Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77809.t1 | RHN40480.1 | 90.6 | 415 | 24 | 1 | 1 | 415 | 1 | 400 | 7.90E-197 | 696.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77809.t1 | A0A396GHL1 | 90.6 | 415 | 24 | 1 | 1 | 415 | 1 | 400 | 5.7e-197 | 696.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene77809 | 0.881531 | 2.22E-70 | -1.69E-46 |
| MS.gene049356 | MS.gene77809 | 0.810833 | 9.47E-51 | -1.69E-46 |
| MS.gene049369 | MS.gene77809 | 0.817646 | 2.96E-52 | -1.69E-46 |
| MS.gene049758 | MS.gene77809 | 0.812725 | 3.67E-51 | -1.69E-46 |
| MS.gene049907 | MS.gene77809 | 0.812463 | 4.19E-51 | -1.69E-46 |
| MS.gene050301 | MS.gene77809 | 0.828412 | 9.12E-55 | -1.69E-46 |
| MS.gene050397 | MS.gene77809 | 0.821083 | 4.87E-53 | -1.69E-46 |
| MS.gene050432 | MS.gene77809 | 0.801597 | 8.35E-49 | -1.69E-46 |
| MS.gene050520 | MS.gene77809 | 0.813348 | 2.68E-51 | -1.69E-46 |
| MS.gene050538 | MS.gene77809 | 0.811724 | 6.07E-51 | -1.69E-46 |
| MS.gene050593 | MS.gene77809 | 0.805523 | 1.28E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene77809 | 0.855105 | 7.89E-62 | -1.69E-46 |
| MS.gene050812 | MS.gene77809 | 0.809923 | 1.49E-50 | -1.69E-46 |
| MS.gene050971 | MS.gene77809 | 0.823413 | 1.40E-53 | -1.69E-46 |
| MS.gene05105 | MS.gene77809 | 0.840513 | 8.31E-58 | -1.69E-46 |
| MS.gene051255 | MS.gene77809 | 0.870166 | 1.79E-66 | -1.69E-46 |
| MS.gene051360 | MS.gene77809 | 0.839965 | 1.16E-57 | -1.69E-46 |
| MS.gene051387 | MS.gene77809 | 0.84749 | 1.12E-59 | -1.69E-46 |
| MS.gene051525 | MS.gene77809 | 0.821791 | 3.35E-53 | -1.69E-46 |
| MS.gene051877 | MS.gene77809 | 0.841849 | 3.70E-58 | -1.69E-46 |
| MS.gene052011 | MS.gene77809 | -0.821039 | 4.99E-53 | -1.69E-46 |
| MS.gene052188 | MS.gene77809 | 0.85245 | 4.58E-61 | -1.69E-46 |
| MS.gene052253 | MS.gene77809 | 0.826689 | 2.36E-54 | -1.69E-46 |
| MS.gene052310 | MS.gene77809 | 0.811036 | 8.56E-51 | -1.69E-46 |
| MS.gene052322 | MS.gene77809 | 0.806982 | 6.31E-50 | -1.69E-46 |
| MS.gene052326 | MS.gene77809 | 0.800016 | 1.76E-48 | -1.69E-46 |
| MS.gene052421 | MS.gene77809 | 0.803293 | 3.74E-49 | -1.69E-46 |
| MS.gene052485 | MS.gene77809 | 0.838878 | 2.21E-57 | -1.69E-46 |
| MS.gene053107 | MS.gene77809 | 0.815973 | 7.02E-52 | -1.69E-46 |
| MS.gene053169 | MS.gene77809 | 0.820996 | 5.11E-53 | -1.69E-46 |
| MS.gene053209 | MS.gene77809 | 0.824618 | 7.32E-54 | -1.69E-46 |
| MS.gene053758 | MS.gene77809 | 0.801538 | 8.59E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene77809 | 0.808216 | 3.45E-50 | -1.69E-46 |
| MS.gene054010 | MS.gene77809 | 0.821543 | 3.82E-53 | -1.69E-46 |
| MS.gene054011 | MS.gene77809 | 0.82302 | 1.73E-53 | -1.69E-46 |
| MS.gene054012 | MS.gene77809 | 0.829355 | 5.39E-55 | -1.69E-46 |
| MS.gene054013 | MS.gene77809 | 0.825717 | 4.03E-54 | -1.69E-46 |
| MS.gene054123 | MS.gene77809 | 0.829669 | 4.52E-55 | -1.69E-46 |
