0.826002 | 3.44E-54 | -1.69E-46 |
| MS.gene059688 | MS.gene55340 | 0.85376 | 1.93E-61 | -1.69E-46 |
| MS.gene059692 | MS.gene55340 | 0.8477 | 9.79E-60 | -1.69E-46 |
| MS.gene059695 | MS.gene55340 | 0.850723 | 1.41E-60 | -1.69E-46 |
| MS.gene059807 | MS.gene55340 | 0.823502 | 1.34E-53 | -1.69E-46 |
| MS.gene05984 | MS.gene55340 | 0.834569 | 2.78E-56 | -1.69E-46 |
| MS.gene059894 | MS.gene55340 | 0.80097 | 1.12E-48 | -1.69E-46 |
| MS.gene059933 | MS.gene55340 | 0.805843 | 1.10E-49 | -1.69E-46 |
| MS.gene060403 | MS.gene55340 | 0.846842 | 1.68E-59 | -1.69E-46 |
| MS.gene060837 | MS.gene55340 | 0.85018 | 2.01E-60 | -1.69E-46 |
| MS.gene060986 | MS.gene55340 | 0.866077 | 3.71E-65 | -1.69E-46 |
| MS.gene061049 | MS.gene55340 | 0.837532 | 4.92E-57 | -1.69E-46 |
| MS.gene061051 | MS.gene55340 | -0.816418 | 5.59E-52 | -1.69E-46 |
| MS.gene061154 | MS.gene55340 | 0.87046 | 1.44E-66 | -1.69E-46 |
| MS.gene061159 | MS.gene55340 | 0.828805 | 7.33E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55340.t1 | MTR_5g043480 | 96.916 | 227 | 7 | 0 | 1 | 227 | 17 | 243 | 8.11e-166 | 457 |
| MS.gene55340.t1 | MTR_5g043480 | 95.694 | 209 | 9 | 0 | 19 | 227 | 105 | 313 | 1.03e-148 | 416 |
| MS.gene55340.t1 | MTR_5g043480 | 98.148 | 162 | 3 | 0 | 1 | 162 | 17 | 178 | 2.93e-113 | 323 |
| MS.gene55340.t1 | MTR_5g043480 | 98.148 | 162 | 3 | 0 | 1 | 162 | 107 | 268 | 6.52e-112 | 323 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55340.t1 | AT2G03390 | 76.018 | 221 | 52 | 1 | 3 | 223 | 1 | 220 | 1.07e-127 | 360 |
| MS.gene55340.t1 | AT2G03390 | 76.126 | 222 | 52 | 1 | 2 | 223 | 110 | 330 | 3.18e-127 | 363 |
| MS.gene55340.t1 | AT2G03390 | 76.126 | 222 | 52 | 1 | 2 | 223 | 110 | 330 | 3.18e-127 | 363 |
| MS.gene55340.t1 | AT2G03390 | 75.776 | 161 | 39 | 0 | 2 | 162 | 110 | 270 | 1.48e-86 | 258 |
| MS.gene55340.t1 | AT2G03390 | 75.776 | 161 | 39 | 0 | 2 | 162 | 110 | 270 | 1.48e-86 | 258 |
| MS.gene55340.t1 | AT2G03390 | 74.497 | 149 | 38 | 0 | 2 | 150 | 110 | 258 | 2.01e-77 | 234 |
| MS.gene55340.t1 | AT2G03390 | 74.497 | 149 | 38 | 0 | 2 | 150 | 110 | 258 | 2.01e-77 | 234 |
Find 45 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCCCGCAGTTGCTTAAT+AGG | 0.261631 | 5.2:-67735628 | None:intergenic |
| AAGAGACTCTGCTTCAAGTT+TGG | 0.332003 | 5.2:-67734023 | None:intergenic |
| CTTACTTTGTCTGGTTTGTC+AGG | 0.358622 | 5.2:-67735464 | None:intergenic |
| ATAGATGCACTTACTTTGTC+TGG | 0.369403 | 5.2:-67735473 | None:intergenic |
| TTCCCTCCATCTTCGTCACT+TGG | 0.379098 | 5.2:-67735688 | None:intergenic |
| TCTCCCGCAGTTGCTTAATA+GGG | 0.393158 | 5.2:-67735627 | None:intergenic |
| GCACAATATGTCTTCCGCTT+GGG | 0.393631 | 5.2:+67734079 | MS.gene55340:CDS |
| AAAGTAAAGCATAAAATGTT+TGG | 0.407562 | 5.2:+67734106 | MS.gene55340:CDS |
| TGCTGCATCAGCTAAAGCTT+TGG | 0.408060 | 5.2:+67734045 | MS.gene55340:CDS |
