AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005612.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005612.01.T01 MTR_1g103810 89.756 205 15 1 1 199 1 205 5.69e-132 369
MsG0180005612.01.T01 MTR_1g103810 88.750 160 12 1 1 154 1 160 3.04e-99 285
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005612.01.T01 AT1G05385 69.231 143 41 1 57 199 6 145 1.83e-64 196
MsG0180005612.01.T01 AT1G05385 69.231 143 41 1 57 199 60 199 4.08e-64 197

Find 93 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATGAACCAAAACTTATT+TGG 0.141055 1:-93973153 None:intergenic
AAATAGTGGTTTCAACATTT+TGG 0.171253 1:-93972911 None:intergenic
TCCCATGCTATCTGATTCTT+TGG 0.185657 1:-93972940 None:intergenic
GAAAATGATGATGGGGTTAT+TGG 0.198844 1:+93972381 MsG0180005612.01.T01:CDS
GATCCATGATATACTAATTC+TGG 0.212831 1:-93973297 None:intergenic
CCCTGACTTTGTCTTCTCAT+TGG 0.218549 1:-93972427 None:intergenic
GGTTAATACATTTATAATAA+AGG 0.242846 1:-93973194 None:intergenic
CCCATGCTATCTGATTCTTT+GGG 0.264272 1:-93972939 None:intergenic
ATCTGCAGTCCGTCTAAATT+TGG 0.273557 1:-93972538 None:intergenic
TTACAGTTTATCACCATTAA+TGG 0.273988 1:+93972326 MsG0180005612.01.T01:CDS
TCTTCGGCCCATGCCATTAA+TGG 0.281488 1:-93972339 None:intergenic
CCTGACTTTGTCTTCTCATT+GGG 0.285272 1:-93972426 None:intergenic
GAAATATATTTACCTAGTTT+TGG 0.304398 1:+93973027 MsG0180005612.01.T01:three_prime_UTR
CTAAATTTGGCATTGTCATC+AGG 0.305219 1:-93972525 None:intergenic
GTTAATACATTTATAATAAA+GGG 0.313470 1:-93973193 None:intergenic
AAAATGATGATGGGGTTATT+GGG 0.321409 1:+93972382 MsG0180005612.01.T01:CDS
ACCATGTTCCAAATAAGTTT+TGG 0.328063 1:+93973145 MsG0180005612.01.T01:three_prime_UTR
TTCTACAGTCCTCTCTGTCT+TGG 0.330880 1:-93973091 None:intergenic
TTCTTTGGGGTTTGAAATAG+TGG 0.335423 1:-93972925 None:intergenic
TTAACCCTAAGTTATATAAT+AGG 0.348572 1:+93973211 MsG0180005612.01.T01:three_prime_UTR
TAGTTGCTTGCATATAATAT+CGG 0.349183 1:+93973246 MsG0180005612.01.T01:three_prime_UTR
ACCAGCTTAACCTGTTCCTT+TGG 0.359914 1:+93971119 MsG0180005612.01.T01:five_prime_UTR
TCTACAGTCCTCTCTGTCTT+GGG 0.362912 1:-93973090 None:intergenic
GGTAAAAGCAGTAAGATCTT+TGG 0.364747 1:+93972783 MsG0180005612.01.T01:CDS
AATTAGCGTTGCCACTTCAT+TGG 0.375737 1:+93972287 MsG0180005612.01.T01:CDS
TGTGAATGTAGTCAACATTC+TGG 0.376130 1:+93971367 MsG0180005612.01.T01:five_prime_UTR
CCCAATGAGAAGACAAAGTC+AGG 0.396652 1:+93972426 MsG0180005612.01.T01:CDS
TGCAGCAAAGGAGTCGATTC+GGG 0.402932 1:+93972560 MsG0180005612.01.T01:CDS
ATCACAAGATTTGACATTGA+AGG 0.411870 1:+93971443 MsG0180005612.01.T01:CDS
