AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006825.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006825.01.T01 MTR_2g015790 93.919 148 5 2 1 148 1 144 1.54e-77 226
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006825.01.T01 AT1G29070 61.321 106 34 3 44 148 56 155 2.36e-29 105

Find 32 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAAATGCAGACAAGTTTA+AGG 0.163360 2:-6794442 None:intergenic
TTCCACTCTTCTACCATTTC+AGG 0.167216 2:+6791943 MsG0280006825.01.T01:CDS
AAGCAATGGAGAACGAAATT+TGG 0.248963 2:-6791875 None:intergenic
AAATGCAAGATTAGACTTGA+TGG 0.349270 2:+6794572 MsG0280006825.01.T01:three_prime_UTR
TCCAGGTTTGTCACTGGGAT+TGG 0.354922 2:+6794145 MsG0280006825.01.T01:intron
CCATGTCCAGGTTTGTCACT+GGG 0.366798 2:+6794140 MsG0280006825.01.T01:intron
TGTCTTCTAGGTCCAACATT+AGG 0.373666 2:-6794176 None:intergenic
TCCATGTCCAGGTTTGTCAC+TGG 0.393144 2:+6794139 MsG0280006825.01.T01:intron
GCCACTATTTGCGTGGCTCT+TGG 0.405290 2:-6794372 None:intergenic
GAGTGGAAAGAGAGAGAAGA+AGG 0.436096 2:-6791928 None:intergenic
AAACGAATGAGCACAACAAC+TGG 0.446755 2:+6794299 MsG0280006825.01.T01:CDS
GAACTGAGAGAGATTGAAGA+TGG 0.451682 2:-6791850 None:intergenic
GTTGGACCTAGAAGACAAAA+TGG 0.465141 2:+6794182 MsG0280006825.01.T01:CDS
TAGAAGACAAAATGGTCGTC+TGG 0.490410 2:+6794190 MsG0280006825.01.T01:CDS
AGTGGGTGCTCTGAATTTCA+TGG 0.501238 2:-6791809 None:intergenic
ACCAAGAGCCACGCAAATAG+TGG 0.502785 2:+6794371 MsG0280006825.01.T01:CDS
GAAAGAGAGAGAAGAAGGAG+AGG 0.509500 2:-6791923 None:intergenic
AAGTAGATCACGAAAATCAT+TGG 0.511560 2:+6794256 MsG0280006825.01.T01:CDS
AGAGGAAAGAGAAGAAGTGA+AGG 0.513017 2:-6791905 None:intergenic
TTGCGTGGCTCTTGGTGCAA+AGG 0.521900 2:-6794364 None:intergenic
TTGTTGTGCTCATTCGTTTG+CGG 0.530347 2:-6794295 None:intergenic
AAATCATTGGCACGCACTCA+TGG 0.536974 2:+6794269 MsG0280006825.01.T01:CDS
GTGAAGGAGCAATGAAGCAA+TGG 0.546159 2:-6791889 None:intergenic
CAATGGAGAACGAAATTTGG+AGG 0.554985 2:-6791872 None:intergenic
CTGAATTTCATGGATATCAA+AGG 0.555430 2:-6791799 None:intergenic
CGTCTGGTTATAGTAGCAGC+AGG 0.557576 2:+6794206 MsG0280006825.01.T01:CDS
TTGGACTTGAAACCTAATGT+TGG 0.565813 2:+6794164 MsG0280006825.01.T01:CDS
ATTAAAGCGACGACGCGCCA+AGG 0.568139 2:+6794331 MsG0280006825.01.T01:CDS
TACCTGAAATGGTAGAAGAG+TGG 0.590029 2:-6791945 None:intergenic
ACTATTTGCCACTATTTGCG+TGG 0.627313 2:-6794379 None:intergenic
TTAAAGCGACGACGCGCCAA+GGG 0.641870 2:+6794332 MsG0280006825.01.T01:CDS
TTTGAAGAAGCAGTGAAAGT+GGG 0.659697 2:-6791826 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTGAGAAAATAAAAAATT+TGG - Chr2:6793897-6793916 None:intergenic 10.0%
