Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81256.t1 | RHN58085.1 | 99.2 | 124 | 1 | 0 | 1 | 124 | 86 | 209 | 1.40E-62 | 248.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81256.t1 | Q9ZW34 | 83.1 | 124 | 21 | 0 | 1 | 124 | 330 | 453 | 1.8e-55 | 216.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81256.t1 | G7K4W1 | 99.2 | 124 | 1 | 0 | 1 | 124 | 330 | 453 | 9.8e-63 | 248.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene81256 | 0.826751 | 2.28E-54 | -1.69E-46 |
| MS.gene049159 | MS.gene81256 | 0.847175 | 1.37E-59 | -1.69E-46 |
| MS.gene049190 | MS.gene81256 | 0.810769 | 9.78E-51 | -1.69E-46 |
| MS.gene049254 | MS.gene81256 | 0.836881 | 7.22E-57 | -1.69E-46 |
| MS.gene049404 | MS.gene81256 | 0.851524 | 8.39E-61 | -1.69E-46 |
| MS.gene049435 | MS.gene81256 | 0.820372 | 7.10E-53 | -1.69E-46 |
| MS.gene049501 | MS.gene81256 | 0.827125 | 1.86E-54 | -1.69E-46 |
| MS.gene049850 | MS.gene81256 | 0.830695 | 2.54E-55 | -1.69E-46 |
| MS.gene049873 | MS.gene81256 | 0.81315 | 2.96E-51 | -1.69E-46 |
| MS.gene050020 | MS.gene81256 | 0.814372 | 1.59E-51 | -1.69E-46 |
| MS.gene050156 | MS.gene81256 | 0.800098 | 1.69E-48 | -1.69E-46 |
| MS.gene05016 | MS.gene81256 | 0.823942 | 1.06E-53 | -1.69E-46 |
| MS.gene050438 | MS.gene81256 | 0.814066 | 1.86E-51 | -1.69E-46 |
| MS.gene050442 | MS.gene81256 | 0.832361 | 9.88E-56 | -1.69E-46 |
| MS.gene050559 | MS.gene81256 | 0.818687 | 1.72E-52 | -1.69E-46 |
| MS.gene050561 | MS.gene81256 | 0.823248 | 1.53E-53 | -1.69E-46 |
| MS.gene050562 | MS.gene81256 | 0.808821 | 2.57E-50 | -1.69E-46 |
| MS.gene050719 | MS.gene81256 | 0.826516 | 2.60E-54 | -1.69E-46 |
| MS.gene050721 | MS.gene81256 | 0.824586 | 7.45E-54 | -1.69E-46 |
| MS.gene050724 | MS.gene81256 | 0.82063 | 6.20E-53 | -1.69E-46 |
| MS.gene050780 | MS.gene81256 | 0.825205 | 5.32E-54 | -1.69E-46 |
| MS.gene050807 | MS.gene81256 | 0.815999 | 6.93E-52 | -1.69E-46 |
| MS.gene050844 | MS.gene81256 | 0.835466 | 1.65E-56 | -1.69E-46 |
| MS.gene050959 | MS.gene81256 | 0.810595 | 1.07E-50 | -1.69E-46 |
| MS.gene051198 | MS.gene81256 | 0.840203 | 1.00E-57 | -1.69E-46 |
| MS.gene051247 | MS.gene81256 | 0.837871 | 4.02E-57 | -1.69E-46 |
| MS.gene051265 | MS.gene81256 | 0.821617 | 3.67E-53 | -1.69E-46 |
| MS.gene051279 | MS.gene81256 | 0.837712 | 4.42E-57 | -1.69E-46 |
| MS.gene051328 | MS.gene81256 | 0.808904 | 2.46E-50 | -1.69E-46 |
| MS.gene051388 | MS.gene81256 | 0.822705 | 2.05E-53 | -1.69E-46 |
| MS.gene05157 | MS.gene81256 | 0.807687 | 4.47E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene81256 | 0.830316 | 3.15E-55 | -1.69E-46 |