AATAAAGGGTGATGAGAAGT+TGG 0.413928 1:-93973179 None:intergenic
AAATTCCTATTATATAACTT+AGG 0.424490 1:-93973216 None:intergenic
ATTACCACCTTGTGTGTGAT+TGG 0.426739 1:-93971049 None:intergenic
GACTTAACTTCCGTCGGCAG+TGG 0.431839 1:-93972838 None:intergenic
ATGCAGCAAAGGAGTCGATT+CGG 0.434911 1:+93972559 MsG0180005612.01.T01:CDS
AATTCCTATTATATAACTTA+GGG 0.439036 1:-93973215 None:intergenic
GAGAACCTTACCTGTGCAAA+TGG 0.441168 1:-93971164 None:intergenic
GGAACACATAATAGCTGAAA+AGG 0.441979 1:-93971420 None:intergenic
TTTGTCAGCTGACTTCTCTT+CGG 0.445390 1:-93972355 None:intergenic
TTCGGGAGTATCTTGGTAGT+TGG 0.447521 1:+93972577 MsG0180005612.01.T01:CDS
AATTGAAAGGTTTCTGCGAC+TGG 0.455585 1:-93972268 None:intergenic
GCTGACTTTAAGTAAGCCTT+CGG 0.465034 1:-93972459 None:intergenic
TATCCAGAATTAGTATATCA+TGG 0.477536 1:+93973294 MsG0180005612.01.T01:three_prime_UTR
TCCAAAGGAACAGGTTAAGC+TGG 0.480719 1:-93971120 None:intergenic
AAACACTTATCCAAAGGAAC+AGG 0.487514 1:-93971129 None:intergenic
GCAGGAATCATACTTTGCTC+TGG 0.488174 1:+93972762 MsG0180005612.01.T01:intron
GGAAATTTCGTAAAAGAGAA+TGG 0.492580 1:+93971391 MsG0180005612.01.T01:exon
ACTTAACTTCCGTCGGCAGT+GGG 0.492647 1:-93972837 None:intergenic
GACAAAGAGGAAAATGATGA+TGG 0.495002 1:+93972372 MsG0180005612.01.T01:CDS
GACAAATAAATAACAGCCCA+TGG 0.495324 1:-93973349 None:intergenic
ATACTTCTTGAGAAACAGTC+TGG 0.498665 1:-93972608 None:intergenic
TCCGTCGGCAGTGGGGCTGA+TGG 0.499406 1:-93972829 None:intergenic
TAACAGATAAACTGCAATCC+AGG 0.501310 1:+93972214 MsG0180005612.01.T01:intron
CCCCAAAGAATCAGATAGCA+TGG 0.504637 1:+93972938 MsG0180005612.01.T01:three_prime_UTR
GGGAGTATCTTGGTAGTTGG+AGG 0.505346 1:+93972580 MsG0180005612.01.T01:CDS
GTTTATACTATATTTACCCA+TGG 0.513414 1:+93973332 MsG0180005612.01.T01:three_prime_UTR
CCATGCTATCTGATTCTTTG+GGG 0.513797 1:-93972938 None:intergenic
GGGATCAAATAACGATTTGA+CGG 0.517749 1:-93972406 None:intergenic
TCGGAGCCTTCCATTTGCAC+AGG 0.519668 1:+93971154 MsG0180005612.01.T01:five_prime_UTR
GAGTCGATTCGGGAGTATCT+TGG 0.529772 1:+93972570 MsG0180005612.01.T01:CDS
GTTTATCACCATTAATGGCA+TGG 0.531611 1:+93972331 MsG0180005612.01.T01:CDS
TAAATTTGGCATTGTCATCA+GGG 0.539047 1:-93972524 None:intergenic
TTCAATGTCAAATCTTGTGA+TGG 0.542981 1:-93971441 None:intergenic
GGTAATTATCAACCAAAACT+AGG 0.545076 1:-93973039 None:intergenic
TTTATCACCATTAATGGCAT+GGG 0.553461 1:+93972332 MsG0180005612.01.T01:CDS
GCCATCAGCCCCACTGCCGA+CGG 0.555502 1:+93972828 MsG0180005612.01.T01:CDS
ACCTTACCTGTGCAAATGGA+AGG 0.556743 1:-93971160 None:intergenic
TTACTTAAAGTCAGCAAGAG+AGG 0.560221 1:+93972467 MsG0180005612.01.T01:CDS
