Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61064.t1 | XP_013446022.1 | 95.4 | 218 | 10 | 0 | 1 | 218 | 1 | 218 | 2.00E-114 | 421.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61064.t1 | Q7MG84 | 30.2 | 182 | 108 | 6 | 13 | 194 | 6 | 168 | 1.6e-11 | 71.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61064.t1 | I3SM79 | 95.4 | 218 | 10 | 0 | 1 | 218 | 1 | 218 | 1.4e-114 | 421.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene61064 | 0.805295 | 1.43E-49 | -1.69E-46 |
| MS.gene04918 | MS.gene61064 | 0.820275 | 7.48E-53 | -1.69E-46 |
| MS.gene04920 | MS.gene61064 | 0.820246 | 7.59E-53 | -1.69E-46 |
| MS.gene049254 | MS.gene61064 | 0.804937 | 1.70E-49 | -1.69E-46 |
| MS.gene049283 | MS.gene61064 | 0.854763 | 9.91E-62 | -1.69E-46 |
| MS.gene049368 | MS.gene61064 | 0.80734 | 5.30E-50 | -1.69E-46 |
| MS.gene049499 | MS.gene61064 | 0.803609 | 3.21E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene61064 | 0.880853 | 3.90E-70 | -1.69E-46 |
| MS.gene04998 | MS.gene61064 | 0.800515 | 1.39E-48 | -1.69E-46 |
| MS.gene050359 | MS.gene61064 | 0.833434 | 5.35E-56 | -1.69E-46 |
| MS.gene050414 | MS.gene61064 | 0.805047 | 1.61E-49 | -1.69E-46 |
| MS.gene050571 | MS.gene61064 | 0.837127 | 6.24E-57 | -1.69E-46 |
| MS.gene050646 | MS.gene61064 | 0.839266 | 1.76E-57 | -1.69E-46 |
| MS.gene050654 | MS.gene61064 | 0.837869 | 4.03E-57 | -1.69E-46 |
| MS.gene050941 | MS.gene61064 | 0.823511 | 1.33E-53 | -1.69E-46 |
| MS.gene051003 | MS.gene61064 | 0.825611 | 4.26E-54 | -1.69E-46 |
| MS.gene051184 | MS.gene61064 | 0.813314 | 2.73E-51 | -1.69E-46 |
| MS.gene051234 | MS.gene61064 | 0.800967 | 1.12E-48 | -1.69E-46 |
| MS.gene051343 | MS.gene61064 | 0.816231 | 6.15E-52 | -1.69E-46 |
| MS.gene051831 | MS.gene61064 | 0.838999 | 2.06E-57 | -1.69E-46 |
| MS.gene051848 | MS.gene61064 | -0.802253 | 6.12E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene61064 | 0.830307 | 3.16E-55 | -1.69E-46 |
| MS.gene052118 | MS.gene61064 | 0.826326 | 2.88E-54 | -1.69E-46 |
| MS.gene052307 | MS.gene61064 | 0.819886 | 9.18E-53 | -1.69E-46 |
| MS.gene052342 | MS.gene61064 | 0.803341 | 3.65E-49 | -1.69E-46 |
| MS.gene052463 | MS.gene61064 | 0.815208 | 1.04E-51 | -1.69E-46 |
| MS.gene052533 | MS.gene61064 | 0.816753 | 4.70E-52 | -1.69E-46 |
| MS.gene052609 | MS.gene61064 | 0.813085 | 3.06E-51 | -1.69E-46 |
| MS.gene052932 | MS.gene61064 | 0.801459 | 8.91E-49 | -1.69E-46 |
| MS.gene053058 | MS.gene61064 | 0.802112 | 6.55E-49 | -1.69E-46 |
| MS.gene053094 | MS.gene61064 | 0.804482 | 2.11E-49 | -1.69E-46 |
| MS.gene053575 | MS.gene61064 | 0.809006 | 2.34E-50 | -1.69E-46 |
| MS.gene053726 | MS.gene61064 | 0.819916 | 9.03E-53 | -1.69E-46 |
| MS.gene053931 | MS.gene61064 | 0.814761 | 1.31E-51 | -1.69E-46 |
| MS.gene053963 | MS.gene61064 | 0.807307 | 5.39E-50 | -1.69E-46 |
| MS.gene054479 | MS.gene61064 | 0.805035 | 1.62E-49 | -1.69E-46 |
| MS.gene05458 | MS.gene61064 | 0.801884 | 7.29E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene61064 | 0.877196 | 7.63E-69 | -1.69E-46 |
| MS.gene054893 | MS.gene61064 | 0.874387 | 7.03E-68 | -1.69E-46 |
| MS.gene055147 | MS.gene61064 | 0.826883 | 2.12E-54 | -1.69E-46 |
| MS.gene055148 | MS.gene61064 | 0.809511 | 1.83E-50 | -1.69E-46 |
| MS.gene055150 | MS.gene61064 | 0.830362 | 3.07E-55 | -1.69E-46 |
| MS.gene055222 | MS.gene61064 | 0.817086 | 3.96E-52 | -1.69E-46 |
| MS.gene055226 | MS.gene61064 | 0.801881 | 7.30E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene61064 | 0.848591 | 5.56E-60 | -1.69E-46 |
| MS.gene055724 | MS.gene61064 | 0.815103 | 1.10E-51 | -1.69E-46 |
| MS.gene055864 | MS.gene61064 | 0.809671 | 1.69E-50 | -1.69E-46 |