| CCTCCATCTTCGTCACTTGG+TGG | 0.409997 | 5.2:-67735685 | None:intergenic |
| CCATATGCCACCAGTAGATC+TGG | 0.419863 | 5.2:-67734808 | None:intergenic |
| GAACTTGATTCACTGCATAC+TGG | 0.426333 | 5.2:-67734341 | None:intergenic |
| TATGCAGTGAATCAAGTTCA+TGG | 0.439684 | 5.2:+67734345 | MS.gene55340:CDS |
| CTCTAAGTATTATACGTCTT+CGG | 0.463511 | 5.2:+67733677 | MS.gene55340:CDS |
| TGCACAATATGTCTTCCGCT+TGG | 0.468704 | 5.2:+67734078 | MS.gene55340:CDS |
| GCTAATCAAACCTGATAAAA+CGG | 0.469627 | 5.2:-67734413 | None:intergenic |
| CTCCATCTTCGTCACTTGGT+GGG | 0.473073 | 5.2:-67735684 | None:intergenic |
| CCAGATCTACTGGTGGCATA+TGG | 0.477740 | 5.2:+67734808 | MS.gene55340:CDS |
| ATCACGTAATTTAGCAGCCA+AGG | 0.491405 | 5.2:-67733993 | None:intergenic |
| TTCGTCACTTGGTGGGTCAA+AGG | 0.495368 | 5.2:-67735677 | None:intergenic |
| CACAATATGTCTTCCGCTTG+GGG | 0.503833 | 5.2:+67734080 | MS.gene55340:CDS |
| TCGTCACTTGGTGGGTCAAA+GGG | 0.504592 | 5.2:-67735676 | None:intergenic |
| TTCTATGGAATGGATTCAGC+TGG | 0.505006 | 5.2:+67735595 | MS.gene55340:CDS |
| TAGAACAGAAAAGACATGTA+GGG | 0.523219 | 5.2:-67735577 | None:intergenic |
| GCGTACTGAACCAGATCTAC+TGG | 0.524216 | 5.2:+67734798 | MS.gene55340:CDS |
| CGAGAATGAAGATTATGCCT+TGG | 0.526531 | 5.2:+67733976 | MS.gene55340:CDS |
| TTTATCGAAGGTTGAAGAAG+AGG | 0.534000 | 5.2:+67733594 | MS.gene55340:intron |
| CATCCCTATTAAGCAACTGC+GGG | 0.535038 | 5.2:+67735624 | MS.gene55340:CDS |
| TAGAGCTATAATCGTAGGAA+TGG | 0.538085 | 5.2:+67734316 | MS.gene55340:CDS |
| CAGTGAATCAAGTTCATGGA+TGG | 0.538216 | 5.2:+67734349 | MS.gene55340:CDS |
| GTGGGTCAAAGGGTATTTCG+TGG | 0.539921 | 5.2:-67735666 | None:intergenic |
| ATAGAACAGAAAAGACATGT+AGG | 0.565791 | 5.2:-67735578 | None:intergenic |
| GGCTATAGAGCTATAATCGT+AGG | 0.576059 | 5.2:+67734311 | MS.gene55340:intron |
| GACCCACCAAGTGACGAAGA+TGG | 0.585639 | 5.2:+67735682 | MS.gene55340:CDS |
| CACCAAGTGACGAAGATGGA+GGG | 0.603276 | 5.2:+67735686 | MS.gene55340:CDS |
| TCAAAGGGTATTTCGTGGCG+CGG | 0.632604 | 5.2:-67735661 | None:intergenic |
| AGAACAGAAAAGACATGTAG+GGG | 0.640432 | 5.2:-67735576 | None:intergenic |
| AACCTGATAAAACGGTTGAG+TGG | 0.641728 | 5.2:-67734405 | None:intergenic |
| CCACCAAGTGACGAAGATGG+AGG | 0.644237 | 5.2:+67735685 | MS.gene55340:CDS |
| TCATCCCTATTAAGCAACTG+CGG | 0.646965 | 5.2:+67735623 | MS.gene55340:CDS |
| ATGTCAGTGTGCTTTAAACA+TGG | 0.651748 | 5.2:+67732849 | None:intergenic |
| GCTTTACTTTCTGCCCCAAG+CGG | 0.652168 | 5.2:-67734093 | None:intergenic |
| TACTGAACCAGATCTACTGG+TGG | 0.678822 | 5.2:+67734801 | MS.gene55340:CDS |
| CAAGTTAAGAAGTTGTCTCG+TGG | 0.688846 | 5.2:+67734380 | MS.gene55340:CDS |
| GCTGCGAAACAAACTTACTG+AGG | 0.697627 | 5.2:+67732894 | MS.gene55340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAGTAATAATATTAAT+TGG | - | chr5.2:67735322-67735341 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTTTGAACA+AGG | - | chr5.2:67734244-67734263 | None:intergenic | 10.0% |
