Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62899.t1 | XP_003608713.1 | 98.6 | 443 | 6 | 0 | 270 | 712 | 30 | 472 | 7.30E-259 | 903.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62899.t1 | Q8VZP6 | 69.3 | 440 | 135 | 0 | 273 | 712 | 58 | 497 | 4.0e-189 | 662.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62899.t1 | G7JIW7 | 98.6 | 443 | 6 | 0 | 270 | 712 | 30 | 472 | 5.2e-259 | 903.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049166 | MS.gene62899 | 0.802886 | 4.53E-49 | -1.69E-46 |
| MS.gene04918 | MS.gene62899 | 0.808919 | 2.44E-50 | -1.69E-46 |
| MS.gene04920 | MS.gene62899 | 0.811092 | 8.32E-51 | -1.69E-46 |
| MS.gene049254 | MS.gene62899 | 0.821244 | 4.48E-53 | -1.69E-46 |
| MS.gene049283 | MS.gene62899 | 0.838117 | 3.48E-57 | -1.69E-46 |
| MS.gene049368 | MS.gene62899 | 0.801706 | 7.93E-49 | -1.69E-46 |
| MS.gene049499 | MS.gene62899 | 0.822812 | 1.94E-53 | -1.69E-46 |
| MS.gene049680 | MS.gene62899 | 0.805563 | 1.26E-49 | -1.69E-46 |
| MS.gene049786 | MS.gene62899 | 0.808691 | 2.73E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene62899 | 0.823855 | 1.11E-53 | -1.69E-46 |
| MS.gene050646 | MS.gene62899 | 0.813658 | 2.29E-51 | -1.69E-46 |
| MS.gene050654 | MS.gene62899 | 0.808743 | 2.67E-50 | -1.69E-46 |
| MS.gene050752 | MS.gene62899 | 0.813118 | 3.01E-51 | -1.69E-46 |
| MS.gene050945 | MS.gene62899 | 0.810308 | 1.23E-50 | -1.69E-46 |
| MS.gene050955 | MS.gene62899 | 0.805636 | 1.21E-49 | -1.69E-46 |
| MS.gene051003 | MS.gene62899 | 0.832385 | 9.74E-56 | -1.69E-46 |
| MS.gene051234 | MS.gene62899 | 0.815496 | 8.97E-52 | -1.69E-46 |
| MS.gene051343 | MS.gene62899 | 0.830153 | 3.45E-55 | -1.69E-46 |
| MS.gene051363 | MS.gene62899 | 0.800721 | 1.26E-48 | -1.69E-46 |
| MS.gene051365 | MS.gene62899 | 0.814064 | 1.86E-51 | -1.69E-46 |
| MS.gene051597 | MS.gene62899 | 0.829568 | 4.79E-55 | -1.69E-46 |
| MS.gene051676 | MS.gene62899 | 0.839633 | 1.41E-57 | -1.69E-46 |
| MS.gene05188 | MS.gene62899 | 0.822745 | 2.01E-53 | -1.69E-46 |
| MS.gene051902 | MS.gene62899 | 0.813938 | 1.99E-51 | -1.69E-46 |
| MS.gene051975 | MS.gene62899 | 0.864044 | 1.61E-64 | -1.69E-46 |
| MS.gene052072 | MS.gene62899 | 0.838505 | 2.76E-57 | -1.69E-46 |
| MS.gene052342 | MS.gene62899 | 0.803034 | 4.23E-49 | -1.69E-46 |
| MS.gene052434 | MS.gene62899 | 0.815247 | 1.02E-51 | -1.69E-46 |
| MS.gene052518 | MS.gene62899 | 0.804787 | 1.83E-49 | -1.69E-46 |
| MS.gene052533 | MS.gene62899 | 0.822917 | 1.83E-53 | -1.69E-46 |
| MS.gene052954 | MS.gene62899 | 0.805548 | 1.27E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene62899 | 0.801934 | 7.12E-49 | -1.69E-46 |
| MS.gene053298 | MS.gene62899 | 0.839574 | 1.46E-57 | -1.69E-46 |
| MS.gene053931 | MS.gene62899 | 0.817224 | 3.68E-52 | -1.69E-46 |
| MS.gene053963 | MS.gene62899 | 0.829413 | 5.22E-55 | -1.69E-46 |
| MS.gene054403 | MS.gene62899 | 0.815429 | 9.29E-52 | -1.69E-46 |
| MS.gene05458 | MS.gene62899 | 0.808898 | 2.47E-50 | -1.69E-46 |
| MS.gene05469 | MS.gene62899 | 0.816432 | 5.55E-52 | -1.69E-46 |