| MS.gene056045 | MS.gene61064 | 0.804595 | 2.00E-49 | -1.69E-46 |
| MS.gene056071 | MS.gene61064 | 0.80329 | 3.74E-49 | -1.69E-46 |
| MS.gene056181 | MS.gene61064 | 0.82325 | 1.53E-53 | -1.69E-46 |
| MS.gene05624 | MS.gene61064 | 0.80676 | 7.03E-50 | -1.69E-46 |
| MS.gene056699 | MS.gene61064 | 0.870184 | 1.77E-66 | -1.69E-46 |
| MS.gene056787 | MS.gene61064 | 0.800289 | 1.55E-48 | -1.69E-46 |
| MS.gene056831 | MS.gene61064 | 0.825131 | 5.54E-54 | -1.69E-46 |
| MS.gene05686 | MS.gene61064 | 0.84705 | 1.48E-59 | -1.69E-46 |
| MS.gene057034 | MS.gene61064 | 0.838207 | 3.30E-57 | -1.69E-46 |
| MS.gene057102 | MS.gene61064 | 0.816002 | 6.92E-52 | -1.69E-46 |
| MS.gene057155 | MS.gene61064 | 0.80956 | 1.78E-50 | -1.69E-46 |
| MS.gene057174 | MS.gene61064 | 0.810214 | 1.29E-50 | -1.69E-46 |
| MS.gene057208 | MS.gene61064 | 0.81913 | 1.36E-52 | -1.69E-46 |
| MS.gene057622 | MS.gene61064 | 0.835939 | 1.25E-56 | -1.69E-46 |
| MS.gene058010 | MS.gene61064 | 0.803778 | 2.96E-49 | -1.69E-46 |
| MS.gene058095 | MS.gene61064 | 0.85083 | 1.32E-60 | -1.69E-46 |
| MS.gene058159 | MS.gene61064 | 0.807748 | 4.34E-50 | -1.69E-46 |
| MS.gene058292 | MS.gene61064 | 0.808308 | 3.30E-50 | -1.69E-46 |
| MS.gene058429 | MS.gene61064 | 0.821652 | 3.60E-53 | -1.69E-46 |
| MS.gene058592 | MS.gene61064 | 0.841739 | 3.96E-58 | -1.69E-46 |
| MS.gene058781 | MS.gene61064 | 0.830194 | 3.37E-55 | -1.69E-46 |
| MS.gene058783 | MS.gene61064 | 0.802132 | 6.48E-49 | -1.69E-46 |
| MS.gene05878 | MS.gene61064 | 0.833513 | 5.11E-56 | -1.69E-46 |
| MS.gene059146 | MS.gene61064 | 0.828601 | 8.21E-55 | -1.69E-46 |
| MS.gene059170 | MS.gene61064 | 0.822722 | 2.03E-53 | -1.69E-46 |
| MS.gene05952 | MS.gene61064 | 0.859989 | 2.82E-63 | -1.69E-46 |
| MS.gene05956 | MS.gene61064 | 0.819172 | 1.34E-52 | -1.69E-46 |
| MS.gene05985 | MS.gene61064 | -0.838969 | 2.10E-57 | -1.69E-46 |
| MS.gene059901 | MS.gene61064 | -0.80508 | 1.59E-49 | -1.69E-46 |
| MS.gene059965 | MS.gene61064 | 0.820115 | 8.14E-53 | -1.69E-46 |
| MS.gene060259 | MS.gene61064 | 0.837146 | 6.17E-57 | -1.69E-46 |
| MS.gene060522 | MS.gene61064 | 0.826694 | 2.36E-54 | -1.69E-46 |
| MS.gene060777 | MS.gene61064 | 0.816388 | 5.67E-52 | -1.69E-46 |
| MS.gene060840 | MS.gene61064 | 0.810697 | 1.01E-50 | -1.69E-46 |
| MS.gene060932 | MS.gene61064 | 0.838574 | 2.65E-57 | -1.69E-46 |
| MS.gene060933 | MS.gene61064 | 0.831874 | 1.30E-55 | -1.69E-46 |
| MS.gene060935 | MS.gene61064 | 0.841071 | 5.93E-58 | -1.69E-46 |
| MS.gene060937 | MS.gene61064 | 0.850952 | 1.22E-60 | -1.69E-46 |
| MS.gene061100 | MS.gene61064 | 0.837737 | 4.36E-57 | -1.69E-46 |
| MS.gene061160 | MS.gene61064 | 0.802054 | 6.73E-49 | -1.69E-46 |
| MS.gene061188 | MS.gene61064 | 0.826377 | 2.80E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61064.t1 | MTR_8g065050 | 95.413 | 218 | 10 | 0 | 1 | 218 | 1 | 218 | 1.37e-157 | 435 |
| MS.gene61064.t1 | MTR_1g084740 | 67.273 | 220 | 67 | 4 | 1 | 216 | 1 | 219 | 8.24e-105 | 301 |
| MS.gene61064.t1 | MTR_1g084740 | 49.091 | 220 | 56 | 5 | 1 | 216 | 1 | 168 | 1.00e-62 | 193 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61064.t1 | AT1G23440 | 69.725 | 218 | 65 | 1 | 1 | 218 | 1 | 217 | 9.48e-113 | 322 |
| MS.gene61064.t1 | AT1G23440 | 69.725 | 218 | 65 | 1 | 1 | 218 | 1 | 217 | 9.48e-113 | 322 |
| MS.gene61064.t1 | AT1G56700 | 62.100 | 219 | 81 | 2 | 1 | 218 | 1 | 218 | 7.33e-99 | 286 |
| MS.gene61064.t1 | AT1G56700 | 62.100 | 219 | 81 | 2 | 1 | 218 | 1 | 218 | 7.33e-99 | 286 |
| MS.gene61064.t1 | AT1G56700 | 62.100 | 219 | 81 | 2 | 1 | 218 | 1 | 218 | 7.33e-99 | 286 |