| !! | ATGAATTGTAAATGTATTTA+TGG | + | chr5.2:67734653-67734672 | MS.gene55340:intron | 15.0% |
| !! | CTTATAGAGTTAAAATTATT+CGG | - | chr5.2:67734502-67734521 | None:intergenic | 15.0% |
| !! | TACAATAACAAAAACATATA+AGG | - | chr5.2:67734693-67734712 | None:intergenic | 15.0% |
| !!! | AATAATATTAATTGGTTCAA+TGG | - | chr5.2:67735314-67735333 | None:intergenic | 15.0% |
| !!! | TAATAATTTGTTGTATTGAT+AGG | - | chr5.2:67734150-67734169 | None:intergenic | 15.0% |
| !!! | TGTTATTTATGTTCTTTAAT+TGG | + | chr5.2:67735519-67735538 | MS.gene55340:intron | 15.0% |
| !!! | TTTGTTATTGTATTAATAAC+TGG | + | chr5.2:67734701-67734720 | MS.gene55340:intron | 15.0% |
| !! | AAAGTAAAGCATAAAATGTT+TGG | + | chr5.2:67734106-67734125 | MS.gene55340:CDS | 20.0% |
| !! | ATTTCTTCATCATTTATTCT+AGG | + | chr5.2:67733704-67733723 | MS.gene55340:intron | 20.0% |
| !! | CAAGAAAGAAAAAAAATCAT+TGG | - | chr5.2:67733413-67733432 | None:intergenic | 20.0% |
| !! | TAAGCAAAAACAATCAAAAA+GGG | + | chr5.2:67733621-67733640 | MS.gene55340:CDS | 20.0% |
| !! | TAATTAGCAACATATTGATA+AGG | + | chr5.2:67734177-67734196 | MS.gene55340:intron | 20.0% |
| !! | TCTTCAATTCTTATTATTAC+TGG | + | chr5.2:67734541-67734560 | MS.gene55340:intron | 20.0% |
| !! | TGATAAATATTGTTTATCGA+AGG | + | chr5.2:67733582-67733601 | MS.gene55340:intron | 20.0% |
| !! | TTAAGCAAAAACAATCAAAA+AGG | + | chr5.2:67733620-67733639 | MS.gene55340:CDS | 20.0% |
| !!! | AAATGAAAATCACATTTTCT+CGG | + | chr5.2:67733323-67733342 | MS.gene55340:intron | 20.0% |
| !!! | ATCATTTTATATTAGGTCAA+AGG | - | chr5.2:67733248-67733267 | None:intergenic | 20.0% |
| !!! | GACTAGAATCATTTTATATT+AGG | - | chr5.2:67733255-67733274 | None:intergenic | 20.0% |
| !!! | TGAATTATTCTGTTTCTATA+TGG | + | chr5.2:67734460-67734479 | MS.gene55340:intron | 20.0% |
| !!! | TTTTTTTTTTTTGAACAAGG+AGG | - | chr5.2:67734241-67734260 | None:intergenic | 20.0% |
| ! | AAGCAAAAACAATCAAAAAG+GGG | + | chr5.2:67733622-67733641 | MS.gene55340:CDS | 25.0% |
| ! | ATGAAATTATTCATCCAAAC+AGG | - | chr5.2:67734853-67734872 | None:intergenic | 25.0% |
| ! | GAATACAATAACAGTATTAG+TGG | - | chr5.2:67732933-67732952 | None:intergenic | 25.0% |
| ! | TACTAAATGTTGTCAAATAG+TGG | + | chr5.2:67733124-67733143 | MS.gene55340:intron | 25.0% |
| ! | TATAAGAAAACAGTTTGACT+TGG | - | chr5.2:67735037-67735056 | None:intergenic | 25.0% |
| ! | TGAAATTATTCATCCAAACA+GGG | - | chr5.2:67734852-67734871 | None:intergenic | 25.0% |
| ! | TTCAAGTATGATGTAGAATT+CGG | + | chr5.2:67733215-67733234 | MS.gene55340:intron | 25.0% |
| ! | TTTCTGTAAACAAATACATG+TGG | + | chr5.2:67735390-67735409 | MS.gene55340:intron | 25.0% |
| !! | AATATAATGTGAGACTGTTT+TGG | - | chr5.2:67735153-67735172 | None:intergenic | 25.0% |