| MS.gene054892 | MS.gene62899 | 0.807541 | 4.81E-50 | -1.69E-46 |
| MS.gene054893 | MS.gene62899 | 0.806725 | 7.15E-50 | -1.69E-46 |
| MS.gene05517 | MS.gene62899 | 0.821668 | 3.57E-53 | -1.69E-46 |
| MS.gene055513 | MS.gene62899 | 0.826124 | 3.22E-54 | -1.69E-46 |
| MS.gene055603 | MS.gene62899 | 0.814352 | 1.61E-51 | -1.69E-46 |
| MS.gene055841 | MS.gene62899 | 0.811403 | 7.13E-51 | -1.69E-46 |
| MS.gene056181 | MS.gene62899 | 0.804363 | 2.24E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene62899 | 0.847905 | 8.60E-60 | -1.69E-46 |
| MS.gene056786 | MS.gene62899 | 0.800403 | 1.47E-48 | -1.69E-46 |
| MS.gene056787 | MS.gene62899 | 0.80703 | 6.17E-50 | -1.69E-46 |
| MS.gene05689 | MS.gene62899 | 0.802171 | 6.37E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene62899 | 0.8563 | 3.53E-62 | -1.69E-46 |
| MS.gene057102 | MS.gene62899 | 0.868782 | 5.05E-66 | -1.69E-46 |
| MS.gene057155 | MS.gene62899 | 0.823992 | 1.03E-53 | -1.69E-46 |
| MS.gene057208 | MS.gene62899 | 0.840272 | 9.61E-58 | -1.69E-46 |
| MS.gene057622 | MS.gene62899 | 0.822949 | 1.80E-53 | -1.69E-46 |
| MS.gene05781 | MS.gene62899 | 0.828961 | 6.72E-55 | -1.69E-46 |
| MS.gene057999 | MS.gene62899 | 0.855446 | 6.28E-62 | -1.69E-46 |
| MS.gene058008 | MS.gene62899 | 0.811881 | 5.61E-51 | -1.69E-46 |
| MS.gene058592 | MS.gene62899 | 0.826677 | 2.38E-54 | -1.69E-46 |
| MS.gene058783 | MS.gene62899 | 0.800078 | 1.71E-48 | -1.69E-46 |
| MS.gene059146 | MS.gene62899 | 0.857243 | 1.86E-62 | -1.69E-46 |
| MS.gene05952 | MS.gene62899 | 0.817726 | 2.84E-52 | -1.69E-46 |
| MS.gene059830 | MS.gene62899 | 0.811483 | 6.84E-51 | -1.69E-46 |
| MS.gene05985 | MS.gene62899 | -0.835995 | 1.21E-56 | -1.69E-46 |
| MS.gene059901 | MS.gene62899 | -0.814534 | 1.47E-51 | -1.69E-46 |
| MS.gene059935 | MS.gene62899 | 0.805056 | 1.61E-49 | -1.69E-46 |
| MS.gene06011 | MS.gene62899 | 0.851855 | 6.76E-61 | -1.69E-46 |
| MS.gene060244 | MS.gene62899 | 0.817677 | 2.91E-52 | -1.69E-46 |
| MS.gene060259 | MS.gene62899 | 0.806969 | 6.35E-50 | -1.69E-46 |
| MS.gene060365 | MS.gene62899 | 0.844907 | 5.65E-59 | -1.69E-46 |
| MS.gene060586 | MS.gene62899 | 0.800951 | 1.13E-48 | -1.69E-46 |
| MS.gene060763 | MS.gene62899 | 0.842585 | 2.36E-58 | -1.69E-46 |
| MS.gene060933 | MS.gene62899 | 0.828642 | 8.03E-55 | -1.69E-46 |
| MS.gene060935 | MS.gene62899 | 0.859348 | 4.40E-63 | -1.69E-46 |
| MS.gene060937 | MS.gene62899 | 0.860436 | 2.07E-63 | -1.69E-46 |
| MS.gene061100 | MS.gene62899 | 0.804445 | 2.15E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62899.t1 | MTR_4g100950 | 98.646 | 443 | 6 | 0 | 270 | 712 | 30 | 472 | 0.0 | 908 |
| MS.gene62899.t1 | MTR_5g012590 | 79.778 | 450 | 91 | 0 | 263 | 712 | 25 | 474 | 0.0 | 773 |
| MS.gene62899.t1 | MTR_4g100970 | 99.559 | 227 | 1 | 0 | 1 | 227 | 1 | 227 | 1.80e-161 | 464 |
| MS.gene62899.t1 | MTR_7g115460 | 31.203 | 266 | 165 | 8 | 271 | 530 | 28 | 281 | 3.46e-27 | 117 |
| MS.gene62899.t1 | MTR_1g080460 | 32.171 | 258 | 157 | 8 | 279 | 530 | 27 | 272 | 4.28e-27 | 116 |