| MS.gene054556 | MS.gene77809 | 0.839699 | 1.36E-57 | -1.69E-46 |
| MS.gene05505 | MS.gene77809 | 0.821334 | 4.27E-53 | -1.69E-46 |
| MS.gene055116 | MS.gene77809 | 0.802511 | 5.42E-49 | -1.69E-46 |
| MS.gene055277 | MS.gene77809 | 0.852571 | 4.23E-61 | -1.69E-46 |
| MS.gene055390 | MS.gene77809 | 0.833349 | 5.61E-56 | -1.69E-46 |
| MS.gene055422 | MS.gene77809 | 0.804573 | 2.02E-49 | -1.69E-46 |
| MS.gene055604 | MS.gene77809 | 0.840819 | 6.91E-58 | -1.69E-46 |
| MS.gene055909 | MS.gene77809 | 0.811972 | 5.36E-51 | -1.69E-46 |
| MS.gene055911 | MS.gene77809 | 0.819801 | 9.60E-53 | -1.69E-46 |
| MS.gene05592 | MS.gene77809 | 0.801673 | 8.06E-49 | -1.69E-46 |
| MS.gene05602 | MS.gene77809 | 0.848997 | 4.29E-60 | -1.69E-46 |
| MS.gene056191 | MS.gene77809 | 0.804249 | 2.36E-49 | -1.69E-46 |
| MS.gene056407 | MS.gene77809 | 0.857078 | 2.08E-62 | -1.69E-46 |
| MS.gene056410 | MS.gene77809 | 0.858734 | 6.72E-63 | -1.69E-46 |
| MS.gene056511 | MS.gene77809 | 0.808982 | 2.37E-50 | -1.69E-46 |
| MS.gene056659 | MS.gene77809 | 0.825451 | 4.66E-54 | -1.69E-46 |
| MS.gene056796 | MS.gene77809 | 0.864962 | 8.33E-65 | -1.69E-46 |
| MS.gene056902 | MS.gene77809 | 0.866047 | 3.79E-65 | -1.69E-46 |
| MS.gene057011 | MS.gene77809 | 0.800427 | 1.45E-48 | -1.69E-46 |
| MS.gene057124 | MS.gene77809 | 0.80343 | 3.50E-49 | -1.69E-46 |
| MS.gene057448 | MS.gene77809 | 0.807897 | 4.04E-50 | -1.69E-46 |
| MS.gene057450 | MS.gene77809 | 0.808335 | 3.26E-50 | -1.69E-46 |
| MS.gene057749 | MS.gene77809 | 0.808026 | 3.79E-50 | -1.69E-46 |
| MS.gene057823 | MS.gene77809 | 0.821544 | 3.82E-53 | -1.69E-46 |
| MS.gene057926 | MS.gene77809 | 0.800474 | 1.42E-48 | -1.69E-46 |
| MS.gene058002 | MS.gene77809 | 0.805347 | 1.39E-49 | -1.69E-46 |
| MS.gene058007 | MS.gene77809 | 0.808881 | 2.49E-50 | -1.69E-46 |
| MS.gene058082 | MS.gene77809 | 0.836313 | 1.01E-56 | -1.69E-46 |
| MS.gene05811 | MS.gene77809 | 0.865652 | 5.06E-65 | -1.69E-46 |
| MS.gene058120 | MS.gene77809 | 0.800979 | 1.12E-48 | -1.69E-46 |
| MS.gene058233 | MS.gene77809 | 0.805553 | 1.26E-49 | -1.69E-46 |
| MS.gene058293 | MS.gene77809 | 0.816454 | 5.48E-52 | -1.69E-46 |
| MS.gene058323 | MS.gene77809 | 0.813817 | 2.11E-51 | -1.69E-46 |
| MS.gene058365 | MS.gene77809 | 0.825912 | 3.62E-54 | -1.69E-46 |
| MS.gene058376 | MS.gene77809 | 0.809743 | 1.63E-50 | -1.69E-46 |
| MS.gene058660 | MS.gene77809 | 0.845337 | 4.32E-59 | -1.69E-46 |
| MS.gene058700 | MS.gene77809 | 0.828192 | 1.03E-54 | -1.69E-46 |
| MS.gene058948 | MS.gene77809 | 0.845092 | 5.04E-59 | -1.69E-46 |
| MS.gene058993 | MS.gene77809 | 0.813496 | 2.49E-51 | -1.69E-46 |
| MS.gene05907 | MS.gene77809 | 0.859421 | 4.19E-63 | -1.69E-46 |
| MS.gene059294 | MS.gene77809 | 0.815029 | 1.14E-51 | -1.69E-46 |
| MS.gene05934 | MS.gene77809 | 0.803866 | 2.84E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene77809 | 0.845096 | 5.02E-59 | -1.69E-46 |