| MS.gene051720 | MS.gene81256 | 0.826231 | 3.04E-54 | -1.69E-46 |
| MS.gene051744 | MS.gene81256 | 0.846383 | 2.25E-59 | -1.69E-46 |
| MS.gene051800 | MS.gene81256 | 0.801915 | 7.19E-49 | -1.69E-46 |
| MS.gene051957 | MS.gene81256 | 0.808667 | 2.77E-50 | -1.69E-46 |
| MS.gene052020 | MS.gene81256 | 0.859815 | 3.19E-63 | -1.69E-46 |
| MS.gene052323 | MS.gene81256 | 0.812188 | 4.81E-51 | -1.69E-46 |
| MS.gene052516 | MS.gene81256 | 0.844053 | 9.59E-59 | -1.69E-46 |
| MS.gene052519 | MS.gene81256 | 0.844885 | 5.73E-59 | -1.69E-46 |
| MS.gene052582 | MS.gene81256 | 0.809556 | 1.79E-50 | -1.69E-46 |
| MS.gene052584 | MS.gene81256 | 0.812571 | 3.97E-51 | -1.69E-46 |
| MS.gene052611 | MS.gene81256 | 0.859704 | 3.44E-63 | -1.69E-46 |
| MS.gene052612 | MS.gene81256 | 0.819882 | 9.20E-53 | -1.69E-46 |
| MS.gene052613 | MS.gene81256 | 0.817328 | 3.49E-52 | -1.69E-46 |
| MS.gene052665 | MS.gene81256 | 0.810795 | 9.65E-51 | -1.69E-46 |
| MS.gene052773 | MS.gene81256 | 0.811392 | 7.16E-51 | -1.69E-46 |
| MS.gene052863 | MS.gene81256 | 0.852303 | 5.04E-61 | -1.69E-46 |
| MS.gene052867 | MS.gene81256 | 0.802858 | 4.59E-49 | -1.69E-46 |
| MS.gene052896 | MS.gene81256 | 0.835831 | 1.33E-56 | -1.69E-46 |
| MS.gene053008 | MS.gene81256 | 0.808923 | 2.44E-50 | -1.69E-46 |
| MS.gene053079 | MS.gene81256 | 0.809861 | 1.53E-50 | -1.69E-46 |
| MS.gene053221 | MS.gene81256 | 0.804505 | 2.09E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene81256 | 0.855583 | 5.72E-62 | -1.69E-46 |
| MS.gene053565 | MS.gene81256 | 0.800003 | 1.77E-48 | -1.69E-46 |
| MS.gene053599 | MS.gene81256 | 0.816343 | 5.81E-52 | -1.69E-46 |
| MS.gene053883 | MS.gene81256 | 0.812868 | 3.41E-51 | -1.69E-46 |
| MS.gene053998 | MS.gene81256 | 0.827089 | 1.90E-54 | -1.69E-46 |
| MS.gene05415 | MS.gene81256 | 0.815187 | 1.05E-51 | -1.69E-46 |
| MS.gene054236 | MS.gene81256 | 0.818179 | 2.24E-52 | -1.69E-46 |
| MS.gene054467 | MS.gene81256 | 0.820688 | 6.01E-53 | -1.69E-46 |
| MS.gene054472 | MS.gene81256 | 0.805737 | 1.16E-49 | -1.69E-46 |
| MS.gene054559 | MS.gene81256 | 0.802278 | 6.05E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene81256 | 0.802765 | 4.80E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene81256 | 0.850475 | 1.66E-60 | -1.69E-46 |
| MS.gene054775 | MS.gene81256 | 0.823357 | 1.45E-53 | -1.69E-46 |
| MS.gene054801 | MS.gene81256 | 0.805365 | 1.38E-49 | -1.69E-46 |
| MS.gene055227 | MS.gene81256 | 0.814051 | 1.88E-51 | -1.69E-46 |
| MS.gene055228 | MS.gene81256 | 0.819064 | 1.41E-52 | -1.69E-46 |
| MS.gene055357 | MS.gene81256 | 0.83716 | 6.12E-57 | -1.69E-46 |