| MS.gene62899.t1 | MTR_7g113610 | 24.725 | 182 | 125 | 4 | 274 | 448 | 260 | 436 | 3.43e-13 | 73.2 |
| MS.gene62899.t1 | MTR_1g019540 | 27.528 | 178 | 117 | 6 | 272 | 448 | 243 | 409 | 5.10e-13 | 72.8 |
| MS.gene62899.t1 | MTR_1g019530 | 28.652 | 178 | 115 | 6 | 272 | 448 | 292 | 458 | 7.19e-13 | 72.4 |
| MS.gene62899.t1 | MTR_1g019540 | 27.528 | 178 | 117 | 6 | 272 | 448 | 296 | 462 | 8.03e-13 | 72.0 |
| MS.gene62899.t1 | MTR_1g029130 | 24.277 | 173 | 122 | 4 | 276 | 448 | 292 | 455 | 5.68e-12 | 69.3 |
| MS.gene62899.t1 | MTR_3g095910 | 25.581 | 172 | 119 | 4 | 277 | 448 | 304 | 466 | 6.43e-12 | 69.3 |
| MS.gene62899.t1 | MTR_1g082880 | 28.676 | 136 | 92 | 3 | 313 | 448 | 301 | 431 | 6.95e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62899.t1 | AT4G16600 | 67.672 | 464 | 145 | 2 | 254 | 712 | 31 | 494 | 0.0 | 665 |
| MS.gene62899.t1 | AT2G35710 | 67.100 | 462 | 151 | 1 | 252 | 712 | 36 | 497 | 0.0 | 653 |
| MS.gene62899.t1 | AT2G35710 | 68.848 | 382 | 119 | 0 | 331 | 712 | 8 | 389 | 0.0 | 559 |
| MS.gene62899.t1 | AT2G35710 | 72.438 | 283 | 77 | 1 | 252 | 533 | 36 | 318 | 2.31e-153 | 447 |
| MS.gene62899.t1 | AT3G13200 | 73.913 | 230 | 57 | 1 | 1 | 227 | 1 | 230 | 1.66e-95 | 295 |
| MS.gene62899.t1 | AT5G18480 | 33.077 | 260 | 156 | 8 | 277 | 530 | 30 | 277 | 4.42e-30 | 125 |
| MS.gene62899.t1 | AT2G35710 | 58.750 | 80 | 32 | 1 | 252 | 330 | 36 | 115 | 4.38e-23 | 95.1 |
| MS.gene62899.t1 | AT1G08990 | 26.601 | 203 | 136 | 6 | 248 | 448 | 248 | 439 | 1.57e-14 | 77.4 |
| MS.gene62899.t1 | AT4G33330 | 26.404 | 178 | 120 | 5 | 272 | 448 | 227 | 394 | 2.46e-13 | 73.6 |
| MS.gene62899.t1 | AT4G33330 | 26.404 | 178 | 120 | 5 | 272 | 448 | 295 | 462 | 3.39e-13 | 73.6 |
| MS.gene62899.t1 | AT4G33330 | 26.404 | 178 | 120 | 5 | 272 | 448 | 306 | 473 | 3.57e-13 | 73.2 |
| MS.gene62899.t1 | AT4G33330 | 26.404 | 178 | 120 | 5 | 272 | 448 | 295 | 462 | 4.68e-13 | 73.2 |
| MS.gene62899.t1 | AT4G33330 | 26.744 | 172 | 115 | 5 | 272 | 442 | 306 | 467 | 3.86e-12 | 69.7 |
| MS.gene62899.t1 | AT1G54940 | 25.749 | 167 | 118 | 4 | 283 | 448 | 271 | 432 | 1.08e-11 | 68.6 |
| MS.gene62899.t1 | AT3G18660 | 25.000 | 172 | 120 | 4 | 277 | 448 | 321 | 483 | 1.48e-11 | 68.2 |
| MS.gene62899.t1 | AT3G18660 | 25.000 | 172 | 120 | 4 | 277 | 448 | 317 | 479 | 1.48e-11 | 68.2 |
| MS.gene62899.t1 | AT3G18660 | 25.000 | 172 | 120 | 4 | 277 | 448 | 316 | 478 | 1.56e-11 | 68.2 |
Find 170 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCAGAACCAGACCCTTTC+GGG | 0.241801 | 8.1:+22319621 | MS.gene62899:intron |
| CATAAAACCTTCCCTTTCTA+AGG | 0.244064 | 8.1:-22330048 | None:intergenic |
| AGTAATGAGAGTGGAAAATT+TGG | 0.252535 | 8.1:+22327159 | MS.gene62899:CDS |
| ATGCCATGGTTTGGTATTAT+TGG | 0.258735 | 8.1:+22329891 | MS.gene62899:CDS |
| CGGCTCTTTGTCTCTATGTT+TGG | 0.294548 | 8.1:+22329827 | MS.gene62899:CDS |
| CATGGCGTTTCCTTGGTATC+TGG | 0.300906 | 8.1:+22329926 | MS.gene62899:CDS |
| CCATCAAGTTTGGTGCCATT+TGG | 0.301394 | 8.1:-22328603 | None:intergenic |