| MS.gene059536 | MS.gene77809 | 0.800461 | 1.43E-48 | -1.69E-46 |
| MS.gene05959 | MS.gene77809 | 0.815462 | 9.13E-52 | -1.69E-46 |
| MS.gene059676 | MS.gene77809 | 0.849746 | 2.65E-60 | -1.69E-46 |
| MS.gene059688 | MS.gene77809 | 0.844362 | 7.92E-59 | -1.69E-46 |
| MS.gene059692 | MS.gene77809 | 0.829412 | 5.22E-55 | -1.69E-46 |
| MS.gene059695 | MS.gene77809 | 0.834813 | 2.41E-56 | -1.69E-46 |
| MS.gene059711 | MS.gene77809 | 0.816915 | 4.32E-52 | -1.69E-46 |
| MS.gene05984 | MS.gene77809 | 0.833218 | 6.05E-56 | -1.69E-46 |
| MS.gene06037 | MS.gene77809 | 0.808396 | 3.16E-50 | -1.69E-46 |
| MS.gene060569 | MS.gene77809 | 0.820537 | 6.51E-53 | -1.69E-46 |
| MS.gene060804 | MS.gene77809 | 0.823677 | 1.22E-53 | -1.69E-46 |
| MS.gene060837 | MS.gene77809 | 0.857111 | 2.04E-62 | -1.69E-46 |
| MS.gene06090 | MS.gene77809 | 0.83133 | 1.77E-55 | -1.69E-46 |
| MS.gene060986 | MS.gene77809 | 0.804818 | 1.80E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene77809 | 0.801639 | 8.19E-49 | -1.69E-46 |
| MS.gene061154 | MS.gene77809 | 0.872898 | 2.23E-67 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77809.t1 | MTR_8g044030 | 95.012 | 421 | 15 | 1 | 1 | 415 | 1 | 421 | 0.0 | 813 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77809.t1 | AT5G59500 | 57.933 | 416 | 154 | 6 | 1 | 415 | 1 | 396 | 1.21e-165 | 471 |
| MS.gene77809.t1 | AT5G59500 | 71.875 | 288 | 81 | 0 | 128 | 415 | 8 | 295 | 1.17e-162 | 459 |
Find 87 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTATAATGCTTGCAGTTTA+TGG | 0.139273 | 8.1:-60694209 | MS.gene77809:CDS |
| GGCAAGTTCACATCCCATTT+TGG | 0.141939 | 8.1:+60693960 | None:intergenic |
| CCAACTTCTGTTGTGCAATT+TGG | 0.154490 | 8.1:-60693744 | MS.gene77809:CDS |
| CTCGCCGTCATGACCCAAAA+TGG | 0.232595 | 8.1:-60693974 | MS.gene77809:CDS |
| CTTAACTTTGCTTGCATATT+CGG | 0.243735 | 8.1:+60693539 | None:intergenic |
| TTAGCTGGACTTGGATTTAC+TGG | 0.258205 | 8.1:-60694244 | MS.gene77809:CDS |
| TTCATTGGAAATTGAGCATT+TGG | 0.258403 | 8.1:+60694499 | None:intergenic |
| TACTTAAACAAACAACAAAA+AGG | 0.259298 | 8.1:-60694541 | MS.gene77809:CDS |
| CATTGGCTTGCAGCATTTGA+AGG | 0.262632 | 8.1:-60693894 | MS.gene77809:CDS |
| TGCTCTTAAATCCTTTCTTC+TGG | 0.262743 | 8.1:-60694274 | MS.gene77809:CDS |
| TTTATGGGTTATACTGCTTT+TGG | 0.267587 | 8.1:-60694193 | MS.gene77809:CDS |
| GCTTTAATGGTCGAAACTTT+TGG | 0.284591 | 8.1:-60693573 | MS.gene77809:CDS |
| AGAATCTATGCTGGCTTCAT+TGG | 0.292712 | 8.1:+60694484 | None:intergenic |
| ATTGACAACTAATAAATAAA+AGG | 0.297190 | 8.1:+60693504 | None:intergenic |
| CTATAATGCTTGCAGTTTAT+GGG | 0.298189 | 8.1:-60694208 | MS.gene77809:CDS |
| GATGGAGCAATCTTGGAATC+TGG | 0.331382 | 8.1:-60693845 | MS.gene77809:CDS |
| TTGCATATTCGGTGTATATC+TGG | 0.332659 | 8.1:+60693550 | None:intergenic |
| AGCTATGGAGGAGGCTTTAA+TGG | 0.336552 | 8.1:-60693586 | MS.gene77809:CDS |