| !! | ATAAGAAAACAGTTTGACTT+GGG | - | chr5.2:67735036-67735055 | None:intergenic | 25.0% |
| !! | TTCAGATCATCTAATTTTTC+TGG | + | chr5.2:67733528-67733547 | MS.gene55340:intron | 25.0% |
| !!! | TCATCTAATTTTTCTGGTAT+TGG | + | chr5.2:67733534-67733553 | MS.gene55340:intron | 25.0% |
| AGAACCTAGACATTTGAAAA+AGG | - | chr5.2:67734769-67734788 | None:intergenic | 30.0% | |
| ATAGAACAGAAAAGACATGT+AGG | - | chr5.2:67735581-67735600 | None:intergenic | 30.0% | |
| ATCTGAAAACATATACACGA+AGG | - | chr5.2:67733515-67733534 | None:intergenic | 30.0% | |
| ATGTACAGAAAAGCAATTGT+AGG | - | chr5.2:67735258-67735277 | None:intergenic | 30.0% | |
| ATGTTGTCAATCACAAATTG+CGG | - | chr5.2:67733179-67733198 | None:intergenic | 30.0% | |
| ATTCTAGTCAAATCGAAGTT+TGG | + | chr5.2:67733266-67733285 | MS.gene55340:intron | 30.0% | |
| ATTGTATTCTATACCAAACC+AGG | + | chr5.2:67732944-67732963 | MS.gene55340:intron | 30.0% | |
| CAATTTGTGATTGACAACAT+TGG | + | chr5.2:67733179-67733198 | MS.gene55340:intron | 30.0% | |
| CAGTCTCACATTATATTTGA+TGG | + | chr5.2:67735156-67735175 | MS.gene55340:intron | 30.0% | |
| CATCGAGGAATCAAAATATA+AGG | - | chr5.2:67734282-67734301 | None:intergenic | 30.0% | |
| CTCTAAGTATTATACGTCTT+CGG | + | chr5.2:67733677-67733696 | MS.gene55340:CDS | 30.0% | |
| CTTATGGAAAAAGCTGAAAA+CGG | + | chr5.2:67735092-67735111 | MS.gene55340:intron | 30.0% | |
| GAACCTAGACATTTGAAAAA+GGG | - | chr5.2:67734768-67734787 | None:intergenic | 30.0% | |
| GCTAATCAAACCTGATAAAA+CGG | - | chr5.2:67734416-67734435 | None:intergenic | 30.0% | |
| GCTGAATATCTCATAAATGT+GGG | + | chr5.2:67734199-67734218 | MS.gene55340:intron | 30.0% | |
| TAATTGTTCAGACCTTTGAT+TGG | + | chr5.2:67734739-67734758 | MS.gene55340:intron | 30.0% | |
| TAGAACAGAAAAGACATGTA+GGG | - | chr5.2:67735580-67735599 | None:intergenic | 30.0% | |
| TAGACACTATGTAACAACAT+TGG | - | chr5.2:67733046-67733065 | None:intergenic | 30.0% | |
| TCATACAAGGGTAAAAAAAC+AGG | - | chr5.2:67733438-67733457 | None:intergenic | 30.0% | |
| TCTGAAAACATATACACGAA+GGG | - | chr5.2:67733514-67733533 | None:intergenic | 30.0% | |
| ! | AAAAGTATATGTGCGTGTTT+GGG | - | chr5.2:67733381-67733400 | None:intergenic | 30.0% |
| ! | AAGTTATTCTAGAGAGCTTA+TGG | + | chr5.2:67735076-67735095 | MS.gene55340:intron | 30.0% |
| ! | TACATGTCTTTTCTGTTCTA+TGG | + | chr5.2:67735580-67735599 | MS.gene55340:CDS | 30.0% |
| !! | AACTCAGCTATTTTCACATT+TGG | - | chr5.2:67733794-67733813 | None:intergenic | 30.0% |
| !! | TTATCAGGTTTGATTAGCTT+CGG | + | chr5.2:67734418-67734437 | MS.gene55340:intron | 30.0% |
| !!! | CACAAACAACTTGTTACTTT+TGG | + | chr5.2:67735204-67735223 | MS.gene55340:intron | 30.0% |
| !!! | TTTCCCTTTTTCAAATGTCT+AGG | + | chr5.2:67734762-67734781 | MS.gene55340:intron | 30.0% |
| !!! | TTTTTTTGAACAAGGAGGAA+AGG | - | chr5.2:67734236-67734255 | None:intergenic | 30.0% |