| MS.gene055465 | MS.gene81256 | 0.822186 | 2.71E-53 | -1.69E-46 |
| MS.gene055466 | MS.gene81256 | 0.842495 | 2.50E-58 | -1.69E-46 |
| MS.gene055468 | MS.gene81256 | 0.804582 | 2.02E-49 | -1.69E-46 |
| MS.gene055512 | MS.gene81256 | 0.838246 | 3.22E-57 | -1.69E-46 |
| MS.gene055778 | MS.gene81256 | 0.839077 | 1.97E-57 | -1.69E-46 |
| MS.gene055818 | MS.gene81256 | 0.859066 | 5.35E-63 | -1.69E-46 |
| MS.gene055890 | MS.gene81256 | 0.808607 | 2.85E-50 | -1.69E-46 |
| MS.gene055926 | MS.gene81256 | 0.803779 | 2.96E-49 | -1.69E-46 |
| MS.gene05604 | MS.gene81256 | 0.818939 | 1.51E-52 | -1.69E-46 |
| MS.gene056050 | MS.gene81256 | 0.812834 | 3.47E-51 | -1.69E-46 |
| MS.gene056173 | MS.gene81256 | 0.811654 | 6.28E-51 | -1.69E-46 |
| MS.gene056174 | MS.gene81256 | 0.819367 | 1.21E-52 | -1.69E-46 |
| MS.gene056366 | MS.gene81256 | 0.835097 | 2.05E-56 | -1.69E-46 |
| MS.gene056498 | MS.gene81256 | 0.804901 | 1.73E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene81256 | 0.800179 | 1.63E-48 | -1.69E-46 |
| MS.gene056553 | MS.gene81256 | 0.83361 | 4.83E-56 | -1.69E-46 |
| MS.gene056595 | MS.gene81256 | 0.82615 | 3.18E-54 | -1.69E-46 |
| MS.gene056643 | MS.gene81256 | 0.80402 | 2.64E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene81256 | 0.826221 | 3.06E-54 | -1.69E-46 |
| MS.gene057314 | MS.gene81256 | 0.849659 | 2.80E-60 | -1.69E-46 |
| MS.gene057444 | MS.gene81256 | 0.840604 | 7.87E-58 | -1.69E-46 |
| MS.gene057693 | MS.gene81256 | 0.829296 | 5.57E-55 | -1.69E-46 |
| MS.gene057869 | MS.gene81256 | 0.847918 | 8.53E-60 | -1.69E-46 |
| MS.gene057915 | MS.gene81256 | 0.840045 | 1.10E-57 | -1.69E-46 |
| MS.gene058010 | MS.gene81256 | 0.812002 | 5.28E-51 | -1.69E-46 |
| MS.gene058037 | MS.gene81256 | 0.84504 | 5.20E-59 | -1.69E-46 |
| MS.gene058625 | MS.gene81256 | 0.827269 | 1.72E-54 | -1.69E-46 |
| MS.gene058636 | MS.gene81256 | 0.809572 | 1.77E-50 | -1.69E-46 |
| MS.gene058829 | MS.gene81256 | 0.803087 | 4.12E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene81256 | 0.835898 | 1.28E-56 | -1.69E-46 |
| MS.gene059015 | MS.gene81256 | 0.826649 | 2.42E-54 | -1.69E-46 |
| MS.gene059272 | MS.gene81256 | 0.803857 | 2.85E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene81256 | 0.823376 | 1.43E-53 | -1.69E-46 |
| MS.gene059625 | MS.gene81256 | 0.819264 | 1.27E-52 | -1.69E-46 |
| MS.gene059725 | MS.gene81256 | 0.811344 | 7.34E-51 | -1.69E-46 |
| MS.gene059842 | MS.gene81256 | 0.83008 | 3.59E-55 | -1.69E-46 |
| MS.gene059937 | MS.gene81256 | 0.813312 | 2.73E-51 | -1.69E-46 |
| MS.gene060167 | MS.gene81256 | 0.81766 | 2.94E-52 | -1.69E-46 |