| GGCAAACATATTTGAGCAAT+TGG | 0.343810 | 8.1:-60694153 | MS.gene77809:CDS |
| GGATGTATGTTAGCTGGACT+TGG | 0.353195 | 8.1:-60694253 | MS.gene77809:CDS |
| CCAGGTGGATGGAGCAATCT+TGG | 0.372620 | 8.1:-60693852 | MS.gene77809:CDS |
| CTACCTTGAAGGCTGGCCTT+TGG | 0.382262 | 8.1:-60694072 | MS.gene77809:CDS |
| TCTTCTGGATGTATGTTAGC+TGG | 0.387873 | 8.1:-60694259 | MS.gene77809:CDS |
| AGTGTCCGGAACCGGTTATA+TGG | 0.389277 | 8.1:-60694008 | MS.gene77809:CDS |
| TTCAGTGCAGGAATCATGAT+TGG | 0.409000 | 8.1:-60693918 | MS.gene77809:CDS |
| AAACCAAAGGCCAGCCTTCA+AGG | 0.411112 | 8.1:+60694069 | None:intergenic |
| AACTAACACGCTTAGGTCTT+GGG | 0.412113 | 8.1:+60694603 | None:intergenic |
| AATCTCCATATAACCGGTTC+CGG | 0.414018 | 8.1:+60694003 | None:intergenic |
| AAACTAACACGCTTAGGTCT+TGG | 0.420283 | 8.1:+60694602 | None:intergenic |
| GTTCCACCAGCTTATTTCAA+TGG | 0.424534 | 8.1:-60694095 | MS.gene77809:CDS |
| CATAATAATCTCCATATAAC+CGG | 0.427250 | 8.1:+60693997 | None:intergenic |
| TCAACGTTAGTGTCCGGAAC+CGG | 0.428166 | 8.1:-60694016 | MS.gene77809:CDS |
| TATTTCAATGGCTACCTTGA+AGG | 0.429721 | 8.1:-60694083 | MS.gene77809:CDS |
| TTGGAAACACATGCTTGGTC+AGG | 0.432668 | 8.1:-60694174 | MS.gene77809:CDS |
| GTCAACTTCACAACATCAAT+TGG | 0.433542 | 8.1:+60694344 | None:intergenic |
| AATTGAAAACTAACACGCTT+AGG | 0.440837 | 8.1:+60694596 | None:intergenic |
| GAAATTGAGCATTTGGGAAG+AGG | 0.452427 | 8.1:+60694506 | None:intergenic |
| GATTTACTGGCCATGGTTGG+TGG | 0.460830 | 8.1:-60694231 | MS.gene77809:CDS |
| TGAAATAAGCTGGTGGAACA+AGG | 0.470249 | 8.1:+60694099 | None:intergenic |
| CCAAATTGCACAACAGAAGT+TGG | 0.474890 | 8.1:+60693744 | None:intergenic |
| TTTCAATTGAATCACAGCTA+TGG | 0.478964 | 8.1:-60694581 | MS.gene77809:CDS |
| TGATTCCTGCACTGAACAAA+AGG | 0.485115 | 8.1:+60693925 | None:intergenic |
| ATGGAGCAATCTTGGAATCT+GGG | 0.486036 | 8.1:-60693844 | MS.gene77809:CDS |
| AGCGTTGTTGAAGAATAAAT+CGG | 0.490943 | 8.1:+60693699 | None:intergenic |
| CATATTAATAGTGCATTTCG+TGG | 0.492792 | 8.1:+60694295 | None:intergenic |
| TCAATGGCTACCTTGAAGGC+TGG | 0.494973 | 8.1:-60694079 | MS.gene77809:CDS |
| GGACTTGGATTTACTGGCCA+TGG | 0.496989 | 8.1:-60694238 | MS.gene77809:CDS |
| GCATGAAATTGTTTGTTGAA+AGG | 0.497147 | 8.1:+60694656 | None:intergenic |
| ATTGGCTTGCAGCATTTGAA+GGG | 0.501471 | 8.1:-60693893 | MS.gene77809:CDS |
| TTGGATTTACTGGCCATGGT+TGG | 0.506088 | 8.1:-60694234 | MS.gene77809:CDS |
| CTTCAAATGCTGCAAGCCAA+TGG | 0.507717 | 8.1:+60693895 | None:intergenic |
| TCATTGGAAATTGAGCATTT+GGG | 0.508386 | 8.1:+60694500 | None:intergenic |
| ATTGATGTTGTGAAGTTGAC+GGG | 0.515309 | 8.1:-60694341 | MS.gene77809:CDS |
| TTATAATGAAGCAGTAGAGT+TGG | 0.517909 | 8.1:+60693810 | None:intergenic |
| CAGGAATCATGATTGGCCAT+TGG | 0.524443 | 8.1:-60693911 | MS.gene77809:CDS |
| TCGCCGTCATGACCCAAAAT+GGG | 0.524963 | 8.1:-60693973 | MS.gene77809:CDS |