TTTATACTATATTTACCCAT+GGG 0.560224 1:+93973333 MsG0180005612.01.T01:three_prime_UTR
AAGTGGCAACGCTAATTGAA+AGG 0.563857 1:-93972281 None:intergenic
AGAGAAGTCAGCTGACAAAG+AGG 0.564571 1:+93972359 MsG0180005612.01.T01:CDS
AAATGATGATGGGGTTATTG+GGG 0.566321 1:+93972383 MsG0180005612.01.T01:CDS
TGTTATTGTAACCAATGAAG+TGG 0.566510 1:-93972298 None:intergenic
TAATTACCCCTCACCTCCAC+CGG 0.568438 1:+93973054 MsG0180005612.01.T01:three_prime_UTR
ATCATGGATCAAAACTCACT+TGG 0.570851 1:+93973310 MsG0180005612.01.T01:three_prime_UTR
ACAAAGAGGAAAATGATGAT+GGG 0.572295 1:+93972373 MsG0180005612.01.T01:CDS
GGAGTATCTTGGTAGTTGGA+GGG 0.581542 1:+93972581 MsG0180005612.01.T01:CDS
ACCAAAACTTATTTGGAACA+TGG 0.587069 1:-93973146 None:intergenic
CTGCGACTGGAAGCTTCGAG+AGG 0.595865 1:-93972255 None:intergenic
ACGGACTGCAGATGCAGCAA+AGG 0.596536 1:+93972548 MsG0180005612.01.T01:CDS
TCATTGGTTACAATAACATG+TGG 0.609111 1:+93972303 MsG0180005612.01.T01:CDS
AAGCTGTGCAGTATTAGACC+TGG 0.611400 1:-93972232 None:intergenic
CCCAAAGAATCAGATAGCAT+GGG 0.613209 1:+93972939 MsG0180005612.01.T01:three_prime_UTR
ATGACAATGCCAAATTTAGA+CGG 0.613681 1:+93972529 MsG0180005612.01.T01:CDS
CAAAGAGGAAAATGATGATG+GGG 0.618349 1:+93972374 MsG0180005612.01.T01:CDS
ACAAATAAATAACAGCCCAT+GGG 0.618952 1:-93973348 None:intergenic
ATTTCAGACTTAACTTCCGT+CGG 0.625733 1:-93972844 None:intergenic
TGCAGAGTCTGTAAAACATG+AGG 0.635500 1:-93973121 None:intergenic
CTTAACTTCCGTCGGCAGTG+GGG 0.642851 1:-93972836 None:intergenic
GAATGTAGTCAACATTCTGG+AGG 0.654559 1:+93971370 MsG0180005612.01.T01:five_prime_UTR
GAGTATCTTGGTAGTTGGAG+GGG 0.662716 1:+93972582 MsG0180005612.01.T01:CDS
CCAATGAGAAGACAAAGTCA+GGG 0.666576 1:+93972427 MsG0180005612.01.T01:CDS
TTTGCAGCCAATCACACACA+AGG 0.682430 1:+93971042 None:intergenic
GCAGCCAATCACACACAAGG+TGG 0.685796 1:+93971045 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTAATACATTTATAATAAA+GGG - Chr1:93973196-93973215 None:intergenic 10.0%
!! AAATATATATAATCATGCTT+TGG + Chr1:93972728-93972747 MsG0180005612.01.T01:intron 15.0%
!! AAATTCCTATTATATAACTT+AGG - Chr1:93973219-93973238 None:intergenic 15.0%
!! AATTCCTATTATATAACTTA+GGG - Chr1:93973218-93973237 None:intergenic 15.0%
!! ATTAAGAAAAATTGTAGTAT+AGG + Chr1:93971089-93971108 MsG0180005612.01.T01:five_prime_UTR 15.0%
!! ATTAATCTATTTATCCAAAT+AGG + Chr1:93971721-93971740 MsG0180005612.01.T01:intron 15.0%
!! GGTTAATACATTTATAATAA+AGG - Chr1:93973197-93973216 None:intergenic 15.0%
!! AAACTGTTATGTATAGTTTA+TGG - Chr1:93971976-93971995 None:intergenic 20.0%