| MS.gene61064.t1 | AT1G56700 | 60.526 | 190 | 73 | 2 | 30 | 218 | 1 | 189 | 7.89e-82 | 242 |
| MS.gene61064.t1 | AT1G23440 | 62.222 | 90 | 34 | 0 | 1 | 90 | 1 | 90 | 5.10e-35 | 120 |
Find 53 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAATCTCTGTAGGGTTTAT+TGG | 0.189118 | 8.1:-38494827 | None:intergenic |
| AATATTGAAATCCTTGAAAA+AGG | 0.209948 | 8.1:+38497424 | MS.gene61064:CDS |
| AAAATTACAATTCATGTAAC+TGG | 0.219675 | 8.1:+38494782 | MS.gene61064:CDS |
| GAGATTTACATCCTCTCTTT+TGG | 0.242916 | 8.1:+38497601 | MS.gene61064:CDS |
| TTCCGCTGTTCTGATGAATT+AGG | 0.270479 | 8.1:+38496194 | MS.gene61064:CDS |
| AGAGTAATGCAAATGTTGTT+TGG | 0.313563 | 8.1:+38494999 | MS.gene61064:CDS |
| CCTCCATCCTCAAGGACTAT+TGG | 0.368174 | 8.1:-38496375 | None:intergenic |
| CTTCCAGTTGGTGTTACTCT+TGG | 0.368291 | 8.1:+38494887 | MS.gene61064:CDS |
| GAGTAATGCAAATGTTGTTT+GGG | 0.392945 | 8.1:+38495000 | MS.gene61064:CDS |
| ATGTGTATTACCACTCTCTT+CGG | 0.421496 | 8.1:+38497501 | MS.gene61064:CDS |
| ATTTATGCTTCAGCTTCACT+TGG | 0.429836 | 8.1:+38496112 | MS.gene61064:intron |
| TTTATGCTTCAGCTTCACTT+GGG | 0.439902 | 8.1:+38496113 | MS.gene61064:intron |
| CTTCCAAGAGTAACACCAAC+TGG | 0.451339 | 8.1:-38494890 | None:intergenic |
| ACTGGGTTTAAGAAGTTTCA+AGG | 0.460584 | 8.1:+38494800 | MS.gene61064:CDS |
| AAGGTTTGCCATTGAGCGGT+TGG | 0.461153 | 8.1:+38496154 | MS.gene61064:CDS |
| TTATTAACAATAATCTCTGT+AGG | 0.465678 | 8.1:-38494836 | None:intergenic |
| GATTTCAATATTGCATCAAC+GGG | 0.475315 | 8.1:-38497413 | None:intergenic |
| TGCACTATTCTTGACGTGGC+TGG | 0.492051 | 8.1:+38494914 | MS.gene61064:CDS |
| GGATTTCAATATTGCATCAA+CGG | 0.495159 | 8.1:-38497414 | None:intergenic |
| AGGGATTATGTTGAAAAGAA+AGG | 0.499009 | 8.1:+38494863 | MS.gene61064:CDS |
| GGAATCTGTTGTGTCGAAAA+CGG | 0.508223 | 8.1:+38494970 | MS.gene61064:CDS |
| TTATGCTTCAGCTTCACTTG+GGG | 0.520510 | 8.1:+38496114 | MS.gene61064:intron |
| TTTCGACACAACAGATTCCA+TGG | 0.522218 | 8.1:-38494966 | None:intergenic |
| GTTTGCCATTGAGCGGTTGG+CGG | 0.523269 | 8.1:+38496157 | MS.gene61064:CDS |
| TCTTCGGTTCGCAGAACAGA+AGG | 0.529048 | 8.1:+38497517 | MS.gene61064:CDS |
| AATTCAGAAATGGGATCTGA+AGG | 0.532059 | 8.1:+38494752 | None:intergenic |
| ATTCTTGACGTGGCTGGTGA+TGG | 0.533255 | 8.1:+38494920 | MS.gene61064:CDS |
| CTGCAAGGTTTGCCATTGAG+CGG | 0.540890 | 8.1:+38496150 | MS.gene61064:CDS |
| AGATTATTGTTAATAATCTG+AGG | 0.547702 | 8.1:+38494843 | MS.gene61064:CDS |
| TATTAACAATAATCTCTGTA+GGG | 0.553359 | 8.1:-38494835 | None:intergenic |
| AAATTACAATTCATGTAACT+GGG | 0.560230 | 8.1:+38494783 | MS.gene61064:CDS |
| GAGAAATTCCTCCATCCTCA+AGG | 0.563765 | 8.1:-38496383 | None:intergenic |
| ATTCACCGCCAACCGCTCAA+TGG | 0.566870 | 8.1:-38496162 | None:intergenic |
| TATGCTTCAGCTTCACTTGG+GGG | 0.574889 | 8.1:+38496115 | MS.gene61064:intron |
| TCCTCAGCTTTATCAGACCA+TGG | 0.578488 | 8.1:+38494949 | MS.gene61064:CDS |
| TCTCATCTGAGTTTCTTCAT+CGG | 0.580439 | 8.1:-38497582 | None:intergenic |
| GATTATTGTTAATAATCTGA+GGG | 0.580790 | 8.1:+38494844 | MS.gene61064:CDS |
| GAAAAGAAAGGTCTTCCAGT+TGG | 0.590107 | 8.1:+38494875 | MS.gene61064:CDS |
| GTACCAATAGTCCTTGAGGA+TGG | 0.605270 | 8.1:+38496372 | MS.gene61064:CDS |
| TTATTAACATGCAGAAGCAA+TGG | 0.607143 | 8.1:-38497627 | None:intergenic |
| GCAAGTACCAATAGTCCTTG+AGG | 0.613468 | 8.1:+38496368 | MS.gene61064:intron |
| CCAATAGTCCTTGAGGATGG+AGG | 0.618477 | 8.1:+38496375 | MS.gene61064:CDS |
| AGGAATTTCTCGAACAAGAG+AGG | 0.621029 | 8.1:+38496395 | MS.gene61064:CDS |
| GGGTGAACAGTGGAGCTGCA+AGG | 0.626140 | 8.1:+38496135 | MS.gene61064:CDS |
| ATTCAGAAATGGGATCTGAA+GGG | 0.630200 | 8.1:+38494753 | None:intergenic |