| CCTGGTGCGAGGTTAAGCTT+CGG | 0.527503 | 8.1:+60693870 | None:intergenic |
| CTAACATACATCCAGAAGAA+AGG | 0.530527 | 8.1:+60694263 | None:intergenic |
| GGATGGCGCAACAAGCGATA+AGG | 0.531266 | 8.1:+60693720 | None:intergenic |
| TTCAACAAACAATTTCATGC+TGG | 0.532421 | 8.1:-60694653 | MS.gene77809:CDS |
| CCGAAGCTTAACCTCGCACC+AGG | 0.536273 | 8.1:-60693870 | MS.gene77809:CDS |
| CTCACAATAGAGAAACCAAA+AGG | 0.537134 | 8.1:+60694698 | None:intergenic |
| AGGTAGCCATTGAAATAAGC+TGG | 0.540582 | 8.1:+60694089 | None:intergenic |
| TGGATTACTAGAATCTATGC+TGG | 0.542861 | 8.1:+60694475 | None:intergenic |
| TTATAAGCAGAAAGCAGCTA+TGG | 0.543006 | 8.1:-60693601 | MS.gene77809:CDS |
| GAACAAAAGGCGAGACCACA+TGG | 0.550227 | 8.1:+60693938 | None:intergenic |
| CCAAGATTGCTCCATCCACC+TGG | 0.554362 | 8.1:+60693852 | None:intergenic |
| TACAATGAATAGCAGACTCA+AGG | 0.556555 | 8.1:+60693641 | None:intergenic |
| TTAACCTCGCACCAGGTGGA+TGG | 0.576435 | 8.1:-60693863 | MS.gene77809:CDS |
| TGTTGTTTGTTTAAGTAACG+AGG | 0.577958 | 8.1:+60694547 | None:intergenic |
| TGCTCCATCCACCTGGTGCG+AGG | 0.585566 | 8.1:+60693859 | None:intergenic |
| AATTGATGTTGTGAAGTTGA+CGG | 0.587330 | 8.1:-60694342 | MS.gene77809:CDS |
| TTTCGTGGCTGTAGTTATGA+CGG | 0.589274 | 8.1:+60694310 | None:intergenic |
| TAAGCAGAAAGCAGCTATGG+AGG | 0.590622 | 8.1:-60693598 | MS.gene77809:CDS |
| GCAGAAAGCAGCTATGGAGG+AGG | 0.602669 | 8.1:-60693595 | MS.gene77809:CDS |
| GAGTCTGCTATTCATTGTAG+CGG | 0.631042 | 8.1:-60693637 | MS.gene77809:CDS |
| GAAATAAGCTGGTGGAACAA+GGG | 0.631852 | 8.1:+60694100 | None:intergenic |
| AGCATTATAGCCACCAACCA+TGG | 0.636978 | 8.1:+60694221 | None:intergenic |
| ACAATGAATAGCAGACTCAA+GGG | 0.637477 | 8.1:+60693642 | None:intergenic |
| AAGCTTAACCTCGCACCAGG+TGG | 0.645226 | 8.1:-60693867 | MS.gene77809:CDS |
| TAGCCATTGAAATAAGCTGG+TGG | 0.655130 | 8.1:+60694092 | None:intergenic |
| TTGTTGAAGAATAAATCGGA+TGG | 0.662311 | 8.1:+60693703 | None:intergenic |
| TAACACGCTTAGGTCTTGGG+TGG | 0.680734 | 8.1:+60694606 | None:intergenic |
| ATACTTAGCAAGATACAATG+TGG | 0.686391 | 8.1:+60693785 | None:intergenic |
| GGGATGTGAACTTGCCCATG+TGG | 0.690270 | 8.1:-60693953 | MS.gene77809:CDS |
| AACAAAAGGCGAGACCACAT+GGG | 0.690915 | 8.1:+60693939 | None:intergenic |
| TTGATGTTGTGAAGTTGACG+GGG | 0.752016 | 8.1:-60694340 | MS.gene77809:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTAAACAAACAACAAAAA+GGG | - | chr8.1:60693709-60693728 | MS.gene77809:CDS | 20.0% |
| !! | TACTTAAACAAACAACAAAA+AGG | - | chr8.1:60693708-60693727 | MS.gene77809:CDS | 20.0% |
| !! | TATACAAAAAAGAAAACCAA+AGG | + | chr8.1:60694196-60694215 | None:intergenic | 20.0% |
| ! | CATAATAATCTCCATATAAC+CGG | + | chr8.1:60694255-60694274 | None:intergenic | 25.0% |
| ! | TAAGTATTCAGAAAAAGTAG+TGG | - | chr8.1:60694480-60694499 | MS.gene77809:CDS | 25.0% |
| !!! | TTTTTGAAGTACTTTAGAAC+TGG | + | chr8.1:60693797-60693816 | None:intergenic | 25.0% |