| MS.gene060312 | MS.gene81256 | 0.814472 | 1.51E-51 | -1.69E-46 |
| MS.gene060322 | MS.gene81256 | 0.836781 | 7.65E-57 | -1.69E-46 |
| MS.gene060429 | MS.gene81256 | 0.826746 | 2.29E-54 | -1.69E-46 |
| MS.gene060521 | MS.gene81256 | 0.807741 | 4.36E-50 | -1.69E-46 |
| MS.gene06052 | MS.gene81256 | 0.808715 | 2.70E-50 | -1.69E-46 |
| MS.gene060587 | MS.gene81256 | 0.842659 | 2.26E-58 | -1.69E-46 |
| MS.gene060637 | MS.gene81256 | 0.801901 | 7.24E-49 | -1.69E-46 |
| MS.gene060689 | MS.gene81256 | 0.816555 | 5.21E-52 | -1.69E-46 |
| MS.gene060690 | MS.gene81256 | 0.802807 | 4.71E-49 | -1.69E-46 |
| MS.gene060803 | MS.gene81256 | 0.825723 | 4.01E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 35 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATCTTCTATTGATACAAT+TGG | 0.313466 | 5.2:-81344079 | None:intergenic |
| TTGTAATGCTCTTCTTCTTA+AGG | 0.320244 | 5.2:+81344829 | MS.gene81256:CDS |
| ACAGGCAAAGGAAGCGCATT+GGG | 0.339363 | 5.2:+81345365 | MS.gene81256:CDS |
| ATCCATTTGACAAGGAAGAT+TGG | 0.376004 | 5.2:+81344098 | MS.gene81256:CDS |
| TGAATGATTCTGCAGGTAGT+AGG | 0.386036 | 5.2:+81344749 | MS.gene81256:intron |
| CTTTCACATTCTTATGCTGA+TGG | 0.397629 | 5.2:+81345523 | MS.gene81256:CDS |
| TCCATTTGACAAGGAAGATT+GGG | 0.410260 | 5.2:+81344099 | MS.gene81256:CDS |
| TCCCAATCTTCCTTGTCAAA+TGG | 0.418960 | 5.2:-81344100 | None:intergenic |
| TTCATAGCTGATTTATCCGT+TGG | 0.433997 | 5.2:+81345429 | MS.gene81256:CDS |
| GATCTTCTATTGATACAATT+GGG | 0.456790 | 5.2:-81344078 | None:intergenic |
| GGTCATTGAAGTGGTCAAAC+AGG | 0.458747 | 5.2:+81345347 | MS.gene81256:CDS |
| CTCAAGCCTTGGAATTTGCC+AGG | 0.463723 | 5.2:+81344138 | MS.gene81256:CDS |
| GAATGATTCTGCAGGTAGTA+GGG | 0.464232 | 5.2:+81344750 | MS.gene81256:intron |
| ATCAAGTATATCTCAAGCCT+TGG | 0.478687 | 5.2:+81344127 | MS.gene81256:CDS |
| CCTCGGTCACAGTTCCAACT+TGG | 0.498921 | 5.2:-81345326 | None:intergenic |
| GCTGTTGGTCAGATTAAAGC+AGG | 0.505927 | 5.2:+81345456 | MS.gene81256:CDS |
| TTATCCGTTGGCCTTGCTGT+TGG | 0.541949 | 5.2:+81345441 | MS.gene81256:CDS |
| AACAGGCAAAGGAAGCGCAT+TGG | 0.543307 | 5.2:+81345364 | MS.gene81256:CDS |
| GTGATCCAGGTCAACCAAGT+TGG | 0.555500 | 5.2:+81345312 | MS.gene81256:intron |
| TCTAATCGCTCTCCTCTGCA+AGG | 0.555562 | 5.2:-81345483 | None:intergenic |
| ATAATACCTGGCAAATTCCA+AGG | 0.562772 | 5.2:-81344144 | None:intergenic |
| AGGCAAAGGAAGCGCATTGG+GGG | 0.571983 | 5.2:+81345367 | MS.gene81256:CDS |
| TGAAGTGGTCAAACAGGCAA+AGG | 0.579709 | 5.2:+81345353 | MS.gene81256:CDS |
| CCAAGTTGGAACTGTGACCG+AGG | 0.585510 | 5.2:+81345326 | MS.gene81256:CDS |
| CAGGCAAAGGAAGCGCATTG+GGG | 0.596386 | 5.2:+81345366 | MS.gene81256:CDS |
