AlfalfaGEDB | MS.gene72203

M. sativa cultivar XinJiangDaYe / MS.gene72203

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72203.t1	XP_013468051.1	98.8	165	2	0	47	211	347	511	1.00E-88	336.3

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72203.t1	Q9LZS0	28.7	293	115	9	1	206	302	587	1.2e-16	88.2

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72203.t1	A0A072VKX9	98.8	165	2	0	47	211	347	511	7.6e-89	336.3

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene72203	0.830736	2.48E-55	-1.69E-46
MS.gene049255	MS.gene72203	0.812772	3.58E-51	-1.69E-46
MS.gene049341	MS.gene72203	0.8309	2.26E-55	-1.69E-46
MS.gene049501	MS.gene72203	0.803667	3.12E-49	-1.69E-46
MS.gene049821	MS.gene72203	0.81118	7.96E-51	-1.69E-46
MS.gene050020	MS.gene72203	0.877457	6.19E-69	-1.69E-46
MS.gene050303	MS.gene72203	0.829657	4.55E-55	-1.69E-46
MS.gene050438	MS.gene72203	0.817419	3.33E-52	-1.69E-46
MS.gene050586	MS.gene72203	0.803093	4.11E-49	-1.69E-46
MS.gene050807	MS.gene72203	0.857619	1.44E-62	-1.69E-46
MS.gene050808	MS.gene72203	0.835366	1.75E-56	-1.69E-46
MS.gene050815	MS.gene72203	0.872485	3.07E-67	-1.69E-46
MS.gene050844	MS.gene72203	0.807572	4.73E-50	-1.69E-46
MS.gene051180	MS.gene72203	0.816654	4.95E-52	-1.69E-46
MS.gene051243	MS.gene72203	0.812987	3.22E-51	-1.69E-46
MS.gene051247	MS.gene72203	0.809468	1.86E-50	-1.69E-46
MS.gene051265	MS.gene72203	0.804518	2.08E-49	-1.69E-46
MS.gene051328	MS.gene72203	0.84228	2.85E-58	-1.69E-46
MS.gene051344	MS.gene72203	0.803223	3.86E-49	-1.69E-46
MS.gene05134	MS.gene72203	0.801977	6.98E-49	-1.69E-46
MS.gene051388	MS.gene72203	0.813966	1.96E-51	-1.69E-46
MS.gene05157	MS.gene72203	0.808882	2.49E-50	-1.69E-46
MS.gene051626	MS.gene72203	0.81919	1.32E-52	-1.69E-46
MS.gene051700	MS.gene72203	0.800957	1.13E-48	-1.69E-46
MS.gene051719	MS.gene72203	0.836631	8.36E-57	-1.69E-46
MS.gene051720	MS.gene72203	0.827042	1.95E-54	-1.69E-46
MS.gene051789	MS.gene72203	0.812224	4.72E-51	-1.69E-46
MS.gene052012	MS.gene72203	0.812224	4.72E-51	-1.69E-46
MS.gene052020	MS.gene72203	0.80722	5.62E-50	-1.69E-46
MS.gene052133	MS.gene72203	0.807384	5.19E-50	-1.69E-46
MS.gene052519	MS.gene72203	0.802189	6.31E-49	-1.69E-46
MS.gene052611	MS.gene72203	0.809211	2.12E-50	-1.69E-46
MS.gene052613	MS.gene72203	0.803417	3.52E-49	-1.69E-46
MS.gene052665	MS.gene72203	0.834583	2.76E-56	-1.69E-46
MS.gene052863	MS.gene72203	0.82686	2.15E-54	-1.69E-46
MS.gene052896	MS.gene72203	0.806595	7.62E-50	-1.69E-46
MS.gene053008	MS.gene72203	0.845455	4.02E-59	-1.69E-46
MS.gene053074	MS.gene72203	0.848162	7.31E-60	-1.69E-46
MS.gene053221	MS.gene72203	0.802026	6.82E-49	-1.69E-46
MS.gene053226	MS.gene72203	0.82065	6.13E-53	-1.69E-46
MS.gene053630	MS.gene72203	0.824489	7.85E-54	-1.69E-46
MS.gene054185	MS.gene72203	0.804163	2.46E-49	-1.69E-46
MS.gene054472	MS.gene72203	0.817473	3.24E-52	-1.69E-46
MS.gene05462	MS.gene72203	0.800793	1.22E-48	-1.69E-46
