Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74900.t1 | XP_003590925.1 | 99.6 | 699 | 3 | 0 | 1 | 699 | 1 | 699 | 0.00E+00 | 1352.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74900.t1 | Q94KD3 | 83.4 | 685 | 113 | 1 | 15 | 699 | 24 | 707 | 0.0e+00 | 1136.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74900.t1 | G7I669 | 99.6 | 699 | 3 | 0 | 1 | 699 | 1 | 699 | 0.0e+00 | 1352.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene74900 | 0.841219 | 5.43E-58 | -1.69E-46 |
| MS.gene049166 | MS.gene74900 | 0.828514 | 8.62E-55 | -1.69E-46 |
| MS.gene049178 | MS.gene74900 | 0.809902 | 1.50E-50 | -1.69E-46 |
| MS.gene049208 | MS.gene74900 | 0.835895 | 1.29E-56 | -1.69E-46 |
| MS.gene049786 | MS.gene74900 | 0.824496 | 7.82E-54 | -1.69E-46 |
| MS.gene049807 | MS.gene74900 | 0.812565 | 3.98E-51 | -1.69E-46 |
| MS.gene049887 | MS.gene74900 | 0.833146 | 6.31E-56 | -1.69E-46 |
| MS.gene050085 | MS.gene74900 | 0.805406 | 1.36E-49 | -1.69E-46 |
| MS.gene050114 | MS.gene74900 | 0.860613 | 1.83E-63 | -1.69E-46 |
| MS.gene050317 | MS.gene74900 | 0.839072 | 1.97E-57 | -1.69E-46 |
| MS.gene050439 | MS.gene74900 | 0.856072 | 4.12E-62 | -1.69E-46 |
| MS.gene050838 | MS.gene74900 | 0.862778 | 3.98E-64 | -1.69E-46 |
| MS.gene051003 | MS.gene74900 | 0.819822 | 9.49E-53 | -1.69E-46 |
| MS.gene051063 | MS.gene74900 | 0.813135 | 2.98E-51 | -1.69E-46 |
| MS.gene051102 | MS.gene74900 | 0.82552 | 4.48E-54 | -1.69E-46 |
| MS.gene051343 | MS.gene74900 | 0.802976 | 4.35E-49 | -1.69E-46 |
| MS.gene051381 | MS.gene74900 | 0.81073 | 9.97E-51 | -1.69E-46 |
| MS.gene051642 | MS.gene74900 | 0.814559 | 1.45E-51 | -1.69E-46 |
| MS.gene051676 | MS.gene74900 | 0.83478 | 2.46E-56 | -1.69E-46 |
| MS.gene051724 | MS.gene74900 | 0.80809 | 3.67E-50 | -1.69E-46 |
| MS.gene051746 | MS.gene74900 | 0.821933 | 3.10E-53 | -1.69E-46 |
| MS.gene051748 | MS.gene74900 | 0.831003 | 2.14E-55 | -1.69E-46 |
| MS.gene051756 | MS.gene74900 | 0.811982 | 5.33E-51 | -1.69E-46 |
| MS.gene051757 | MS.gene74900 | 0.817652 | 2.95E-52 | -1.69E-46 |
| MS.gene051975 | MS.gene74900 | 0.8195 | 1.12E-52 | -1.69E-46 |
| MS.gene052072 | MS.gene74900 | 0.820918 | 5.32E-53 | -1.69E-46 |
| MS.gene052307 | MS.gene74900 | 0.84481 | 6.00E-59 | -1.69E-46 |
| MS.gene052335 | MS.gene74900 | 0.804953 | 1.69E-49 | -1.69E-46 |
| MS.gene052434 | MS.gene74900 | 0.821167 | 4.66E-53 | -1.69E-46 |
| MS.gene052609 | MS.gene74900 | 0.851746 | 7.26E-61 | -1.69E-46 |
| MS.gene052932 | MS.gene74900 | 0.812191 | 4.80E-51 | -1.69E-46 |
| MS.gene053079 | MS.gene74900 | 0.807311 | 5.38E-50 | -1.69E-46 |