| AATTGAAAACTAACACGCTT+AGG | + | chr8.1:60693656-60693675 | None:intergenic | 30.0% | |
| AATTGATGTTGTGAAGTTGA+CGG | - | chr8.1:60693907-60693926 | MS.gene77809:CDS | 30.0% | |
| AGCGTTGTTGAAGAATAAAT+CGG | + | chr8.1:60694553-60694572 | None:intergenic | 30.0% | |
| ATACTTAGCAAGATACAATG+TGG | + | chr8.1:60694467-60694486 | None:intergenic | 30.0% | |
| CATATTAATAGTGCATTTCG+TGG | + | chr8.1:60693957-60693976 | None:intergenic | 30.0% | |
| CTATAATGCTTGCAGTTTAT+GGG | - | chr8.1:60694041-60694060 | MS.gene77809:CDS | 30.0% | |
| CTTAACTTTGCTTGCATATT+CGG | + | chr8.1:60694713-60694732 | None:intergenic | 30.0% | |
| GTTTAAGTAACGAGGAAAAA+TGG | + | chr8.1:60693697-60693716 | None:intergenic | 30.0% | |
| TCATTGGAAATTGAGCATTT+GGG | + | chr8.1:60693752-60693771 | None:intergenic | 30.0% | |
| TTATAATGAAGCAGTAGAGT+TGG | + | chr8.1:60694442-60694461 | None:intergenic | 30.0% | |
| TTCAACAAACAATTTCATGC+TGG | - | chr8.1:60693596-60693615 | MS.gene77809:CDS | 30.0% | |
| TTCATTGGAAATTGAGCATT+TGG | + | chr8.1:60693753-60693772 | None:intergenic | 30.0% | |
| TTGTTGAAGAATAAATCGGA+TGG | + | chr8.1:60694549-60694568 | None:intergenic | 30.0% | |
| TTTCAATTGAATCACAGCTA+TGG | - | chr8.1:60693668-60693687 | MS.gene77809:CDS | 30.0% | |
| ! | GCATGAAATTGTTTGTTGAA+AGG | + | chr8.1:60693596-60693615 | None:intergenic | 30.0% |
| ! | TCGTTACATCAACTTTTACA+TGG | - | chr8.1:60694122-60694141 | MS.gene77809:CDS | 30.0% |
| ! | TGTTGTTTGTTTAAGTAACG+AGG | + | chr8.1:60693705-60693724 | None:intergenic | 30.0% |
| !! | TTTATGGGTTATACTGCTTT+TGG | - | chr8.1:60694056-60694075 | MS.gene77809:CDS | 30.0% |
| ACAATGAATAGCAGACTCAA+GGG | + | chr8.1:60694610-60694629 | None:intergenic | 35.0% | |
| ATTGATGTTGTGAAGTTGAC+GGG | - | chr8.1:60693908-60693927 | MS.gene77809:CDS | 35.0% | |
| CTAACATACATCCAGAAGAA+AGG | + | chr8.1:60693989-60694008 | None:intergenic | 35.0% | |
| CTCACAATAGAGAAACCAAA+AGG | + | chr8.1:60693554-60693573 | None:intergenic | 35.0% | |
| GCTATAATGCTTGCAGTTTA+TGG | - | chr8.1:60694040-60694059 | MS.gene77809:CDS | 35.0% | |
| GGCAAACATATTTGAGCAAT+TGG | - | chr8.1:60694096-60694115 | MS.gene77809:CDS | 35.0% | |
| GTCAACTTCACAACATCAAT+TGG | + | chr8.1:60693908-60693927 | None:intergenic | 35.0% | |
| TACAATGAATAGCAGACTCA+AGG | + | chr8.1:60694611-60694630 | None:intergenic | 35.0% | |
| TATTTCAATGGCTACCTTGA+AGG | - | chr8.1:60694166-60694185 | MS.gene77809:CDS | 35.0% | |
| TGCTCTTAAATCCTTTCTTC+TGG | - | chr8.1:60693975-60693994 | MS.gene77809:CDS | 35.0% | |
| TGGATTACTAGAATCTATGC+TGG | + | chr8.1:60693777-60693796 | None:intergenic | 35.0% | |
| TTATAAGCAGAAAGCAGCTA+TGG | - | chr8.1:60694648-60694667 | MS.gene77809:CDS | 35.0% | |
| ! | CACTCAAAAACTGTACCTTT+TGG | - | chr8.1:60693536-60693555 | MS.gene77809:CDS | 35.0% |
| ! | GCTTTAATGGTCGAAACTTT+TGG | - | chr8.1:60694676-60694695 | MS.gene77809:CDS | 35.0% |