MS.gene054658	MS.gene72203	0.805363	1.38E-49	-1.69E-46
MS.gene054713	MS.gene72203	0.805516	1.29E-49	-1.69E-46
MS.gene054775	MS.gene72203	0.800521	1.39E-48	-1.69E-46
MS.gene055356	MS.gene72203	0.802692	4.97E-49	-1.69E-46
MS.gene055358	MS.gene72203	0.806718	7.18E-50	-1.69E-46
MS.gene055465	MS.gene72203	0.820952	5.23E-53	-1.69E-46
MS.gene055466	MS.gene72203	0.852804	3.63E-61	-1.69E-46
MS.gene055468	MS.gene72203	0.843852	1.09E-58	-1.69E-46
MS.gene055512	MS.gene72203	0.819102	1.39E-52	-1.69E-46
MS.gene055608	MS.gene72203	0.852905	3.40E-61	-1.69E-46
MS.gene055818	MS.gene72203	0.829789	4.23E-55	-1.69E-46
MS.gene056069	MS.gene72203	-0.80166	8.11E-49	-1.69E-46
MS.gene056173	MS.gene72203	0.808101	3.65E-50	-1.69E-46
MS.gene056215	MS.gene72203	0.811616	6.40E-51	-1.69E-46
MS.gene056553	MS.gene72203	0.803352	3.63E-49	-1.69E-46
MS.gene056595	MS.gene72203	0.800743	1.25E-48	-1.69E-46
MS.gene056643	MS.gene72203	0.807505	4.89E-50	-1.69E-46
MS.gene056760	MS.gene72203	0.82104	4.99E-53	-1.69E-46
MS.gene057057	MS.gene72203	0.804524	2.07E-49	-1.69E-46
MS.gene057060	MS.gene72203	0.847533	1.09E-59	-1.69E-46
MS.gene057444	MS.gene72203	0.810776	9.74E-51	-1.69E-46
MS.gene057693	MS.gene72203	0.848063	7.78E-60	-1.69E-46
MS.gene058084	MS.gene72203	0.807723	4.40E-50	-1.69E-46
MS.gene058168	MS.gene72203	0.832217	1.07E-55	-1.69E-46
MS.gene058625	MS.gene72203	0.803726	3.04E-49	-1.69E-46
MS.gene058906	MS.gene72203	0.804302	2.31E-49	-1.69E-46
MS.gene059006	MS.gene72203	0.836072	1.16E-56	-1.69E-46
MS.gene059151	MS.gene72203	0.811197	7.90E-51	-1.69E-46
MS.gene05954	MS.gene72203	0.806369	8.51E-50	-1.69E-46
MS.gene059607	MS.gene72203	0.805494	1.30E-49	-1.69E-46
MS.gene059842	MS.gene72203	0.822067	2.89E-53	-1.69E-46
MS.gene059937	MS.gene72203	0.835686	1.45E-56	-1.69E-46
MS.gene060137	MS.gene72203	-0.813856	2.07E-51	-1.69E-46
MS.gene060322	MS.gene72203	0.820365	7.13E-53	-1.69E-46
MS.gene060429	MS.gene72203	0.840474	8.51E-58	-1.69E-46
MS.gene060587	MS.gene72203	0.810399	1.17E-50	-1.69E-46
MS.gene060802	MS.gene72203	0.80943	1.90E-50	-1.69E-46
MS.gene060803	MS.gene72203	0.861524	9.66E-64	-1.69E-46
MS.gene060907	MS.gene72203	0.802133	6.48E-49	-1.69E-46
MS.gene061176	MS.gene72203	0.810468	1.14E-50	-1.69E-46
MS.gene061177	MS.gene72203	0.810276	1.25E-50	-1.69E-46
MS.gene061178	MS.gene72203	0.810107	1.36E-50	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72203.t1	MTR_1g060990	99.052	211	2	0	1	211	301	511	5.53e-155	439
MS.gene72203.t1	MTR_1g098900	40.000	70	42	0	1	70	288	357	5.27e-12	64.7
MS.gene72203.t1	MTR_1g492790	36.000	75	47	1	1	74	311	385	6.99e-12	64.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene72203.t1	AT3G10000	36.771	223	116	7	1	211	261	470	4.17e-30	115
MS.gene72203.t1	AT3G10000	36.771	223	116	7	1	211	271	480	4.93e-30	115
MS.gene72203.t1	AT5G03680	45.000	120	61	2	1	115	302	421	8.46e-25	101
MS.gene72203.t1	AT1G76880	42.857	70	40	0	1	70	262	331	8.63e-11	61.2