| AATGATTCTGCAGGTAGTAG+GGG | 0.598973 | 5.2:+81344751 | MS.gene81256:intron |
| TTTGACCACTTCAATGACCT+CGG | 0.604404 | 5.2:-81345343 | None:intergenic |
| GTGGTGACATCTCACAGAAG+TGG | 0.607193 | 5.2:+81345390 | MS.gene81256:CDS |
| AAAGCAGGCGCTCCTTGCAG+AGG | 0.636542 | 5.2:+81345471 | MS.gene81256:CDS |
| TGTGACCGAGGTCATTGAAG+TGG | 0.639474 | 5.2:+81345338 | MS.gene81256:CDS |
| CTTTAATCTGACCAACAGCA+AGG | 0.642755 | 5.2:-81345452 | None:intergenic |
| GGCAAAGGAAGCGCATTGGG+GGG | 0.654274 | 5.2:+81345368 | MS.gene81256:CDS |
| ATAAGAATGTGAAAGAGACC+TGG | 0.665974 | 5.2:-81345515 | None:intergenic |
| CTGACCAACAGCAAGGCCAA+CGG | 0.676271 | 5.2:-81345445 | None:intergenic |
| AATAGAAGATCCATTTGACA+AGG | 0.686135 | 5.2:+81344090 | MS.gene81256:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGCATTTATATGATAAAAAA+TGG | - | chr5.2:81344949-81344968 | None:intergenic | 15.0% |
| !!! | TTCTTTTATGCTATTATTAT+TGG | + | chr5.2:81344268-81344287 | MS.gene81256:intron | 15.0% |
| !!! | TTGAAAAGTTAACATTTTAT+TGG | + | chr5.2:81344170-81344189 | MS.gene81256:intron | 15.0% |
| !! | AATGAAAACTAATAACAAAC+AGG | + | chr5.2:81344561-81344580 | MS.gene81256:intron | 20.0% |
| !! | ACACTTAAAAAAGAAAGATA+TGG | + | chr5.2:81344437-81344456 | MS.gene81256:intron | 20.0% |
| !! | GTAACATTAAACTTTGAATT+TGG | + | chr5.2:81344379-81344398 | MS.gene81256:intron | 20.0% |
| !!! | AATGCTAAATTTTTTGTTGA+TGG | + | chr5.2:81344963-81344982 | MS.gene81256:intron | 20.0% |
| !!! | ACTTTTCAATAAATAATACC+TGG | - | chr5.2:81344159-81344178 | None:intergenic | 20.0% |
| !!! | TTTTCTTCAACAAAATAGAA+GGG | - | chr5.2:81345263-81345282 | None:intergenic | 20.0% |
| !!! | TTTTTAAGTGTCGATTTTTT+AGG | - | chr5.2:81344428-81344447 | None:intergenic | 20.0% |
| ! | AGAAAAGAAACATGAAAATG+TGG | + | chr5.2:81345277-81345296 | MS.gene81256:intron | 25.0% |
| ! | ATTAACATGTTAGGTAAGAA+AGG | + | chr5.2:81344613-81344632 | MS.gene81256:intron | 25.0% |
| ! | ATTGTTTCAATGAACTTTCA+GGG | + | chr5.2:81344861-81344880 | MS.gene81256:intron | 25.0% |
| ! | GATCTTCTATTGATACAATT+GGG | - | chr5.2:81344081-81344100 | None:intergenic | 25.0% |
| ! | TATTGTTTCAATGAACTTTC+AGG | + | chr5.2:81344860-81344879 | MS.gene81256:intron | 25.0% |
| ! | TGCAGAATCATTCAAATTAA+GGG | - | chr5.2:81344743-81344762 | None:intergenic | 25.0% |
| ! | TTAACATGTTAGGTAAGAAA+GGG | + | chr5.2:81344614-81344633 | MS.gene81256:intron | 25.0% |
| !! | ATCTATTTGTTAGCTTACAT+TGG | + | chr5.2:81344658-81344677 | MS.gene81256:intron | 25.0% |
| !! | CTTTTCTTCAACAAAATAGA+AGG | - | chr5.2:81345264-81345283 | None:intergenic | 25.0% |