| MS.gene053109 | MS.gene74900 | 0.80119 | 1.01E-48 | -1.69E-46 |
| MS.gene053167 | MS.gene74900 | 0.803633 | 3.18E-49 | -1.69E-46 |
| MS.gene053381 | MS.gene74900 | 0.836065 | 1.16E-56 | -1.69E-46 |
| MS.gene053677 | MS.gene74900 | 0.814609 | 1.41E-51 | -1.69E-46 |
| MS.gene053952 | MS.gene74900 | 0.800718 | 1.26E-48 | -1.69E-46 |
| MS.gene055311 | MS.gene74900 | 0.836915 | 7.07E-57 | -1.69E-46 |
| MS.gene055313 | MS.gene74900 | 0.843109 | 1.71E-58 | -1.69E-46 |
| MS.gene055314 | MS.gene74900 | 0.84031 | 9.39E-58 | -1.69E-46 |
| MS.gene055424 | MS.gene74900 | 0.803797 | 2.94E-49 | -1.69E-46 |
| MS.gene055469 | MS.gene74900 | 0.810769 | 9.78E-51 | -1.69E-46 |
| MS.gene055513 | MS.gene74900 | 0.83523 | 1.89E-56 | -1.69E-46 |
| MS.gene055603 | MS.gene74900 | 0.847205 | 1.34E-59 | -1.69E-46 |
| MS.gene056181 | MS.gene74900 | 0.859299 | 4.55E-63 | -1.69E-46 |
| MS.gene056390 | MS.gene74900 | 0.807468 | 4.98E-50 | -1.69E-46 |
| MS.gene056403 | MS.gene74900 | 0.80229 | 6.02E-49 | -1.69E-46 |
| MS.gene056432 | MS.gene74900 | 0.825441 | 4.68E-54 | -1.69E-46 |
| MS.gene056638 | MS.gene74900 | 0.819796 | 9.62E-53 | -1.69E-46 |
| MS.gene056787 | MS.gene74900 | 0.836539 | 8.82E-57 | -1.69E-46 |
| MS.gene056901 | MS.gene74900 | 0.806502 | 7.97E-50 | -1.69E-46 |
| MS.gene056986 | MS.gene74900 | 0.815501 | 8.95E-52 | -1.69E-46 |
| MS.gene057057 | MS.gene74900 | 0.808665 | 2.77E-50 | -1.69E-46 |
| MS.gene057094 | MS.gene74900 | 0.852816 | 3.60E-61 | -1.69E-46 |
| MS.gene057102 | MS.gene74900 | 0.815979 | 7.00E-52 | -1.69E-46 |
| MS.gene057234 | MS.gene74900 | 0.812918 | 3.33E-51 | -1.69E-46 |
| MS.gene057360 | MS.gene74900 | 0.865761 | 4.67E-65 | -1.69E-46 |
| MS.gene058238 | MS.gene74900 | 0.805128 | 1.55E-49 | -1.69E-46 |
| MS.gene058638 | MS.gene74900 | 0.847939 | 8.42E-60 | -1.69E-46 |
| MS.gene058639 | MS.gene74900 | 0.864238 | 1.40E-64 | -1.69E-46 |
| MS.gene058758 | MS.gene74900 | 0.846985 | 1.54E-59 | -1.69E-46 |
| MS.gene05880 | MS.gene74900 | 0.827856 | 1.24E-54 | -1.69E-46 |
| MS.gene058852 | MS.gene74900 | 0.827737 | 1.33E-54 | -1.69E-46 |
| MS.gene058906 | MS.gene74900 | 0.809122 | 2.21E-50 | -1.69E-46 |
| MS.gene059050 | MS.gene74900 | 0.80064 | 1.31E-48 | -1.69E-46 |
| MS.gene059171 | MS.gene74900 | 0.870974 | 9.73E-67 | -1.69E-46 |
| MS.gene059227 | MS.gene74900 | 0.820396 | 7.01E-53 | -1.69E-46 |
| MS.gene059713 | MS.gene74900 | 0.801965 | 7.02E-49 | -1.69E-46 |
| MS.gene059719 | MS.gene74900 | 0.817724 | 2.84E-52 | -1.69E-46 |
| MS.gene059725 | MS.gene74900 | 0.821006 | 5.08E-53 | -1.69E-46 |