!!! AAAAAAAAATGTTTTATTGT+TGG + Chr2:6792303-6792322 MsG0280006825.01.T01:intron 10.0%
!!! AAAAAAAATGTTTTATTGTT+GGG + Chr2:6792304-6792323 MsG0280006825.01.T01:intron 10.0%
!!! AGTAGAAAAATTATTTTAAT+TGG + Chr2:6793356-6793375 MsG0280006825.01.T01:intron 10.0%
!!! ATGTTTTTCTAAAATAAATT+AGG - Chr2:6793120-6793139 None:intergenic 10.0%
!!! TACTTTTCTTTTTTAAATTA+CGG - Chr2:6793153-6793172 None:intergenic 10.0%
!!! TTTAAAACTTGTATTATTTT+AGG + Chr2:6794517-6794536 MsG0280006825.01.T01:three_prime_UTR 10.0%
!! AAAAAAACAAGAAATTAAGT+TGG - Chr2:6791984-6792003 None:intergenic 15.0%
!! ATATAGTTAAAAAATTTGTC+CGG + Chr2:6794086-6794105 MsG0280006825.01.T01:intron 15.0%
!! GAAAACTAAAATAAACATAA+GGG + Chr2:6792894-6792913 MsG0280006825.01.T01:intron 15.0%
!! GAAAACTAAAATAAACATAA+GGG - Chr2:6792913-6792894 None:intergenic 15.0%
!! TGAAAACTAAAATAAACATA+AGG + Chr2:6792893-6792912 MsG0280006825.01.T01:intron 15.0%
!! TGAAAACTAAAATAAACATA+AGG - Chr2:6792912-6792893 None:intergenic 15.0%
!!! AATACAAGTTTTAAACATAA+AGG - Chr2:6794512-6794531 None:intergenic 15.0%
!!! ACATGTTTTATTTTTGTTAT+TGG + Chr2:6792243-6792262 MsG0280006825.01.T01:intron 15.0%
!!! CACTTTTCATTTTTAAATTA+CGG + Chr2:6792567-6792586 MsG0280006825.01.T01:intron 15.0%
!!! GTTTATTTTAGTTTTCAAAT+TGG - Chr2:6793072-6793091 None:intergenic 15.0%
!!! TACACAAATATAATACTTTT+AGG - Chr2:6794415-6794434 None:intergenic 15.0%
!!! TTATTTTCTCAAATTATGAT+CGG + Chr2:6793903-6793922 MsG0280006825.01.T01:intron 15.0%
!! AAAACATTTCAATCTTATAG+AGG - Chr2:6793752-6793771 None:intergenic 20.0%
!! AACAATAAGAAAATAACCTA+AGG - Chr2:6793211-6793230 None:intergenic 20.0%
!! ACAAAAATAAAACATGTTTG+AGG - Chr2:6792240-6792259 None:intergenic 20.0%
!! ACAATAAGAAAATAACCTAA+GGG - Chr2:6793210-6793229 None:intergenic 20.0%
!! GAAAACTAAAATAAACGTAT+GGG + Chr2:6793016-6793035 MsG0280006825.01.T01:intron 20.0%
!! TGAAAACTAAAATAAACGTA+TGG + Chr2:6793015-6793034 MsG0280006825.01.T01:intron 20.0%
!! TTAAACATAATCTGATACTT+AGG - Chr2:6792172-6792191 None:intergenic 20.0%
!! TTCAATCACACTTAATTTAT+TGG + Chr2:6792650-6792669 MsG0280006825.01.T01:intron 20.0%
!!! CATTTAGTTACATTCTTTTA+GGG + Chr2:6792490-6792509 MsG0280006825.01.T01:intron 20.0%
!!! GTTTATTTTAGTTTTCAAGT+CGG + Chr2:6792698-6792717 MsG0280006825.01.T01:intron 20.0%
!!! GTTTATTTTAGTTTTCAAGT+TGG + Chr2:6792698-6792717 MsG0280006825.01.T01:intron 20.0%
!!! GTTTATTTTAGTTTTCAAGT+TGG - Chr2:6792717-6792698 None:intergenic 20.0%
!!! TCATTTAGTTACATTCTTTT+AGG + Chr2:6792489-6792508 MsG0280006825.01.T01:intron 20.0%
