Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72858.t1 | XP_003612642.1 | 96.5 | 311 | 11 | 0 | 2 | 312 | 1 | 311 | 2.30E-169 | 604.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72858.t1 | P52581 | 83.6 | 311 | 50 | 1 | 2 | 311 | 1 | 311 | 4.5e-153 | 542.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72858.t1 | B7FI60 | 96.5 | 311 | 11 | 0 | 2 | 312 | 1 | 311 | 1.7e-169 | 604.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene72858 | 0.818109 | 2.33E-52 | -1.69E-46 |
| MS.gene049153 | MS.gene72858 | 0.816153 | 6.41E-52 | -1.69E-46 |
| MS.gene049351 | MS.gene72858 | 0.830068 | 3.62E-55 | -1.69E-46 |
| MS.gene049356 | MS.gene72858 | 0.871613 | 5.98E-67 | -1.69E-46 |
| MS.gene049369 | MS.gene72858 | 0.826338 | 2.87E-54 | -1.69E-46 |
| MS.gene049661 | MS.gene72858 | 0.800592 | 1.34E-48 | -1.69E-46 |
| MS.gene049758 | MS.gene72858 | 0.841291 | 5.19E-58 | -1.69E-46 |
| MS.gene049907 | MS.gene72858 | 0.803221 | 3.87E-49 | -1.69E-46 |
| MS.gene050128 | MS.gene72858 | 0.836364 | 9.77E-57 | -1.69E-46 |
| MS.gene050301 | MS.gene72858 | 0.86173 | 8.35E-64 | -1.69E-46 |
| MS.gene050397 | MS.gene72858 | 0.814957 | 1.18E-51 | -1.69E-46 |
| MS.gene050432 | MS.gene72858 | 0.858491 | 7.94E-63 | -1.69E-46 |
| MS.gene050520 | MS.gene72858 | 0.833797 | 4.34E-56 | -1.69E-46 |
| MS.gene050670 | MS.gene72858 | 0.829416 | 5.21E-55 | -1.69E-46 |
| MS.gene050971 | MS.gene72858 | 0.80184 | 7.45E-49 | -1.69E-46 |
| MS.gene05105 | MS.gene72858 | 0.821297 | 4.35E-53 | -1.69E-46 |
| MS.gene051255 | MS.gene72858 | 0.848742 | 5.05E-60 | -1.69E-46 |
| MS.gene051360 | MS.gene72858 | 0.8458 | 3.24E-59 | -1.69E-46 |
| MS.gene051387 | MS.gene72858 | 0.808679 | 2.75E-50 | -1.69E-46 |
| MS.gene051860 | MS.gene72858 | 0.83565 | 1.48E-56 | -1.69E-46 |
| MS.gene052078 | MS.gene72858 | 0.815615 | 8.44E-52 | -1.69E-46 |
| MS.gene052178 | MS.gene72858 | 0.813392 | 2.62E-51 | -1.69E-46 |
| MS.gene052188 | MS.gene72858 | 0.868626 | 5.68E-66 | -1.69E-46 |
| MS.gene052253 | MS.gene72858 | 0.835305 | 1.81E-56 | -1.69E-46 |
| MS.gene052310 | MS.gene72858 | 0.836239 | 1.05E-56 | -1.69E-46 |
| MS.gene052340 | MS.gene72858 | 0.850663 | 1.47E-60 | -1.69E-46 |
| MS.gene052414 | MS.gene72858 | 0.801329 | 9.48E-49 | -1.69E-46 |
| MS.gene052485 | MS.gene72858 | 0.848844 | 4.73E-60 | -1.69E-46 |
| MS.gene052999 | MS.gene72858 | 0.8083 | 3.31E-50 | -1.69E-46 |
| MS.gene053169 | MS.gene72858 | 0.811217 | 7.82E-51 | -1.69E-46 |
| MS.gene05316 | MS.gene72858 | 0.839966 | 1.15E-57 | -1.69E-46 |
| MS.gene053209 | MS.gene72858 | 0.853547 | 2.22E-61 | -1.69E-46 |
| MS.gene053449 | MS.gene72858 | 0.814933 | 1.20E-51 | -1.69E-46 |
| MS.gene053557 | MS.gene72858 | 0.812491 | 4.13E-51 | -1.69E-46 |
| MS.gene053758 | MS.gene72858 | 0.81409 | 1.84E-51 | -1.69E-46 |
| MS.gene053813 | MS.gene72858 | 0.850753 | 1.39E-60 | -1.69E-46 |
| MS.gene053836 | MS.gene72858 | 0.842532 | 2.44E-58 | -1.69E-46 |
| MS.gene053928 | MS.gene72858 | 0.852106 | 5.74E-61 | -1.69E-46 |
| MS.gene054010 | MS.gene72858 | 0.818622 | 1.78E-52 | -1.69E-46 |
| MS.gene054011 | MS.gene72858 | 0.811878 | 5.62E-51 | -1.69E-46 |
| MS.gene054012 | MS.gene72858 | 0.813967 | 1.96E-51 | -1.69E-46 |
| MS.gene054013 | MS.gene72858 | 0.814604 | 1.42E-51 | -1.69E-46 |
| MS.gene054123 | MS.gene72858 | 0.839017 | 2.04E-57 | -1.69E-46 |
| MS.gene054349 | MS.gene72858 | 0.809124 | 2.21E-50 | -1.69E-46 |
| MS.gene054556 | MS.gene72858 | 0.838681 | 2.49E-57 | -1.69E-46 |
| MS.gene055116 | MS.gene72858 | 0.842549 | 2.42E-58 | -1.69E-46 |
| MS.gene055277 | MS.gene72858 | 0.85453 | 1.16E-61 | -1.69E-46 |
| MS.gene055390 | MS.gene72858 | 0.840095 | 1.07E-57 | -1.69E-46 |
| MS.gene055422 | MS.gene72858 | 0.832737 | 7.97E-56 | -1.69E-46 |
| MS.gene055428 | MS.gene72858 | 0.829716 | 4.41E-55 | -1.69E-46 |
| MS.gene055604 | MS.gene72858 | 0.833603 | 4.85E-56 | -1.69E-46 |
| MS.gene055666 | MS.gene72858 | 0.865739 | 4.75E-65 | -1.69E-46 |
| MS.gene055909 | MS.gene72858 | 0.807042 | 6.13E-50 | -1.69E-46 |
| MS.gene055911 | MS.gene72858 | 0.8149 | 1.22E-51 | -1.69E-46 |
| MS.gene056191 | MS.gene72858 | 0.817524 | 3.15E-52 | -1.69E-46 |
| MS.gene056407 | MS.gene72858 | 0.866556 | 2.62E-65 | -1.69E-46 |
| MS.gene056410 | MS.gene72858 | 0.835878 | 1.30E-56 | -1.69E-46 |
| MS.gene056422 | MS.gene72858 | 0.816847 | 4.48E-52 | -1.69E-46 |
| MS.gene056511 | MS.gene72858 | 0.835476 | 1.64E-56 | -1.69E-46 |
| MS.gene056609 | MS.gene72858 | 0.814686 | 1.36E-51 | -1.69E-46 |
| MS.gene056659 | MS.gene72858 | 0.81601 | 6.89E-52 | -1.69E-46 |