| CTTCGGTTCGCAGAACAGAA+GGG | 0.630794 | 8.1:+38497518 | MS.gene61064:CDS |
| GCTGTTCTGATGAATTAGGA+TGG | 0.630988 | 8.1:+38496198 | MS.gene61064:CDS |
| AGCAATGGCCTCCAAAAGAG+AGG | 0.638029 | 8.1:-38497612 | None:intergenic |
| AAGTTGCACTATTCTTGACG+TGG | 0.643245 | 8.1:+38494910 | MS.gene61064:CDS |
| TCCATGGTCTGATAAAGCTG+AGG | 0.663058 | 8.1:-38494950 | None:intergenic |
| ATCCTAATTCATCAGAACAG+CGG | 0.674516 | 8.1:-38496196 | None:intergenic |
| GTGATGATATCAGTCGACGC+AGG | 0.691901 | 8.1:+38497461 | MS.gene61064:CDS |
| GTTCTGCGAACCGAAGAGAG+TGG | 0.713903 | 8.1:-38497511 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAACATTTTTATTTATC+CGG | + | chr8.1:38496779-38496798 | MS.gene61064:intron | 10.0% |
| !!! | ATTTATTACTACAATTTTAA+AGG | - | chr8.1:38495416-38495435 | None:intergenic | 10.0% |
| !!! | TTATTTTTTATAGATGAAAT+TGG | + | chr8.1:38496251-38496270 | MS.gene61064:intron | 10.0% |
| !! | AATAAATAGCATATAAGTAT+AGG | + | chr8.1:38495429-38495448 | MS.gene61064:intron | 15.0% |
| !! | ATTGAATTGTATTAGAAATT+TGG | + | chr8.1:38495548-38495567 | MS.gene61064:intron | 15.0% |
| !!! | TTCATTTTGTTTAATGTATA+GGG | + | chr8.1:38496512-38496531 | MS.gene61064:intron | 15.0% |
| !!! | TTTATTTTGTCTTTTGTTAT+AGG | + | chr8.1:38495166-38495185 | MS.gene61064:intron | 15.0% |
| !!! | TTTCATTTTGTTTAATGTAT+AGG | + | chr8.1:38496511-38496530 | MS.gene61064:intron | 15.0% |
| !! | AAAATTACAATTCATGTAAC+TGG | + | chr8.1:38494782-38494801 | MS.gene61064:CDS | 20.0% |
| !! | AAACAAAATAACACTCAATA+AGG | - | chr8.1:38495710-38495729 | None:intergenic | 20.0% |
| !! | AAATTACAATTCATGTAACT+GGG | + | chr8.1:38494783-38494802 | MS.gene61064:CDS | 20.0% |
| !! | AACGTTAATGTTGTATTAAT+TGG | + | chr8.1:38496642-38496661 | MS.gene61064:intron | 20.0% |
| !! | AATATTGAAATCCTTGAAAA+AGG | + | chr8.1:38497424-38497443 | MS.gene61064:CDS | 20.0% |
| !! | AGATTATTGTTAATAATCTG+AGG | + | chr8.1:38494843-38494862 | MS.gene61064:CDS | 20.0% |
| !! | ATATTGAAATCCTTGAAAAA+GGG | + | chr8.1:38497425-38497444 | MS.gene61064:CDS | 20.0% |
| !! | CTTATTAAGGATTCAAAAAA+TGG | + | chr8.1:38496975-38496994 | MS.gene61064:intron | 20.0% |
| !! | GATTATATAATCATATTTCC+TGG | + | chr8.1:38496060-38496079 | MS.gene61064:intron | 20.0% |
| !! | GATTATTGTTAATAATCTGA+GGG | + | chr8.1:38494844-38494863 | MS.gene61064:CDS | 20.0% |
| !! | TAAAAATCTCATAATTAACG+AGG | - | chr8.1:38495765-38495784 | None:intergenic | 20.0% |
| !! | TATTAACAATAATCTCTGTA+GGG | - | chr8.1:38494838-38494857 | None:intergenic | 20.0% |
| !! | TTATTAACAATAATCTCTGT+AGG | - | chr8.1:38494839-38494858 | None:intergenic | 20.0% |
| !! | TTCTATTATCAAAATAATCC+AGG | - | chr8.1:38496081-38496100 | None:intergenic | 20.0% |
| !!! | ACATGAATTGTAATTTTCTT+TGG | - | chr8.1:38494779-38494798 | None:intergenic | 20.0% |
| !!! | TACGGTAGAAATTTTATATT+GGG | - | chr8.1:38497068-38497087 | None:intergenic | 20.0% |
| !!! | TTACGGTAGAAATTTTATAT+TGG | - | chr8.1:38497069-38497088 | None:intergenic | 20.0% |
| ! | AATGTTGTATTAATTGGTTG+AGG | + | chr8.1:38496648-38496667 | MS.gene61064:intron | 25.0% |
| ! | ACAAAAAATAGTAGCAAGTT+AGG | - | chr8.1:38497379-38497398 | None:intergenic | 25.0% |
| ! | AGAGAAAGAACAAATCAATA+AGG | + | chr8.1:38496750-38496769 | MS.gene61064:intron | 25.0% |
| ! | ATAGCATAAACAATTGTCAT+AGG | - | chr8.1:38495348-38495367 | None:intergenic | 25.0% |
| ! | ATGTTGTAAAATAGCAGTTA+TGG | - | chr8.1:38495978-38495997 | None:intergenic | 25.0% |
| ! | ATGTTGTATTAATTGGTTGA+GGG | + | chr8.1:38496649-38496668 | MS.gene61064:intron | 25.0% |
| ! | CATTTGAATCTTTAAATCGA+TGG | + | chr8.1:38497253-38497272 | MS.gene61064:intron | 25.0% |