Find 0 sgRNAs with CRISPR-Local

Find 49 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATTCAAAATCAAAATGAAGA+TGG	+	6964:5677-5696	MS.gene72203:CDS	20.0%
!!	TTCAAAATCAAAATGAAGAT+GGG	+	6964:5678-5697	MS.gene72203:CDS	20.0%
!!	ATGATTCTAAAGAAGGAAAT+AGG	+	6964:5753-5772	MS.gene72203:CDS	25.0%
!!	TGGAAAAAGAACAAAAGTTT+TGG	+	6964:5519-5538	MS.gene72203:CDS	25.0%
	AAACTACAAAGGAATGATCA+TGG	+	6964:5878-5897	MS.gene72203:CDS	30.0%
	AATGTTGGAAATGTTGCTAA+TGG	+	6964:5920-5939	MS.gene72203:CDS	30.0%
	AGAAATGATTAAGGTTGAAG+AGG	+	6964:5613-5632	MS.gene72203:CDS	30.0%
	ATGAGATTGTGAAACTACAA+AGG	+	6964:5867-5886	MS.gene72203:CDS	30.0%
	TTCTGATAATTGTACTCCAA+GGG	+	6964:5730-5749	MS.gene72203:CDS	30.0%
	TTTCCAACATTAGAATCAGA+AGG	-	6964:5911-5930	MS.gene72203:intergenic	30.0%
	TTTCCTTTCATGATTAGTGA+GGG	+	6964:5953-5972	MS.gene72203:CDS	30.0%
!	AAGGGTGTAAATGTAATAAC+TGG	+	6964:5647-5666	MS.gene72203:CDS	30.0%
!!	ATGGAAGCTTTGAAGAATTT+AGG	+	6964:5584-5603	MS.gene72203:CDS	30.0%
	AGAAGGAAATAGGAAGAGAA+AGG	+	6964:5763-5782	MS.gene72203:CDS	35.0%
	AGGAGGTAGAGAAATGATTA+AGG	+	6964:5604-5623	MS.gene72203:CDS	35.0%
	ATCTTGAATAGTACTGTGAG+AGG	+	6964:5707-5726	MS.gene72203:CDS	35.0%
	CAATGCTCTATGTACAATCA+AGG	+	6964:5812-5831	MS.gene72203:CDS	35.0%
	CTTTCCTTTCATGATTAGTG+AGG	+	6964:5952-5971	MS.gene72203:CDS	35.0%
	GTTCTGATAATTGTACTCCA+AGG	+	6964:5729-5748	MS.gene72203:CDS	35.0%
	TCACCTTCTGATTCTAATGT+TGG	+	6964:5905-5924	MS.gene72203:CDS	35.0%
	TCTATGTACAATCAAGGAAG+TGG	+	6964:5818-5837	MS.gene72203:CDS	35.0%
!	GGAAATTTGTGGGAGAATTT+TGG	+	6964:5977-5996	MS.gene72203:CDS	35.0%
!	TTGTTCTTTTTCCACCCTTT+TGG	-	6964:5513-5532	MS.gene72203:intergenic	35.0%
!!	GAAGCTTTGAAGAATTTAGG+AGG	+	6964:5587-5606	MS.gene72203:CDS	35.0%
	GAAGAGGCTCATGATCATAA+GGG	+	6964:5629-5648	MS.gene72203:CDS	40.0%
	TAAGCTTGTGAAGACACTTG+AGG	+	6964:5436-5455	MS.gene72203:CDS	40.0%
	TAGTGAGGGTGGAAATTTGT+GGG	+	6964:5967-5986	MS.gene72203:CDS	40.0%
	TGAAGAGGCTCATGATCATA+AGG	+	6964:5628-5647	MS.gene72203:CDS	40.0%
	TTAGTGAGGGTGGAAATTTG+TGG	+	6964:5966-5985	MS.gene72203:CDS	40.0%
!	CCAAGGGATGATTCTAAAGA+AGG	+	6964:5746-5765	MS.gene72203:CDS	40.0%
!	TTTGGAGTAATGAGAGAGCA+TGG	+	6964:5537-5556	MS.gene72203:CDS	40.0%
!!	CCTTCTTTAGAATCATCCCT+TGG	-	6964:5749-5768	MS.gene72203:intergenic	40.0%
	AGAAGAGTGGAGGAAACAAG+AGG	+	6964:5487-5506	MS.gene72203:CDS	45.0%
	CCACCCTCACTAATCATGAA+AGG	-	6964:5959-5978	MS.gene72203:intergenic	45.0%
	CCTTTCATGATTAGTGAGGG+TGG	+	6964:5956-5975	MS.gene72203:CDS	45.0%
	CGTTAAGAGAAGAAGAGTGG+AGG	+	6964:5477-5496	MS.gene72203:CDS	45.0%
	GACACTTGAGGACAAGGAAA+AGG	+	6964:5448-5467	MS.gene72203:CDS	45.0%
	GAGGAAACAAGAGGCCAAAA+GGG	+	6964:5496-5515	MS.gene72203:CDS	45.0%
	TGAGGACAAGGAAAAGGAGA+GGG	+	6964:5454-5473	MS.gene72203:CDS	45.0%
	TGTGAAGACACTTGAGGACA+AGG	+	6964:5442-5461	MS.gene72203:CDS	45.0%
	TTGAGGACAAGGAAAAGGAG+AGG	+	6964:5453-5472	MS.gene72203:CDS	45.0%
!	AGAGAGCATGGATTGAAGCA+AGG	+	6964:5549-5568	MS.gene72203:CDS	45.0%
!	GAGAGCATGGATTGAAGCAA+GGG	+	6964:5550-5569	MS.gene72203:CDS	45.0%
!!	AGCAAGGGATGCTGCTTTAA+TGG	+	6964:5565-5584	MS.gene72203:CDS	45.0%
	GAAACAAGAGGCCAAAAGGG+TGG	+	6964:5499-5518	MS.gene72203:CDS	50.0%
	GAAGCTTGTGGAGAAGCAAG+AGG	+	6964:5403-5422	MS.gene72203:CDS	50.0%
	GGAGGAAACAAGAGGCCAAA+AGG	+	6964:5495-5514	MS.gene72203:CDS	50.0%
	GGGCGTTAAGAGAAGAAGAG+TGG	+	6964:5474-5493	MS.gene72203:CDS	50.0%
	TTGTGGAGAAGCAAGAGGAG+TGG	+	6964:5408-5427	MS.gene72203:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
6964	gene	5398	6033	5398	ID=MS.gene72203
6964	mRNA	5398	6033	5398	ID=MS.gene72203.t1;Parent=MS.gene72203
6964	exon	5398	6033	5398	ID=MS.gene72203.t1.exon1;Parent=MS.gene72203.t1
6964	CDS	5398	6033	5398	ID=cds.MS.gene72203.t1;Parent=MS.gene72203.t1