!!! TCTTCTTATTTTCATAACAA+TGG + Chr2:6794475-6794494 MsG0280006825.01.T01:three_prime_UTR 20.0%
!!! TGAAAACTTTTAAAACGTAA+GGG - Chr2:6792754-6792773 None:intergenic 20.0%
!!! TTATTTTTGTTATTGGTTGT+TGG + Chr2:6792250-6792269 MsG0280006825.01.T01:intron 20.0%
!!! TTGAAAACTTTTAAAACGTA+AGG - Chr2:6792755-6792774 None:intergenic 20.0%
!!! TTTTAATTCTAACCAACATA+AGG + Chr2:6792081-6792100 MsG0280006825.01.T01:intron 20.0%
!!! TTTTTTGTGTGATTGAAATT+TGG + Chr2:6792002-6792021 MsG0280006825.01.T01:intron 20.0%
! AAAACTGAATTGAAACATAC+CGG - Chr2:6793322-6793341 None:intergenic 25.0%
! AACTCAAAAAAAGAGGATAA+TGG + Chr2:6791750-6791769 MsG0280006825.01.T01:exon 25.0%
! CTTGAAACTTTCAAAACATA+AGG + Chr2:6793044-6793063 MsG0280006825.01.T01:intron 25.0%
! TCATTGTCAAGTTATTTACA+TGG - Chr2:6793792-6793811 None:intergenic 25.0%
! TTGAAACTTTCAAAACGTAA+GGG + Chr2:6792985-6793004 MsG0280006825.01.T01:intron 25.0%
! TTGAAACTTTCAAAACGTAA+GGG - Chr2:6793004-6792985 None:intergenic 25.0%
!! ATAGCGGTTGAATTTTTAAT+TGG + Chr2:6792040-6792059 MsG0280006825.01.T01:intron 25.0%
!! GTTTAAGCTTTAGTTAATAG+CGG + Chr2:6792024-6792043 MsG0280006825.01.T01:intron 25.0%
!! TTGTAGTTCTTTTGCAATAA+TGG + Chr2:6794016-6794035 MsG0280006825.01.T01:intron 25.0%
!! TTTCAATCTTATAGAGGTAT+TGG - Chr2:6793746-6793765 None:intergenic 25.0%
!!! ACAAGAAATTAAGTTGGAAA+AGG - Chr2:6791978-6791997 None:intergenic 25.0%
!!! ACATTATCATCATTGATTCT+AGG + Chr2:6793471-6793490 MsG0280006825.01.T01:intron 25.0%
!!! ATGTTTTGAAAGTTTCAAGT+TGG - Chr2:6793043-6793062 None:intergenic 25.0%
!!! ATTAAGTTGGAAAAGGAAAA+AGG - Chr2:6791971-6791990 None:intergenic 25.0%
!!! CAAACTAGTTCTATTCAATT+CGG - Chr2:6793290-6793309 None:intergenic 25.0%
!!! CGTTTTAAAAGTTTTCAAGT+TGG + Chr2:6792757-6792776 MsG0280006825.01.T01:intron 25.0%
AAATCAAGTCAAGCTAAATC+CGG - Chr2:6794108-6794127 None:intergenic 30.0%
AAATGCAAGATTAGACTTGA+TGG + Chr2:6794572-6794591 MsG0280006825.01.T01:three_prime_UTR 30.0%
AAGTAGATCACGAAAATCAT+TGG + Chr2:6794256-6794275 MsG0280006825.01.T01:CDS 30.0%
AGTTATTTACATGGAATCCT+TGG - Chr2:6793783-6793802 None:intergenic 30.0%
ATTAGGCTTAATTGCATGTT+TGG - Chr2:6793103-6793122 None:intergenic 30.0%
CTGAATTTCATGGATATCAA+AGG - Chr2:6791802-6791821 None:intergenic 30.0%
CTTGAAACTTTCAAAACGTA+AGG + Chr2:6792984-6793003 MsG0280006825.01.T01:intron 30.0%
CTTGAAACTTTCAAAACGTA+AGG - Chr2:6793003-6792984 None:intergenic 30.0%
GACTTCAATGATCTTTACAA+AGG - Chr2:6793709-6793728 None:intergenic 30.0%
GTAGCAAAACTCAAAAAAAG+AGG + Chr2:6791743-6791762 MsG0280006825.01.T01:five_prime_UTR 30.0%
TGTAACTAAATGAACAGCAT+AGG - Chr2:6792482-6792501 None:intergenic 30.0%