| MS.gene056902 | MS.gene72858 | 0.837054 | 6.52E-57 | -1.69E-46 |
| MS.gene05702 | MS.gene72858 | 0.814157 | 1.78E-51 | -1.69E-46 |
| MS.gene057124 | MS.gene72858 | 0.820123 | 8.10E-53 | -1.69E-46 |
| MS.gene057396 | MS.gene72858 | 0.821064 | 4.93E-53 | -1.69E-46 |
| MS.gene057448 | MS.gene72858 | 0.881779 | 1.81E-70 | -1.69E-46 |
| MS.gene057449 | MS.gene72858 | 0.871997 | 4.46E-67 | -1.69E-46 |
| MS.gene057450 | MS.gene72858 | 0.880789 | 4.11E-70 | -1.69E-46 |
| MS.gene057469 | MS.gene72858 | 0.834861 | 2.35E-56 | -1.69E-46 |
| MS.gene057537 | MS.gene72858 | 0.826452 | 2.69E-54 | -1.69E-46 |
| MS.gene057749 | MS.gene72858 | 0.864429 | 1.22E-64 | -1.69E-46 |
| MS.gene057823 | MS.gene72858 | 0.861975 | 7.03E-64 | -1.69E-46 |
| MS.gene057825 | MS.gene72858 | 0.800666 | 1.30E-48 | -1.69E-46 |
| MS.gene057927 | MS.gene72858 | 0.828236 | 1.01E-54 | -1.69E-46 |
| MS.gene058002 | MS.gene72858 | 0.848036 | 7.91E-60 | -1.69E-46 |
| MS.gene05811 | MS.gene72858 | 0.857318 | 1.77E-62 | -1.69E-46 |
| MS.gene058293 | MS.gene72858 | 0.83906 | 1.99E-57 | -1.69E-46 |
| MS.gene058365 | MS.gene72858 | 0.830714 | 2.51E-55 | -1.69E-46 |
| MS.gene05842 | MS.gene72858 | 0.824969 | 6.05E-54 | -1.69E-46 |
| MS.gene058660 | MS.gene72858 | 0.82919 | 5.91E-55 | -1.69E-46 |
| MS.gene058700 | MS.gene72858 | 0.800029 | 1.75E-48 | -1.69E-46 |
| MS.gene05886 | MS.gene72858 | 0.817391 | 3.38E-52 | -1.69E-46 |
| MS.gene058928 | MS.gene72858 | 0.841896 | 3.60E-58 | -1.69E-46 |
| MS.gene058948 | MS.gene72858 | 0.819989 | 8.69E-53 | -1.69E-46 |
| MS.gene058949 | MS.gene72858 | 0.85693 | 2.31E-62 | -1.69E-46 |
| MS.gene05907 | MS.gene72858 | 0.875304 | 3.42E-68 | -1.69E-46 |
| MS.gene059285 | MS.gene72858 | 0.810339 | 1.21E-50 | -1.69E-46 |
| MS.gene059294 | MS.gene72858 | 0.823025 | 1.73E-53 | -1.69E-46 |
| MS.gene059366 | MS.gene72858 | 0.840892 | 6.61E-58 | -1.69E-46 |
| MS.gene059420 | MS.gene72858 | 0.856906 | 2.34E-62 | -1.69E-46 |
| MS.gene059518 | MS.gene72858 | 0.805339 | 1.40E-49 | -1.69E-46 |
| MS.gene059597 | MS.gene72858 | 0.827318 | 1.67E-54 | -1.69E-46 |
| MS.gene05959 | MS.gene72858 | 0.828545 | 8.47E-55 | -1.69E-46 |
| MS.gene059674 | MS.gene72858 | 0.82406 | 9.90E-54 | -1.69E-46 |
| MS.gene059676 | MS.gene72858 | 0.861987 | 6.97E-64 | -1.69E-46 |
| MS.gene059688 | MS.gene72858 | 0.845189 | 4.74E-59 | -1.69E-46 |
| MS.gene059692 | MS.gene72858 | 0.845101 | 5.01E-59 | -1.69E-46 |
| MS.gene059695 | MS.gene72858 | 0.840755 | 7.18E-58 | -1.69E-46 |
| MS.gene059708 | MS.gene72858 | 0.80372 | 3.05E-49 | -1.69E-46 |
| MS.gene059711 | MS.gene72858 | 0.846449 | 2.16E-59 | -1.69E-46 |
| MS.gene059807 | MS.gene72858 | 0.845446 | 4.04E-59 | -1.69E-46 |
| MS.gene05984 | MS.gene72858 | 0.835155 | 1.98E-56 | -1.69E-46 |
| MS.gene05986 | MS.gene72858 | 0.816925 | 4.30E-52 | -1.69E-46 |
| MS.gene059894 | MS.gene72858 | 0.819387 | 1.19E-52 | -1.69E-46 |
| MS.gene059974 | MS.gene72858 | 0.857826 | 1.25E-62 | -1.69E-46 |
| MS.gene060005 | MS.gene72858 | 0.843133 | 1.69E-58 | -1.69E-46 |
| MS.gene06037 | MS.gene72858 | 0.846402 | 2.22E-59 | -1.69E-46 |
| MS.gene060403 | MS.gene72858 | 0.813878 | 2.05E-51 | -1.69E-46 |
| MS.gene060407 | MS.gene72858 | 0.802535 | 5.36E-49 | -1.69E-46 |
| MS.gene060495 | MS.gene72858 | 0.827003 | 1.99E-54 | -1.69E-46 |
| MS.gene060569 | MS.gene72858 | 0.820051 | 8.41E-53 | -1.69E-46 |
| MS.gene060804 | MS.gene72858 | 0.804457 | 2.14E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene72858 | 0.852612 | 4.12E-61 | -1.69E-46 |
| MS.gene060986 | MS.gene72858 | 0.824183 | 9.26E-54 | -1.69E-46 |
| MS.gene061049 | MS.gene72858 | 0.837038 | 6.58E-57 | -1.69E-46 |
| MS.gene061051 | MS.gene72858 | -0.859394 | 4.26E-63 | -1.69E-46 |
| MS.gene061154 | MS.gene72858 | 0.856955 | 2.27E-62 | -1.69E-46 |
| MS.gene061159 | MS.gene72858 | 0.816718 | 4.79E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72858.t1 | MTR_5g027290 | 96.463 | 311 | 11 | 0 | 2 | 312 | 1 | 311 | 0.0 | 623 |
| MS.gene72858.t1 | MTR_5g027240 | 94.212 | 311 | 18 | 0 | 2 | 312 | 1 | 311 | 0.0 | 613 |
| MS.gene72858.t1 | MTR_8g071130 | 75.884 | 311 | 74 | 1 | 2 | 311 | 1 | 311 | 1.52e-180 | 501 |
| MS.gene72858.t1 | MTR_5g020740 | 48.232 | 311 | 153 | 3 | 3 | 311 | 4 | 308 | 2.24e-95 | 285 |
| MS.gene72858.t1 | MTR_3g111980 | 47.756 | 312 | 153 | 4 | 1 | 308 | 1 | 306 | 3.34e-95 | 284 |
| MS.gene72858.t1 | MTR_3g111990 | 46.774 | 310 | 157 | 3 | 1 | 308 | 1 | 304 | 1.34e-93 | 280 |
| MS.gene72858.t1 | MTR_3g116840 | 47.573 | 309 | 154 | 4 | 5 | 311 | 9 | 311 | 6.52e-91 | 273 |