Gene Sequence

>MS.gene72203

ATGAAGAAGCTTGTGGAGAAGCAAGAGGAGTGGTTGAGTAAGCTTGTGAAGACACTTGAGGACAAGGAAAAGGAGAGGGCGTTAAGAGAAGAAGAGTGGAGGAAACAAGAGGCCAAAAGGGTGGAAAAAGAACAAAAGTTTTGGAGTAATGAGAGAGCATGGATTGAAGCAAGGGATGCTGCTTTAATGGAAGCTTTGAAGAATTTAGGAGGTAGAGAAATGATTAAGGTTGAAGAGGCTCATGATCATAAGGGTGTAAATGTAATAACTGGAGCAGAGATTCAAAATCAAAATGAAGATGGGAGTGAAATCTTGAATAGTACTGTGAGAGGTTCTGATAATTGTACTCCAAGGGATGATTCTAAAGAAGGAAATAGGAAGAGAAAGGAGAGTTTTTACTTCAACAATAATGAACAATGCTCTATGTACAATCAAGGAAGTGGTTATTGTGATGTTAATGATCAAAGAGATGAGATTGTGAAACTACAAAGGAATGATCATGGTTCTTCACCTTCTGATTCTAATGTTGGAAATGTTGCTAATGGTGATACTTGCTTTCCTTTCATGATTAGTGAGGGTGGAAATTTGTGGGAGAATTTTGGCTTGAAGATCAATAAAGTAAACCAAAACCATTAA

Protein sequence

>MS.gene72203.t1

MKKLVEKQEEWLSKLVKTLEDKEKERALREEEWRKQEAKRVEKEQKFWSNERAWIEARDAALMEALKNLGGREMIKVEEAHDHKGVNVITGAEIQNQNEDGSEILNSTVRGSDNCTPRDDSKEGNRKRKESFYFNNNEQCSMYNQGSGYCDVNDQRDEIVKLQRNDHGSSPSDSNVGNVANGDTCFPFMISEGGNLWENFGLKINKVNQNH