TTATGCTTCTGCATTTGTAA+TGG + Chr2:6792407-6792426 MsG0280006825.01.T01:intron 30.0%
TTGAAATGCAGACAAGTTTA+AGG - Chr2:6794445-6794464 None:intergenic 30.0%
! AACTAGTTTGAATGTAGTAC+CGG + Chr2:6793300-6793319 MsG0280006825.01.T01:intron 30.0%
! ACTTCATGTCAAAGTTTGTT+TGG + Chr2:6793841-6793860 MsG0280006825.01.T01:intron 30.0%
! CTGCATTTGTAATGGAAAAT+GGG + Chr2:6792415-6792434 MsG0280006825.01.T01:intron 30.0%
! TCTGCATTTGTAATGGAAAA+TGG + Chr2:6792414-6792433 MsG0280006825.01.T01:intron 30.0%
! TGCATTTGTAATGGAAAATG+GGG + Chr2:6792416-6792435 MsG0280006825.01.T01:intron 30.0%
! TGGAATGAAGGTTTCATTTT+TGG + Chr2:6792356-6792375 MsG0280006825.01.T01:intron 30.0%
! TGTTGATATTGCTTTAGCTT+TGG + Chr2:6793434-6793453 MsG0280006825.01.T01:intron 30.0%
! TTGTTGGTTAGTTATGCAAT+TGG + Chr2:6792266-6792285 MsG0280006825.01.T01:intron 30.0%
!! TATTGGCTTAATTGCATGTT+TGG + Chr2:6792667-6792686 MsG0280006825.01.T01:intron 30.0%
!!! AAATGTTTTTTCAACTGCCA+AGG + Chr2:6793763-6793782 MsG0280006825.01.T01:intron 30.0%
!!! ACGTTTTGAAAGTTTCAAGT+TGG + Chr2:6792727-6792746 MsG0280006825.01.T01:intron 30.0%
!!! ATTTTTTTTTTGCAGCACAC+TGG - Chr2:6794556-6794575 None:intergenic 30.0%
!!! CGTTTATTTTTGTGTTGGTT+TGG + Chr2:6793495-6793514 MsG0280006825.01.T01:intron 30.0%
!!! TAGGACGTTTATTTTTGTGT+TGG + Chr2:6793490-6793509 MsG0280006825.01.T01:intron 30.0%
AAGCAATGGAGAACGAAATT+TGG - Chr2:6791878-6791897 None:intergenic 35.0%
AAGTGTCAGTACTGCAAAAA+TGG - Chr2:6793825-6793844 None:intergenic 35.0%
ATGCTTTGCTTGCAATTGTT+TGG + Chr2:6794041-6794060 MsG0280006825.01.T01:intron 35.0%
CTAACCAACATAAGGTTAGT+GGG + Chr2:6792089-6792108 MsG0280006825.01.T01:intron 35.0%
GCGACTTAAAGTAAGGAATT+TGG + Chr2:6793616-6793635 MsG0280006825.01.T01:intron 35.0%
GGTTTGATTGAACTTGACTA+TGG + Chr2:6792325-6792344 MsG0280006825.01.T01:intron 35.0%
TCTAACCAACATAAGGTTAG+TGG + Chr2:6792088-6792107 MsG0280006825.01.T01:intron 35.0%
TTGATTGAACTTGACTATGG+TGG + Chr2:6792328-6792347 MsG0280006825.01.T01:intron 35.0%
TTGGACTTGAAACCTAATGT+TGG + Chr2:6794164-6794183 MsG0280006825.01.T01:CDS 35.0%
TTTGAAGAAGCAGTGAAAGT+GGG - Chr2:6791829-6791848 None:intergenic 35.0%
! AAATAACCTAAGGGTGTGTT+TGG - Chr2:6793201-6793220 None:intergenic 35.0%
! GCTTTGTTGGAAATTGTATG+CGG + Chr2:6793971-6793990 MsG0280006825.01.T01:intron 35.0%
! TGAGTTTTGCTACGTGTTTT+CGG - Chr2:6791736-6791755 None:intergenic 35.0%
! TTTTCGTGATCTACTTCTCT+TGG - Chr2:6794252-6794271 None:intergenic 35.0%
!! AAATTATGATCGGTGTCAAC+GGG + Chr2:6793913-6793932 MsG0280006825.01.T01:intron 35.0%