| MS.gene06001 | MS.gene74900 | 0.804741 | 1.87E-49 | -1.69E-46 |
| MS.gene06010 | MS.gene74900 | 0.812395 | 4.33E-51 | -1.69E-46 |
| MS.gene06011 | MS.gene74900 | 0.821685 | 3.54E-53 | -1.69E-46 |
| MS.gene060191 | MS.gene74900 | 0.80918 | 2.15E-50 | -1.69E-46 |
| MS.gene060637 | MS.gene74900 | 0.835291 | 1.83E-56 | -1.69E-46 |
| MS.gene060763 | MS.gene74900 | 0.816818 | 4.55E-52 | -1.69E-46 |
| MS.gene060869 | MS.gene74900 | 0.805735 | 1.16E-49 | -1.69E-46 |
| MS.gene060870 | MS.gene74900 | 0.801901 | 7.24E-49 | -1.69E-46 |
| MS.gene060933 | MS.gene74900 | 0.804929 | 1.71E-49 | -1.69E-46 |
| MS.gene061006 | MS.gene74900 | 0.802366 | 5.80E-49 | -1.69E-46 |
| MS.gene061100 | MS.gene74900 | 0.804657 | 1.94E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene74900 | MS.gene005058 | PPI |
| MS.gene74900 | MS.gene07608 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74900.t1 | MTR_1g079770 | 99.571 | 699 | 3 | 0 | 1 | 699 | 1 | 699 | 0.0 | 1434 |
| MS.gene74900.t1 | MTR_1g079770 | 99.482 | 579 | 3 | 0 | 1 | 579 | 1 | 579 | 0.0 | 1188 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74900.t1 | AT1G71270 | 83.236 | 686 | 114 | 1 | 14 | 699 | 23 | 707 | 0.0 | 1198 |
| MS.gene74900.t1 | AT1G71300 | 77.681 | 690 | 147 | 2 | 16 | 699 | 13 | 701 | 0.0 | 1122 |
| MS.gene74900.t1 | AT1G71300 | 73.370 | 736 | 143 | 5 | 16 | 699 | 13 | 747 | 0.0 | 1103 |
Find 129 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGACACTTTGTTGAAGTATT+TGG | 0.142382 | 1.1:-59264016 | None:intergenic |
| AAACTCACTTGTACTTTAAA+AGG | 0.194550 | 1.1:-59264037 | None:intergenic |
| GCAACATCCTATGATTTAAT+TGG | 0.226169 | 1.1:+59265411 | MS.gene74900:CDS |
| AAGTATTTGGATATTTGTTT+TGG | 0.230134 | 1.1:-59264003 | None:intergenic |
| AGAAACACCGTTTGTAGTTT+TGG | 0.244653 | 1.1:-59268978 | None:intergenic |
| AACTCTGCTAAGTGGATTTC+AGG | 0.248051 | 1.1:+59261953 | MS.gene74900:CDS |
| ATCCACTTAAACTCTGAGTT+TGG | 0.250844 | 1.1:+59268793 | MS.gene74900:CDS |
| TATTATCACAATCATGAATT+TGG | 0.261483 | 1.1:-59261914 | None:intergenic |
| CTCATACATGATTGAAGATA+TGG | 0.264600 | 1.1:-59270266 | None:intergenic |
| GCAAGAGAAGTCTATGGATA+TGG | 0.265601 | 1.1:+59262455 | MS.gene74900:CDS |
| GCAACAGTTATAGGTTTATC+AGG | 0.284406 | 1.1:-59270031 | None:intergenic |
| CGCTTTATACTTACAGGCTT+TGG | 0.287857 | 1.1:-59269886 | None:intergenic |
| TCCACTTCCGCAACAGTTAT+AGG | 0.293677 | 1.1:-59270040 | None:intergenic |
| TTAGTATAATCTCTAAGTTT+TGG | 0.301178 | 1.1:-59261614 | None:intergenic |
| TCCACTTAAACTCTGAGTTT+GGG | 0.308316 | 1.1:+59268794 | MS.gene74900:CDS |