| MS.gene72858.t1 | MTR_4g070370 | 42.903 | 310 | 169 | 3 | 2 | 309 | 5 | 308 | 7.70e-82 | 251 |
| MS.gene72858.t1 | MTR_5g020760 | 40.248 | 323 | 175 | 4 | 1 | 311 | 1 | 317 | 1.03e-77 | 240 |
| MS.gene72858.t1 | MTR_5g020800 | 40.248 | 323 | 175 | 4 | 1 | 311 | 1 | 317 | 1.30e-77 | 239 |
| MS.gene72858.t1 | MTR_4g070360 | 41.290 | 310 | 174 | 3 | 2 | 308 | 1 | 305 | 1.71e-75 | 234 |
| MS.gene72858.t1 | MTR_5g020760 | 43.911 | 271 | 135 | 3 | 1 | 260 | 1 | 265 | 1.84e-74 | 230 |
| MS.gene72858.t1 | MTR_3g008100 | 41.290 | 310 | 164 | 7 | 4 | 308 | 5 | 301 | 3.30e-74 | 231 |
| MS.gene72858.t1 | MTR_4g070340 | 39.088 | 307 | 179 | 3 | 5 | 309 | 7 | 307 | 4.06e-73 | 228 |
| MS.gene72858.t1 | MTR_3g008100 | 40.645 | 310 | 159 | 7 | 4 | 308 | 5 | 294 | 3.27e-71 | 223 |
| MS.gene72858.t1 | MTR_3g007970 | 41.424 | 309 | 165 | 7 | 4 | 308 | 5 | 301 | 7.79e-70 | 219 |
| MS.gene72858.t1 | MTR_3g008140 | 40.000 | 310 | 169 | 8 | 3 | 308 | 4 | 300 | 3.12e-69 | 218 |
| MS.gene72858.t1 | MTR_4g070340 | 38.436 | 307 | 176 | 4 | 5 | 309 | 7 | 302 | 3.38e-69 | 218 |
| MS.gene72858.t1 | MTR_4g070340 | 39.200 | 250 | 144 | 3 | 62 | 309 | 15 | 258 | 1.95e-56 | 184 |
| MS.gene72858.t1 | MTR_1g093720 | 32.381 | 315 | 200 | 6 | 2 | 311 | 11 | 317 | 3.00e-55 | 183 |
| MS.gene72858.t1 | MTR_3g008100 | 42.211 | 199 | 98 | 6 | 4 | 198 | 5 | 190 | 3.56e-42 | 146 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72858.t1 | AT1G32100 | 68.608 | 309 | 97 | 0 | 3 | 311 | 8 | 316 | 4.13e-168 | 469 |
| MS.gene72858.t1 | AT4G13660 | 67.638 | 309 | 100 | 0 | 3 | 311 | 8 | 316 | 1.79e-162 | 455 |
| MS.gene72858.t1 | AT4G13660 | 67.638 | 309 | 100 | 0 | 3 | 311 | 8 | 316 | 1.79e-162 | 455 |
| MS.gene72858.t1 | AT1G75290 | 46.178 | 314 | 159 | 4 | 3 | 312 | 4 | 311 | 5.78e-91 | 274 |
| MS.gene72858.t1 | AT1G75290 | 46.178 | 314 | 159 | 4 | 3 | 312 | 31 | 338 | 1.45e-90 | 274 |
| MS.gene72858.t1 | AT1G75280 | 46.178 | 314 | 158 | 5 | 3 | 312 | 4 | 310 | 3.25e-89 | 269 |
| MS.gene72858.t1 | AT1G75300 | 45.015 | 331 | 147 | 7 | 3 | 311 | 4 | 321 | 2.53e-85 | 259 |
| MS.gene72858.t1 | AT4G39230 | 44.268 | 314 | 165 | 4 | 1 | 311 | 1 | 307 | 1.63e-84 | 257 |
| MS.gene72858.t1 | AT1G19540 | 44.051 | 311 | 166 | 4 | 5 | 311 | 3 | 309 | 2.31e-79 | 244 |
| MS.gene72858.t1 | AT1G19540 | 45.736 | 258 | 134 | 3 | 5 | 260 | 3 | 256 | 7.01e-70 | 218 |
| MS.gene72858.t1 | AT4G34540 | 38.019 | 313 | 171 | 5 | 3 | 308 | 6 | 302 | 3.33e-65 | 207 |
Find 74 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTTCCTACCTTCAGAATT+TGG | 0.100954 | 5.1:-17782039 | MS.gene72858:CDS |
| TGGGATGGACCCAGCTCTTA+TGG | 0.218113 | 5.1:-17782019 | MS.gene72858:CDS |
| GACGTTCTCTGCATCCTTGA+TGG | 0.243342 | 5.1:+17784737 | None:intergenic |
| GTTTGTGGCAGTTGTTTATA+TGG | 0.279757 | 5.1:-17781689 | MS.gene72858:intron |
| TCATCAAATGTGACTCTTCC+TGG | 0.296978 | 5.1:+17781982 | None:intergenic |
| AGTCACATTTGATGATAAAA+TGG | 0.301575 | 5.1:-17781974 | MS.gene72858:CDS |
| AAGAAAGTCTTGTTCGGATA+TGG | 0.342755 | 5.1:+17781510 | None:intergenic |
| AAAGAGAGCTAGTTGAGAAA+TGG | 0.344521 | 5.1:-17781567 | MS.gene72858:CDS |
| GTTTCCTACCTTCAGAATTT+GGG | 0.347946 | 5.1:-17782038 | MS.gene72858:CDS |
| GTACTTCAACGTCCAGATAT+AGG | 0.348370 | 5.1:-17784948 | MS.gene72858:CDS |
| TTGATGATAAAATGGCTATA+AGG | 0.354465 | 5.1:-17781966 | MS.gene72858:CDS |
| TACTTCAACGTCCAGATATA+GGG | 0.362547 | 5.1:-17784947 | MS.gene72858:CDS |
| CGGGACAAGGTTGTTCTCTA+TGG | 0.363088 | 5.1:-17781838 | MS.gene72858:CDS |
| AAGAGAGCTAGTTGAGAAAT+GGG | 0.369973 | 5.1:-17781566 | MS.gene72858:CDS |
| TCAGTATCAAGCCCTATATC+TGG | 0.384832 | 5.1:+17784936 | None:intergenic |
| TGAACAAGACAATATATATA+AGG | 0.385377 | 5.1:-17781612 | MS.gene72858:CDS |
| TGTTTCGCGGGCTACTTTGC+CGG | 0.387206 | 5.1:-17781895 | MS.gene72858:CDS |
| AATGCAGGTTTGGACCTTGC+AGG | 0.388018 | 5.1:-17781389 | MS.gene72858:intron |
| GAGAAATGGGAGAAACTTAC+TGG | 0.391209 | 5.1:-17781553 | MS.gene72858:CDS |
| GGGATGGACCCAGCTCTTAT+GGG | 0.395550 | 5.1:-17782018 | MS.gene72858:CDS |
| TGCCGGTAACCTGTCTCAAA+TGG | 0.400001 | 5.1:-17781878 | MS.gene72858:CDS |
| GTTGTTATTTGCACCATGTC+TGG | 0.405325 | 5.1:-17784810 | MS.gene72858:CDS |
| TCCCATTTGAGACAGGTTAC+CGG | 0.421595 | 5.1:+17781876 | None:intergenic |
| CTTCTTTCATTCAAGAAACT+AGG | 0.431002 | 5.1:-17784900 | MS.gene72858:CDS |
| AGAAATGCCCCACTGCTACT+TGG | 0.458358 | 5.1:+17781366 | None:intergenic |
| ATTGTCTTGTTCAACGTTCG+AGG | 0.459458 | 5.1:+17781622 | None:intergenic |
| ATGCGTGTGTATTGCACCTC+TGG | 0.472227 | 5.1:+17781272 | None:intergenic |
| CATCTCCGCCAACTGTTTCG+CGG | 0.474425 | 5.1:-17781908 | MS.gene72858:CDS |