!! AAGGAAAAAGGTACCTGAAA+TGG - Chr2:6791959-6791978 None:intergenic 35.0%
!! CAAATTATGATCGGTGTCAA+CGG + Chr2:6793912-6793931 MsG0280006825.01.T01:intron 35.0%
!! TGATATTGCTTTAGCTTTGG+TGG + Chr2:6793437-6793456 MsG0280006825.01.T01:intron 35.0%
!! TTTTGAAGAAGCAGTGAAAG+TGG - Chr2:6791830-6791849 None:intergenic 35.0%
!!! ACATTCTTTTAGGGTGTGTT+TGG + Chr2:6792499-6792518 MsG0280006825.01.T01:intron 35.0%
!!! ACGTTTATTTTTGTGTTGGC+TGG + Chr2:6793542-6793561 MsG0280006825.01.T01:intron 35.0%
AAACGAATGAGCACAACAAC+TGG + Chr2:6794299-6794318 MsG0280006825.01.T01:CDS 40.0%
AAATGGGGTTGTGTTGTAAG+TGG + Chr2:6792431-6792450 MsG0280006825.01.T01:intron 40.0%
ACTATTTGCCACTATTTGCG+TGG - Chr2:6794382-6794401 None:intergenic 40.0%
AGAGGAAAGAGAAGAAGTGA+AGG - Chr2:6791908-6791927 None:intergenic 40.0%
CAAACCCACTAACCTTATGT+TGG - Chr2:6792096-6792115 None:intergenic 40.0%
CAAGTCGGTCCAAAACATAA+GGG + Chr2:6792863-6792882 MsG0280006825.01.T01:intron 40.0%
CAATGGAGAACGAAATTTGG+AGG - Chr2:6791875-6791894 None:intergenic 40.0%
GAACTGAGAGAGATTGAAGA+TGG - Chr2:6791853-6791872 None:intergenic 40.0%
GTTGGACCTAGAAGACAAAA+TGG + Chr2:6794182-6794201 MsG0280006825.01.T01:CDS 40.0%
TACCTGAAATGGTAGAAGAG+TGG - Chr2:6791948-6791967 None:intergenic 40.0%
TAGAAGACAAAATGGTCGTC+TGG + Chr2:6794190-6794209 MsG0280006825.01.T01:CDS 40.0%
TCAAGTCGGTCCAAAACATA+AGG + Chr2:6792862-6792881 MsG0280006825.01.T01:intron 40.0%
TCTCATCGCGACTTAAAGTA+AGG + Chr2:6793609-6793628 MsG0280006825.01.T01:intron 40.0%
TGTCTTCTAGGTCCAACATT+AGG - Chr2:6794179-6794198 None:intergenic 40.0%
TGTGTTTGGATTGAGGGTTT+AGG + Chr2:6792513-6792532 MsG0280006825.01.T01:intron 40.0%
TGTGTTTGGATTGAGGGTTT+AGG - Chr2:6792532-6792513 None:intergenic 40.0%
TTAGGGTGTGTTTGGATTGA+GGG + Chr2:6792507-6792526 MsG0280006825.01.T01:intron 40.0%
TTCCACTCTTCTACCATTTC+AGG + Chr2:6791943-6791962 MsG0280006825.01.T01:CDS 40.0%
TTGTTGTGCTCATTCGTTTG+CGG - Chr2:6794298-6794317 None:intergenic 40.0%
TTTGGATTGAGGGTTTAGGA+GGG + Chr2:6792517-6792536 MsG0280006825.01.T01:intron 40.0%
TTTGGATTGAGGGTTTAGGA+GGG - Chr2:6792536-6792517 None:intergenic 40.0%
! AAACTGATTTCTCCATGTCC+AGG + Chr2:6794128-6794147 MsG0280006825.01.T01:intron 40.0%
! AGACGACCATTTTGTCTTCT+AGG - Chr2:6794191-6794210 None:intergenic 40.0%
! GAAGTATTTCCATCTGACAC+AGG - Chr2:6793678-6793697 None:intergenic 40.0%
! TAAGGGTGTGTTTGGATTGA+GGG - Chr2:6793193-6793212 None:intergenic 40.0%
! TTTAGGGTGTGTTTGGATTG+AGG + Chr2:6792506-6792525 MsG0280006825.01.T01:intron 40.0%
!! TTTCCAACAAAGCACTGACA+CGG - Chr2:6793964-6793983 None:intergenic 40.0%