| AAGCTGACCAACAGATTATA+TGG | - | chr5.2:67733899-67733918 | None:intergenic | 35.0% | |
| AGAACAGAAAAGACATGTAG+GGG | - | chr5.2:67735579-67735598 | None:intergenic | 35.0% | |
| AGTGTCTATACGTTACAACA+TGG | + | chr5.2:67733058-67733077 | MS.gene55340:intron | 35.0% | |
| ATAGATGCACTTACTTTGTC+TGG | - | chr5.2:67735476-67735495 | None:intergenic | 35.0% | |
| ATGAAGTTCCATGTTGTTCT+TGG | + | chr5.2:67735363-67735382 | MS.gene55340:intron | 35.0% | |
| CTTTCCTCCATATAATCTGT+TGG | + | chr5.2:67733889-67733908 | MS.gene55340:intron | 35.0% | |
| GAAAAAGGGAAACCAATCAA+AGG | - | chr5.2:67734754-67734773 | None:intergenic | 35.0% | |
| GAAAGAAACCAAGAACAACA+TGG | - | chr5.2:67735374-67735393 | None:intergenic | 35.0% | |
| GGCTGAATATCTCATAAATG+TGG | + | chr5.2:67734198-67734217 | MS.gene55340:intron | 35.0% | |
| GGTTCAATGGTAAATGTAAC+TGG | - | chr5.2:67735301-67735320 | None:intergenic | 35.0% | |
| GTGCTTTATAACTGTTTCCA+GGG | + | chr5.2:67735541-67735560 | MS.gene55340:intron | 35.0% | |
| TAGAGCTATAATCGTAGGAA+TGG | + | chr5.2:67734316-67734335 | MS.gene55340:CDS | 35.0% | |
| TATGCAGTGAATCAAGTTCA+TGG | + | chr5.2:67734345-67734364 | MS.gene55340:CDS | 35.0% | |
| TCACAAATTGCGGAAAATAG+AGG | - | chr5.2:67733169-67733188 | None:intergenic | 35.0% | |
| TTTATCGAAGGTTGAAGAAG+AGG | + | chr5.2:67733594-67733613 | MS.gene55340:intron | 35.0% | |
| ! | GAAAAGTATATGTGCGTGTT+TGG | - | chr5.2:67733382-67733401 | None:intergenic | 35.0% |
| ! | GTCTTTTCTGTTCTATGGAA+TGG | + | chr5.2:67735585-67735604 | MS.gene55340:CDS | 35.0% |
| ! | TATTACTTTGTTTGCGTTCC+TGG | + | chr5.2:67735330-67735349 | MS.gene55340:intron | 35.0% |
| ! | TGAAAATCACATTTTCTCGG+AGG | + | chr5.2:67733326-67733345 | MS.gene55340:intron | 35.0% |
| ! | TGAGTTGAACTGATGTTTGA+GGG | + | chr5.2:67733808-67733827 | MS.gene55340:intron | 35.0% |
| AACCTGATAAAACGGTTGAG+TGG | - | chr5.2:67734408-67734427 | None:intergenic | 40.0% | |
| AACCTGCAGAATAGATCATC+AGG | + | chr5.2:67734573-67734592 | MS.gene55340:intron | 40.0% | |
| AACTTCATACCACAGAAACC+AGG | - | chr5.2:67735351-67735370 | None:intergenic | 40.0% | |
| ACATCTACTTCAAGTAGGTC+TGG | - | chr5.2:67732983-67733002 | None:intergenic | 40.0% | |
| AGTGATTAAGTGTGCGTGTT+TGG | + | chr5.2:67733740-67733759 | MS.gene55340:intron | 40.0% | |
| ATCACGTAATTTAGCAGCCA+AGG | - | chr5.2:67733996-67734015 | None:intergenic | 40.0% | |
| ATCTGAACTGCAAGCGAAAT+TGG | - | chr5.2:67733942-67733961 | None:intergenic | 40.0% | |
| CAAGTTAAGAAGTTGTCTCG+TGG | + | chr5.2:67734380-67734399 | MS.gene55340:CDS | 40.0% | |
| CACACACATCTACTTCAAGT+AGG | - | chr5.2:67732988-67733007 | None:intergenic | 40.0% | |
| CAGTGAATCAAGTTCATGGA+TGG | + | chr5.2:67734349-67734368 | MS.gene55340:CDS | 40.0% | |
| CGAGAATGAAGATTATGCCT+TGG | + | chr5.2:67733976-67733995 | MS.gene55340:CDS | 40.0% | |
| CTCTCGATAACTTGAATCGA+TGG | + | chr5.2:67733465-67733484 | MS.gene55340:intron | 40.0% | |