| !! | TCTATTTGTTAGCTTACATT+GGG | + | chr5.2:81344659-81344678 | MS.gene81256:intron | 25.0% |
| !!! | GAATAAAAAGCATCAATCTT+TGG | - | chr5.2:81344501-81344520 | None:intergenic | 25.0% |
| AATAGAAGATCCATTTGACA+AGG | + | chr5.2:81344090-81344109 | MS.gene81256:CDS | 30.0% | |
| ATATCTCATAACCTCCAAAA+CGG | - | chr5.2:81344538-81344557 | None:intergenic | 30.0% | |
| CCTCAACTTAATTATGAAAC+AGG | - | chr5.2:81345002-81345021 | None:intergenic | 30.0% | |
| CTATTGCAGAGACAAAAAAA+TGG | - | chr5.2:81344326-81344345 | None:intergenic | 30.0% | |
| CTGCAGAATCATTCAAATTA+AGG | - | chr5.2:81344744-81344763 | None:intergenic | 30.0% | |
| GAAAAAAAATGCAAACACAG+TGG | - | chr5.2:81345188-81345207 | None:intergenic | 30.0% | |
| GGATCTTCTATTGATACAAT+TGG | - | chr5.2:81344082-81344101 | None:intergenic | 30.0% | |
| TAACATGTTAGGTAAGAAAG+GGG | + | chr5.2:81344615-81344634 | MS.gene81256:intron | 30.0% | |
| TGATGACACATTAACATGTT+AGG | + | chr5.2:81344604-81344623 | MS.gene81256:intron | 30.0% | |
| TTCCTCTCTATTTATCTAGA+GGG | + | chr5.2:81345205-81345224 | MS.gene81256:intron | 30.0% | |
| TTGTAATGCTCTTCTTCTTA+AGG | + | chr5.2:81344829-81344848 | MS.gene81256:CDS | 30.0% | |
| TTGTCTCTGCAATAGTTAAA+GGG | + | chr5.2:81344331-81344350 | MS.gene81256:intron | 30.0% | |
| TTTCCTCTCTATTTATCTAG+AGG | + | chr5.2:81345204-81345223 | MS.gene81256:intron | 30.0% | |
| TTTGTCTCTGCAATAGTTAA+AGG | + | chr5.2:81344330-81344349 | MS.gene81256:intron | 30.0% | |
| ! | CCTGTTTCATAATTAAGTTG+AGG | + | chr5.2:81344999-81345018 | MS.gene81256:intron | 30.0% |
| ! | CTTAATTTGAATGATTCTGC+AGG | + | chr5.2:81344742-81344761 | MS.gene81256:intron | 30.0% |
| ! | GTTAAGCAGCTATAATTTGT+TGG | + | chr5.2:81344467-81344486 | MS.gene81256:intron | 30.0% |
| !! | CATAATTAAGTTGAGGCATT+GGG | + | chr5.2:81345006-81345025 | MS.gene81256:intron | 30.0% |
| !! | TCATAATTAAGTTGAGGCAT+TGG | + | chr5.2:81345005-81345024 | MS.gene81256:intron | 30.0% |
| AATGGCGAAATGAAATGTCA+AGG | - | chr5.2:81344308-81344327 | None:intergenic | 35.0% | |
| ACAGGTTATTAGTGTAGCAA+TGG | + | chr5.2:81344579-81344598 | MS.gene81256:intron | 35.0% | |
| ACCTGGAAAGACTCTTAAAA+AGG | - | chr5.2:81344215-81344234 | None:intergenic | 35.0% | |
| ATAAGAATGTGAAAGAGACC+TGG | - | chr5.2:81345518-81345537 | None:intergenic | 35.0% | |
| ATAATACCTGGCAAATTCCA+AGG | - | chr5.2:81344147-81344166 | None:intergenic | 35.0% | |
| ATCAAGTATATCTCAAGCCT+TGG | + | chr5.2:81344127-81344146 | MS.gene81256:CDS | 35.0% | |
| ATCCATTTGACAAGGAAGAT+TGG | + | chr5.2:81344098-81344117 | MS.gene81256:CDS | 35.0% | |
| ATGGCGAAATGAAATGTCAA+GGG | - | chr5.2:81344307-81344326 | None:intergenic | 35.0% | |