| CAAACTTATTGAAGCCATCA+AGG | 0.492205 | 5.1:-17784751 | MS.gene72858:CDS |
| GGCTATAAGGAAAGCAATTG+AGG | 0.493105 | 5.1:-17781953 | MS.gene72858:CDS |
| GCCGGTAACCTGTCTCAAAT+GGG | 0.494459 | 5.1:-17781877 | MS.gene72858:CDS |
| ATCTCCGCCAACTGTTTCGC+GGG | 0.497080 | 5.1:-17781907 | MS.gene72858:CDS |
| CCACTGCTACTTGGCCTGCA+AGG | 0.498308 | 5.1:+17781375 | None:intergenic |
| AAGAGCAAGGTTCTAGTTGT+GGG | 0.501694 | 5.1:-17785035 | MS.gene72858:CDS |
| GGAAGAAAGAAAGTCTTGTT+CGG | 0.504559 | 5.1:+17781504 | None:intergenic |
| AGTGCATGTCCCATAAGAGC+TGG | 0.509909 | 5.1:+17782009 | None:intergenic |
| GACTTTCTTTCTTCCATGAA+AGG | 0.513933 | 5.1:-17781496 | MS.gene72858:intron |
| AGAGTGTTCCCATTTGAGAC+AGG | 0.514663 | 5.1:+17781869 | None:intergenic |
| AAAGTAGCCCGCGAAACAGT+TGG | 0.525770 | 5.1:+17781900 | None:intergenic |
| ACTCTTTCCTCCACGGGACA+AGG | 0.528622 | 5.1:-17781851 | MS.gene72858:CDS |
| CCTTGCAGGCCAAGTAGCAG+TGG | 0.542585 | 5.1:-17781375 | MS.gene72858:CDS |
| AAAGAGCAAGGTTCTAGTTG+TGG | 0.546360 | 5.1:-17785036 | MS.gene72858:CDS |
| GGGAACACTCTTTCCTCCAC+GGG | 0.550398 | 5.1:-17781857 | MS.gene72858:CDS |
| GAAACTAGGTGCTCATCTTG+TGG | 0.554098 | 5.1:-17784886 | MS.gene72858:CDS |
| GATGTAAGTGAAAGGGATGT+TGG | 0.555898 | 5.1:+17781927 | None:intergenic |
| CTTGCAGGCCAAGTAGCAGT+GGG | 0.566660 | 5.1:-17781374 | MS.gene72858:CDS |
| TTGGCGGAGATGTAAGTGAA+AGG | 0.566709 | 5.1:+17781919 | None:intergenic |
| ATGGGACATGCACTTGAACC+AGG | 0.574655 | 5.1:-17782000 | MS.gene72858:CDS |
| TGGCGGAGATGTAAGTGAAA+GGG | 0.576732 | 5.1:+17781920 | None:intergenic |
| CCTACCTTCAGAATTTGGGA+TGG | 0.579461 | 5.1:-17782034 | MS.gene72858:CDS |
| AACGATGATGGAAAAGAGCA+AGG | 0.585621 | 5.1:-17785048 | None:intergenic |
| TGGGAACACTCTTTCCTCCA+CGG | 0.593133 | 5.1:-17781858 | MS.gene72858:CDS |
| CAACTAGCTCTCTTTGAGTG+AGG | 0.596234 | 5.1:+17781575 | None:intergenic |
| GAGCAAGGTTCTAGTTGTGG+GGG | 0.596468 | 5.1:-17785033 | MS.gene72858:CDS |
| GGGGTACTGGGTATATTGGT+AGG | 0.599217 | 5.1:-17785013 | MS.gene72858:CDS |
| CTAGGTGCTCATCTTGTGGA+AGG | 0.605859 | 5.1:-17784882 | MS.gene72858:CDS |
| CCATCCCAAATTCTGAAGGT+AGG | 0.607236 | 5.1:+17782034 | None:intergenic |
| GTGCATGTCCCATAAGAGCT+GGG | 0.609221 | 5.1:+17782010 | None:intergenic |
| TATGGCGACGGTAATGTCAA+AGG | 0.611140 | 5.1:-17781820 | MS.gene72858:intron |
| TCGAAAATGAACTCCAGACA+TGG | 0.615339 | 5.1:+17784797 | None:intergenic |
| AGAGGTGCAATACACACGCA+TGG | 0.626180 | 5.1:-17781270 | MS.gene72858:CDS |
| TATTGGTAGGAGAATAGTGA+AGG | 0.627838 | 5.1:-17785000 | MS.gene72858:CDS |
| GGGTCCATCCCAAATTCTGA+AGG | 0.629741 | 5.1:+17782030 | None:intergenic |
| AAGGTTGTTCTCTATGGCGA+CGG | 0.632761 | 5.1:-17781832 | MS.gene72858:CDS |
| TAGAGAACAACCTTGTCCCG+TGG | 0.639980 | 5.1:+17781841 | None:intergenic |
| GTGAAGGCAAGTTTAGAACA+AGG | 0.641128 | 5.1:-17784984 | MS.gene72858:CDS |
| AGAGCAAGGTTCTAGTTGTG+GGG | 0.642111 | 5.1:-17785034 | MS.gene72858:CDS |
| AGCATCAAAGCTTTATCCAG+AGG | 0.647566 | 5.1:-17781288 | MS.gene72858:CDS |
| AGAACAACCTTGTCCCGTGG+AGG | 0.670350 | 5.1:+17781844 | None:intergenic |
| GTAGCCCGCGAAACAGTTGG+CGG | 0.675791 | 5.1:+17781903 | None:intergenic |
| CAAGGATGCAGAGAACGTCA+AGG | 0.679850 | 5.1:-17784733 | MS.gene72858:intron |
| AGCAAGGTTCTAGTTGTGGG+GGG | 0.685169 | 5.1:-17785032 | MS.gene72858:CDS |
| ATCTGGACGTTGAAGTACGT+AGG | 0.716805 | 5.1:+17784953 | None:intergenic |
| TTGCAGGCCAAGTAGCAGTG+GGG | 0.743312 | 5.1:-17781373 | MS.gene72858:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTGTTCATAAATTATAAA+GGG | - | chr5.1:17783642-17783661 | MS.gene72858:intron | 10.0% |
| !!! | TAAAAAAAAAATCATGATTT+TGG | - | chr5.1:17783424-17783443 | MS.gene72858:intron | 10.0% |
| !!! | TAATTTTATTAATGTAAAGA+TGG | + | chr5.1:17782163-17782182 | None:intergenic | 10.0% |
| !!! | TATGTGATTTTTTTTTTTTT+TGG | + | chr5.1:17781996-17782015 | None:intergenic | 10.0% |
| !! | AAAATAATAAATGACAAACT+AGG | - | chr5.1:17782426-17782445 | MS.gene72858:intron | 15.0% |
| !! | CTATTGTTCATAAATTATAA+AGG | - | chr5.1:17783641-17783660 | MS.gene72858:intron | 15.0% |
| !! | GATTTCAGATAAAAATAATA+TGG | - | chr5.1:17783673-17783692 | MS.gene72858:intron | 15.0% |
| !! | TAAATTATAAAGGGTAAAAA+TGG | - | chr5.1:17783651-17783670 | MS.gene72858:intron | 15.0% |
| !! | TTTGTTTAAGTAAGAAAAAA+AGG | + | chr5.1:17784204-17784223 | None:intergenic | 15.0% |
| !!! | AATTGTTAACTAATTTTTCT+AGG | + | chr5.1:17784504-17784523 | None:intergenic | 15.0% |
| !!! | ATGAAATAAAAGAAAGTATT+AGG | - | chr5.1:17784036-17784055 | MS.gene72858:intron | 15.0% |