| CTGACCAACAGATTATATGG+AGG | - | chr5.2:67733896-67733915 | None:intergenic | 40.0% | |
| GAACTTGATTCACTGCATAC+TGG | - | chr5.2:67734344-67734363 | None:intergenic | 40.0% | |
| GAGTTGAACTGATGTTTGAG+GGG | + | chr5.2:67733809-67733828 | MS.gene55340:intron | 40.0% | |
| GGCTATAGAGCTATAATCGT+AGG | + | chr5.2:67734311-67734330 | MS.gene55340:intron | 40.0% | |
| GGTGCTTTATAACTGTTTCC+AGG | + | chr5.2:67735540-67735559 | MS.gene55340:intron | 40.0% | |
| GTATTCTATACCAAACCAGG+TGG | + | chr5.2:67732947-67732966 | MS.gene55340:intron | 40.0% | |
| TAAAACAAGCTCACTTGAGC+TGG | + | chr5.2:67733854-67733873 | MS.gene55340:intron | 40.0% | |
| TAAACACAATCCACCTGGTT+TGG | - | chr5.2:67732960-67732979 | None:intergenic | 40.0% | |
| TATGTGCGTGTTTGGGTAAA+TGG | - | chr5.2:67733374-67733393 | None:intergenic | 40.0% | |
| TCATCCCTATTAAGCAACTG+CGG | + | chr5.2:67735623-67735642 | MS.gene55340:CDS | 40.0% | |
| TGAATCGATGGCAAGTGTAT+TGG | + | chr5.2:67733477-67733496 | MS.gene55340:intron | 40.0% | |
| TGTATTCCTCTCAAGGTCTT+AGG | - | chr5.2:67735004-67735023 | None:intergenic | 40.0% | |
| ! | AAGAGACTCTGCTTCAAGTT+TGG | - | chr5.2:67734026-67734045 | None:intergenic | 40.0% |
| ! | ATTCAAGTTATCGAGAGGCT+AGG | - | chr5.2:67733462-67733481 | None:intergenic | 40.0% |
| ! | ATTTTCACATTTGGACGCTC+TGG | - | chr5.2:67733785-67733804 | None:intergenic | 40.0% |
| ! | CTGAGTTGAACTGATGTTTG+AGG | + | chr5.2:67733807-67733826 | MS.gene55340:intron | 40.0% |
| ! | CTTACTTTGTCTGGTTTGTC+AGG | - | chr5.2:67735467-67735486 | None:intergenic | 40.0% |
| ! | TACCACTCAACCGTTTTATC+AGG | + | chr5.2:67734403-67734422 | MS.gene55340:CDS | 40.0% |
| ! | TTATAGCTCTATAGCCTGCA+CGG | - | chr5.2:67734307-67734326 | None:intergenic | 40.0% |
| ! | TTCAAGTTATCGAGAGGCTA+GGG | - | chr5.2:67733461-67733480 | None:intergenic | 40.0% |
| ! | TTCTATGGAATGGATTCAGC+TGG | + | chr5.2:67735595-67735614 | MS.gene55340:CDS | 40.0% |
| !! | CATCGATTCAAGTTATCGAG+AGG | - | chr5.2:67733467-67733486 | None:intergenic | 40.0% |
| !! | TCTGGTATTGGAGCATTGAA+TGG | + | chr5.2:67733546-67733565 | MS.gene55340:intron | 40.0% |
| ATCGAACCTAAGACCTTGAG+AGG | + | chr5.2:67734995-67735014 | MS.gene55340:intron | 45.0% | |
| CACAATATGTCTTCCGCTTG+GGG | + | chr5.2:67734080-67734099 | MS.gene55340:CDS | 45.0% | |
| CATCCCTATTAAGCAACTGC+GGG | + | chr5.2:67735624-67735643 | MS.gene55340:CDS | 45.0% | |
| CTCTGCAACTGCAAAAGAGA+AGG | - | chr5.2:67735429-67735448 | None:intergenic | 45.0% | |
| CTGGATTACTAAGCCCTGTT+TGG | + | chr5.2:67734836-67734855 | MS.gene55340:intron | 45.0% | |
| CTTGAGAGGAATACAGTCCA+AGG | + | chr5.2:67735009-67735028 | MS.gene55340:intron | 45.0% | |
| CTTGGACTGTATTCCTCTCA+AGG | - | chr5.2:67735011-67735030 | None:intergenic | 45.0% | |
| GCACAATATGTCTTCCGCTT+GGG | + | chr5.2:67734079-67734098 | MS.gene55340:CDS | 45.0% | |