| TAGGATAATGGCTGGACTTC+AGG | 0.304030 | 8.1:+22330022 | MS.gene62899:CDS |
| GAGACTCTTCACCACCTTCT+TGG | 0.316327 | 8.1:+22330081 | MS.gene62899:CDS |
| GCCTTGTTCGTTTCCACCTT+TGG | 0.329362 | 8.1:-22308623 | None:intergenic |
| GGGAATGTAATCACACTATT+TGG | 0.332168 | 8.1:-22328814 | None:intergenic |
| ATTGGGTGGTTGAAGACTTC+TGG | 0.332448 | 8.1:-22319670 | None:intergenic |
| TACAGGTCTCTTCGTATTGC+AGG | 0.341913 | 8.1:+22327375 | MS.gene62899:CDS |
| CCAAATGGCACCAAACTTGA+TGG | 0.364079 | 8.1:+22328603 | MS.gene62899:CDS |
| AAATTATCTTGATGCTTGTA+AGG | 0.367087 | 8.1:-22327187 | None:intergenic |
| GGATGACACTGAAGCTTTGC+TGG | 0.370195 | 8.1:+22310285 | MS.gene62899:CDS |
| CTGTTGATGTTCCTCTTCGT+TGG | 0.371810 | 8.1:+22323657 | MS.gene62899:CDS |
| TCTATATGTTCCATCAAGTT+TGG | 0.372918 | 8.1:-22328613 | None:intergenic |
| TCCTCAAACTAGTAGCTCTA+TGG | 0.374266 | 8.1:+22329721 | MS.gene62899:CDS |
| TTATCAGAACCAGACCCTTT+CGG | 0.376788 | 8.1:+22319620 | MS.gene62899:intron |
| CCTAGCATTGGGTGAATTGT+TGG | 0.378021 | 8.1:-22329786 | None:intergenic |
| GACATCTATTACTAGGATAA+TGG | 0.378243 | 8.1:+22330010 | MS.gene62899:CDS |
| GTAAGAGCTTTATGTGTGTT+TGG | 0.378459 | 8.1:+22329957 | MS.gene62899:CDS |
| ATTCAATCAGCAATATATCT+TGG | 0.391695 | 8.1:+22329609 | MS.gene62899:CDS |
| AAATAGTGTGATTACATTCC+CGG | 0.395954 | 8.1:+22328816 | MS.gene62899:CDS |
| ACTCTATGCTTGGAGCTTAG+TGG | 0.397554 | 8.1:+22327240 | MS.gene62899:CDS |
| GATGAATCGCTTTGCGAGCT+TGG | 0.402778 | 8.1:-22311489 | None:intergenic |
| TTGAAACCATCCACAACATA+AGG | 0.406930 | 8.1:+22319647 | MS.gene62899:CDS |
| CATCTTTCAGTGTCAAAAGA+AGG | 0.407995 | 8.1:+22310901 | MS.gene62899:CDS |
| GGCTGGCCTTTGTATTTCCT+CGG | 0.409780 | 8.1:+22329807 | MS.gene62899:CDS |
| GGCTTCAACCATGGTGCCCC+CGG | 0.412719 | 8.1:-22328835 | None:intergenic |
| GGAACATATAGACTTCCTTT+AGG | 0.418100 | 8.1:+22328624 | MS.gene62899:CDS |
| CAGTGGTTCGTCGTCGGCGC+TGG | 0.421240 | 8.1:-22319730 | None:intergenic |
| AAACCTTGGTCTGCACCATC+TGG | 0.423008 | 8.1:-22328528 | None:intergenic |
| TCATGCCACTGGAGGCCTAA+TGG | 0.423960 | 8.1:-22328886 | None:intergenic |
| TCCATGCTTTGACAGATGAC+AGG | 0.425910 | 8.1:+22309523 | MS.gene62899:intron |
| GACTTCAGGTTTCCTTAGAA+AGG | 0.430161 | 8.1:+22330036 | MS.gene62899:CDS |
| AATAATAGCACTGACTCGTT+TGG | 0.435751 | 8.1:+22329632 | MS.gene62899:CDS |
| TCCTTGAACACCACCATTGA+TGG | 0.437902 | 8.1:-22328471 | None:intergenic |
| CCTTTGGCCGGTGCCCATGT+TGG | 0.438499 | 8.1:-22308607 | None:intergenic |
| CGTTTCCTTGGTATCTGGAT+GGG | 0.440117 | 8.1:+22329931 | MS.gene62899:CDS |
| GCGTTTCCTTGGTATCTGGA+TGG | 0.441751 | 8.1:+22329930 | MS.gene62899:CDS |
| CAATTCACCCAATGCTAGGC+TGG | 0.443027 | 8.1:+22329790 | MS.gene62899:CDS |
| TGCGAGCTTGGTTTCTCCAC+GGG | 0.448028 | 8.1:-22311477 | None:intergenic |
| TGGAGGCCTAATGGCAGGAC+AGG | 0.448611 | 8.1:-22328877 | None:intergenic |
| CTTACTTCATGTATTTGTGC+AGG | 0.449310 | 8.1:-22311547 | None:intergenic |
| TTTCAGATCTTAAACTTCGC+TGG | 0.449803 | 8.1:+22328776 | MS.gene62899:intron |