| AGTGGAGTTGGATTCAATTC+AGG | 0.310032 | 1.1:+59261661 | MS.gene74900:CDS |
| TTGGTTTATACAGGTCCTTT+TGG | 0.364770 | 1.1:+59267099 | MS.gene74900:intron |
| GAGCTTGCAGAAGCTGCTTA+TGG | 0.365008 | 1.1:+59266269 | MS.gene74900:CDS |
| CCTTCTAGTGCATTTGATCT+AGG | 0.372542 | 1.1:+59260456 | MS.gene74900:CDS |
| ATTGCAGCTTGAACTGAATC+TGG | 0.380544 | 1.1:+59268896 | MS.gene74900:intron |
| TTAAATCATTAAAATGCTCT+TGG | 0.392587 | 1.1:-59269848 | None:intergenic |
| TGATAATATCTTGTCACATA+TGG | 0.393000 | 1.1:+59261929 | MS.gene74900:CDS |
| CTCTGAGTTTGGGGATGGTC+AGG | 0.393038 | 1.1:+59268804 | MS.gene74900:CDS |
| ACCTATAACTGTTGCGGAAG+TGG | 0.396596 | 1.1:+59270039 | MS.gene74900:CDS |
| CTTCAATCATGTATGAGATT+AGG | 0.397107 | 1.1:+59270272 | MS.gene74900:CDS |
| TCGGAGGCGGATTCCATGCT+TGG | 0.397429 | 1.1:+59267646 | MS.gene74900:CDS |
| CCCACCAGGGATCCTCTTGA+TGG | 0.398438 | 1.1:-59270218 | None:intergenic |
| ATTTCAGGAAATTGATGAAC+CGG | 0.399043 | 1.1:+59266185 | MS.gene74900:intron |
| ATCCATATGAAGTTCTGTTC+AGG | 0.405654 | 1.1:+59266247 | MS.gene74900:CDS |
| TTTATTTACCAGGCTGAGAT+TGG | 0.409163 | 1.1:+59262405 | MS.gene74900:intron |
| AATTCTGCAAGAGAAGTCTA+TGG | 0.414810 | 1.1:+59262449 | MS.gene74900:CDS |
| TCGTATAGTAAAGTAGCAAT+TGG | 0.417834 | 1.1:-59270183 | None:intergenic |
| ATCGTTAGATGGACTTCAAC+AGG | 0.417942 | 1.1:+59260645 | MS.gene74900:CDS |
| CCTATAGCATCATAGCAGTT+TGG | 0.418595 | 1.1:-59267153 | None:intergenic |
| CTCCTGAACAGAACTTCATA+TGG | 0.421045 | 1.1:-59266249 | None:intergenic |
| CTCTACACCAATTAAATCAT+AGG | 0.428333 | 1.1:-59265418 | None:intergenic |
| TTCCACAAACTTAGCCAGCT+TGG | 0.428764 | 1.1:-59262814 | None:intergenic |
| ACCATTGAAGAAGATCTAAA+CGG | 0.434766 | 1.1:+59260498 | MS.gene74900:CDS |
| CCCCAAACTCAGAGTTTAAG+TGG | 0.436616 | 1.1:-59268795 | None:intergenic |
| CCCGTTTAGATCTTCTTCAA+TGG | 0.437299 | 1.1:-59260499 | None:intergenic |
| CAAAATTCAAATGCACTTTG+AGG | 0.439404 | 1.1:+59269260 | MS.gene74900:CDS |
| GAAACTGAAGTTTGTAGAAG+TGG | 0.448325 | 1.1:+59263721 | MS.gene74900:CDS |
| CCTAGATCAAATGCACTAGA+AGG | 0.458119 | 1.1:-59260456 | None:intergenic |
| CCAAACTGCTATGATGCTAT+AGG | 0.459765 | 1.1:+59267153 | MS.gene74900:CDS |
| TGATTTGCGCAAAGTGGAGT+TGG | 0.463004 | 1.1:+59261649 | MS.gene74900:CDS |
| TCAATATTTCCCTATGGCCT+CGG | 0.467395 | 1.1:+59268647 | MS.gene74900:CDS |
| AGCATTGGAGAAACTGCAAT+TGG | 0.468009 | 1.1:+59265383 | MS.gene74900:CDS |
| TGCTCATCCATGACACCAAA+AGG | 0.473405 | 1.1:-59267114 | None:intergenic |
| ATATGGATATTTAATAGAGC+TGG | 0.474130 | 1.1:-59266232 | None:intergenic |