!! AAATTGAAGAAAGGAAATAA+AGG - Chr1:93971206-93971225 None:intergenic 20.0%
!! AGTAATTGAAAATTGAAGAA+AGG - Chr1:93971215-93971234 None:intergenic 20.0%
!! TTAACCCTAAGTTATATAAT+AGG + Chr1:93973211-93973230 MsG0180005612.01.T01:three_prime_UTR 20.0%
!! TTTATACTATATTTACCCAT+GGG + Chr1:93973333-93973352 MsG0180005612.01.T01:three_prime_UTR 20.0%
!!! AAATTGTTTTAAGGTTTGTT+TGG + Chr1:93971843-93971862 MsG0180005612.01.T01:intron 20.0%
!!! GAAATATATTTACCTAGTTT+TGG + Chr1:93973027-93973046 MsG0180005612.01.T01:three_prime_UTR 20.0%
!!! TAAGCTGTTTTTTATATCAA+AGG - Chr1:93972047-93972066 None:intergenic 20.0%
!!! TATTTCAAACATTTTGAGAT+TGG + Chr1:93971477-93971496 MsG0180005612.01.T01:intron 20.0%
!!! TCAAAATGTTTGAAATAGTA+AGG - Chr1:93971474-93971493 None:intergenic 20.0%
! ATATGCACTTATATGATAAG+GGG + Chr1:93972070-93972089 MsG0180005612.01.T01:intron 25.0%
! ATCATGAACCAAAACTTATT+TGG - Chr1:93973156-93973175 None:intergenic 25.0%
! ATTGAATGATACAACCTATT+TGG - Chr1:93971738-93971757 None:intergenic 25.0%
! CATATGCACTTATATGATAA+GGG + Chr1:93972069-93972088 MsG0180005612.01.T01:intron 25.0%
! GTTTATACTATATTTACCCA+TGG + Chr1:93973332-93973351 MsG0180005612.01.T01:three_prime_UTR 25.0%
! TAGTTGCTTGCATATAATAT+CGG + Chr1:93973246-93973265 MsG0180005612.01.T01:three_prime_UTR 25.0%
! TATCCAGAATTAGTATATCA+TGG + Chr1:93973294-93973313 MsG0180005612.01.T01:three_prime_UTR 25.0%
! TTACAGTTTATCACCATTAA+TGG + Chr1:93972326-93972345 MsG0180005612.01.T01:CDS 25.0%
! TTTCTACAAAAATTCTTCAG+CGG - Chr1:93972887-93972906 None:intergenic 25.0%
!! AAATAGTGGTTTCAACATTT+TGG - Chr1:93972914-93972933 None:intergenic 25.0%
!! TAGCATATATGTTAGGATTT+TGG + Chr1:93972675-93972694 MsG0180005612.01.T01:intron 25.0%
!!! CTTGGGTTTTTATTTTTATC+CGG - Chr1:93973076-93973095 None:intergenic 25.0%
!!! TTTTAAGGTTTGTTTGGAAT+TGG + Chr1:93971849-93971868 MsG0180005612.01.T01:intron 25.0%
ACAAAGAGGAAAATGATGAT+GGG + Chr1:93972373-93972392 MsG0180005612.01.T01:CDS 30.0%
ACAAATAAATAACAGCCCAT+GGG - Chr1:93973351-93973370 None:intergenic 30.0%
ATCACAAGATTTGACATTGA+AGG + Chr1:93971443-93971462 MsG0180005612.01.T01:CDS 30.0%
ATGACAATGCCAAATTTAGA+CGG + Chr1:93972529-93972548 MsG0180005612.01.T01:CDS 30.0%
ATGGTAAACTAAGTAAGAGT+AGG + Chr1:93972160-93972179 MsG0180005612.01.T01:intron 30.0%
CATTCACAAAAAGAAAAGAC+TGG - Chr1:93972707-93972726 None:intergenic 30.0%
CTTTGACTAGCATATATGTT+AGG + Chr1:93972668-93972687 MsG0180005612.01.T01:intron 30.0%
GAAAAGCTGTCAATAAATGA+AGG - Chr1:93972187-93972206 None:intergenic 30.0%
GATCCATGATATACTAATTC+TGG - Chr1:93973300-93973319 None:intergenic 30.0%