| GCTGCGAAACAAACTTACTG+AGG | + | chr5.2:67732894-67732913 | MS.gene55340:CDS | 45.0% | |
| GTGCGTGTTTGGTTATGCAT+TGG | + | chr5.2:67733751-67733770 | MS.gene55340:intron | 45.0% | |
| TACTGAACCAGATCTACTGG+TGG | + | chr5.2:67734801-67734820 | MS.gene55340:CDS | 45.0% | |
| TCTCCCGCAGTTGCTTAATA+GGG | - | chr5.2:67735630-67735649 | None:intergenic | 45.0% | |
| TCTGGTAAACACAATCCACC+TGG | - | chr5.2:67732965-67732984 | None:intergenic | 45.0% | |
| TGAACTGATGTTTGAGGGGT+TGG | + | chr5.2:67733813-67733832 | MS.gene55340:intron | 45.0% | |
| TGCACAATATGTCTTCCGCT+TGG | + | chr5.2:67734078-67734097 | MS.gene55340:CDS | 45.0% | |
| TGCCTGATGATCTATTCTGC+AGG | - | chr5.2:67734578-67734597 | None:intergenic | 45.0% | |
| TGCGTGTTTGGGTAAATGGT+GGG | - | chr5.2:67733370-67733389 | None:intergenic | 45.0% | |
| TGCTGCATCAGCTAAAGCTT+TGG | + | chr5.2:67734045-67734064 | MS.gene55340:CDS | 45.0% | |
| TTCTCCCGCAGTTGCTTAAT+AGG | - | chr5.2:67735631-67735650 | None:intergenic | 45.0% | |
| ! | ATTCTCCCTGGTGCCAATTT+CGG | - | chr5.2:67734977-67734996 | None:intergenic | 45.0% |
| ! | CTTCTCTTTTGCAGTTGCAG+AGG | + | chr5.2:67735427-67735446 | MS.gene55340:intron | 45.0% |
| ! | TCGATGGCAAGTGTATTGGT+CGG | + | chr5.2:67733481-67733500 | MS.gene55340:intron | 45.0% |
| !! | AACAGTTTGACTTGGGACCT+TGG | - | chr5.2:67735029-67735048 | None:intergenic | 45.0% |
| AGGGGTGATCAAATCTTCCC+TGG | - | chr5.2:67735561-67735580 | None:intergenic | 50.0% | |
| CACCAAGTGACGAAGATGGA+GGG | + | chr5.2:67735686-67735705 | MS.gene55340:CDS | 50.0% | |
| CCAAACTAGCCCACCGAAAT+TGG | + | chr5.2:67734961-67734980 | MS.gene55340:intron | 50.0% | |
| CCAGATCTACTGGTGGCATA+TGG | + | chr5.2:67734808-67734827 | MS.gene55340:CDS | 50.0% | |
| CCATATGCCACCAGTAGATC+TGG | - | chr5.2:67734811-67734830 | None:intergenic | 50.0% | |
| CTCCATCTTCGTCACTTGGT+GGG | - | chr5.2:67735687-67735706 | None:intergenic | 50.0% | |
| CTGGTGGCATATGGTAAAGC+TGG | + | chr5.2:67734817-67734836 | MS.gene55340:intron | 50.0% | |
| GAGAGGCTAGGGTCATACAA+GGG | - | chr5.2:67733450-67733469 | None:intergenic | 50.0% | |
| GCGTACTGAACCAGATCTAC+TGG | + | chr5.2:67734798-67734817 | MS.gene55340:CDS | 50.0% | |
| GCGTGTTTGGGTAAATGGTG+GGG | - | chr5.2:67733369-67733388 | None:intergenic | 50.0% | |
| GCTTTACTTTCTGCCCCAAG+CGG | - | chr5.2:67734096-67734115 | None:intergenic | 50.0% | |
| GTCTTAGGTTCGATTCTCCC+TGG | - | chr5.2:67734989-67735008 | None:intergenic | 50.0% | |
| GTGCGTGTTTGGGTAAATGG+TGG | - | chr5.2:67733371-67733390 | None:intergenic | 50.0% | |
| GTTTGCGTTCCTGGTTTCTG+TGG | + | chr5.2:67735339-67735358 | MS.gene55340:intron | 50.0% | |
| TTCCCTCCATCTTCGTCACT+TGG | - | chr5.2:67735691-67735710 | None:intergenic | 50.0% | |
| ! | TCGTCACTTGGTGGGTCAAA+GGG | - | chr5.2:67735679-67735698 | None:intergenic | 50.0% |