| GGCAGGTCAATATTTCCCTA+TGG | 0.475047 | 1.1:+59268641 | MS.gene74900:intron |
| GTTTATCAGGACTCGATGTT+GGG | 0.475291 | 1.1:-59270018 | None:intergenic |
| CCGTGCTTACATACAAGCAT+TGG | 0.475768 | 1.1:+59265368 | MS.gene74900:CDS |
| GGTTTATCAGGACTCGATGT+TGG | 0.478071 | 1.1:-59270019 | None:intergenic |
| ATCCAAGCTGGCTAAGTTTG+TGG | 0.479760 | 1.1:+59262812 | MS.gene74900:CDS |
| CATTATTATCCCTCCGAGAA+TGG | 0.482423 | 1.1:+59262839 | MS.gene74900:CDS |
| CCTATGGCCTCGGTTTAAGA+TGG | 0.482544 | 1.1:+59268657 | MS.gene74900:CDS |
| TATATGTACCATTGTGTTTG+AGG | 0.486517 | 1.1:-59260330 | None:intergenic |
| GAGCAATACAGCATTATTTG+TGG | 0.490021 | 1.1:+59269293 | MS.gene74900:CDS |
| AACCTGAGCTTGAAAAGCTC+AGG | 0.490108 | 1.1:+59263783 | MS.gene74900:CDS |
| CCATTGAAGAAGATCTAAAC+GGG | 0.498176 | 1.1:+59260499 | MS.gene74900:CDS |
| ATGGTGGACATCCTTGTTGA+TGG | 0.498798 | 1.1:+59262858 | MS.gene74900:CDS |
| AGTGATGATATATCGTTAGA+TGG | 0.498874 | 1.1:+59260634 | MS.gene74900:intron |
| ACAAGGATGTCCACCATTCT+CGG | 0.499451 | 1.1:-59262852 | None:intergenic |
| AGCTCATTATGTCTCGGAGG+CGG | 0.500639 | 1.1:+59267633 | MS.gene74900:intron |
| TCGCATAATACACCAGCATC+AGG | 0.502459 | 1.1:+59267191 | MS.gene74900:CDS |
| CACAAAGCCAAAACTACAAA+CGG | 0.504050 | 1.1:+59268971 | MS.gene74900:CDS |
| CAGGAAGCAGGTCCTGAAGC+TGG | 0.508420 | 1.1:+59269237 | MS.gene74900:intron |
| CTTGATAAGTAAATCATCAA+TGG | 0.510022 | 1.1:-59268934 | None:intergenic |
| CAAGAGAAGTCTATGGATAT+GGG | 0.510930 | 1.1:+59262456 | MS.gene74900:CDS |
| AGTCTATGGATATGGGTTTG+AGG | 0.513380 | 1.1:+59262463 | MS.gene74900:CDS |
| ACAGCAGATCGATTCTTTAG+CGG | 0.514662 | 1.1:-59265480 | None:intergenic |
| GGATAGGATTAATATATTGA+AGG | 0.519305 | 1.1:+59265515 | MS.gene74900:CDS |
| AAAACTTAGAGATTATACTA+AGG | 0.519810 | 1.1:+59261616 | MS.gene74900:CDS |
| GAATCTGGAACGACTTAGAA+TGG | 0.521290 | 1.1:+59268911 | MS.gene74900:CDS |
| GATTCCATCAAGAGGATCCC+TGG | 0.522126 | 1.1:+59270214 | MS.gene74900:CDS |
| GTTGCAAATATACTATCTAA+AGG | 0.530234 | 1.1:+59261590 | MS.gene74900:CDS |
| CATCTTAAACCGAGGCCATA+GGG | 0.530347 | 1.1:-59268656 | None:intergenic |
| TTGTTCAATGCAGACCCACC+AGG | 0.531672 | 1.1:-59270232 | None:intergenic |
| CGTATAGTAAAGTAGCAATT+GGG | 0.531794 | 1.1:-59270182 | None:intergenic |
| TATTTCAGCTCATTATGTCT+CGG | 0.532355 | 1.1:+59267627 | MS.gene74900:intron |
| GAGCTGGCTTCAGCTATATG+AGG | 0.536113 | 1.1:-59266216 | None:intergenic |
| CCACTTAAACTCTGAGTTTG+GGG | 0.538247 | 1.1:+59268795 | MS.gene74900:CDS |
| CCATCTTAAACCGAGGCCAT+AGG | 0.544335 | 1.1:-59268657 | None:intergenic |