| !!! | ATTGTTAACTAATTTTTCTA+GGG | + | chr5.1:17784503-17784522 | None:intergenic | 15.0% |
| !!! | TCATAAAAACTTATTTGTTT+TGG | - | chr5.1:17781931-17781950 | MS.gene72858:CDS | 15.0% |
| !!! | TTGACAATATAACTTTTTAT+AGG | + | chr5.1:17783526-17783545 | None:intergenic | 15.0% |
| !! | TGAACAAGACAATATATATA+AGG | - | chr5.1:17784676-17784695 | MS.gene72858:intron | 20.0% |
| !! | TGCAGATAACTTATAATTTA+TGG | - | chr5.1:17782474-17782493 | MS.gene72858:intron | 20.0% |
| !! | TTATAGCTATCTCTATTTAT+GGG | + | chr5.1:17782930-17782949 | None:intergenic | 20.0% |
| !!! | AAAAAAATCATGATTTTGGA+TGG | - | chr5.1:17783428-17783447 | MS.gene72858:intron | 20.0% |
| !!! | AAAAATTACACATAAGTTGA+AGG | - | chr5.1:17782891-17782910 | MS.gene72858:intron | 20.0% |
| !!! | AGCAGAGATTTAAAATTAAA+CGG | + | chr5.1:17783399-17783418 | None:intergenic | 20.0% |
| !!! | ATTTATAATTGACTCTTGAT+TGG | - | chr5.1:17784871-17784890 | MS.gene72858:CDS | 20.0% |
| !!! | TCATTCCTCTTTTTTTTTTT+AGG | + | chr5.1:17781627-17781646 | None:intergenic | 20.0% |
| !!! | TCTATCATATTTTCTTTGAA+GGG | - | chr5.1:17784942-17784961 | MS.gene72858:CDS | 20.0% |
| !!! | TTCTATCATATTTTCTTTGA+AGG | - | chr5.1:17784941-17784960 | MS.gene72858:CDS | 20.0% |
| !!! | TTTTTCTAATCATCAAAGTT+TGG | - | chr5.1:17781432-17781451 | MS.gene72858:intron | 20.0% |
| ! | ACTCTCCTAAAAAAAAAAAG+AGG | - | chr5.1:17781619-17781638 | MS.gene72858:CDS | 25.0% |
| ! | ATAACAATAGAGAGAGAAAA+AGG | - | chr5.1:17781705-17781724 | MS.gene72858:intron | 25.0% |
| ! | CTTATAGCTATCTCTATTTA+TGG | + | chr5.1:17782931-17782950 | None:intergenic | 25.0% |
| ! | TCAAATGAATGTAAATTGTG+TGG | + | chr5.1:17783261-17783280 | None:intergenic | 25.0% |
| ! | TCACAAAAGTTGTTGAAAAA+TGG | - | chr5.1:17781768-17781787 | MS.gene72858:intron | 25.0% |
| ! | TTAAGATCCATAGAGATAAA+AGG | + | chr5.1:17783902-17783921 | None:intergenic | 25.0% |
| ! | TTTACACAATAAGATATGTG+AGG | - | chr5.1:17784569-17784588 | MS.gene72858:intron | 25.0% |
| !! | AGTCACATTTGATGATAAAA+TGG | - | chr5.1:17784314-17784333 | MS.gene72858:intron | 25.0% |
| !! | GCAGAGATTTAAAATTAAAC+GGG | + | chr5.1:17783398-17783417 | None:intergenic | 25.0% |
| !! | TGTAAATATTTTCGACTTCT+AGG | + | chr5.1:17782300-17782319 | None:intergenic | 25.0% |
| !! | TTGATGATAAAATGGCTATA+AGG | - | chr5.1:17784322-17784341 | MS.gene72858:intron | 25.0% |
| !! | TTGTTTTCCTTTTATCTCTA+TGG | - | chr5.1:17783892-17783911 | MS.gene72858:intron | 25.0% |
| !! | TTTGACAAATTTTGAACTGA+AGG | - | chr5.1:17784967-17784986 | MS.gene72858:CDS | 25.0% |
| !!! | AAAGAACACAAAAGTGTTAT+GGG | - | chr5.1:17783998-17784017 | MS.gene72858:intron | 25.0% |
| !!! | ATTATATTTTGAGAGACAGT+AGG | + | chr5.1:17783187-17783206 | None:intergenic | 25.0% |
| !!! | CTTTGATTTTGACAAAGTTT+TGG | + | chr5.1:17783150-17783169 | None:intergenic | 25.0% |
| !!! | TAGTAAAAGTGTTCAAGATA+TGG | + | chr5.1:17783028-17783047 | None:intergenic | 25.0% |
| !!! | TCTTTTTTTTTTTAGGAGAG+TGG | + | chr5.1:17781620-17781639 | None:intergenic | 25.0% |
| !!! | TTCATCGTTGTTTTTTTTAG+TGG | + | chr5.1:17782043-17782062 | None:intergenic | 25.0% |
| AAAGTTTGTACCATAAAGTG+TGG | + | chr5.1:17783773-17783792 | None:intergenic | 30.0% | |
| AAGTTTGTACCATAAAGTGT+GGG | + | chr5.1:17783772-17783791 | None:intergenic | 30.0% | |
| ACATACTCTACTAGAAGAAA+TGG | - | chr5.1:17782011-17782030 | MS.gene72858:CDS | 30.0% | |
| CATAGTGAATCATAATCCAA+CGG | - | chr5.1:17784083-17784102 | MS.gene72858:intron | 30.0% | |
| CTTCTTTCATTCAAGAAACT+AGG | - | chr5.1:17781388-17781407 | MS.gene72858:intron | 30.0% | |
| GAGGATATGAAAATGGTTAT+GGG | - | chr5.1:17783846-17783865 | MS.gene72858:intron | 30.0% | |
| GATGCTTAAGTAATGTCTTT+GGG | - | chr5.1:17781953-17781972 | MS.gene72858:CDS | 30.0% | |
| TCTTTCTTATTCTGTCACAT+GGG | + | chr5.1:17782122-17782141 | None:intergenic | 30.0% | |
| TGAGGATATGAAAATGGTTA+TGG | - | chr5.1:17783845-17783864 | MS.gene72858:intron | 30.0% | |
| TTATTGTCCAATAGAAAGAG+AGG | + | chr5.1:17781689-17781708 | None:intergenic | 30.0% | |
| TTCTTTCTTATTCTGTCACA+TGG | + | chr5.1:17782123-17782142 | None:intergenic | 30.0% | |
| ! | AACCAATTTCCAACAACTTT+TGG | - | chr5.1:17781650-17781669 | MS.gene72858:CDS | 30.0% |
| ! | AAGAAAAAAAGGCATGTCTA+GGG | + | chr5.1:17784193-17784212 | None:intergenic | 30.0% |
| ! | AAGATGTGTTTTACCTTTCA+TGG | + | chr5.1:17784808-17784827 | None:intergenic | 30.0% |
| ! | AATACATGTTGTGCTTTAAG+AGG | - | chr5.1:17783063-17783082 | MS.gene72858:intron | 30.0% |
| ! | ACAAATTTTGAACTGAAGGA+TGG | - | chr5.1:17784971-17784990 | MS.gene72858:CDS | 30.0% |