| GCATTAGTAAGGTTGCTTAT+TGG | + | chr5.2:81344686-81344705 | MS.gene81256:intron | 35.0% | |
| GCGATTAGAAAAATACAACC+AGG | + | chr5.2:81345497-81345516 | MS.gene81256:CDS | 35.0% | |
| TCCATTTGACAAGGAAGATT+GGG | + | chr5.2:81344099-81344118 | MS.gene81256:CDS | 35.0% | |
| ! | AGGTTTTTGTATGCTAACGA+CGG | + | chr5.2:81344231-81344250 | MS.gene81256:intron | 35.0% |
| ! | GTATCTTCAAACTCTGGAAA+AGG | + | chr5.2:81345028-81345047 | MS.gene81256:intron | 35.0% |
| ! | TCTCTCAGTTTGTTTAAGCT+TGG | + | chr5.2:81344916-81344935 | MS.gene81256:intron | 35.0% |
| ! | TGTAGTAAGCATTACCGTTT+TGG | + | chr5.2:81344521-81344540 | MS.gene81256:intron | 35.0% |
| ! | TTCATAGCTGATTTATCCGT+TGG | + | chr5.2:81345429-81345448 | MS.gene81256:CDS | 35.0% |
| !! | TCCTTTTTAAGAGTCTTTCC+AGG | + | chr5.2:81344211-81344230 | MS.gene81256:intron | 35.0% |
| AATGATTCTGCAGGTAGTAG+GGG | + | chr5.2:81344751-81344770 | MS.gene81256:intron | 40.0% | |
| CAGTGGCAAAACTAAAGTAC+TGG | - | chr5.2:81345171-81345190 | None:intergenic | 40.0% | |
| CATTGGGTATCTTCAAACTC+TGG | + | chr5.2:81345022-81345041 | MS.gene81256:intron | 40.0% | |
| CTTTAATCTGACCAACAGCA+AGG | - | chr5.2:81345455-81345474 | None:intergenic | 40.0% | |
| GAATGATTCTGCAGGTAGTA+GGG | + | chr5.2:81344750-81344769 | MS.gene81256:intron | 40.0% | |
| GTCGTTAGCATACAAAAACC+TGG | - | chr5.2:81344232-81344251 | None:intergenic | 40.0% | |
| TCCCAATCTTCCTTGTCAAA+TGG | - | chr5.2:81344103-81344122 | None:intergenic | 40.0% | |
| TGAATGATTCTGCAGGTAGT+AGG | + | chr5.2:81344749-81344768 | MS.gene81256:intron | 40.0% | |
| TGCCCTCTAGATAAATAGAG+AGG | - | chr5.2:81345210-81345229 | None:intergenic | 40.0% | |
| TTTGACCACTTCAATGACCT+CGG | - | chr5.2:81345346-81345365 | None:intergenic | 40.0% | |
| ! | AGTAAGCATTACCGTTTTGG+AGG | + | chr5.2:81344524-81344543 | MS.gene81256:intron | 40.0% |
| ! | ATAGAAGGGAAGTACATGAG+AGG | - | chr5.2:81345249-81345268 | None:intergenic | 40.0% |
| ! | CTCAGTTTGTTTAAGCTTGG+AGG | + | chr5.2:81344919-81344938 | MS.gene81256:intron | 40.0% |
| ! | GTTATTTCCCATTGTGATCC+AGG | + | chr5.2:81345299-81345318 | MS.gene81256:intron | 40.0% |
| !! | CATTGGGTTGAGCATTAGTA+AGG | + | chr5.2:81344675-81344694 | MS.gene81256:intron | 40.0% |
| !! | GCAGCTATAATTTGTTGGCT+AGG | + | chr5.2:81344472-81344491 | MS.gene81256:intron | 40.0% |
| GCTGTTGGTCAGATTAAAGC+AGG | + | chr5.2:81345456-81345475 | MS.gene81256:CDS | 45.0% | |
| GGTCATTGAAGTGGTCAAAC+AGG | + | chr5.2:81345347-81345366 | MS.gene81256:CDS | 45.0% | |
| TGAAGTGGTCAAACAGGCAA+AGG | + | chr5.2:81345353-81345372 | MS.gene81256:CDS | 45.0% | |