| CAGGCAGAAAGCAGTCTCAA+AGG | 0.545719 | 1.1:+59263802 | MS.gene74900:CDS |
| CATGCTTGATTCCAGGAAGC+AGG | 0.549332 | 1.1:+59269225 | MS.gene74900:intron |
| GACTCTCTGATTCCATCAAG+AGG | 0.549335 | 1.1:+59270206 | MS.gene74900:CDS |
| AAACTTAGAGATTATACTAA+GGG | 0.553199 | 1.1:+59261617 | MS.gene74900:CDS |
| TGAGAATGATTTGCGCAAAG+TGG | 0.554547 | 1.1:+59261643 | MS.gene74900:CDS |
| TTGCATTTCGCAAACTGTTG+AGG | 0.557428 | 1.1:-59268693 | None:intergenic |
| CTTGGATTCTTATTTAGACA+AGG | 0.558627 | 1.1:+59267664 | MS.gene74900:CDS |
| GGAAGTGGAGCCACTGGTGA+AGG | 0.561875 | 1.1:+59270054 | MS.gene74900:CDS |
| TAACGCCTCATGACATAATG+AGG | 0.563593 | 1.1:-59268748 | None:intergenic |
| GTATGTTGTTAACTTTCTCA+AGG | 0.565046 | 1.1:+59264600 | MS.gene74900:CDS |
| GTTAACTTTCTCAAGGAACA+TGG | 0.568981 | 1.1:+59264607 | MS.gene74900:CDS |
| TCTAAATAAGAATCCAAGCA+TGG | 0.575363 | 1.1:-59267659 | None:intergenic |
| TTAAACTCTGAGTTTGGGGA+TGG | 0.578938 | 1.1:+59268799 | MS.gene74900:CDS |
| CCAATGCTTGTATGTAAGCA+CGG | 0.580622 | 1.1:-59265368 | None:intergenic |
| TGATTTAATCAAGTTTGTCA+AGG | 0.581810 | 1.1:+59269863 | MS.gene74900:CDS |
| TGGTGGGTCTGCATTGAACA+AGG | 0.583690 | 1.1:+59270234 | MS.gene74900:CDS |
| GTCAGAATGTTACCTGATGC+TGG | 0.583853 | 1.1:-59267203 | None:intergenic |
| TGATAAACCTATAACTGTTG+CGG | 0.590582 | 1.1:+59270033 | MS.gene74900:CDS |
| CATATGGAAACTCTGCTAAG+TGG | 0.592668 | 1.1:+59261945 | MS.gene74900:CDS |
| GCTATATGAGGAATCAATGC+CGG | 0.605953 | 1.1:-59266204 | None:intergenic |
| ATAGGTGGCTGAATCCAAGC+TGG | 0.607893 | 1.1:+59262800 | MS.gene74900:intron |
| TTCATCCTCATTATGTCATG+AGG | 0.609555 | 1.1:+59268743 | MS.gene74900:CDS |
| TGTTGCGGAAGTGGAGCCAC+TGG | 0.613209 | 1.1:+59270048 | MS.gene74900:CDS |
| ATGCAAATGTGAAGACATTG+TGG | 0.614201 | 1.1:+59268710 | MS.gene74900:CDS |
| TGGACTTCAACAGGAGCTTG+AGG | 0.615166 | 1.1:+59260654 | MS.gene74900:CDS |
| TTTGATCTAGGAGCATTCGT+TGG | 0.622940 | 1.1:+59260468 | MS.gene74900:CDS |
| TATTATCCCTCCGAGAATGG+TGG | 0.631865 | 1.1:+59262842 | MS.gene74900:CDS |
| TGCAAATGTGAAGACATTGT+GGG | 0.634645 | 1.1:+59268711 | MS.gene74900:CDS |
| TCGAATACCATCTTAAACCG+AGG | 0.634683 | 1.1:-59268664 | None:intergenic |
| GTTTGTAGAAGTGGACACAA+TGG | 0.634918 | 1.1:+59263730 | MS.gene74900:CDS |
| TTATGTCATGAGGCGTTATG+CGG | 0.635931 | 1.1:+59268753 | MS.gene74900:CDS |
| GGATGTCCACCATTCTCGGA+GGG | 0.636579 | 1.1:-59262848 | None:intergenic |
| TTTGAGGCTTAAGAATCGCA+AGG | 0.639267 | 1.1:+59262479 | MS.gene74900:CDS |
| TTCAGCTCATTATGTCTCGG+AGG | 0.639985 | 1.1:+59267630 | MS.gene74900:intron |