| ! | ACAAGACACAAATCAAGTTT+TGG | + | chr5.1:17782985-17783004 | None:intergenic | 30.0% |
| ! | CTATATCAGTTTTACTAGCA+AGG | + | chr5.1:17783097-17783116 | None:intergenic | 30.0% |
| ! | GTAAGTTTTTGTGACTTCTA+GGG | + | chr5.1:17783231-17783250 | None:intergenic | 30.0% |
| ! | TAAGAAAAAAAGGCATGTCT+AGG | + | chr5.1:17784194-17784213 | None:intergenic | 30.0% |
| !! | AAAACTTGATTTGTGTCTTG+TGG | - | chr5.1:17782984-17783003 | MS.gene72858:intron | 30.0% |
| !! | ATACATGTTGTGCTTTAAGA+GGG | - | chr5.1:17783064-17783083 | MS.gene72858:intron | 30.0% |
| !! | GAAAGAACACAAAAGTGTTA+TGG | - | chr5.1:17783997-17784016 | MS.gene72858:intron | 30.0% |
| !!! | GATTTTGACAAAGTTTTGGA+TGG | + | chr5.1:17783146-17783165 | None:intergenic | 30.0% |
| AAAGAGAGCTAGTTGAGAAA+TGG | - | chr5.1:17784721-17784740 | MS.gene72858:intron | 35.0% | |
| AAGAGAGCTAGTTGAGAAAT+GGG | - | chr5.1:17784722-17784741 | MS.gene72858:intron | 35.0% | |
| AGAAGTCACAAAAACTTACG+AGG | - | chr5.1:17783232-17783251 | MS.gene72858:intron | 35.0% | |
| AGATTTAACCATTGCCCTAA+GGG | + | chr5.1:17781843-17781862 | None:intergenic | 35.0% | |
| AGTTTCTATCATCCAACATG+AGG | - | chr5.1:17783827-17783846 | MS.gene72858:intron | 35.0% | |
| ATGTGAGGTATACATGTTTG+TGG | - | chr5.1:17784584-17784603 | MS.gene72858:intron | 35.0% | |
| CAAACTTATTGAAGCCATCA+AGG | - | chr5.1:17781537-17781556 | MS.gene72858:CDS | 35.0% | |
| CACCAAAAGTTGTTGGAAAT+TGG | + | chr5.1:17781655-17781674 | None:intergenic | 35.0% | |
| CCAACATGAGGATATGAAAA+TGG | - | chr5.1:17783839-17783858 | MS.gene72858:intron | 35.0% | |
| CCAATAGAAAGAGAGGAAAA+AGG | + | chr5.1:17781682-17781701 | None:intergenic | 35.0% | |
| GACTTTCTTTCTTCCATGAA+AGG | - | chr5.1:17784792-17784811 | MS.gene72858:CDS | 35.0% | |
| GATAGAAACTCAAAGAAGTG+CGG | + | chr5.1:17783817-17783836 | None:intergenic | 35.0% | |
| GGATGCTTAAGTAATGTCTT+TGG | - | chr5.1:17781952-17781971 | MS.gene72858:CDS | 35.0% | |
| GTTTCCTACCTTCAGAATTT+GGG | - | chr5.1:17784250-17784269 | MS.gene72858:intron | 35.0% | |
| GTTTGTGGCAGTTGTTTATA+TGG | - | chr5.1:17784599-17784618 | MS.gene72858:intron | 35.0% | |
| TACCATAAAGTGTGGGAAAA+GGG | + | chr5.1:17783765-17783784 | None:intergenic | 35.0% | |
| TACTTCAACGTCCAGATATA+GGG | - | chr5.1:17781341-17781360 | MS.gene72858:CDS | 35.0% | |
| TAGATTTAACCATTGCCCTA+AGG | + | chr5.1:17781844-17781863 | None:intergenic | 35.0% | |
| TATTCTGTCACATGGGATTA+CGG | + | chr5.1:17782115-17782134 | None:intergenic | 35.0% | |
| TATTGGTAGGAGAATAGTGA+AGG | - | chr5.1:17781288-17781307 | MS.gene72858:CDS | 35.0% | |
| TGAGTGTCCAAATGAAAAAG+TGG | + | chr5.1:17783739-17783758 | None:intergenic | 35.0% | |
| TTAGTTGTCCCTACATGAAA+TGG | - | chr5.1:17782385-17782404 | MS.gene72858:intron | 35.0% | |
| TTTCATGTAGGGACAACTAA+TGG | + | chr5.1:17782385-17782404 | None:intergenic | 35.0% | |
| ! | CCATTTTCATATCCTCATGT+TGG | + | chr5.1:17783842-17783861 | None:intergenic | 35.0% |
| ! | CCTTTTTCCTCTCTTTCTAT+TGG | - | chr5.1:17781679-17781698 | MS.gene72858:CDS | 35.0% |
| ! | CGTAAGTTTTTGTGACTTCT+AGG | + | chr5.1:17783232-17783251 | None:intergenic | 35.0% |
| ! | TAATTGACTCTTGATTGGTG+TGG | - | chr5.1:17784876-17784895 | MS.gene72858:CDS | 35.0% |
| !! | AAGAAAGTCTTGTTCGGATA+TGG | + | chr5.1:17784781-17784800 | None:intergenic | 35.0% |
| !! | AAGTAATGTCTTTGGGACAT+TGG | - | chr5.1:17781960-17781979 | MS.gene72858:CDS | 35.0% |
| !! | AAGTTTCACTAACTTGCTCA+CGG | - | chr5.1:17784143-17784162 | MS.gene72858:intron | 35.0% |
| !! | GGAAGAAAGAAAGTCTTGTT+CGG | + | chr5.1:17784787-17784806 | None:intergenic | 35.0% |
| !!! | AGATGCACCACTTTTTCATT+TGG | - | chr5.1:17783729-17783748 | MS.gene72858:intron | 35.0% |
| AAAGGAGCTTGCATCATTGA+TGG | + | chr5.1:17783938-17783957 | None:intergenic | 40.0% | |
| AATCTTGTTGCCCCAAAGAT+TGG | - | chr5.1:17783204-17783223 | MS.gene72858:intron | 40.0% | |
| AGGTTGTCACCAAAAGTTGT+TGG | + | chr5.1:17781662-17781681 | None:intergenic | 40.0% | |
| AGTCACAAAAACTTACGAGG+AGG | - | chr5.1:17783235-17783254 | MS.gene72858:intron | 40.0% | |
| ATCTGCAGAACCAACAACAA+AGG | + | chr5.1:17783956-17783975 | None:intergenic | 40.0% | |
| CGTTTCCTACCTTCAGAATT+TGG | - | chr5.1:17784249-17784268 | MS.gene72858:intron | 40.0% | |
| GAGAAATGGGAGAAACTTAC+TGG | - | chr5.1:17784735-17784754 | MS.gene72858:CDS | 40.0% | |
| GATGTAAGTGAAAGGGATGT+TGG | + | chr5.1:17784364-17784383 | None:intergenic | 40.0% | |
| GCTATCTCTATTTATGGGCT+AGG | + | chr5.1:17782925-17782944 | None:intergenic | 40.0% | |
| GGCTATAAGGAAAGCAATTG+AGG | - | chr5.1:17784335-17784354 | MS.gene72858:intron | 40.0% | |
