AlfalfaGEDB | MsG0280010896.01

M. sativa cultivar ZhongmuNo.1 / MsG0280010896.01

KEGG: -
GO: GO:0004553 GO:0005975 GO:0030246
PFAM: PF01301 PF02140

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010896.01.T01	XP_039686761.1	81.686	688	58	5	17	703	184	804	0	1117
MsG0280010896.01.T02	XP_039686761.1	81.686	688	58	5	17	703	184	804	0	1117

Showing 1 to 2 of 2 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010896.01.T01	Q10NX8	54.323	694	235	11	17	697	234	858	0	723
MsG0280010896.01.T02	Q10NX8	54.323	694	235	11	17	697	234	858	0	723

Showing 1 to 2 of 2 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010896.01.T01	G7IRQ0	81.541	688	59	5	17	703	223	843	0.0	1114
MsG0280010896.01.T02	G7IRQ0	81.541	688	59	5	17	703	223	843	0.0	1114

Showing 1 to 2 of 2 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047944.01	MsG0280010896.01	0.802265	6.090068e-49	2.970107e-46
MsG0080047957.01	MsG0280010896.01	0.813094	3.045113e-51	1.969952e-48
MsG0180000091.01	MsG0280010896.01	0.804856	1.767089e-49	9.210609e-47
MsG0180000470.01	MsG0280010896.01	0.812089	5.051215e-51	3.181556e-48
MsG0180000777.01	MsG0280010896.01	0.829555	4.821184e-55	4.950965e-52
MsG0180000814.01	MsG0280010896.01	0.826554	2.545199e-54	2.394754e-51
MsG0180003189.01	MsG0280010896.01	0.800817	1.206063e-48	5.669915e-46
MsG0180003673.01	MsG0280010896.01	0.822353	2.478648e-53	2.069699e-50
MsG0180003686.01	MsG0280010896.01	0.810441	1.150755e-50	6.937042e-48
MsG0180004465.01	MsG0280010896.01	0.813789	2.142184e-51	1.412315e-48

Showing 1 to 10 of 90 entries

Previous1 2 3 4 5…9Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010896.01.T01	MTR_2g094020	81.541	688	59	5	17	703	223	843	0.0	1114
MsG0280010896.01.T01	MTR_2g094060	77.859	682	79	6	17	697	223	833	0.0	1034
MsG0280010896.01.T01	MTR_2g094060	79.426	627	80	5	17	642	223	801	0.0	978
MsG0280010896.01.T01	MTR_4g059680	65.147	680	169	5	17	696	227	838	0.0	873
MsG0280010896.01.T01	MTR_2g094060	76.953	512	69	5	17	527	223	686	0.0	759
MsG0280010896.01.T01	MTR_5g021190	44.635	699	282	19	17	697	227	838	2.87e-179	533
MsG0280010896.01.T01	MTR_8g016230	42.486	692	306	14	17	696	226	837	1.58e-173	518
MsG0280010896.01.T01	MTR_2g100110	42.280	693	306	14	17	696	229	840	1.45e-168	505
MsG0280010896.01.T01	MTR_3g096900	45.724	573	245	12	17	571	228	752	4.20e-152	461
MsG0280010896.01.T01	MTR_2g039120	44.123	553	244	10	17	560	229	725	3.69e-148	449

Showing 1 to 10 of 80 entries

Previous1 2 3 4 5…8Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010896.01.T01	AT2G28470	57.681	690	213	8	17	697	227	846	0.0	761
MsG0280010896.01.T01	AT2G28470	57.681	690	213	8	17	697	227	846	0.0	761
MsG0280010896.01.T01	AT2G28470	63.406	552	167	6	155	697	327	852	0.0	689
MsG0280010896.01.T01	AT2G28470	84.615	65	10	0	17	81	233	297	8.51e-31	129
MsG0280010896.01.T01	AT2G28470	63.406	552	167	6	155	697	327	852	0.0	689
MsG0280010896.01.T01	AT2G28470	84.615	65	10	0	17	81	233	297	8.51e-31	129
MsG0280010896.01.T01	AT2G28470	66.755	379	117	3	155	527	327	702	8.20e-172	509
MsG0280010896.01.T01	AT2G28470	84.615	65	10	0	17	81	233	297	6.27e-31	129
MsG0280010896.01.T01	AT3G13750	42.446	695	304	15	17	697	235	847	3.40e-167	502
MsG0280010896.01.T01	AT4G36360	40.709	705	302	18	17	697	234	846	1.58e-162	490