| CCATCAAGAGGATCCCTGGT+GGG | 0.646372 | 1.1:+59270218 | MS.gene74900:CDS |
| ATGAGATTAGGAAATATTCG+AGG | 0.647688 | 1.1:+59270284 | MS.gene74900:CDS |
| GGACATCCTTGTTGATGGAG+AGG | 0.650934 | 1.1:+59262863 | MS.gene74900:CDS |
| TCCATCAAGAGGATCCCTGG+TGG | 0.661975 | 1.1:+59270217 | MS.gene74900:CDS |
| CTTGCAAAATCCTTCACCAG+TGG | 0.665825 | 1.1:-59270064 | None:intergenic |
| TTATATTGATACAATGAACA+AGG | 0.679968 | 1.1:+59264660 | MS.gene74900:CDS |
| TGTTCAATGCAGACCCACCA+GGG | 0.681342 | 1.1:-59270231 | None:intergenic |
| ATAATACCTCTCCATCAACA+AGG | 0.682669 | 1.1:-59262869 | None:intergenic |
| TGATGTCGCCTCAAACACAA+TGG | 0.699806 | 1.1:+59260322 | MS.gene74900:CDS |
| AGGATGTCCACCATTCTCGG+AGG | 0.702552 | 1.1:-59262849 | None:intergenic |
| CTGCAGATATAATTTCTGTG+AGG | 0.705047 | 1.1:+59266406 | MS.gene74900:intron |
| GTAGAGACAAGAAGCAACAG+CGG | 0.747225 | 1.1:+59265435 | MS.gene74900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 59260317 | 59270315 | 59260317 | ID=MS.gene74900 |
| chr1.1 | mRNA | 59260317 | 59270315 | 59260317 | ID=MS.gene74900.t1;Parent=MS.gene74900 |
| chr1.1 | exon | 59260317 | 59260343 | 59260317 | ID=MS.gene74900.t1.exon1;Parent=MS.gene74900.t1 |
| chr1.1 | CDS | 59260317 | 59260343 | 59260317 | ID=cds.MS.gene74900.t1;Parent=MS.gene74900.t1 |
| chr1.1 | exon | 59260453 | 59260520 | 59260453 | ID=MS.gene74900.t1.exon2;Parent=MS.gene74900.t1 |
| chr1.1 | CDS | 59260453 | 59260520 | 59260453 | ID=cds.MS.gene74900.t1;Parent=MS.gene74900.t1 |
| chr1.1 | exon | 59260636 | 59260693 | 59260636 | ID=MS.gene74900.t1.exon3;Parent=MS.gene74900.t1 |
| chr1.1 | CDS | 59260636 | 59260693 | 59260636 | ID=cds.MS.gene74900.t1;Parent=MS.gene74900.t1 |
| chr1.1 | exon | 59261587 | 59261682 | 59261587 | ID=MS.gene74900.t1.exon4;Parent=MS.gene74900.t1 |
| chr1.1 | CDS | 59261587 | 59261682 | 59261587 | ID=cds.MS.gene74900.t1;Parent=MS.gene74900.t1 |
| chr1.1 | exon | 59261873 | 59261974 | 59261873 | ID=MS.gene74900.t1.exon5;Parent=MS.gene74900.t1 |
| chr1.1 | CDS | 59261873 | 59261974 | 59261873 | ID=cds.MS.gene74900.t1;Parent=MS.gene74900.t1 |
| chr1.1 | exon | 59262417 | 59262500 | 59262417 | ID=MS.gene74900.t1.exon6;Parent=MS.gene74900.t1 |
| chr1.1 | CDS | 59262417 | 59262500 | 59262417 | ID=cds.MS.gene74900.t1;Parent=MS.gene74900.t1 |
| chr1.1 | exon | 59262804 | 59262884 | 59262804 | ID=MS.gene74900.t1.exon7;Parent=MS.gene74900.t1 |
| chr1.1 | CDS | 59262804 | 59262884 | 59262804 | ID=cds.MS.gene74900.t1;Parent=MS.gene74900.t1 |
| chr1.1 | exon | 59263680 | 59263823 | 59263680 | ID=MS.gene74900.t1.exon8;Parent=MS.gene74900.t1 |
