AlfalfaGEDB | MS.gene63726

M. sativa cultivar XinJiangDaYe / MS.gene63726

KEGG: K07904
GO: GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00071.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63726.t1	XP_003596326.1	98.6	145	2	0	4	148	73	217	4.80E-72	280.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63726.t1	Q39222	84.8	145	21	1	4	148	73	216	5.9e-63	241.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63726.t1	G7ITF9	98.6	145	2	0	4	148	73	217	3.5e-72	280.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049129	MS.gene63726	-0.832325	1.01E-55	-1.69E-46
MS.gene049341	MS.gene63726	0.801735	7.83E-49	-1.69E-46
MS.gene049350	MS.gene63726	0.82101	5.07E-53	-1.69E-46
MS.gene049411	MS.gene63726	0.849162	3.86E-60	-1.69E-46
MS.gene049580	MS.gene63726	0.803842	2.87E-49	-1.69E-46
MS.gene049807	MS.gene63726	0.836036	1.18E-56	-1.69E-46
MS.gene049887	MS.gene63726	0.876956	9.24E-69	-1.69E-46
MS.gene050277	MS.gene63726	0.813771	2.16E-51	-1.69E-46
MS.gene050320	MS.gene63726	0.805876	1.08E-49	-1.69E-46
MS.gene050437	MS.gene63726	0.815875	7.39E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63726.t1	MTR_2g075950	98.621	145	2	0	4	148	73	217	1.08e-102	293
MS.gene63726.t1	MTR_2g083860	77.397	146	32	1	4	148	73	218	3.67e-74	221
MS.gene63726.t1	MTR_2g014990	72.789	147	36	3	4	148	73	217	3.24e-73	218
MS.gene63726.t1	MTR_4g079350	70.748	147	39	3	4	148	73	217	1.93e-72	216
MS.gene63726.t1	MTR_4g088090	72.109	147	37	3	4	148	73	217	2.86e-72	216
MS.gene63726.t1	MTR_2g090865	71.918	146	38	3	4	148	71	214	7.17e-72	215
MS.gene63726.t1	MTR_4g064897	62.069	145	54	1	4	148	72	215	2.18e-62	191
MS.gene63726.t1	MTR_3g069510	57.931	145	61	0	4	148	72	216	6.48e-58	179
MS.gene63726.t1	MTR_2g005510	60.274	146	57	1	4	148	75	220	3.52e-57	177
MS.gene63726.t1	MTR_1g052475	55.705	149	61	3	4	147	75	223	3.91e-54	170

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63726.t1	AT1G16920	84.828	145	21	1	4	148	73	216	4.20e-87	253
MS.gene63726.t1	AT5G45750	80.690	145	27	1	4	148	73	216	4.56e-82	241
MS.gene63726.t1	AT4G18800	77.931	145	29	2	4	148	73	214	8.35e-80	235
MS.gene63726.t1	AT1G06400	73.103	145	38	1	4	148	73	216	5.12e-76	225
MS.gene63726.t1	AT1G28550	69.388	147	42	2	4	148	73	218	1.28e-73	219
MS.gene63726.t1	AT5G60860	70.748	147	39	3	4	148	73	217	2.18e-72	216
MS.gene63726.t1	AT3G15060	70.748	147	39	3	4	148	73	217	1.08e-71	214
MS.gene63726.t1	AT2G33870	68.027	147	44	2	4	148	73	218	6.97e-71	213
MS.gene63726.t1	AT4G18430	67.123	146	44	2	4	147	73	216	2.20e-70	211
MS.gene63726.t1	AT1G07410	61.379	145	54	2	4	148	72	214	4.31e-61	187

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Find 27 sgRNAs with CRISPR-Local