| TCCATAGAGCTACTAGTTTG+AGG | 0.450635 | 8.1:-22329722 | None:intergenic |
| GCCATCAATGGTGGTGTTCA+AGG | 0.453239 | 8.1:+22328470 | MS.gene62899:intron |
| TATAATTTGTTGAACCAAGA+AGG | 0.455019 | 8.1:-22330095 | None:intergenic |
| TCAAGTTTGGTGCCATTTGG+AGG | 0.457138 | 8.1:-22328600 | None:intergenic |
| TGTTCGTTTCCACCTTTGGC+CGG | 0.457672 | 8.1:-22308619 | None:intergenic |
| CATTGAACAAACTCTATGCT+TGG | 0.459578 | 8.1:+22327230 | MS.gene62899:CDS |
| CCGGTTCTGATGCCATGGTT+TGG | 0.460780 | 8.1:+22329882 | MS.gene62899:CDS |
| ATGTCGGGTTATTGATCAAA+GGG | 0.461011 | 8.1:-22310881 | None:intergenic |
| TGTTGTTCGTGATCAAAGAT+TGG | 0.462849 | 8.1:-22319688 | None:intergenic |
| TACAAAGGCCAGCCTAGCAT+TGG | 0.466853 | 8.1:-22329798 | None:intergenic |
| TTGACAGATGACAGGGATCA+TGG | 0.467290 | 8.1:+22309531 | MS.gene62899:intron |
| TAATTGTCATGGCGTTTCCT+TGG | 0.468716 | 8.1:+22329919 | MS.gene62899:CDS |
| GCGTGGCCTGTCCTGCCATT+AGG | 0.469769 | 8.1:+22328871 | MS.gene62899:CDS |
| GGTGAAGAGTCTCCTAATCT+AGG | 0.474182 | 8.1:-22330071 | None:intergenic |
| TGTTGGAGGAATGACGAAGA+AGG | 0.474444 | 8.1:-22329769 | None:intergenic |
| ATTTGTGCAGGAATTTCCTA+TGG | 0.474919 | 8.1:-22311535 | None:intergenic |
| CCAAACCATGGCATCAGAAC+CGG | 0.478962 | 8.1:-22329882 | None:intergenic |
| TGTTACCGGTTCTGATGCCA+TGG | 0.482630 | 8.1:+22329877 | MS.gene62899:CDS |
| TGGTTCAACAAATTATATTG+AGG | 0.482644 | 8.1:+22330101 | MS.gene62899:CDS |
| ATGATACTTGCAGCCATCAA+TGG | 0.485333 | 8.1:+22328458 | MS.gene62899:intron |
| TTCTGGCCTTATGTTGTGGA+TGG | 0.486434 | 8.1:-22319653 | None:intergenic |
| TTATGAAAGGGTAGTGATGT+TGG | 0.490157 | 8.1:+22327264 | MS.gene62899:CDS |
| AGAGGAAGATCTTAAAGTAA+AGG | 0.493826 | 8.1:+22310836 | MS.gene62899:CDS |
| CATGGTTGAAGCCGTGGTAT+TGG | 0.495505 | 8.1:+22328845 | MS.gene62899:CDS |
| ACTTCCTTTAGGCTATCAAA+TGG | 0.496867 | 8.1:+22328635 | MS.gene62899:CDS |
| GATTCATCAATGACACCATC+AGG | 0.497137 | 8.1:+22311504 | MS.gene62899:CDS |
| AATAGTGTGATTACATTCCC+GGG | 0.500581 | 8.1:+22328817 | MS.gene62899:CDS |
| TTGTTTCATCCACCTCCAAA+TGG | 0.507704 | 8.1:+22328588 | MS.gene62899:CDS |
| TTGCGAGCTTGGTTTCTCCA+CGG | 0.514076 | 8.1:-22311478 | None:intergenic |
| AGACTTCTGGCCTTATGTTG+TGG | 0.514551 | 8.1:-22319657 | None:intergenic |
| ACAAAGGCCAGCCTAGCATT+GGG | 0.515190 | 8.1:-22329797 | None:intergenic |
| GTTTCCTTGGTATCTGGATG+GGG | 0.519055 | 8.1:+22329932 | MS.gene62899:CDS |
| ATGGTTCATGAATTACAGAA+TGG | 0.519414 | 8.1:+22328495 | MS.gene62899:CDS |
| GGAGCTTAGTGGATTATGAA+AGG | 0.520689 | 8.1:+22327251 | MS.gene62899:CDS |
| TTGAACAAATAAAGAAGGAA+AGG | 0.524193 | 8.1:+22310314 | MS.gene62899:CDS |
| CGCTAGACCAACATGGGCAC+CGG | 0.524224 | 8.1:+22308600 | MS.gene62899:CDS |
| ACTTCAGGTTTCCTTAGAAA+GGG | 0.525332 | 8.1:+22330037 | MS.gene62899:CDS |
| GGTTGAAGCCGTGGTATTGG+TGG | 0.532610 | 8.1:+22328848 | MS.gene62899:CDS |
| GAGCTTAGTGGATTATGAAA+GGG | 0.533169 | 8.1:+22327252 | MS.gene62899:CDS |
| TCTATTACTAGGATAATGGC+TGG | 0.534447 | 8.1:+22330014 | MS.gene62899:CDS |