Showing 1 to 10 of 90 entries

Previous1 2 3 4 5…9Next

Find 22 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACAACTTCTTGATCCAATGC+AGG	0.595751	2:-76495900	None:intergenic
ACATTTGGAGACCCTTGTAG+AGG	0.618423	2:+76495944	MsG0280010896.01.T01:CDS
ATACAATTCTAATTTAGATA+AGG	0.478949	2:-76496080	None:intergenic
ATATGAGTTGAAGATAATCG+AGG	0.629193	2:-76496043	None:intergenic
ATCATTATATTGTGACCATT+TGG	0.374410	2:+76496183	MsG0280010896.01.T01:three_prime_UTR
CAACATGTTACATGTCTGTA+TGG	0.459118	2:-76496009	None:intergenic
CACATTGAGATTTAAGAAAA+TGG	0.207391	2:+76496262	MsG0280010896.01.T02:three_prime_UTR
CATACAGACATGTAACATGT+TGG	0.641036	2:+76496010	MsG0280010896.01.T01:exon
CATTTGGACAAGTGCAATTT+AGG	0.194458	2:+76496199	MsG0280010896.01.T02:three_prime_UTR
CTAAATTAGAATTGTATTCT+AGG	0.165122	2:+76496086	MsG0280010896.01.T01:three_prime_UTR

Showing 1 to 10 of 22 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAACACCCTGTTTATAGAT+AGG	-	Chr2:76493438-76493457	None:intergenic	30.0%
AAGTACAGAATCATCTATCA+GGG	-	Chr2:76493757-76493776	None:intergenic	30.0%
ACATACCATACTCATCAATT+GGG	-	Chr2:76492624-76492643	None:intergenic	30.0%
ATCTTGTAAGTTTCTTTCTC+TGG	+	Chr2:76493036-76493055	MsG0280010896.01.T01:intron	30.0%
ATGAAGATTAATACCTGCAA+TGG	+	Chr2:76492131-76492150	MsG0280010896.01.T01:CDS	30.0%
ATTACCTTGTACCAAATCAA+TGG	-	Chr2:76494624-76494643	None:intergenic	30.0%
CTAAAACAAAGCCAAAAATG+TGG	+	Chr2:76492183-76492202	MsG0280010896.01.T01:CDS	30.0%
CTTCAAACCTTTCAATATCA+CGG	-	Chr2:76494392-76494411	None:intergenic	30.0%
GAAATTAACATGCTGTATTC+AGG	-	Chr2:76496360-76496379	None:intergenic	30.0%
GAGATTACCTGATTATGATT+AGG	-	Chr2:76495280-76495299	None:intergenic	30.0%