Find 62 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAGCATCACAACAATGT+TGG	0.538592	2.1:+23686415	None:intergenic
AACATTGTTGTGATGCTTGT+TGG	0.427166	2.1:-23686413	MS.gene63726:CDS
AACGCGTCTGTGCCAGCCAA+AGG	0.543390	2.1:-23686197	MS.gene63726:CDS
ACGATAGTAAGCACTTGTAA+TGG	0.555075	2.1:+23686535	None:intergenic
ATTACAAGTGCTTACTATCG+TGG	0.574326	2.1:-23686533	MS.gene63726:CDS
CAACAATGTTGGAATCTGTG+TGG	0.736098	2.1:+23686426	None:intergenic
CAGCTTTCTTGCTAACAATA+CGG	0.494643	2.1:+23686240	None:intergenic
CATGGAAACCTCAGCTCTGG+AGG	0.574684	2.1:-23686309	MS.gene63726:CDS
CATTTGAGAACGTCGACAGA+TGG	0.604678	2.1:-23686466	MS.gene63726:CDS
CGACGTTCTCAAATGTTGCA+TGG	0.590652	2.1:+23686474	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAACCAGAATTATGGGG+TGG	-	chr2.1:23686218-23686237	MS.gene63726:CDS	35.0%
AAAAACCAGAATTATGGGGT+GGG	-	chr2.1:23686219-23686238	MS.gene63726:CDS	35.0%
AACAAGCATCACAACAATGT+TGG	+	chr2.1:23686854-23686873	None:intergenic	35.0%
AACATTGTTGTGATGCTTGT+TGG	-	chr2.1:23686853-23686872	MS.gene63726:intron	35.0%
AAGGCCTAAAGTACAATAAG+TGG	-	chr2.1:23686537-23686556	MS.gene63726:CDS	35.0%
ACGATAGTAAGCACTTGTAA+TGG	+	chr2.1:23686734-23686753	None:intergenic	35.0%
ACTTATTGTACTTTAGGCCT+TGG	+	chr2.1:23686538-23686557	None:intergenic	35.0%
ATTACAAGTGCTTACTATCG+TGG	-	chr2.1:23686733-23686752	MS.gene63726:intron	35.0%
CAGCTTTCTTGCTAACAATA+CGG	+	chr2.1:23687029-23687048	None:intergenic	35.0%
GACACCACTTATTGTACTTT+AGG	+	chr2.1:23686544-23686563	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	23686133	23687155	23686133	ID=MS.gene63726
chr2.1	mRNA	23686133	23687155	23686133	ID=MS.gene63726.t1;Parent=MS.gene63726
chr2.1	exon	23687142	23687155	23687142	ID=MS.gene63726.t1.exon1;Parent=MS.gene63726.t1
chr2.1	CDS	23687142	23687155	23687142	ID=cds.MS.gene63726.t1;Parent=MS.gene63726.t1
chr2.1	exon	23686133	23686565	23686133	ID=MS.gene63726.t1.exon2;Parent=MS.gene63726.t1
chr2.1	CDS	23686133	23686565	23686133	ID=cds.MS.gene63726.t1;Parent=MS.gene63726.t1

Gene Sequence

>MS.gene63726

ATGTTCCTTGAAGAGTAATTGAACAATATACTTTCATTTCATTTTTATTTCTTAGTTAACTTGTATTTTTGAGCAAAGGCTGATTAAAAAACCAGAATTATGGGGTGGGATACCTGTGCAAAATCTGATGTGCCAATTATCAGTAGTAAAAATCTAAGGATATGCAGTTTTCAATCTTGATGTGCCCCTATTATTAGTATTAGAACTCTAAGAATGTGCGTGCAATTTTCAATCCTCTTGATGTGCCCCAATTGTTAGTATTAGAACTTTAAGGATGTGCAGTTTTCAGTTTTCATGATGCGCCCGAGTAACATTGTTTTTATTTAGCGGAATAGTCAAATATGCGATTATCAAACTTACAAATGATAGGTATGGAATTGCAGTATGATTCAAGTTCTGTAGCCAAGGCCTAAAGTACAATAAGTGGTGTCTTAATATCTGTAGTTGTCTTGTAACCACCTGAATGAACACGATGCTGCATAGTTGCTTTATGGTCCATTGTTACGATTGATTTGTAACAAGCTGCCAAATTTTGTAACTGACTTTAGTATGAAACTCATGTTAATAGTTCACACTGTTTCTATCTGCAGGTATCGCGCCATTACAAGTGCTTACTATCGTGGGGCAGTTGGTGCACTTCTTGTATATGATGTTACACGCCATGCAACATTTGAGAACGTCGACAGATGGCTGAAAGAACTGCGAAACCACACAGATTCCAACATTGTTGTGATGCTTGTTGGCAACAAAGCAGATCTCCGTCACCTTGTAGCCGTATCAACTGAAGATGGGAAGTCTTATGCCGAGAAAGAATCACTTTATTTCATGGAAACCTCAGCTCTGGAGGCTACTAACGTAGAGAATTCATTTGCTGAAGTTCTGACTCAAATCTACCGTATTGTTAGCAAGAAAGCTGTAGAGGGTGCTGAAAATGGAAACGCGTCTGTGCCAGCCAAAGGAGAGAAAATAGATCTTAAGAATGATGTTTCAGCTTTGAAGAGAGTTGGTTGCTGCTCAAGCTAA

Protein sequence

>MS.gene63726.t1

MFLEEYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELRNHTDSNIVVMLVGNKADLRHLVAVSTEDGKSYAEKESLYFMETSALEATNVENSFAEVLTQIYRIVSKKAVEGAENGNASVPAKGEKIDLKNDVSALKRVGCCSS