| TGAACAAATAAAGAAGGAAA+GGG | 0.539554 | 8.1:+22310315 | MS.gene62899:CDS |
| GCCACTGGAGGCCTAATGGC+AGG | 0.541403 | 8.1:-22328882 | None:intergenic |
| GTTGTTCGTGATCAAAGATT+GGG | 0.543436 | 8.1:-22319687 | None:intergenic |
| TGAGCTTGAACAAATAAAGA+AGG | 0.544665 | 8.1:+22310309 | MS.gene62899:CDS |
| AGCCGTGGTATTGGTGGGCG+TGG | 0.545277 | 8.1:+22328854 | MS.gene62899:CDS |
| CAATACCACGGCTTCAACCA+TGG | 0.545708 | 8.1:-22328844 | None:intergenic |
| CAGGTTTCCTTAGAAAGGGA+AGG | 0.546196 | 8.1:+22330041 | MS.gene62899:CDS |
| CCATGCTTTGACAGATGACA+GGG | 0.549331 | 8.1:+22309524 | MS.gene62899:intron |
| TGGTTCATGAATTACAGAAT+GGG | 0.549433 | 8.1:+22328496 | MS.gene62899:CDS |
| AATAAAGAAGGAAAGGGCAC+AGG | 0.549972 | 8.1:+22310321 | MS.gene62899:CDS |
| GATGACAGGGATCATGGAAG+GGG | 0.552181 | 8.1:+22309537 | MS.gene62899:intron |
| CAGCGCCGACGACGAACCAC+TGG | 0.555734 | 8.1:+22319731 | MS.gene62899:CDS |
| GAAAGACGGGCAGGATACAC+AGG | 0.556936 | 8.1:+22309287 | MS.gene62899:CDS |
| GTTGGAGGAATGACGAAGAA+GGG | 0.558172 | 8.1:-22329768 | None:intergenic |
| CGACCGCCGCTAGACCAACA+TGG | 0.559680 | 8.1:+22308593 | MS.gene62899:CDS |
| AGCATTGGGTGAATTGTTGG+AGG | 0.560950 | 8.1:-22329783 | None:intergenic |
| GATGTCGGGTTATTGATCAA+AGG | 0.561231 | 8.1:-22310882 | None:intergenic |
| GCATCCATTTGATAGCCTAA+AGG | 0.562445 | 8.1:-22328639 | None:intergenic |
| CCAACAATTCACCCAATGCT+AGG | 0.563296 | 8.1:+22329786 | MS.gene62899:CDS |
| AGTTTGGTGCCATTTGGAGG+TGG | 0.563811 | 8.1:-22328597 | None:intergenic |
| AGTAGCTAGCTATGAAACCT+TGG | 0.564843 | 8.1:-22328542 | None:intergenic |
| ACATGGGCACCGGCCAAAGG+TGG | 0.565377 | 8.1:+22308610 | MS.gene62899:CDS |
| GACAGGGATCATGGAAGGGG+CGG | 0.566656 | 8.1:+22309540 | MS.gene62899:CDS |
| GCAATACGAAGAGACCTGTA+TGG | 0.566682 | 8.1:-22327372 | None:intergenic |
| GGAAGATCTTAAAGTAAAGG+AGG | 0.567127 | 8.1:+22310839 | MS.gene62899:CDS |
| CGCACACCACTCTCAAACCT+AGG | 0.567486 | 8.1:+22308698 | MS.gene62899:CDS |
| CAGATGACAGGGATCATGGA+AGG | 0.571029 | 8.1:+22309535 | MS.gene62899:intron |
| GGGCACCATGGTTGAAGCCG+TGG | 0.571708 | 8.1:+22328839 | MS.gene62899:CDS |
| ATGTAGAACTCATAATCCCT+TGG | 0.575169 | 8.1:-22323566 | None:intergenic |
| TGTTACCAGTGGTTCGTCGT+CGG | 0.577873 | 8.1:-22319736 | None:intergenic |
| CACAGGATGAGTTAAAGAGA+AGG | 0.579428 | 8.1:+22309304 | MS.gene62899:CDS |
| TCCTGCCATTAGGCCTCCAG+TGG | 0.581240 | 8.1:+22328881 | MS.gene62899:CDS |
| TGGTGTCAAAGTAATGAGAG+TGG | 0.581328 | 8.1:+22327150 | MS.gene62899:CDS |
| GGCATCAGAACCGGTAACAC+CGG | 0.581953 | 8.1:-22329873 | None:intergenic |
| GCCAAAGGTGGAAACGAACA+AGG | 0.588363 | 8.1:+22308622 | MS.gene62899:CDS |
| CCAACATGGGCACCGGCCAA+AGG | 0.589099 | 8.1:+22308607 | MS.gene62899:CDS |
| ATCACACTATTTGGTCCGCA+TGG | 0.591621 | 8.1:-22328805 | None:intergenic |
| AGAAGCAATGACAACAAGAT+CGG | 0.594061 | 8.1:-22323636 | None:intergenic |
| ATATGCTACTATGATGTATG+TGG | 0.596892 | 8.1:+22323538 | MS.gene62899:CDS |
| CCATCAGGAATGATTTCCAT+AGG | 0.597909 | 8.1:+22311519 | MS.gene62899:CDS |