| GTACCATAAAGTGTGGGAAA+AGG | + | chr5.1:17783766-17783785 | None:intergenic | 40.0% | |
| GTACTTCAACGTCCAGATAT+AGG | - | chr5.1:17781340-17781359 | MS.gene72858:CDS | 40.0% | |
| GTGAAACTTCTATTAGCCGT+TGG | + | chr5.1:17784102-17784121 | None:intergenic | 40.0% | |
| TCAGTATCAAGCCCTATATC+TGG | + | chr5.1:17781355-17781374 | None:intergenic | 40.0% | |
| TCATCAAATGTGACTCTTCC+TGG | + | chr5.1:17784309-17784328 | None:intergenic | 40.0% | |
| TCGAAAATGAACTCCAGACA+TGG | + | chr5.1:17781494-17781513 | None:intergenic | 40.0% | |
| TGTCCCTACATGAAATGGTT+GGG | - | chr5.1:17782390-17782409 | MS.gene72858:intron | 40.0% | |
| TTGAGAGACAGTAGGATAAG+TGG | + | chr5.1:17783179-17783198 | None:intergenic | 40.0% | |
| TTGTCCCTACATGAAATGGT+TGG | - | chr5.1:17782389-17782408 | MS.gene72858:intron | 40.0% | |
| ! | AAAAAAGGCATGTCTAGGGT+CGG | + | chr5.1:17784189-17784208 | None:intergenic | 40.0% |
| ! | AAAGAGCAAGGTTCTAGTTG+TGG | - | chr5.1:17781252-17781271 | MS.gene72858:CDS | 40.0% |
| ! | AAGAGCAAGGTTCTAGTTGT+GGG | - | chr5.1:17781253-17781272 | MS.gene72858:CDS | 40.0% |
| ! | AGCATCAAAGCTTTATCCAG+AGG | - | chr5.1:17785000-17785019 | MS.gene72858:CDS | 40.0% |
| ! | ATTGTCTTGTTCAACGTTCG+AGG | + | chr5.1:17784669-17784688 | None:intergenic | 40.0% |
| ! | CTTTGAGTGAGGATGTTTTC+TGG | + | chr5.1:17784705-17784724 | None:intergenic | 40.0% |
| ! | GTGAAGGCAAGTTTAGAACA+AGG | - | chr5.1:17781304-17781323 | MS.gene72858:CDS | 40.0% |
| ! | TACCCTTTTCCCACACTTTA+TGG | - | chr5.1:17783760-17783779 | MS.gene72858:intron | 40.0% |
| !! | ACTTCTAGGGTCCAATCTTT+GGG | + | chr5.1:17783218-17783237 | None:intergenic | 40.0% |
| !! | GTTGTTATTTGCACCATGTC+TGG | - | chr5.1:17781478-17781497 | MS.gene72858:intron | 40.0% |
| !!! | CAAAGTTTTGGATGGTCATG+TGG | + | chr5.1:17783138-17783157 | None:intergenic | 40.0% |
| AAGGTTGTTCTCTATGGCGA+CGG | - | chr5.1:17784456-17784475 | MS.gene72858:intron | 45.0% | |
| AGCCCCAACCATTTCATGTA+GGG | + | chr5.1:17782396-17782415 | None:intergenic | 45.0% | |
| ATCTGGACGTTGAAGTACGT+AGG | + | chr5.1:17781338-17781357 | None:intergenic | 45.0% | |
| ATTGGTGTGGAATGCAGGTT+TGG | - | chr5.1:17784889-17784908 | MS.gene72858:CDS | 45.0% | |
| CCTACCTTCAGAATTTGGGA+TGG | - | chr5.1:17784254-17784273 | MS.gene72858:intron | 45.0% | |
| GAAACTAGGTGCTCATCTTG+TGG | - | chr5.1:17781402-17781421 | MS.gene72858:intron | 45.0% | |
| GAAATGGTTGGGGCTATGTT+TGG | - | chr5.1:17782401-17782420 | MS.gene72858:intron | 45.0% | |
| GTCCCTACATGAAATGGTTG+GGG | - | chr5.1:17782391-17782410 | MS.gene72858:intron | 45.0% | |
| TAGCCCCAACCATTTCATGT+AGG | + | chr5.1:17782397-17782416 | None:intergenic | 45.0% | |
| TATGGCGACGGTAATGTCAA+AGG | - | chr5.1:17784468-17784487 | MS.gene72858:intron | 45.0% | |
| TCACGGTAGGAGACCTATTA+AGG | - | chr5.1:17784160-17784179 | MS.gene72858:intron | 45.0% | |
| TCTTGATTGGTGTGGAATGC+AGG | - | chr5.1:17784884-17784903 | MS.gene72858:CDS | 45.0% | |
| TGGCGGAGATGTAAGTGAAA+GGG | + | chr5.1:17784371-17784390 | None:intergenic | 45.0% | |
| TTGGCGGAGATGTAAGTGAA+AGG | + | chr5.1:17784372-17784391 | None:intergenic | 45.0% | |
| ! | AAACTCAAAGAAGTGCGGAG+AGG | + | chr5.1:17783812-17783831 | None:intergenic | 45.0% |
| ! | AACTCAAAGAAGTGCGGAGA+GGG | + | chr5.1:17783811-17783830 | None:intergenic | 45.0% |
| ! | AGAGCAAGGTTCTAGTTGTG+GGG | - | chr5.1:17781254-17781273 | MS.gene72858:CDS | 45.0% |
| ! | AGAGTGTTCCCATTTGAGAC+AGG | + | chr5.1:17784422-17784441 | None:intergenic | 45.0% |
| ! | CAACTAGCTCTCTTTGAGTG+AGG | + | chr5.1:17784716-17784735 | None:intergenic | 45.0% |
| ! | CCATCCCAAATTCTGAAGGT+AGG | + | chr5.1:17784257-17784276 | None:intergenic | 45.0% |
| ! | GATGCAAGCTCCTTTGTTGT+TGG | - | chr5.1:17783943-17783962 | MS.gene72858:intron | 45.0% |
| ! | TCCCATTTGAGACAGGTTAC+CGG | + | chr5.1:17784415-17784434 | None:intergenic | 45.0% |
| ! | TGAGTGAGGATGTTTTCTGG+TGG | + | chr5.1:17784702-17784721 | None:intergenic | 45.0% |
| !! | CTTCTAGGGTCCAATCTTTG+GGG | + | chr5.1:17783217-17783236 | None:intergenic | 45.0% |
| !! | GACTTCTAGGGTCCAATCTT+TGG | + | chr5.1:17783219-17783238 | None:intergenic | 45.0% |
| !! | TTCACTAACTTGCTCACGGT+AGG | - | chr5.1:17784147-17784166 | MS.gene72858:intron | 45.0% |
| AAAGTAGCCCGCGAAACAGT+TGG | + | chr5.1:17784391-17784410 | None:intergenic | 50.0% | |
| AATGCAGGTTTGGACCTTGC+AGG | - | chr5.1:17784899-17784918 | MS.gene72858:CDS | 50.0% | |
| AGAAATGCCCCACTGCTACT+TGG | + | chr5.1:17784925-17784944 | None:intergenic | 50.0% | |
| AGGTAGGAAACGCTAGTGGA+AGG | + | chr5.1:17784241-17784260 | None:intergenic | 50.0% | |