| ! | TTTTCTTCAACGTTAGTGTC+CGG | - | chr8.1:60694227-60694246 | MS.gene77809:CDS | 35.0% |
| !! | TTGCATATTCGGTGTATATC+TGG | + | chr8.1:60694702-60694721 | None:intergenic | 35.0% |
| AAACTAACACGCTTAGGTCT+TGG | + | chr8.1:60693650-60693669 | None:intergenic | 40.0% | |
| AACTAACACGCTTAGGTCTT+GGG | + | chr8.1:60693649-60693668 | None:intergenic | 40.0% | |
| AGGTAGCCATTGAAATAAGC+TGG | + | chr8.1:60694163-60694182 | None:intergenic | 40.0% | |
| ATGGAGCAATCTTGGAATCT+GGG | - | chr8.1:60694405-60694424 | MS.gene77809:CDS | 40.0% | |
| CCAAATTGCACAACAGAAGT+TGG | + | chr8.1:60694508-60694527 | None:intergenic | 40.0% | |
| CCAACTTCTGTTGTGCAATT+TGG | - | chr8.1:60694505-60694524 | MS.gene77809:CDS | 40.0% | |
| GAAATAAGCTGGTGGAACAA+GGG | + | chr8.1:60694152-60694171 | None:intergenic | 40.0% | |
| GAAATTGAGCATTTGGGAAG+AGG | + | chr8.1:60693746-60693765 | None:intergenic | 40.0% | |
| GAGTCTGCTATTCATTGTAG+CGG | - | chr8.1:60694612-60694631 | MS.gene77809:CDS | 40.0% | |
| GTTCCACCAGCTTATTTCAA+TGG | - | chr8.1:60694154-60694173 | MS.gene77809:CDS | 40.0% | |
| TAGCCATTGAAATAAGCTGG+TGG | + | chr8.1:60694160-60694179 | None:intergenic | 40.0% | |
| TCTTCTGGATGTATGTTAGC+TGG | - | chr8.1:60693990-60694009 | MS.gene77809:CDS | 40.0% | |
| TGAAATAAGCTGGTGGAACA+AGG | + | chr8.1:60694153-60694172 | None:intergenic | 40.0% | |
| TGATTCCTGCACTGAACAAA+AGG | + | chr8.1:60694327-60694346 | None:intergenic | 40.0% | |
| TTAGCTGGACTTGGATTTAC+TGG | - | chr8.1:60694005-60694024 | MS.gene77809:CDS | 40.0% | |
| TTCAGTGCAGGAATCATGAT+TGG | - | chr8.1:60694331-60694350 | MS.gene77809:CDS | 40.0% | |
| TTGATGTTGTGAAGTTGACG+GGG | - | chr8.1:60693909-60693928 | MS.gene77809:CDS | 40.0% | |
| TTTCGTGGCTGTAGTTATGA+CGG | + | chr8.1:60693942-60693961 | None:intergenic | 40.0% | |
| ! | AATCTCCATATAACCGGTTC+CGG | + | chr8.1:60694249-60694268 | None:intergenic | 40.0% |
| ! | GCAAGTTCACATCCCATTTT+GGG | + | chr8.1:60694291-60694310 | None:intergenic | 40.0% |
| !! | AGAATCTATGCTGGCTTCAT+TGG | + | chr8.1:60693768-60693787 | None:intergenic | 40.0% |
| !! | ATTGGCTTGCAGCATTTGAA+GGG | - | chr8.1:60694356-60694375 | MS.gene77809:CDS | 40.0% |
| !! | TGCTTTTGGAAACACATGCT+TGG | - | chr8.1:60694070-60694089 | MS.gene77809:CDS | 40.0% |
| AACAAAAGGCGAGACCACAT+GGG | + | chr8.1:60694313-60694332 | None:intergenic | 45.0% | |
| AGCATTATAGCCACCAACCA+TGG | + | chr8.1:60694031-60694050 | None:intergenic | 45.0% | |
| CTTCAAATGCTGCAAGCCAA+TGG | + | chr8.1:60694357-60694376 | None:intergenic | 45.0% | |
| GATGGAGCAATCTTGGAATC+TGG | - | chr8.1:60694404-60694423 | MS.gene77809:CDS | 45.0% | |
| GGATGTATGTTAGCTGGACT+TGG | - | chr8.1:60693996-60694015 | MS.gene77809:CDS | 45.0% | |
| TAAGCAGAAAGCAGCTATGG+AGG | - | chr8.1:60694651-60694670 | MS.gene77809:CDS | 45.0% | |
| TTGGAAACACATGCTTGGTC+AGG | - | chr8.1:60694075-60694094 | MS.gene77809:CDS | 45.0% | |