| AGATGACAGGGATCATGGAA+GGG | 0.602143 | 8.1:+22309536 | MS.gene62899:intron |
| GATGTATGTGGGTACACCAA+GGG | 0.603317 | 8.1:+22323550 | MS.gene62899:CDS |
| AATGGTGGTGTTCAAGGACA+TGG | 0.605244 | 8.1:+22328476 | MS.gene62899:CDS |
| CCTATGGAAATCATTCCTGA+TGG | 0.606526 | 8.1:-22311519 | None:intergenic |
| CAGTGATGACGACGACGATG+AGG | 0.607786 | 8.1:+22310264 | MS.gene62899:intron |
| CTCTGATAAGAGCATCACAT+TGG | 0.608542 | 8.1:+22329689 | MS.gene62899:CDS |
| AATCCAGATGGTGCAGACCA+AGG | 0.609113 | 8.1:+22328525 | MS.gene62899:CDS |
| GTATAGGTGGGATGATGATG+TGG | 0.611321 | 8.1:+22311439 | MS.gene62899:intron |
| GACCGCCGCTAGACCAACAT+GGG | 0.618179 | 8.1:+22308594 | MS.gene62899:CDS |
| CGGTGCCCATGTTGGTCTAG+CGG | 0.624635 | 8.1:-22308599 | None:intergenic |
| GCAGGAACAACAACAACAAG+AGG | 0.626881 | 8.1:+22310818 | MS.gene62899:intron |
| GGCACAGGAAAAGCTGCGCA+AGG | 0.629250 | 8.1:+22310336 | MS.gene62899:CDS |
| GGCCACGCCCACCAATACCA+CGG | 0.629997 | 8.1:-22328856 | None:intergenic |
| TAGCACTGACTCGTTTGGCA+AGG | 0.632007 | 8.1:+22329637 | MS.gene62899:CDS |
| AACTTGATGAACGTGAAAGG+AGG | 0.632430 | 8.1:+22309340 | MS.gene62899:CDS |
| AAGTCAACAGTGATGATGAA+AGG | 0.633175 | 8.1:+22309790 | MS.gene62899:CDS |
| GTTCGTGATCAAAGATTGGG+TGG | 0.638453 | 8.1:-22319684 | None:intergenic |
| ATGAACTTGATGAACGTGAA+AGG | 0.638541 | 8.1:+22309337 | MS.gene62899:CDS |
| TGCCCATGTTGGTCTAGCGG+CGG | 0.641332 | 8.1:-22308596 | None:intergenic |
| GTTGAAGCCGTGGTATTGGT+GGG | 0.643220 | 8.1:+22328849 | MS.gene62899:CDS |
| AGACCTGTATGGAAAACGCA+AGG | 0.655686 | 8.1:-22327361 | None:intergenic |
| AGAGCTCGAATCCAACGAAG+AGG | 0.655901 | 8.1:-22323668 | None:intergenic |
| TGATGTATGTGGGTACACCA+AGG | 0.659408 | 8.1:+22323549 | MS.gene62899:CDS |
| AAGGAGGCAGAGCTTATGCG+TGG | 0.661072 | 8.1:+22310855 | MS.gene62899:CDS |
| AACCTACCTAGGTTTGAGAG+TGG | 0.662167 | 8.1:-22308704 | None:intergenic |
| ACTACCCCATCCAGATACCA+AGG | 0.662797 | 8.1:-22329936 | None:intergenic |
| AAAGAGCCGAGGAAATACAA+AGG | 0.665546 | 8.1:-22329813 | None:intergenic |
| AACATAGAGACAAAGAGCCG+AGG | 0.669687 | 8.1:-22329824 | None:intergenic |
| TCATCTGCATCAACACTGCG+TGG | 0.670152 | 8.1:-22309756 | None:intergenic |
| ACTCCAATAATACCAAACCA+TGG | 0.673242 | 8.1:-22329894 | None:intergenic |
| TGATGCTCTTATCAGAGCGG+CGG | 0.674097 | 8.1:-22329683 | None:intergenic |
| AATGGGAGAGAAAATCCAGA+TGG | 0.680709 | 8.1:+22328513 | MS.gene62899:CDS |
| AATTTGTTGAACCAAGAAGG+TGG | 0.688780 | 8.1:-22330092 | None:intergenic |
| ATAGTGTGATTACATTCCCG+GGG | 0.688832 | 8.1:+22328818 | MS.gene62899:CDS |
| TATGCTACTATGATGTATGT+GGG | 0.691085 | 8.1:+22323539 | MS.gene62899:CDS |
| AGGGTGTTATATATGCAGCA+AGG | 0.692682 | 8.1:-22329749 | None:intergenic |
| GTTCATCAAGTTCATCACGT+AGG | 0.710689 | 8.1:-22309329 | None:intergenic |
| ACAGACGAGTTGTTTCAATG+TGG | 0.716404 | 8.1:+22327313 | MS.gene62899:CDS |
| ATACTTGCAGCCATCAATGG+TGG | 0.721919 | 8.1:+22328461 | MS.gene62899:intron |
| ATGTGATGCTCTTATCAGAG+CGG | 0.737743 | 8.1:-22329686 | None:intergenic |
| TAGTGTGATTACATTCCCGG+GGG | 0.767328 | 8.1:+22328819 | MS.gene62899:CDS |