GCATATGCACTTATATGATA+AGG + Chr1:93972068-93972087 MsG0180005612.01.T01:intron 30.0%
GGAAATTTCGTAAAAGAGAA+TGG + Chr1:93971391-93971410 MsG0180005612.01.T01:exon 30.0%
GGTAATTATCAACCAAAACT+AGG - Chr1:93973042-93973061 None:intergenic 30.0%
GGTTGTATCATTCAATTGAA+AGG + Chr1:93971742-93971761 MsG0180005612.01.T01:intron 30.0%
GTCATACAATACTTACAACA+TGG + Chr1:93972141-93972160 MsG0180005612.01.T01:intron 30.0%
TAAATTTGGCATTGTCATCA+GGG - Chr1:93972527-93972546 None:intergenic 30.0%
TGCTTATTATGAGAGAACTA+TGG + Chr1:93971885-93971904 MsG0180005612.01.T01:intron 30.0%
TGTTATTGTAACCAATGAAG+TGG - Chr1:93972301-93972320 None:intergenic 30.0%
TTCAATGTCAAATCTTGTGA+TGG - Chr1:93971444-93971463 None:intergenic 30.0%
TTTATCACCATTAATGGCAT+GGG + Chr1:93972332-93972351 MsG0180005612.01.T01:CDS 30.0%
! ACCAAAACTTATTTGGAACA+TGG - Chr1:93973149-93973168 None:intergenic 30.0%
! ACCATGTTCCAAATAAGTTT+TGG + Chr1:93973145-93973164 MsG0180005612.01.T01:three_prime_UTR 30.0%
! CATATACGCAATACTCTTTT+GGG - Chr1:93971259-93971278 None:intergenic 30.0%
! GTAAGTATTGTATGACACAA+AGG - Chr1:93972137-93972156 None:intergenic 30.0%
! TCATATACGCAATACTCTTT+TGG - Chr1:93971260-93971279 None:intergenic 30.0%
! TCATTGGTTACAATAACATG+TGG + Chr1:93972303-93972322 MsG0180005612.01.T01:CDS 30.0%
!! AAAATGATGATGGGGTTATT+GGG + Chr1:93972382-93972401 MsG0180005612.01.T01:CDS 30.0%
!! TTGCACTATAGTATTGATAG+TGG + Chr1:93971815-93971834 MsG0180005612.01.T01:intron 30.0%
!!! CCTTTGGATAAGTGTTTTTT+CGG + Chr1:93971135-93971154 MsG0180005612.01.T01:five_prime_UTR 30.0%
!!! TTTTTATTTTTATCCGGTGG+AGG - Chr1:93973070-93973089 None:intergenic 30.0%
AAACACTTATCCAAAGGAAC+AGG - Chr1:93971132-93971151 None:intergenic 35.0%
AATAAAAACCCAAGACAGAG+AGG + Chr1:93973082-93973101 MsG0180005612.01.T01:three_prime_UTR 35.0%
AATAAAGGGTGATGAGAAGT+TGG - Chr1:93973182-93973201 None:intergenic 35.0%
ATACTTCTTGAGAAACAGTC+TGG - Chr1:93972611-93972630 None:intergenic 35.0%
ATCATGGATCAAAACTCACT+TGG + Chr1:93973310-93973329 MsG0180005612.01.T01:three_prime_UTR 35.0%
ATTTCAGACTTAACTTCCGT+CGG - Chr1:93972847-93972866 None:intergenic 35.0%
CCGAAAAAACACTTATCCAA+AGG - Chr1:93971138-93971157 None:intergenic 35.0%
CTAAATTTGGCATTGTCATC+AGG - Chr1:93972528-93972547 None:intergenic 35.0%
GACAAAGAGGAAAATGATGA+TGG + Chr1:93972372-93972391 MsG0180005612.01.T01:CDS 35.0%
GACAAATAAATAACAGCCCA+TGG - Chr1:93973352-93973371 None:intergenic 35.0%
GGAACACATAATAGCTGAAA+AGG - Chr1:93971423-93971442 None:intergenic 35.0%
GGGATCAAATAACGATTTGA+CGG - Chr1:93972409-93972428 None:intergenic 35.0%