| TTGGATTTACTGGCCATGGT+TGG | - | chr8.1:60694015-60694034 | MS.gene77809:CDS | 45.0% | |
| ! | AGCTATGGAGGAGGCTTTAA+TGG | - | chr8.1:60694663-60694682 | MS.gene77809:CDS | 45.0% |
| ! | CAGGAATCATGATTGGCCAT+TGG | - | chr8.1:60694338-60694357 | MS.gene77809:CDS | 45.0% |
| ! | GGCAAGTTCACATCCCATTT+TGG | + | chr8.1:60694292-60694311 | None:intergenic | 45.0% |
| !! | CATCCCATTTTGGGTCATGA+CGG | + | chr8.1:60694282-60694301 | None:intergenic | 45.0% |
| !! | CATTGGCTTGCAGCATTTGA+AGG | - | chr8.1:60694355-60694374 | MS.gene77809:CDS | 45.0% |
| AAACCAAAGGCCAGCCTTCA+AGG | + | chr8.1:60694183-60694202 | None:intergenic | 50.0% | |
| AGTGTCCGGAACCGGTTATA+TGG | - | chr8.1:60694241-60694260 | MS.gene77809:CDS | 50.0% | |
| GAACAAAAGGCGAGACCACA+TGG | + | chr8.1:60694314-60694333 | None:intergenic | 50.0% | |
| GATTTACTGGCCATGGTTGG+TGG | - | chr8.1:60694018-60694037 | MS.gene77809:CDS | 50.0% | |
| GGACTTGGATTTACTGGCCA+TGG | - | chr8.1:60694011-60694030 | MS.gene77809:CDS | 50.0% | |
| TAACACGCTTAGGTCTTGGG+TGG | + | chr8.1:60693646-60693665 | None:intergenic | 50.0% | |
| TCAACGTTAGTGTCCGGAAC+CGG | - | chr8.1:60694233-60694252 | MS.gene77809:CDS | 50.0% | |
| TCAATGGCTACCTTGAAGGC+TGG | - | chr8.1:60694170-60694189 | MS.gene77809:CDS | 50.0% | |
| TCGCCGTCATGACCCAAAAT+GGG | - | chr8.1:60694276-60694295 | MS.gene77809:CDS | 50.0% | |
| ! | TCTCGCCTTTTGTTCAGTGC+AGG | - | chr8.1:60694319-60694338 | MS.gene77809:CDS | 50.0% |
| AAGCTTAACCTCGCACCAGG+TGG | - | chr8.1:60694382-60694401 | MS.gene77809:CDS | 55.0% | |
| CCAAGATTGCTCCATCCACC+TGG | + | chr8.1:60694400-60694419 | None:intergenic | 55.0% | |
| CCAGGTGGATGGAGCAATCT+TGG | - | chr8.1:60694397-60694416 | MS.gene77809:CDS | 55.0% | |
| CCTGGTGCGAGGTTAAGCTT+CGG | + | chr8.1:60694382-60694401 | None:intergenic | 55.0% | |
| CTCGCCGTCATGACCCAAAA+TGG | - | chr8.1:60694275-60694294 | MS.gene77809:CDS | 55.0% | |
| GCAGAAAGCAGCTATGGAGG+AGG | - | chr8.1:60694654-60694673 | MS.gene77809:CDS | 55.0% | |
| GGATGGCGCAACAAGCGATA+AGG | + | chr8.1:60694532-60694551 | None:intergenic | 55.0% | |
| GGGATGTGAACTTGCCCATG+TGG | - | chr8.1:60694296-60694315 | MS.gene77809:CDS | 55.0% | |
| TTAACCTCGCACCAGGTGGA+TGG | - | chr8.1:60694386-60694405 | MS.gene77809:CDS | 55.0% | |
| !! | CTACCTTGAAGGCTGGCCTT+TGG | - | chr8.1:60694177-60694196 | MS.gene77809:CDS | 55.0% |
| CCGAAGCTTAACCTCGCACC+AGG | - | chr8.1:60694379-60694398 | MS.gene77809:CDS | 60.0% | |
| TGCTCCATCCACCTGGTGCG+AGG | + | chr8.1:60694393-60694412 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 60693512 | 60694759 | 60693512 | ID=MS.gene77809 |
| chr8.1 | mRNA | 60693512 | 60694759 | 60693512 | ID=MS.gene77809.t1;Parent=MS.gene77809 |
| chr8.1 | exon | 60693512 | 60694759 | 60693512 | ID=MS.gene77809.t1.exon1;Parent=MS.gene77809.t1 |
| chr8.1 | CDS | 60693512 | 60694759 | 60693512 | ID=cds.MS.gene77809.t1;Parent=MS.gene77809.t1 |
| Gene Sequence |
| Protein sequence |