Showing 1 to 10 of 289 entries

Previous1 2 3 4 5…29Next

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	76492089	76496381	76492089	ID=MsG0280010896.01;Name=MsG0280010896.01
Chr2	mRNA	76492089	76496212	76492089	ID=MsG0280010896.01.T01;Parent=MsG0280010896.01;Name=MsG0280010896.01.T01;_AED=0.49;_eAED=0.54;_QI=0\|0.76\|0.64\|1\|0.69\|0.57\|14\|161\|703
Chr2	exon	76495899	76496109	76495899	ID=MsG0280010896.01.T01:exon:11778;Parent=MsG0280010896.01.T01
Chr2	exon	76496137	76496212	76496137	ID=MsG0280010896.01.T01:exon:11779;Parent=MsG0280010896.01.T01
Chr2	CDS	76492089	76492225	76492089	ID=MsG0280010896.01.T01:cds;Parent=MsG0280010896.01.T01
Chr2	CDS	76492318	76492440	76492318	ID=MsG0280010896.01.T01:cds;Parent=MsG0280010896.01.T01
Chr2	CDS	76492550	76492703	76492550	ID=MsG0280010896.01.T01:cds;Parent=MsG0280010896.01.T01
Chr2	CDS	76492770	76492937	76492770	ID=MsG0280010896.01.T01:cds;Parent=MsG0280010896.01.T01
Chr2	CDS	76493153	76493314	76493153	ID=MsG0280010896.01.T01:cds;Parent=MsG0280010896.01.T01
Chr2	CDS	76493519	76493721	76493519	ID=MsG0280010896.01.T01:cds;Parent=MsG0280010896.01.T01
Chr2	CDS	76493809	76493903	76493809	ID=MsG0280010896.01.T01:cds;Parent=MsG0280010896.01.T01
Chr2	CDS	76494125	76494234	76494125	ID=MsG0280010896.01.T01:cds;Parent=MsG0280010896.01.T01
Chr2	CDS	76494343	76494456	76494343	ID=MsG0280010896.01.T01:cds;Parent=MsG0280010896.01.T01
Chr2	CDS	76494537	76494638	76494537	ID=MsG0280010896.01.T01:cds;Parent=MsG0280010896.01.T01
Chr2	CDS	76494759	76494970	76494759	ID=MsG0280010896.01.T01:cds;Parent=MsG0280010896.01.T01
Chr2	CDS	76495063	76495468	76495063	ID=MsG0280010896.01.T01:cds;Parent=MsG0280010896.01.T01
Chr2	CDS	76495899	76496024	76495899	ID=MsG0280010896.01.T01:cds;Parent=MsG0280010896.01.T01
Chr2	three_prime_UTR	76496025	76496109	76496025	ID=MsG0280010896.01.T01:three_prime_utr;Parent=MsG0280010896.01.T01
Chr2	three_prime_UTR	76496137	76496212	76496137	ID=MsG0280010896.01.T01:three_prime_utr;Parent=MsG0280010896.01.T01
Chr2	mRNA	76492089	76496381	76492089	ID=MsG0280010896.01.T02;Parent=MsG0280010896.01;Name=MsG0280010896.01.T02;_AED=0.48;_eAED=0.53;_QI=0\|0.75\|0.61\|1\|0.75\|0.69\|13\|357\|703
Chr2	exon	76495899	76496381	76495899	ID=MsG0280010896.01.T02:exon:11780;Parent=MsG0280010896.01.T02
Chr2	CDS	76492089	76492225	76492089	ID=MsG0280010896.01.T02:cds;Parent=MsG0280010896.01.T02
Chr2	CDS	76492318	76492440	76492318	ID=MsG0280010896.01.T02:cds;Parent=MsG0280010896.01.T02
Chr2	CDS	76492550	76492703	76492550	ID=MsG0280010896.01.T02:cds;Parent=MsG0280010896.01.T02
Chr2	CDS	76492770	76492937	76492770	ID=MsG0280010896.01.T02:cds;Parent=MsG0280010896.01.T02
Chr2	CDS	76493153	76493314	76493153	ID=MsG0280010896.01.T02:cds;Parent=MsG0280010896.01.T02
Chr2	CDS	76493519	76493721	76493519	ID=MsG0280010896.01.T02:cds;Parent=MsG0280010896.01.T02
Chr2	CDS	76493809	76493903	76493809	ID=MsG0280010896.01.T02:cds;Parent=MsG0280010896.01.T02
Chr2	CDS	76494125	76494234	76494125	ID=MsG0280010896.01.T02:cds;Parent=MsG0280010896.01.T02
Chr2	CDS	76494343	76494456	76494343	ID=MsG0280010896.01.T02:cds;Parent=MsG0280010896.01.T02
Chr2	CDS	76494537	76494638	76494537	ID=MsG0280010896.01.T02:cds;Parent=MsG0280010896.01.T02
Chr2	CDS	76494759	76494970	76494759	ID=MsG0280010896.01.T02:cds;Parent=MsG0280010896.01.T02
Chr2	CDS	76495063	76495468	76495063	ID=MsG0280010896.01.T02:cds;Parent=MsG0280010896.01.T02
Chr2	CDS	76495899	76496024	76495899	ID=MsG0280010896.01.T02:cds;Parent=MsG0280010896.01.T02
Chr2	three_prime_UTR	76496025	76496381	76496025	ID=MsG0280010896.01.T02:three_prime_utr;Parent=MsG0280010896.01.T02