GGTAAAAGCAGTAAGATCTT+TGG + Chr1:93972783-93972802 MsG0180005612.01.T01:CDS 35.0%
GTTTATCACCATTAATGGCA+TGG + Chr1:93972331-93972350 MsG0180005612.01.T01:CDS 35.0%
TAACAGATAAACTGCAATCC+AGG + Chr1:93972214-93972233 MsG0180005612.01.T01:intron 35.0%
TGTGAATGTAGTCAACATTC+TGG + Chr1:93971367-93971386 MsG0180005612.01.T01:five_prime_UTR 35.0%
TTACTTAAAGTCAGCAAGAG+AGG + Chr1:93972467-93972486 MsG0180005612.01.T01:CDS 35.0%
! CAAAGAGGAAAATGATGATG+GGG + Chr1:93972374-93972393 MsG0180005612.01.T01:CDS 35.0%
! TTTGGCAAACTTTTACTCAG+AGG + Chr1:93972801-93972820 MsG0180005612.01.T01:CDS 35.0%
!! AAATGATGATGGGGTTATTG+GGG + Chr1:93972383-93972402 MsG0180005612.01.T01:CDS 35.0%
!! GAAAATGATGATGGGGTTAT+TGG + Chr1:93972381-93972400 MsG0180005612.01.T01:CDS 35.0%
!! GTGGCTCGTAAATTGTTTTA+AGG + Chr1:93971834-93971853 MsG0180005612.01.T01:intron 35.0%
!! TTCTTTGGGGTTTGAAATAG+TGG - Chr1:93972928-93972947 None:intergenic 35.0%
!!! GGGTTTTTATTTTTATCCGG+TGG - Chr1:93973073-93973092 None:intergenic 35.0%
AAGTGGCAACGCTAATTGAA+AGG - Chr1:93972284-93972303 None:intergenic 40.0%
AATTGAAAGGTTTCTGCGAC+TGG - Chr1:93972271-93972290 None:intergenic 40.0%
AGCAAAGTATGATTCCTGCA+AGG - Chr1:93972761-93972780 None:intergenic 40.0%
AGGAAATAAAGGCGAGGATA+TGG - Chr1:93971195-93971214 None:intergenic 40.0%
ATCTGCAGTCCGTCTAAATT+TGG - Chr1:93972541-93972560 None:intergenic 40.0%
CCAATGAGAAGACAAAGTCA+GGG + Chr1:93972427-93972446 MsG0180005612.01.T01:CDS 40.0%
CCATGCTATCTGATTCTTTG+GGG - Chr1:93972941-93972960 None:intergenic 40.0%
CCCAAAGAATCAGATAGCAT+GGG + Chr1:93972939-93972958 MsG0180005612.01.T01:three_prime_UTR 40.0%
CCCATGCTATCTGATTCTTT+GGG - Chr1:93972942-93972961 None:intergenic 40.0%
CCTGACTTTGTCTTCTCATT+GGG - Chr1:93972429-93972448 None:intergenic 40.0%
GAAGAAAGGAAATAAAGGCG+AGG - Chr1:93971201-93971220 None:intergenic 40.0%
GAATGTAGTCAACATTCTGG+AGG + Chr1:93971370-93971389 MsG0180005612.01.T01:five_prime_UTR 40.0%
GCAAAGTATGATTCCTGCAA+GGG - Chr1:93972760-93972779 None:intergenic 40.0%
TATGACACAAAGGCTCTGTT+TGG - Chr1:93972127-93972146 None:intergenic 40.0%
TCCCATGCTATCTGATTCTT+TGG - Chr1:93972943-93972962 None:intergenic 40.0%
TGCAGAGTCTGTAAAACATG+AGG - Chr1:93973124-93973143 None:intergenic 40.0%
! AATTAGCGTTGCCACTTCAT+TGG + Chr1:93972287-93972306 MsG0180005612.01.T01:CDS 40.0%
! CAAACTTTTACTCAGAGGCA+GGG + Chr1:93972806-93972825 MsG0180005612.01.T01:CDS 40.0%
! GCTGACTTTAAGTAAGCCTT+CGG - Chr1:93972462-93972481 None:intergenic 40.0%
! TTTGTCAGCTGACTTCTCTT+CGG - Chr1:93972358-93972377 None:intergenic 40.0%