!!! CAAGTTGGTCCCTTATGTTT+TGG - Chr2:6792820-6792801 None:intergenic 40.0%
AAATCATTGGCACGCACTCA+TGG + Chr2:6794269-6794288 MsG0280006825.01.T01:CDS 45.0%
ACTTGACTATGGTGGCTGTT+TGG + Chr2:6792336-6792355 MsG0280006825.01.T01:intron 45.0%
CTCAATCCAAACACACCCTT+AGG + Chr2:6793192-6793211 MsG0280006825.01.T01:intron 45.0%
GAAAGAGAGAGAAGAAGGAG+AGG - Chr2:6791926-6791945 None:intergenic 45.0%
GAGTGGAAAGAGAGAGAAGA+AGG - Chr2:6791931-6791950 None:intergenic 45.0%
GTGAAGGAGCAATGAAGCAA+TGG - Chr2:6791892-6791911 None:intergenic 45.0%
GTTTGGATTGAGGGTTTAGG+AGG + Chr2:6792516-6792535 MsG0280006825.01.T01:intron 45.0%
GTTTGGATTGAGGGTTTAGG+AGG - Chr2:6792535-6792516 None:intergenic 45.0%
TCGTCGCTCTACTTTCTCTA+AGG + Chr2:6793390-6793409 MsG0280006825.01.T01:intron 45.0%
TTGGATTGAGGGTTTAGGAG+GGG + Chr2:6792518-6792537 MsG0280006825.01.T01:intron 45.0%
TTGGATTGAGGGTTTAGGAG+GGG - Chr2:6792537-6792518 None:intergenic 45.0%
! AGTGGGTGCTCTGAATTTCA+TGG - Chr2:6791812-6791831 None:intergenic 45.0%
! ATGGTGGCTGTTTGGAATGA+AGG + Chr2:6792344-6792363 MsG0280006825.01.T01:intron 45.0%
! CTAAGGGTGTGTTTGGATTG+AGG - Chr2:6793194-6793213 None:intergenic 45.0%
! TGCTGTTTACCTGTGTCAGA+TGG + Chr2:6793666-6793685 MsG0280006825.01.T01:intron 45.0%
!!! ATAAAACATTTTTTTTTTTT+TGG - Chr2:6792300-6792319 None:intergenic 5.0%
ACCAAGAGCCACGCAAATAG+TGG + Chr2:6794371-6794390 MsG0280006825.01.T01:CDS 50.0%
ATTGAGGGTTTAGGAGGGGA+GGG + Chr2:6792522-6792541 MsG0280006825.01.T01:intron 50.0%
ATTGAGGGTTTAGGAGGGGA+GGG - Chr2:6792541-6792522 None:intergenic 50.0%
CCATGTCCAGGTTTGTCACT+GGG + Chr2:6794140-6794159 MsG0280006825.01.T01:intron 50.0%
CGATGAGAGCAAGATGAGCA+TGG - Chr2:6793597-6793616 None:intergenic 50.0%
CGTCTGGTTATAGTAGCAGC+AGG + Chr2:6794206-6794225 MsG0280006825.01.T01:CDS 50.0%
TCCAATCCCAGTGACAAACC+TGG - Chr2:6794149-6794168 None:intergenic 50.0%
TCCAGGTTTGTCACTGGGAT+TGG + Chr2:6794145-6794164 MsG0280006825.01.T01:intron 50.0%
TCCATGTCCAGGTTTGTCAC+TGG + Chr2:6794139-6794158 MsG0280006825.01.T01:intron 50.0%
TGTCCGTGTCAGTGCTTTGT+TGG + Chr2:6793958-6793977 MsG0280006825.01.T01:intron 50.0%
! GCAAAGGACTTTTCGTCCCT+TGG - Chr2:6794351-6794370 None:intergenic 50.0%
ATTAAAGCGACGACGCGCCA+AGG + Chr2:6794331-6794350 MsG0280006825.01.T01:CDS 55.0%
CAACGGGTCAGTGTCGTGTA+TGG + Chr2:6793929-6793948 MsG0280006825.01.T01:intron 55.0%
CCCAGTGACAAACCTGGACA+TGG - Chr2:6794143-6794162 None:intergenic 55.0%
GATTGAGGGTTTAGGAGGGG+AGG + Chr2:6792521-6792540 MsG0280006825.01.T01:intron 55.0%
GATTGAGGGTTTAGGAGGGG+AGG - Chr2:6792540-6792521 None:intergenic 55.0%