| ! | GGCACTTGATAAAAAATTTA+CGG | - | chr8.1:38497086-38497105 | None:intergenic | 25.0% |
| ! | GTTGAAAACAGCTTATAAAT+TGG | - | chr8.1:38495094-38495113 | None:intergenic | 25.0% |
| ! | TTAAAGATTCAAATGACTCA+TGG | - | chr8.1:38497248-38497267 | None:intergenic | 25.0% |
| !! | ATGAGATTTTTATAACTCTG+TGG | + | chr8.1:38495773-38495792 | MS.gene61064:intron | 25.0% |
| !! | TGAGATTTTTATAACTCTGT+GGG | + | chr8.1:38495774-38495793 | MS.gene61064:intron | 25.0% |
| !!! | ACTGCTATTTTACAACATTA+TGG | + | chr8.1:38495980-38495999 | MS.gene61064:intron | 25.0% |
| !!! | ATAATCTTTTCCCTTTTTCA+AGG | - | chr8.1:38497438-38497457 | None:intergenic | 25.0% |
| !!! | CTGCTATTTTACAACATTAT+GGG | + | chr8.1:38495981-38496000 | MS.gene61064:intron | 25.0% |
| AAAATCCTCAGGTCATAAAT+TGG | + | chr8.1:38496594-38496613 | MS.gene61064:intron | 30.0% | |
| AACCTTGGTTCAAAAGTAAA+AGG | + | chr8.1:38496838-38496857 | MS.gene61064:intron | 30.0% | |
| AACTCAGATAATGCAAAACA+TGG | - | chr8.1:38496316-38496335 | None:intergenic | 30.0% | |
| AGAGTAATGCAAATGTTGTT+TGG | + | chr8.1:38494999-38495018 | MS.gene61064:CDS | 30.0% | |
| AGGGATTATGTTGAAAAGAA+AGG | + | chr8.1:38494863-38494882 | MS.gene61064:CDS | 30.0% | |
| ATAAAGCTTACAAAATCCTC+AGG | + | chr8.1:38496583-38496602 | MS.gene61064:intron | 30.0% | |
| ATAATCTCTGTAGGGTTTAT+TGG | - | chr8.1:38494830-38494849 | None:intergenic | 30.0% | |
| GAAATTGGAAAAAAGCTACA+AGG | + | chr8.1:38496266-38496285 | MS.gene61064:intron | 30.0% | |
| GATTTCAATATTGCATCAAC+GGG | - | chr8.1:38497416-38497435 | None:intergenic | 30.0% | |
| GGATTTCAATATTGCATCAA+CGG | - | chr8.1:38497417-38497436 | None:intergenic | 30.0% | |
| GTACTATCGTATAATCTGTT+TGG | - | chr8.1:38495394-38495413 | None:intergenic | 30.0% | |
| TACAAAATGTTGTCAAACAG+TGG | - | chr8.1:38495887-38495906 | None:intergenic | 30.0% | |
| TCTCTAGTGTCAATTTAGAT+GGG | - | chr8.1:38495246-38495265 | None:intergenic | 30.0% | |
| TGTCAATTGCATAACAGTAA+TGG | - | chr8.1:38495687-38495706 | None:intergenic | 30.0% | |
| ! | CATGTTGGATTGCATTTTAT+AGG | + | chr8.1:38496461-38496480 | MS.gene61064:intron | 30.0% |
| ! | GAGTAATGCAAATGTTGTTT+GGG | + | chr8.1:38495000-38495019 | MS.gene61064:CDS | 30.0% |
| ! | TACTTGCTGAAAAGGAAAAT+TGG | - | chr8.1:38496355-38496374 | None:intergenic | 30.0% |
| ! | TATCATTTTCACCACATTTC+TGG | + | chr8.1:38495516-38495535 | MS.gene61064:intron | 30.0% |
| !! | ATAACGAGAGTACTTAGAAA+CGG | - | chr8.1:38495737-38495756 | None:intergenic | 30.0% |
| !! | ATCCTTTTACTTTTGAACCA+AGG | - | chr8.1:38496843-38496862 | None:intergenic | 30.0% |
| !! | ATTTGTTTCTACCAGAAATG+TGG | - | chr8.1:38495530-38495549 | None:intergenic | 30.0% |
| !!! | ATTTTTTATCAAGTGCCCTT+AGG | + | chr8.1:38497089-38497108 | MS.gene61064:intron | 30.0% |
| !!! | TCATCGGTTTTCGAAAATAA+GGG | - | chr8.1:38497569-38497588 | None:intergenic | 30.0% |
| !!! | TTCATCGGTTTTCGAAAATA+AGG | - | chr8.1:38497570-38497589 | None:intergenic | 30.0% |
| !!! | TTTTTTATCAAGTGCCCTTA+GGG | + | chr8.1:38497090-38497109 | MS.gene61064:intron | 30.0% |
| AAACCATACTGAACTTGCAA+AGG | + | chr8.1:38497287-38497306 | MS.gene61064:intron | 35.0% | |
| ACTATAGGACTGAAGTATAG+CGG | - | chr8.1:38495854-38495873 | None:intergenic | 35.0% | |
| ACTCAAAATCTACCGATCAT+TGG | - | chr8.1:38496010-38496029 | None:intergenic | 35.0% | |
| ACTCATGGTTTACTGATAAG+TGG | - | chr8.1:38497233-38497252 | None:intergenic | 35.0% | |
| ACTGGGTTTAAGAAGTTTCA+AGG | + | chr8.1:38494800-38494819 | MS.gene61064:CDS | 35.0% | |
| ATCCTAATTCATCAGAACAG+CGG | - | chr8.1:38496199-38496218 | None:intergenic | 35.0% | |
| ATCCTTAATAAGTGCCCTAA+AGG | - | chr8.1:38496967-38496986 | None:intergenic | 35.0% | |