AAGCTGTGCAGTATTAGACC+TGG - Chr1:93972235-93972254 None:intergenic 45.0%
ACCAGCTTAACCTGTTCCTT+TGG + Chr1:93971119-93971138 MsG0180005612.01.T01:five_prime_UTR 45.0%
ACCTTACCTGTGCAAATGGA+AGG - Chr1:93971163-93971182 None:intergenic 45.0%
AGAGAAGTCAGCTGACAAAG+AGG + Chr1:93972359-93972378 MsG0180005612.01.T01:CDS 45.0%
ATGCAGCAAAGGAGTCGATT+CGG + Chr1:93972559-93972578 MsG0180005612.01.T01:CDS 45.0%
CCCAATGAGAAGACAAAGTC+AGG + Chr1:93972426-93972445 MsG0180005612.01.T01:CDS 45.0%
CCCCAAAGAATCAGATAGCA+TGG + Chr1:93972938-93972957 MsG0180005612.01.T01:three_prime_UTR 45.0%
CCCTGACTTTGTCTTCTCAT+TGG - Chr1:93972430-93972449 None:intergenic 45.0%
GAGAACCTTACCTGTGCAAA+TGG - Chr1:93971167-93971186 None:intergenic 45.0%
GCAGGAATCATACTTTGCTC+TGG + Chr1:93972762-93972781 MsG0180005612.01.T01:intron 45.0%
TCCAAAGGAACAGGTTAAGC+TGG - Chr1:93971123-93971142 None:intergenic 45.0%
TCTACAGTCCTCTCTGTCTT+GGG - Chr1:93973093-93973112 None:intergenic 45.0%
TTCTACAGTCCTCTCTGTCT+TGG - Chr1:93973094-93973113 None:intergenic 45.0%
! ATTTTTATCCGGTGGAGGTG+AGG - Chr1:93973065-93973084 None:intergenic 45.0%
! GAGTATCTTGGTAGTTGGAG+GGG + Chr1:93972582-93972601 MsG0180005612.01.T01:CDS 45.0%
! GCAAACTTTTACTCAGAGGC+AGG + Chr1:93972805-93972824 MsG0180005612.01.T01:CDS 45.0%
! GGAGTATCTTGGTAGTTGGA+GGG + Chr1:93972581-93972600 MsG0180005612.01.T01:CDS 45.0%
! TTTTTATCCGGTGGAGGTGA+GGG - Chr1:93973064-93973083 None:intergenic 45.0%
!! TTCGGGAGTATCTTGGTAGT+TGG + Chr1:93972577-93972596 MsG0180005612.01.T01:CDS 45.0%
ACTTAACTTCCGTCGGCAGT+GGG - Chr1:93972840-93972859 None:intergenic 50.0%
GCCTTCCATTTGCACAGGTA+AGG + Chr1:93971159-93971178 MsG0180005612.01.T01:intron 50.0%
TAATTACCCCTCACCTCCAC+CGG + Chr1:93973054-93973073 MsG0180005612.01.T01:three_prime_UTR 50.0%
TCTTCGGCCCATGCCATTAA+TGG - Chr1:93972342-93972361 None:intergenic 50.0%
! GCTTTGGATTGATCCCTTGC+AGG + Chr1:93972744-93972763 MsG0180005612.01.T01:intron 50.0%
! GTCAGGGAAAGTTTTGCCGA+AGG + Chr1:93972443-93972462 MsG0180005612.01.T01:CDS 50.0%
! TGCAGCAAAGGAGTCGATTC+GGG + Chr1:93972560-93972579 MsG0180005612.01.T01:CDS 50.0%
! TTTTATCCGGTGGAGGTGAG+GGG - Chr1:93973063-93973082 None:intergenic 50.0%
!! GAGTCGATTCGGGAGTATCT+TGG + Chr1:93972570-93972589 MsG0180005612.01.T01:CDS 50.0%
!! GGGAGTATCTTGGTAGTTGG+AGG + Chr1:93972580-93972599 MsG0180005612.01.T01:CDS 50.0%
CTTAACTTCCGTCGGCAGTG+GGG - Chr1:93972839-93972858 None:intergenic 55.0%
GACTTAACTTCCGTCGGCAG+TGG - Chr1:93972841-93972860 None:intergenic 55.0%
TCGGAGCCTTCCATTTGCAC+AGG + Chr1:93971154-93971173 MsG0180005612.01.T01:five_prime_UTR 55.0%