Gene Sequence

>MsG0280010896.01.T01

ATGCTGTCTGCATTCATCTTACTTGATTTTTACTTGAACTGCATGAAGATTAATACCTGCAATGGATTTTACTGCGATCAATTCACACCAAACTCTAAAACAAAGCCAAAAATGTGGACTGAAAATTGGAGTGCATGGTATCTTTTATTTGGTGGTGGATTTCCTCACAGACCTGTGGAAGATCTCGCATTTGCTGTCGCACGCTTTTTCCAACGAGGCGGTACATTTCAAAATTACTATATGGTATTGCAACCTGAAACTACCATGGAGGAACCAACTTTGACCGAAGTACTGGCGGACCATTCATTGCTACAAGTTATGATTTTGATGCCCCAATTGATGAGTATGGTATGTCCTTCAACCTTCATACTGAAATCTATTGTTCATGTTGTAGCCGTCACAAATGCAACACTGAAATTACGGACAATTTTGTACTTTTTAATTTCTTTGCTATATGCTGCAGGAATTATTAGGCAGCCGAAGTGGAGTCATCTTAAAGATTTGCACAAGGCCATAAAGCTTTGTGAAGAAGCATTAATAGCTACAGAACCCAAGATTACTTCTCTTGGTCCAAACCTAGAGGCGGCAATTTATAAGACAGGATCTGTATGTGCTGCCTTTCTCGCCAACGTGGACACTAAATCTGATAAAACTGTAAATTTCAGAGGCAATTCATATCACTTGCCTGCATGGTCTGTGAGCATCTTACCAGATTGCAAGAATGTAGTGCTTAATACTGCAAAGATTAATTCTGCATCTGTGATTTCAAACTTCGTAACTGAATCTTCAAAAGAAGATATCAGTTCTTTAGAAACTTCAAGTTCAAAATGGAGTTGGATAAAAGAACCTGTGGGTATTTCGAAGGATGATATATTTTCAAAAACTGGATTACTTGAGCAAATAAATATCACCGCTGATAGAAGTGACTACTTGTGGTACTCATTAAGCGTTGATCTTAAGGATGATCCTGGTTCTCAAACTTTCCTTCACATTGAATCGCTCGGCCATGCCCTTCATGCCTTCGTAAACGGCAAGCTTGCAGGGAGTCAAACCGGGAACAAAGACAAACCTAAGCTTAATGTGGACATCCCAATCACAGTAATTTCTGGAAAGAATAAAATTGATCTGCTGAGTTTAACAGTTGGACTTCAGAACTATGGAGCTTTTTTTGACACATGGGGAGCGGGGATCACCGGTCCCGTGATATTGAAAGGTTTGAAGAATGGCAACACTCTTGATCTCTCCTCTCAGAAGTGGACATACCAGATTGGCCTAAAAGGTGAAGATTTAGGTCTCTCTAGTGGAAGTTCCGGAGCGTGGAATTCACAGACTACTTTCCCTAAGAACCAACCATTGATTTGGTACAAGACAAACTTTGATGCTCCATCCGGCAGTAATCCAGTTGCGATTGACTTCACGGGGATGGGAAAAGGTGAGGCTTGGGTAAATGGACAAAGCATTGGGCGATACTGGCCTACATATGTTGCTTCAGATGCTGATTGCACAGACTCATGCAACTACAAGGGACCTTTTACTCAAACCAAATGTCACATGAATTGTGGAAAACCATCACAGACATTATACCATGTACCACGATCGTTTTTGAAACCAAACGGCAACACTCTTGTATTGTTTGAGGAAAGTGGTGGTGATCCAACGCAAATAGCTTTTGCTACAAAACAGCTAGAAAGTTTGTGTGCACATGTATCTGATTCACACCCACCTCAAATAGACTTGTGGAACCAAGATACAGAATCAAGGGAAAAAGTAGGGCCTGCACTGTTCCTCAAGTGTCCTAATCATAATCAGGTAATCTCTTCCATTAAATTTGCAAGCTATGGAACACCATTAGGGACATGCGGAAACTTCTACCACGGACGCTGCAGAAGCAATAAGGCGATGTCAATTGTAAAGAAGGTGTTTATCTGGATTCCTGTTCCCTTGCTAATTTGTTTTGTTTCACTTTGGTTTAGATTACTATGTTGGGCCTGCATTGGATCAAGAAGTTGTAGTGTTGGAGTATCAACTGATACATTTGGAGACCCTTGTAGAGGAGTGCCAAAGAGTTTAGCTGTTGAAGCTACTTGTGCTTATAGCCATACAGACATGTAA

>MsG0280010896.01.T02

Protein sequence

>MsG0280010896.01.T01

MLSAFILLDFYLNCMKINTCNGFYCDQFTPNSKTKPKMWTENWSAWYLLFGGGFPHRPVEDLAFAVARFFQRGGTFQNYYMVLQPETTMEEPTLTEVLADHSLLQVMILMPQLMSMVCPSTFILKSIVHVVAVTNATLKLRTILYFLISLLYAAGIIRQPKWSHLKDLHKAIKLCEEALIATEPKITSLGPNLEAAIYKTGSVCAAFLANVDTKSDKTVNFRGNSYHLPAWSVSILPDCKNVVLNTAKINSASVISNFVTESSKEDISSLETSSSKWSWIKEPVGISKDDIFSKTGLLEQINITADRSDYLWYSLSVDLKDDPGSQTFLHIESLGHALHAFVNGKLAGSQTGNKDKPKLNVDIPITVISGKNKIDLLSLTVGLQNYGAFFDTWGAGITGPVILKGLKNGNTLDLSSQKWTYQIGLKGEDLGLSSGSSGAWNSQTTFPKNQPLIWYKTNFDAPSGSNPVAIDFTGMGKGEAWVNGQSIGRYWPTYVASDADCTDSCNYKGPFTQTKCHMNCGKPSQTLYHVPRSFLKPNGNTLVLFEESGGDPTQIAFATKQLESLCAHVSDSHPPQIDLWNQDTESREKVGPALFLKCPNHNQVISSIKFASYGTPLGTCGNFYHGRCRSNKAMSIVKKVFIWIPVPLLICFVSLWFRLLCWACIGSRSCSVGVSTDTFGDPCRGVPKSLAVEATCAYSHTDM*

>MsG0280010896.01.T02