| CTTCGCTGGAGCATACCATG+CGG | 0.779746 | 8.1:+22328790 | MS.gene62899:CDS |
| AAAGGTGGAAACGAACAAGG+CGG | 0.806134 | 8.1:+22308625 | MS.gene62899:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 22308589 | 22330121 | 22308589 | ID=MS.gene62899 |
| chr8.1 | mRNA | 22308589 | 22330121 | 22308589 | ID=MS.gene62899.t1;Parent=MS.gene62899 |
| chr8.1 | exon | 22308589 | 22308719 | 22308589 | ID=MS.gene62899.t1.exon1;Parent=MS.gene62899.t1 |
| chr8.1 | CDS | 22308589 | 22308719 | 22308589 | ID=cds.MS.gene62899.t1;Parent=MS.gene62899.t1 |
| chr8.1 | exon | 22309287 | 22309393 | 22309287 | ID=MS.gene62899.t1.exon2;Parent=MS.gene62899.t1 |
| chr8.1 | CDS | 22309287 | 22309393 | 22309287 | ID=cds.MS.gene62899.t1;Parent=MS.gene62899.t1 |
| chr8.1 | exon | 22309538 | 22309579 | 22309538 | ID=MS.gene62899.t1.exon3;Parent=MS.gene62899.t1 |
| chr8.1 | CDS | 22309538 | 22309579 | 22309538 | ID=cds.MS.gene62899.t1;Parent=MS.gene62899.t1 |
| chr8.1 | exon | 22309724 | 22309811 | 22309724 | ID=MS.gene62899.t1.exon4;Parent=MS.gene62899.t1 |
| chr8.1 | CDS | 22309724 | 22309811 | 22309724 | ID=cds.MS.gene62899.t1;Parent=MS.gene62899.t1 |
| chr8.1 | exon | 22310267 | 22310357 | 22310267 | ID=MS.gene62899.t1.exon5;Parent=MS.gene62899.t1 |
| chr8.1 | CDS | 22310267 | 22310357 | 22310267 | ID=cds.MS.gene62899.t1;Parent=MS.gene62899.t1 |
| chr8.1 | exon | 22310822 | 22310922 | 22310822 | ID=MS.gene62899.t1.exon6;Parent=MS.gene62899.t1 |
| chr8.1 | CDS | 22310822 | 22310922 | 22310822 | ID=cds.MS.gene62899.t1;Parent=MS.gene62899.t1 |
| chr8.1 | exon | 22311445 | 22311564 | 22311445 | ID=MS.gene62899.t1.exon7;Parent=MS.gene62899.t1 |
| chr8.1 | CDS | 22311445 | 22311564 | 22311445 | ID=cds.MS.gene62899.t1;Parent=MS.gene62899.t1 |
| chr8.1 | exon | 22319627 | 22319752 | 22319627 | ID=MS.gene62899.t1.exon8;Parent=MS.gene62899.t1 |
| chr8.1 | CDS | 22319627 | 22319752 | 22319627 | ID=cds.MS.gene62899.t1;Parent=MS.gene62899.t1 |
| chr8.1 | exon | 22323508 | 22323690 | 22323508 | ID=MS.gene62899.t1.exon9;Parent=MS.gene62899.t1 |
| chr8.1 | CDS | 22323508 | 22323690 | 22323508 | ID=cds.MS.gene62899.t1;Parent=MS.gene62899.t1 |
| chr8.1 | exon | 22327138 | 22327396 | 22327138 | ID=MS.gene62899.t1.exon10;Parent=MS.gene62899.t1 |
| chr8.1 | CDS | 22327138 | 22327396 | 22327138 | ID=cds.MS.gene62899.t1;Parent=MS.gene62899.t1 |
| chr8.1 | exon | 22328471 | 22328672 | 22328471 | ID=MS.gene62899.t1.exon11;Parent=MS.gene62899.t1 |
| chr8.1 | CDS | 22328471 | 22328672 | 22328471 | ID=cds.MS.gene62899.t1;Parent=MS.gene62899.t1 |
| chr8.1 | exon | 22328782 | 22328929 | 22328782 | ID=MS.gene62899.t1.exon12;Parent=MS.gene62899.t1 |
| chr8.1 | CDS | 22328782 | 22328929 | 22328782 | ID=cds.MS.gene62899.t1;Parent=MS.gene62899.t1 |
| chr8.1 | exon | 22329581 | 22330121 | 22329581 | ID=MS.gene62899.t1.exon13;Parent=MS.gene62899.t1 |
| chr8.1 | CDS | 22329581 | 22330121 | 22329581 | ID=cds.MS.gene62899.t1;Parent=MS.gene62899.t1 |
| Gene Sequence |
| Protein sequence |