! ACGGACTGCAGATGCAGCAA+AGG + Chr1:93972548-93972567 MsG0180005612.01.T01:CDS 55.0%
CTGCGACTGGAAGCTTCGAG+AGG - Chr1:93972258-93972277 None:intergenic 60.0%
GCCATCAGCCCCACTGCCGA+CGG + Chr1:93972828-93972847 MsG0180005612.01.T01:CDS 70.0%
TCCGTCGGCAGTGGGGCTGA+TGG - Chr1:93972832-93972851 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 93971051 93973383 93971051 ID=MsG0180005612.01;Name=MsG0180005612.01
Chr1 mRNA 93971051 93973383 93971051 ID=MsG0180005612.01.T01;Parent=MsG0180005612.01;Name=MsG0180005612.01.T01;_AED=0.49;_eAED=0.49;_QI=193|1|1|1|0.33|0.25|4|480|199
Chr1 exon 93971051 93971175 93971051 ID=MsG0180005612.01.T01:exon:49965;Parent=MsG0180005612.01.T01
Chr1 exon 93971342 93971464 93971342 ID=MsG0180005612.01.T01:exon:49966;Parent=MsG0180005612.01.T01
Chr1 exon 93972220 93972626 93972220 ID=MsG0180005612.01.T01:exon:49967;Parent=MsG0180005612.01.T01
Chr1 exon 93972766 93973383 93972766 ID=MsG0180005612.01.T01:exon:49968;Parent=MsG0180005612.01.T01
Chr1 five_prime_UTR 93971051 93971175 93971051 ID=MsG0180005612.01.T01:five_prime_utr;Parent=MsG0180005612.01.T01
Chr1 five_prime_UTR 93971342 93971409 93971342 ID=MsG0180005612.01.T01:five_prime_utr;Parent=MsG0180005612.01.T01
Chr1 CDS 93971410 93971464 93971410 ID=MsG0180005612.01.T01:cds;Parent=MsG0180005612.01.T01
Chr1 CDS 93972220 93972626 93972220 ID=MsG0180005612.01.T01:cds;Parent=MsG0180005612.01.T01
Chr1 CDS 93972766 93972903 93972766 ID=MsG0180005612.01.T01:cds;Parent=MsG0180005612.01.T01
Chr1 three_prime_UTR 93972904 93973383 93972904 ID=MsG0180005612.01.T01:three_prime_utr;Parent=MsG0180005612.01.T01
Gene Sequence

>MsG0180005612.01.T01

ATGGCAGCTACCTTTTCAGCTATTATGTGTTCCATCACAAGATTTGACATTGAAGATAAACTGCAATCCAGGTCTAATACTGCACAGCTTCCTCTCGAAGCTTCCAGTCGCAGAAACCTTTCAATTAGCGTTGCCACTTCATTGGTTACAATAACATGTGGTTACAGTTTATCACCATTAATGGCATGGGCCGAAGAGAAGTCAGCTGACAAAGAGGAAAATGATGATGGGGTTATTGGGGCCGTCAAATCGTTATTTGATCCCAATGAGAAGACAAAGTCAGGGAAAGTTTTGCCGAAGGCTTACTTAAAGTCAGCAAGAGAGGTAGTGAAGACACTGCGTGAATCTTTAAATGAAGACCCTGATGACAATGCCAAATTTAGACGGACTGCAGATGCAGCAAAGGAGTCGATTCGGGAGTATCTTGGTAGTTGGAGGGGAAACCAGACTGTTTCTCAAGAAGAATCATACTTTGCTCTGGTAAAAGCAGTAAGATCTTTGGCAAACTTTTACTCAGAGGCAGGGCCATCAGCCCCACTGCCGACGGAAGTTAAGTCTGAAATATTAAATTATCTGAATACCGCTGAAGAATTTTTGTAG

Protein sequence

>MsG0180005612.01.T01

MAATFSAIMCSITRFDIEDKLQSRSNTAQLPLEASSRRNLSISVATSLVTITCGYSLSPLMAWAEEKSADKEENDDGVIGAVKSLFDPNEKTKSGKVLPKAYLKSAREVVKTLRESLNEDPDDNAKFRRTADAAKESIREYLGSWRGNQTVSQEESYFALVKAVRSLANFYSEAGPSAPLPTEVKSEILNYLNTAEEFL*