| AGTGCATGTCCCATAAGAGC+TGG | + | chr5.1:17784282-17784301 | None:intergenic | 50.0% | |
| ATGCGTGTGTATTGCACCTC+TGG | + | chr5.1:17785019-17785038 | None:intergenic | 50.0% | |
| ATGGGACATGCACTTGAACC+AGG | - | chr5.1:17784288-17784307 | MS.gene72858:intron | 50.0% | |
| CAAGGATGCAGAGAACGTCA+AGG | - | chr5.1:17781555-17781574 | MS.gene72858:CDS | 50.0% | |
| CGGGACAAGGTTGTTCTCTA+TGG | - | chr5.1:17784450-17784469 | MS.gene72858:intron | 50.0% | |
| CTAGGGTCGGAGACCTTAAT+AGG | + | chr5.1:17784176-17784195 | None:intergenic | 50.0% | |
| CTAGGTGCTCATCTTGTGGA+AGG | - | chr5.1:17781406-17781425 | MS.gene72858:intron | 50.0% | |
| CTGAAGGTAGGAAACGCTAG+TGG | + | chr5.1:17784245-17784264 | None:intergenic | 50.0% | |
| GACGTTCTCTGCATCCTTGA+TGG | + | chr5.1:17781554-17781573 | None:intergenic | 50.0% | |
| GCCGGTAACCTGTCTCAAAT+GGG | - | chr5.1:17784411-17784430 | MS.gene72858:intron | 50.0% | |
| GGGTCCATCCCAAATTCTGA+AGG | + | chr5.1:17784261-17784280 | None:intergenic | 50.0% | |
| GTGCATGTCCCATAAGAGCT+GGG | + | chr5.1:17784281-17784300 | None:intergenic | 50.0% | |
| TAGAGAACAACCTTGTCCCG+TGG | + | chr5.1:17784450-17784469 | None:intergenic | 50.0% | |
| TGCCGGTAACCTGTCTCAAA+TGG | - | chr5.1:17784410-17784429 | MS.gene72858:intron | 50.0% | |
| TGGGAACACTCTTTCCTCCA+CGG | - | chr5.1:17784430-17784449 | MS.gene72858:intron | 50.0% | |
| ! | AGAGGTGCAATACACACGCA+TGG | - | chr5.1:17785018-17785037 | MS.gene72858:CDS | 50.0% |
| ! | AGCAAGGTTCTAGTTGTGGG+GGG | - | chr5.1:17781256-17781275 | MS.gene72858:CDS | 50.0% |
| ! | GAGCAAGGTTCTAGTTGTGG+GGG | - | chr5.1:17781255-17781274 | MS.gene72858:CDS | 50.0% |
| !! | GGGGTACTGGGTATATTGGT+AGG | - | chr5.1:17781275-17781294 | MS.gene72858:CDS | 50.0% |
| !! | TTCTAGTTGTGGGGGGTACT+GGG | - | chr5.1:17781263-17781282 | MS.gene72858:CDS | 50.0% |
| AACCAGTGCCCTTAGGGCAA+TGG | - | chr5.1:17781832-17781851 | MS.gene72858:CDS | 55.0% | |
| ACTCTTTCCTCCACGGGACA+AGG | - | chr5.1:17784437-17784456 | MS.gene72858:intron | 55.0% | |
| AGAACAACCTTGTCCCGTGG+AGG | + | chr5.1:17784447-17784466 | None:intergenic | 55.0% | |
| ATCTCCGCCAACTGTTTCGC+GGG | - | chr5.1:17784381-17784400 | MS.gene72858:intron | 55.0% | |
| CATCTCCGCCAACTGTTTCG+CGG | - | chr5.1:17784380-17784399 | MS.gene72858:intron | 55.0% | |
| CGTGCTAACCAGTGCCCTTA+GGG | - | chr5.1:17781826-17781845 | MS.gene72858:CDS | 55.0% | |
| CTTGCAGGCCAAGTAGCAGT+GGG | - | chr5.1:17784914-17784933 | MS.gene72858:CDS | 55.0% | |
| GGGAACACTCTTTCCTCCAC+GGG | - | chr5.1:17784431-17784450 | MS.gene72858:intron | 55.0% | |
| GGGATGGACCCAGCTCTTAT+GGG | - | chr5.1:17784270-17784289 | MS.gene72858:intron | 55.0% | |
| TCGTGCTAACCAGTGCCCTT+AGG | - | chr5.1:17781825-17781844 | MS.gene72858:CDS | 55.0% | |
| TGGGATGGACCCAGCTCTTA+TGG | - | chr5.1:17784269-17784288 | MS.gene72858:intron | 55.0% | |
| TTGCAGGCCAAGTAGCAGTG+GGG | - | chr5.1:17784915-17784934 | MS.gene72858:CDS | 55.0% | |
| ! | AACCATTGCCCTAAGGGCAC+TGG | + | chr5.1:17781837-17781856 | None:intergenic | 55.0% |
| ! | GTTCTAGTTGTGGGGGGTAC+TGG | - | chr5.1:17781262-17781281 | MS.gene72858:CDS | 55.0% |
| ! | TGTTTCGCGGGCTACTTTGC+CGG | - | chr5.1:17784393-17784412 | MS.gene72858:intron | 55.0% |
| !! | GTGGGGGGTACTGGGTATAT+TGG | - | chr5.1:17781271-17781290 | MS.gene72858:CDS | 55.0% |
| CCTTGCAGGCCAAGTAGCAG+TGG | - | chr5.1:17784913-17784932 | MS.gene72858:CDS | 60.0% | |
| GTAGCCCGCGAAACAGTTGG+CGG | + | chr5.1:17784388-17784407 | None:intergenic | 60.0% | |
| ! | CCACTGCTACTTGGCCTGCA+AGG | + | chr5.1:17784916-17784935 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 17781244 | 17785066 | 17781244 | ID=MS.gene72858 |
| chr5.1 | mRNA | 17781244 | 17785066 | 17781244 | ID=MS.gene72858.t1;Parent=MS.gene72858 |
| chr5.1 | exon | 17784734 | 17785066 | 17784734 | ID=MS.gene72858.t1.exon1;Parent=MS.gene72858.t1 |
| chr5.1 | CDS | 17784734 | 17785066 | 17784734 | ID=cds.MS.gene72858.t1;Parent=MS.gene72858.t1 |
| chr5.1 | exon | 17781821 | 17782061 | 17781821 | ID=MS.gene72858.t1.exon2;Parent=MS.gene72858.t1 |
| chr5.1 | CDS | 17781821 | 17782061 | 17781821 | ID=cds.MS.gene72858.t1;Parent=MS.gene72858.t1 |
| chr5.1 | exon | 17781497 | 17781700 | 17781497 | ID=MS.gene72858.t1.exon3;Parent=MS.gene72858.t1 |
| chr5.1 | CDS | 17781497 | 17781700 | 17781497 | ID=cds.MS.gene72858.t1;Parent=MS.gene72858.t1 |
| chr5.1 | exon | 17781244 | 17781404 | 17781244 | ID=MS.gene72858.t1.exon4;Parent=MS.gene72858.t1 |
| chr5.1 | CDS | 17781244 | 17781404 | 17781244 | ID=cds.MS.gene72858.t1;Parent=MS.gene72858.t1 |
| Gene Sequence |
| Protein sequence |