| ATGTGTATTACCACTCTCTT+CGG | + | chr8.1:38497501-38497520 | MS.gene61064:CDS | 35.0% | |
| ATTCCTTTGCAAGTTCAGTA+TGG | - | chr8.1:38497293-38497312 | None:intergenic | 35.0% | |
| ATTTATGCTTCAGCTTCACT+TGG | + | chr8.1:38496112-38496131 | MS.gene61064:intron | 35.0% | |
| CAAAACCAATTTATGACCTG+AGG | - | chr8.1:38496602-38496621 | None:intergenic | 35.0% | |
| CAACCATACAAGTCTATAAC+CGG | - | chr8.1:38496801-38496820 | None:intergenic | 35.0% | |
| CACGTATCGCTAAACAATAA+TGG | + | chr8.1:38495913-38495932 | MS.gene61064:intron | 35.0% | |
| CATTATGGGTAACCAATGAT+CGG | + | chr8.1:38495995-38496014 | MS.gene61064:intron | 35.0% | |
| CCTAAGCTAGAACTATAGAA+GGG | - | chr8.1:38497131-38497150 | None:intergenic | 35.0% | |
| CTCATGGTTTACTGATAAGT+GGG | - | chr8.1:38497232-38497251 | None:intergenic | 35.0% | |
| CTCTCTAGTGTCAATTTAGA+TGG | - | chr8.1:38495247-38495266 | None:intergenic | 35.0% | |
| GAAGCTGAAGCATAAATTCA+AGG | - | chr8.1:38496109-38496128 | None:intergenic | 35.0% | |
| GTTATAGGGCTATAGTATAG+TGG | - | chr8.1:38495951-38495970 | None:intergenic | 35.0% | |
| TAGCAAGACCCATAATAGAA+AGG | - | chr8.1:38496937-38496956 | None:intergenic | 35.0% | |
| TATCCGGTTATAGACTTGTA+TGG | + | chr8.1:38496795-38496814 | MS.gene61064:intron | 35.0% | |
| TCCACGTTAGTCAGAAATAA+AGG | + | chr8.1:38496547-38496566 | MS.gene61064:intron | 35.0% | |
| TCTCATCTGAGTTTCTTCAT+CGG | - | chr8.1:38497585-38497604 | None:intergenic | 35.0% | |
| TGCTAGACATTGTAACACAT+CGG | + | chr8.1:38495629-38495648 | MS.gene61064:intron | 35.0% | |
| TTTATGCTTCAGCTTCACTT+GGG | + | chr8.1:38496113-38496132 | MS.gene61064:intron | 35.0% | |
| ! | ACTATTGGTACTTGCTGAAA+AGG | - | chr8.1:38496363-38496382 | None:intergenic | 35.0% |
| ! | AGCTACAAGGTTTTCTTGTA+TGG | + | chr8.1:38496279-38496298 | MS.gene61064:intron | 35.0% |
| ! | ATTTACATCCTCTCTTTTGG+AGG | + | chr8.1:38497604-38497623 | MS.gene61064:CDS | 35.0% |
| ! | GAGATTTACATCCTCTCTTT+TGG | + | chr8.1:38497601-38497620 | MS.gene61064:CDS | 35.0% |
| !! | ACGACTCGGTCTTAATATTA+TGG | + | chr8.1:38497162-38497181 | MS.gene61064:intron | 35.0% |
| !! | CCTTCTATAGTTCTAGCTTA+GGG | + | chr8.1:38497129-38497148 | MS.gene61064:intron | 35.0% |
| !! | TTACTTTTGAACCAAGGTTG+CGG | - | chr8.1:38496837-38496856 | None:intergenic | 35.0% |
| !!! | GGTCATAAATTGGTTTTGTG+AGG | + | chr8.1:38496604-38496623 | MS.gene61064:intron | 35.0% |
| AAATGCTAACAAGTGCCCTA+AGG | - | chr8.1:38497108-38497127 | None:intergenic | 40.0% | |
| AAGTTGCACTATTCTTGACG+TGG | + | chr8.1:38494910-38494929 | MS.gene61064:CDS | 40.0% | |
| AATGCTAACAAGTGCCCTAA+GGG | - | chr8.1:38497107-38497126 | None:intergenic | 40.0% | |
| AGGAATTTCTCGAACAAGAG+AGG | + | chr8.1:38496395-38496414 | MS.gene61064:CDS | 40.0% | |
| CAATGTCTAGCAGCAATTTC+AGG | - | chr8.1:38495621-38495640 | None:intergenic | 40.0% | |
| CCCTAAGCTAGAACTATAGA+AGG | - | chr8.1:38497132-38497151 | None:intergenic | 40.0% | |
| CCGCAGTACCTTTCTATTAT+GGG | + | chr8.1:38496926-38496945 | MS.gene61064:intron | 40.0% | |
| CGGTTATAGACTTGTATGGT+TGG | + | chr8.1:38496799-38496818 | MS.gene61064:intron | 40.0% | |
| CTTGCTAACAAGTGCCTTTA+GGG | + | chr8.1:38496950-38496969 | MS.gene61064:intron | 40.0% | |
| GAAAAGAAAGGTCTTCCAGT+TGG | + | chr8.1:38494875-38494894 | MS.gene61064:CDS | 40.0% | |
| GAATCAAACCTTAGACCTCA+AGG | + | chr8.1:38495266-38495285 | MS.gene61064:intron | 40.0% | |
| GCATGATCATAACTCACTTG+TGG | - | chr8.1:38496227-38496246 | None:intergenic | 40.0% | |
| GCTGTTCTGATGAATTAGGA+TGG | + | chr8.1:38496198-38496217 | MS.gene61064:CDS | 40.0% | |
| GGAATCTGTTGTGTCGAAAA+CGG | + | chr8.1:38494970-38494989 | MS.gene61064:CDS | 40.0% | |