| chr1.1 | CDS | 59263680 | 59263823 | 59263680 | ID=cds.MS.gene74900.t1;Parent=MS.gene74900.t1 |
| chr1.1 | exon | 59263960 | 59264051 | 59263960 | ID=MS.gene74900.t1.exon9;Parent=MS.gene74900.t1 |
| chr1.1 | CDS | 59263960 | 59264051 | 59263960 | ID=cds.MS.gene74900.t1;Parent=MS.gene74900.t1 |
| chr1.1 | exon | 59264600 | 59264681 | 59264600 | ID=MS.gene74900.t1.exon10;Parent=MS.gene74900.t1 |
| chr1.1 | CDS | 59264600 | 59264681 | 59264600 | ID=cds.MS.gene74900.t1;Parent=MS.gene74900.t1 |
| chr1.1 | exon | 59265351 | 59265536 | 59265351 | ID=MS.gene74900.t1.exon11;Parent=MS.gene74900.t1 |
| chr1.1 | CDS | 59265351 | 59265536 | 59265351 | ID=cds.MS.gene74900.t1;Parent=MS.gene74900.t1 |
| chr1.1 | exon | 59266192 | 59266307 | 59266192 | ID=MS.gene74900.t1.exon12;Parent=MS.gene74900.t1 |
| chr1.1 | CDS | 59266192 | 59266307 | 59266192 | ID=cds.MS.gene74900.t1;Parent=MS.gene74900.t1 |
| chr1.1 | exon | 59266412 | 59266470 | 59266412 | ID=MS.gene74900.t1.exon13;Parent=MS.gene74900.t1 |
| chr1.1 | CDS | 59266412 | 59266470 | 59266412 | ID=cds.MS.gene74900.t1;Parent=MS.gene74900.t1 |
| chr1.1 | exon | 59267112 | 59267212 | 59267112 | ID=MS.gene74900.t1.exon14;Parent=MS.gene74900.t1 |
| chr1.1 | CDS | 59267112 | 59267212 | 59267112 | ID=cds.MS.gene74900.t1;Parent=MS.gene74900.t1 |
| chr1.1 | exon | 59267635 | 59267685 | 59267635 | ID=MS.gene74900.t1.exon15;Parent=MS.gene74900.t1 |
| chr1.1 | CDS | 59267635 | 59267685 | 59267635 | ID=cds.MS.gene74900.t1;Parent=MS.gene74900.t1 |
| chr1.1 | exon | 59268646 | 59268825 | 59268646 | ID=MS.gene74900.t1.exon16;Parent=MS.gene74900.t1 |
| chr1.1 | CDS | 59268646 | 59268825 | 59268646 | ID=cds.MS.gene74900.t1;Parent=MS.gene74900.t1 |
| chr1.1 | exon | 59268903 | 59269037 | 59268903 | ID=MS.gene74900.t1.exon17;Parent=MS.gene74900.t1 |
| chr1.1 | CDS | 59268903 | 59269037 | 59268903 | ID=cds.MS.gene74900.t1;Parent=MS.gene74900.t1 |
| chr1.1 | exon | 59269240 | 59269314 | 59269240 | ID=MS.gene74900.t1.exon18;Parent=MS.gene74900.t1 |
| chr1.1 | CDS | 59269240 | 59269314 | 59269240 | ID=cds.MS.gene74900.t1;Parent=MS.gene74900.t1 |
| chr1.1 | exon | 59269837 | 59269894 | 59269837 | ID=MS.gene74900.t1.exon19;Parent=MS.gene74900.t1 |
| chr1.1 | CDS | 59269837 | 59269894 | 59269837 | ID=cds.MS.gene74900.t1;Parent=MS.gene74900.t1 |
| chr1.1 | exon | 59270011 | 59270315 | 59270011 | ID=MS.gene74900.t1.exon20;Parent=MS.gene74900.t1 |
| chr1.1 | CDS | 59270011 | 59270315 | 59270011 | ID=cds.MS.gene74900.t1;Parent=MS.gene74900.t1 |
| Gene Sequence |
| Protein sequence |