| TGGTTGACCTGGATCACAAT+GGG | - | chr5.2:81345309-81345328 | None:intergenic | 45.0% | |
| TTGGTTGACCTGGATCACAA+TGG | - | chr5.2:81345310-81345329 | None:intergenic | 45.0% | |
| CAGTTCCAACTTGGTTGACC+TGG | - | chr5.2:81345320-81345339 | None:intergenic | 50.0% | |
| CTCAAGCCTTGGAATTTGCC+AGG | + | chr5.2:81344138-81344157 | MS.gene81256:CDS | 50.0% | |
| GTGATCCAGGTCAACCAAGT+TGG | + | chr5.2:81345312-81345331 | MS.gene81256:intron | 50.0% | |
| GTGGTGACATCTCACAGAAG+TGG | + | chr5.2:81345390-81345409 | MS.gene81256:CDS | 50.0% | |
| TCTAATCGCTCTCCTCTGCA+AGG | - | chr5.2:81345486-81345505 | None:intergenic | 50.0% | |
| TGTGACCGAGGTCATTGAAG+TGG | + | chr5.2:81345338-81345357 | MS.gene81256:CDS | 50.0% | |
| ! | AACAGGCAAAGGAAGCGCAT+TGG | + | chr5.2:81345364-81345383 | MS.gene81256:CDS | 50.0% |
| ! | ACAGGCAAAGGAAGCGCATT+GGG | + | chr5.2:81345365-81345384 | MS.gene81256:CDS | 50.0% |
| ! | GAAGGGAAGTACATGAGAGG+AGG | - | chr5.2:81345246-81345265 | None:intergenic | 50.0% |
| !! | TTATCCGTTGGCCTTGCTGT+TGG | + | chr5.2:81345441-81345460 | MS.gene81256:CDS | 50.0% |
| CCTCGGTCACAGTTCCAACT+TGG | - | chr5.2:81345329-81345348 | None:intergenic | 55.0% | |
| CTGACCAACAGCAAGGCCAA+CGG | - | chr5.2:81345448-81345467 | None:intergenic | 55.0% | |
| ! | AGGCAAAGGAAGCGCATTGG+GGG | + | chr5.2:81345367-81345386 | MS.gene81256:CDS | 55.0% |
| ! | CAGGCAAAGGAAGCGCATTG+GGG | + | chr5.2:81345366-81345385 | MS.gene81256:CDS | 55.0% |
| ! | CCAAGTTGGAACTGTGACCG+AGG | + | chr5.2:81345326-81345345 | MS.gene81256:CDS | 55.0% |
| AAAGCAGGCGCTCCTTGCAG+AGG | + | chr5.2:81345471-81345490 | MS.gene81256:CDS | 60.0% | |
| ! | AAAGGAAGCGCATTGGGGGG+TGG | + | chr5.2:81345371-81345390 | MS.gene81256:CDS | 60.0% |
| ! | GGCAAAGGAAGCGCATTGGG+GGG | + | chr5.2:81345368-81345387 | MS.gene81256:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 81344074 | 81345542 | 81344074 | ID=MS.gene81256 |
| chr5.2 | mRNA | 81344074 | 81345542 | 81344074 | ID=MS.gene81256.t1;Parent=MS.gene81256 |
| chr5.2 | exon | 81344074 | 81344159 | 81344074 | ID=MS.gene81256.t1.exon1;Parent=MS.gene81256.t1 |
| chr5.2 | CDS | 81344074 | 81344159 | 81344074 | ID=cds.MS.gene81256.t1;Parent=MS.gene81256.t1 |
| chr5.2 | exon | 81344764 | 81344850 | 81344764 | ID=MS.gene81256.t1.exon2;Parent=MS.gene81256.t1 |
| chr5.2 | CDS | 81344764 | 81344850 | 81344764 | ID=cds.MS.gene81256.t1;Parent=MS.gene81256.t1 |
| chr5.2 | exon | 81345321 | 81345542 | 81345321 | ID=MS.gene81256.t1.exon3;Parent=MS.gene81256.t1 |
| chr5.2 | CDS | 81345321 | 81345542 | 81345321 | ID=cds.MS.gene81256.t1;Parent=MS.gene81256.t1 |
| Gene Sequence |
| Protein sequence |