| TCTTGCTAACAAGTGCCTTT+AGG | + | chr8.1:38496949-38496968 | MS.gene61064:intron | 40.0% | |
| TTATGCTTCAGCTTCACTTG+GGG | + | chr8.1:38496114-38496133 | MS.gene61064:intron | 40.0% | |
| TTCCGCTGTTCTGATGAATT+AGG | + | chr8.1:38496194-38496213 | MS.gene61064:CDS | 40.0% | |
| TTTCGACACAACAGATTCCA+TGG | - | chr8.1:38494969-38494988 | None:intergenic | 40.0% | |
| !! | AGTGGCTATAGAAGCACTAT+AGG | - | chr8.1:38495869-38495888 | None:intergenic | 40.0% |
| !! | CCCATAATAGAAAGGTACTG+CGG | - | chr8.1:38496929-38496948 | None:intergenic | 40.0% |
| !! | CCCTTCTATAGTTCTAGCTT+AGG | + | chr8.1:38497128-38497147 | MS.gene61064:intron | 40.0% |
| !! | CTATAGTTCTAGCTTAGGGT+TGG | + | chr8.1:38497133-38497152 | MS.gene61064:intron | 40.0% |
| !! | GCCTTTATTTCTGACTAACG+TGG | - | chr8.1:38496551-38496570 | None:intergenic | 40.0% |
| !! | TGCCTTTAGGGCACTTATTA+AGG | + | chr8.1:38496962-38496981 | MS.gene61064:intron | 40.0% |
| !!! | TGGTTTTGTGAGGTTGAGAT+TGG | + | chr8.1:38496614-38496633 | MS.gene61064:intron | 40.0% |
| AGCAGTTATGGCAGCGTTAT+AGG | - | chr8.1:38495966-38495985 | None:intergenic | 45.0% | |
| ATAAGTGGGTAGTTCGTTCG+AGG | - | chr8.1:38497218-38497237 | None:intergenic | 45.0% | |
| CTTCCAAGAGTAACACCAAC+TGG | - | chr8.1:38494893-38494912 | None:intergenic | 45.0% | |
| GAAACCAGTGCTGTCAATTG+CGG | + | chr8.1:38495796-38495815 | MS.gene61064:intron | 45.0% | |
| GAGAAATTCCTCCATCCTCA+AGG | - | chr8.1:38496386-38496405 | None:intergenic | 45.0% | |
| GCAAGTACCAATAGTCCTTG+AGG | + | chr8.1:38496368-38496387 | MS.gene61064:intron | 45.0% | |
| GCAGTTATGGCAGCGTTATA+GGG | - | chr8.1:38495965-38495984 | None:intergenic | 45.0% | |
| GCCGCAGTACCTTTCTATTA+TGG | + | chr8.1:38496925-38496944 | MS.gene61064:intron | 45.0% | |
| GTACCAATAGTCCTTGAGGA+TGG | + | chr8.1:38496372-38496391 | MS.gene61064:CDS | 45.0% | |
| GTAGGAGACATAGGCACAAT+TGG | - | chr8.1:38496896-38496915 | None:intergenic | 45.0% | |
| TATGCTTCAGCTTCACTTGG+GGG | + | chr8.1:38496115-38496134 | MS.gene61064:intron | 45.0% | |
| TCAAACCTTAGACCTCAAGG+AGG | + | chr8.1:38495269-38495288 | MS.gene61064:intron | 45.0% | |
| TCCATGGTCTGATAAAGCTG+AGG | - | chr8.1:38494953-38494972 | None:intergenic | 45.0% | |
| TCGCGTGATCTGTAACATGT+TGG | + | chr8.1:38496446-38496465 | MS.gene61064:intron | 45.0% | |
| ! | GTTTGTTAGAACCGCAACCT+TGG | + | chr8.1:38496823-38496842 | MS.gene61064:intron | 45.0% |
| ! | TCCTCAGCTTTATCAGACCA+TGG | + | chr8.1:38494949-38494968 | MS.gene61064:CDS | 45.0% |
| !! | CTTCCAGTTGGTGTTACTCT+TGG | + | chr8.1:38494887-38494906 | MS.gene61064:CDS | 45.0% |
| AAGGTTTGCCATTGAGCGGT+TGG | + | chr8.1:38496154-38496173 | MS.gene61064:CDS | 50.0% | |
| AGCAATGGCCTCCAAAAGAG+AGG | - | chr8.1:38497615-38497634 | None:intergenic | 50.0% | |
| ATTCTTGACGTGGCTGGTGA+TGG | + | chr8.1:38494920-38494939 | MS.gene61064:CDS | 50.0% | |
| CAATCCGCAATTGACAGCAC+TGG | - | chr8.1:38495803-38495822 | None:intergenic | 50.0% | |
| CCAATAGTCCTTGAGGATGG+AGG | + | chr8.1:38496375-38496394 | MS.gene61064:CDS | 50.0% | |
| CCTCCATCCTCAAGGACTAT+TGG | - | chr8.1:38496378-38496397 | None:intergenic | 50.0% | |
| CTATGTCTCCTACTGCAGAG+CGG | + | chr8.1:38496903-38496922 | MS.gene61064:intron | 50.0% | |
| CTGCAAGGTTTGCCATTGAG+CGG | + | chr8.1:38496150-38496169 | MS.gene61064:CDS | 50.0% | |
| GATCCCAAGCCAATACCACT+AGG | + | chr8.1:38495304-38495323 | MS.gene61064:intron | 50.0% | |
| GTGATGATATCAGTCGACGC+AGG | + | chr8.1:38497461-38497480 | MS.gene61064:CDS | 50.0% | |
| TGCACTATTCTTGACGTGGC+TGG | + | chr8.1:38494914-38494933 | MS.gene61064:CDS | 50.0% | |
| TGGGTAGTTCGTTCGAGGTA+CGG | - | chr8.1:38497213-38497232 | None:intergenic | 50.0% | |