| ! | TTCGTCACTTGGTGGGTCAA+AGG | - | chr5.2:67735680-67735699 | None:intergenic | 50.0% |
| !! | CCAATTTCGGTGGGCTAGTT+TGG | - | chr5.2:67734964-67734983 | None:intergenic | 50.0% |
| !! | GTGGGTCAAAGGGTATTTCG+TGG | - | chr5.2:67735669-67735688 | None:intergenic | 50.0% |
| !! | TCAAAGGGTATTTCGTGGCG+CGG | - | chr5.2:67735664-67735683 | None:intergenic | 50.0% |
| ATAGCCTGCACGGTACATCG+AGG | - | chr5.2:67734297-67734316 | None:intergenic | 55.0% | |
| CCACCAAGTGACGAAGATGG+AGG | + | chr5.2:67735685-67735704 | MS.gene55340:CDS | 55.0% | |
| CCTCCATCTTCGTCACTTGG+TGG | - | chr5.2:67735688-67735707 | None:intergenic | 55.0% | |
| CGAGAGGCTAGGGTCATACA+AGG | - | chr5.2:67733451-67733470 | None:intergenic | 55.0% | |
| GACCCACCAAGTGACGAAGA+TGG | + | chr5.2:67735682-67735701 | MS.gene55340:CDS | 55.0% | |
| GATTCCTCGATGTACCGTGC+AGG | + | chr5.2:67734290-67734309 | MS.gene55340:intron | 55.0% | |
| ! | TCCCTGGTGCCAATTTCGGT+GGG | - | chr5.2:67734973-67734992 | None:intergenic | 55.0% |
| AGCCCACCGAAATTGGCACC+AGG | + | chr5.2:67734968-67734987 | MS.gene55340:intron | 60.0% | |
| GCCCACCGAAATTGGCACCA+GGG | + | chr5.2:67734969-67734988 | MS.gene55340:intron | 60.0% | |
| ! | CTCCCTGGTGCCAATTTCGG+TGG | - | chr5.2:67734974-67734993 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 67732856 | 67735717 | 67732856 | ID=MS.gene55340 |
| chr5.2 | mRNA | 67732856 | 67735717 | 67732856 | ID=MS.gene55340.t1;Parent=MS.gene55340 |
| chr5.2 | exon | 67732856 | 67732915 | 67732856 | ID=MS.gene55340.t1.exon1;Parent=MS.gene55340.t1 |
| chr5.2 | CDS | 67732856 | 67732915 | 67732856 | ID=cds.MS.gene55340.t1;Parent=MS.gene55340.t1 |
| chr5.2 | exon | 67733604 | 67733698 | 67733604 | ID=MS.gene55340.t1.exon2;Parent=MS.gene55340.t1 |
| chr5.2 | CDS | 67733604 | 67733698 | 67733604 | ID=cds.MS.gene55340.t1;Parent=MS.gene55340.t1 |
| chr5.2 | exon | 67733955 | 67734127 | 67733955 | ID=MS.gene55340.t1.exon3;Parent=MS.gene55340.t1 |
| chr5.2 | CDS | 67733955 | 67734127 | 67733955 | ID=cds.MS.gene55340.t1;Parent=MS.gene55340.t1 |
| chr5.2 | exon | 67734312 | 67734424 | 67734312 | ID=MS.gene55340.t1.exon4;Parent=MS.gene55340.t1 |
| chr5.2 | CDS | 67734312 | 67734424 | 67734312 | ID=cds.MS.gene55340.t1;Parent=MS.gene55340.t1 |
| chr5.2 | exon | 67734784 | 67734829 | 67734784 | ID=MS.gene55340.t1.exon5;Parent=MS.gene55340.t1 |
| chr5.2 | CDS | 67734784 | 67734829 | 67734784 | ID=cds.MS.gene55340.t1;Parent=MS.gene55340.t1 |
| chr5.2 | exon | 67735441 | 67735481 | 67735441 | ID=MS.gene55340.t1.exon6;Parent=MS.gene55340.t1 |
| chr5.2 | CDS | 67735441 | 67735481 | 67735441 | ID=cds.MS.gene55340.t1;Parent=MS.gene55340.t1 |
| chr5.2 | exon | 67735562 | 67735717 | 67735562 | ID=MS.gene55340.t1.exon7;Parent=MS.gene55340.t1 |
| chr5.2 | CDS | 67735562 | 67735717 | 67735562 | ID=cds.MS.gene55340.t1;Parent=MS.gene55340.t1 |
| Gene Sequence |
| Protein sequence |