GCCACTATTTGCGTGGCTCT+TGG - Chr2:6794375-6794394 None:intergenic 55.0%
TTAAAGCGACGACGCGCCAA+GGG + Chr2:6794332-6794351 MsG0280006825.01.T01:CDS 55.0%
TTGAGGGTTTAGGAGGGGAG+GGG + Chr2:6792523-6792542 MsG0280006825.01.T01:intron 55.0%
! TTGCGTGGCTCTTGGTGCAA+AGG - Chr2:6794367-6794386 None:intergenic 55.0%
AGGGTTTAGGAGGGGAGGGG+AGG + Chr2:6792526-6792545 MsG0280006825.01.T01:intron 65.0%
GGGTTTAGGAGGGGAGGGGA+GGG + Chr2:6792527-6792546 MsG0280006825.01.T01:intron 65.0%
GGTTTAGGAGGGGAGGGGAG+GGG + Chr2:6792528-6792547 MsG0280006825.01.T01:intron 65.0%
AGGAGGGGAGGGGAGGGGAA+GGG + Chr2:6792533-6792552 MsG0280006825.01.T01:intron 70.0%
TAGGAGGGGAGGGGAGGGGA+AGG + Chr2:6792532-6792551 MsG0280006825.01.T01:intron 70.0%
AGGGGAGGGGAAGGGAGGGG+AGG + Chr2:6792541-6792560 MsG0280006825.01.T01:intron 75.0%
AGGGGAGGGGAGGGGAAGGG+AGG + Chr2:6792536-6792555 MsG0280006825.01.T01:intron 75.0%
GGGAGGGGAGGGGAAGGGAG+GGG + Chr2:6792538-6792557 MsG0280006825.01.T01:intron 75.0%
GGGGAGGGGAGGGGAAGGGA+GGG + Chr2:6792537-6792556 MsG0280006825.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr2 gene 6791723 6794639 6791723 ID=MsG0280006825.01;Name=MsG0280006825.01
Chr2 mRNA 6791723 6794639 6791723 ID=MsG0280006825.01.T01;Parent=MsG0280006825.01;Name=MsG0280006825.01.T01;_AED=0.41;_eAED=0.41;_QI=46|1|1|1|0|0|2|239|148
Chr2 exon 6791723 6791964 6791723 ID=MsG0280006825.01.T01:exon:2837;Parent=MsG0280006825.01.T01
Chr2 exon 6794150 6794639 6794150 ID=MsG0280006825.01.T01:exon:2838;Parent=MsG0280006825.01.T01
Chr2 five_prime_UTR 6791723 6791768 6791723 ID=MsG0280006825.01.T01:five_prime_utr;Parent=MsG0280006825.01.T01
Chr2 CDS 6791769 6791964 6791769 ID=MsG0280006825.01.T01:cds;Parent=MsG0280006825.01.T01
Chr2 CDS 6794150 6794400 6794150 ID=MsG0280006825.01.T01:cds;Parent=MsG0280006825.01.T01
Chr2 three_prime_UTR 6794401 6794639 6794401 ID=MsG0280006825.01.T01:three_prime_utr;Parent=MsG0280006825.01.T01
Gene Sequence

>MsG0280006825.01.T01

ATGGCTTCGTTATCATCTTCTTCTGTGTCTCCTTTGATATCCATGAAATTCAGAGCACCCACTTTCACTGCTTCTTCAAAACCATCTTCAATCTCTCTCAGTTCCTCCAAATTTCGTTCTCCATTGCTTCATTGCTCCTTCACTTCTTCTCTTTCCTCTCCTTCTTCTCTCTCTTTCCACTCTTCTACCATTTCAGGTTTGTCACTGGGATTGGACTTGAAACCTAATGTTGGACCTAGAAGACAAAATGGTCGTCTGGTTATAGTAGCAGCAGGCAGACAAGCTCTTTGTCTAACCAAGAGAAGTAGATCACGAAAATCATTGGCACGCACTCATGGCTTCCGCAAACGAATGAGCACAACAACTGGAAGAGCTGTATTAAAGCGACGACGCGCCAAGGGACGAAAAGTCCTTTGCACCAAGAGCCACGCAAATAGTGGCAAATAG

Protein sequence

>MsG0280006825.01.T01

MASLSSSSVSPLISMKFRAPTFTASSKPSSISLSSSKFRSPLLHCSFTSSLSSPSSLSFHSSTISGLSLGLDLKPNVGPRRQNGRLVIVAAGRQALCLTKRSRSRKSLARTHGFRKRMSTTTGRAVLKRRRAKGRKVLCTKSHANSGK*