| TGTCATAGGCCAACCCACTT+GGG | - | chr8.1:38495334-38495353 | None:intergenic | 50.0% | |
| TTCGTTCGAGGTACGGTTCA+GGG | - | chr8.1:38497206-38497225 | None:intergenic | 50.0% | |
| TTGTCATAGGCCAACCCACT+TGG | - | chr8.1:38495335-38495354 | None:intergenic | 50.0% | |
| ! | AGGGTTGGCATAGTACGACT+CGG | + | chr8.1:38497148-38497167 | MS.gene61064:intron | 50.0% |
| ! | CTTCGGTTCGCAGAACAGAA+GGG | + | chr8.1:38497518-38497537 | MS.gene61064:CDS | 50.0% |
| ! | TCAGGGGTAATGGTGCAAAC+TGG | - | chr8.1:38497189-38497208 | None:intergenic | 50.0% |
| ! | TCTTCGGTTCGCAGAACAGA+AGG | + | chr8.1:38497517-38497536 | MS.gene61064:CDS | 50.0% |
| !! | AGTGGTATTGGCTTGGGATC+TGG | - | chr8.1:38495304-38495323 | None:intergenic | 50.0% |
| !! | GTGGTATTGGCTTGGGATCT+GGG | - | chr8.1:38495303-38495322 | None:intergenic | 50.0% |
| !! | TGGCCTAGTGGTATTGGCTT+GGG | - | chr8.1:38495310-38495329 | None:intergenic | 50.0% |
| !! | TTGGCCTAGTGGTATTGGCT+TGG | - | chr8.1:38495311-38495330 | None:intergenic | 50.0% |
| !! | TTGGGTTGGCCTAGTGGTAT+TGG | - | chr8.1:38495316-38495335 | None:intergenic | 50.0% |
| ACCACTAGGCCAACCCAAGT+GGG | + | chr8.1:38495318-38495337 | MS.gene61064:intron | 55.0% | |
| ATAGGCCAACCCACTTGGGT+TGG | - | chr8.1:38495330-38495349 | None:intergenic | 55.0% | |
| ATTCACCGCCAACCGCTCAA+TGG | - | chr8.1:38496165-38496184 | None:intergenic | 55.0% | |
| CGCTCTGCAGTAGGAGACAT+AGG | - | chr8.1:38496905-38496924 | None:intergenic | 55.0% | |
| CTTCACTTGGGGGTGAACAG+TGG | + | chr8.1:38496125-38496144 | MS.gene61064:CDS | 55.0% | |
| GAGGTACGGTTCAGGGGTAA+TGG | - | chr8.1:38497199-38497218 | None:intergenic | 55.0% | |
| GTGCTCCTCCTTGAGGTCTA+AGG | - | chr8.1:38495277-38495296 | None:intergenic | 55.0% | |
| GTTCGTTCGAGGTACGGTTC+AGG | - | chr8.1:38497207-38497226 | None:intergenic | 55.0% | |
| GTTCTGCGAACCGAAGAGAG+TGG | - | chr8.1:38497514-38497533 | None:intergenic | 55.0% | |
| GTTTGCCATTGAGCGGTTGG+CGG | + | chr8.1:38496157-38496176 | MS.gene61064:CDS | 55.0% | |
| TACCACTAGGCCAACCCAAG+TGG | + | chr8.1:38495317-38495336 | MS.gene61064:intron | 55.0% | |
| TCGTTCGAGGTACGGTTCAG+GGG | - | chr8.1:38497205-38497224 | None:intergenic | 55.0% | |
| CTAGGCCAACCCAAGTGGGT+TGG | + | chr8.1:38495322-38495341 | MS.gene61064:intron | 60.0% | |
| GGGTGAACAGTGGAGCTGCA+AGG | + | chr8.1:38496135-38496154 | MS.gene61064:CDS | 60.0% | |
| ! | TGGGAGTGTGCTCCTCCTTG+AGG | - | chr8.1:38495284-38495303 | None:intergenic | 60.0% |
| !! | ACCCACTTGGGTTGGCCTAG+TGG | - | chr8.1:38495322-38495341 | None:intergenic | 60.0% |
| TACTGCGGCCGCTCTGCAGT+AGG | - | chr8.1:38496914-38496933 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 38494761 | 38497646 | 38494761 | ID=MS.gene61064 |
| chr8.1 | mRNA | 38494761 | 38497646 | 38494761 | ID=MS.gene61064.t1;Parent=MS.gene61064 |
| chr8.1 | exon | 38494761 | 38495021 | 38494761 | ID=MS.gene61064.t1.exon1;Parent=MS.gene61064.t1 |
| chr8.1 | CDS | 38494761 | 38495021 | 38494761 | ID=cds.MS.gene61064.t1;Parent=MS.gene61064.t1 |
| chr8.1 | exon | 38496125 | 38496229 | 38496125 | ID=MS.gene61064.t1.exon2;Parent=MS.gene61064.t1 |
| chr8.1 | CDS | 38496125 | 38496229 | 38496125 | ID=cds.MS.gene61064.t1;Parent=MS.gene61064.t1 |
| chr8.1 | exon | 38496369 | 38496416 | 38496369 | ID=MS.gene61064.t1.exon3;Parent=MS.gene61064.t1 |
| chr8.1 | CDS | 38496369 | 38496416 | 38496369 | ID=cds.MS.gene61064.t1;Parent=MS.gene61064.t1 |
| chr8.1 | exon | 38497404 | 38497646 | 38497404 | ID=MS.gene61064.t1.exon4;Parent=MS.gene61064.t1 |
| chr8.1 | CDS | 38497404 | 38497646 | 38497404 | ID=cds.MS.gene61064.t1;Parent=MS.gene61064.t1 |
| Gene Sequence |
| Protein sequence |
