AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780037184.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780037184.01.T01 MTR_7g029325 84.343 198 27 2 1 194 1 198 7.47e-97 280
MsG0780037184.01.T01 MTR_4g104210 49.180 122 47 5 76 191 35 147 2.29e-25 96.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780037184.01.T01 AT3G27160 44.500 200 83 4 1 191 1 181 1.31e-37 129
MsG0780037184.01.T01 AT3G27160 44.221 199 83 4 1 190 1 180 7.86e-37 127
MsG0780037184.01.T01 AT5G63300 39.496 119 62 4 76 191 66 177 6.97e-21 85.9
MsG0780037184.01.T01 AT5G63300 45.205 73 39 1 76 147 66 138 2.48e-15 71.6

Find 50 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCTTCCTTCTTGGGTTT+TGG 0.117696 7:-21422369 None:intergenic
ATCATCATCCTCTTCCTTCT+TGG 0.209987 7:-21422376 None:intergenic
CTGAAGAGAGGTTGCTTAAT+AGG 0.214327 7:+21420578 MsG0780037184.01.T01:CDS
ACAATAACTTGAACATTATA+TGG 0.232267 7:-21420541 None:intergenic
TGAACTTGTTGTTGCGGTTT+TGG 0.277110 7:-21420381 None:intergenic
CTCGATTCTCTGAAATCTTA+TGG 0.307350 7:+21422615 MsG0780037184.01.T01:three_prime_UTR
TCATCATCCTCTTCCTTCTT+GGG 0.320409 7:-21422375 None:intergenic
AGGAAGAGGATGATGATAAC+TGG 0.330861 7:+21422382 MsG0780037184.01.T01:CDS
TTCAAGAGTGTAAGAGAAGA+AGG 0.348339 7:+21420632 MsG0780037184.01.T01:CDS
AAATACAATAATTAAGTCTA+AGG 0.353871 7:-21422533 None:intergenic
AAATTTAGTACATCCTCTTC+AGG 0.383834 7:-21422411 None:intergenic
TTTCAGGCGCCCTATGGGAG+GGG 0.395421 7:+21422302 MsG0780037184.01.T01:intron
CTATTAAGCAACCTCTCTTC+AGG 0.403889 7:-21420577 None:intergenic
GGTTGTTGTGGTGACTTTGT+TGG 0.420698 7:-21420328 None:intergenic
GGTGACTTTGTTGGTGGTGA+AGG 0.427170 7:-21420319 None:intergenic
TTCAGGCGCCCTATGGGAGG+GGG 0.460845 7:+21422303 MsG0780037184.01.T01:intron
TGAAGGGAATGAGAAGAAGT+TGG 0.474759 7:-21420302 None:intergenic
CGTAGAGAGGTTATGAGAGC+TGG 0.485901 7:+21420604 MsG0780037184.01.T01:CDS
CTAAGCGTAATCGTAGGAAC+AGG 0.488387 7:+21420704 MsG0780037184.01.T01:CDS
GTGACTTTGTTGGTGGTGAA+GGG 0.496353 7:-21420318 None:intergenic
TAGTTGTTGTACTGTCCTCT+TGG 0.497512 7:-21422333 None:intergenic
AGAAGAGAGGGTGGTTGTTG+TGG 0.499618 7:-21420340 None:intergenic
TGTTGTGGTGACTTTGTTGG+TGG 0.506368 7:-21420325 None:intergenic
GCAATATCTTGTGGTGGTTG+TGG 0.509431 7:-21420478 None:intergenic
GGATTTAAATTGATGCAAGA+AGG 0.513604 7:-21422654 None:intergenic
GAGAGGCTTTGTCTGCATGT+AGG 0.514216 7:+21422483 MsG0780037184.01.T01:three_prime_UTR
GGGTATGGAGAGAGAAGAGA+GGG 0.514932 7:-21420352 None:intergenic
GATTTAAATTGATGCAAGAA+GGG 0.527196 7:-21422653 None:intergenic
TGGGTATGGAGAGAGAAGAG+AGG 0.533732 7:-21420353 None:intergenic
TATGGAGAGAGAAGAGAGGG+TGG 0.536722 7:-21420349 None:intergenic
GCTTAATAGGTTTCGTAGAG+AGG 0.539971 7:+21420591 MsG0780037184.01.T01:CDS
ATCGTAGGAACAGGTTTCCT+AGG 0.543908 7:+21420713 MsG0780037184.01.T01:CDS
GAGGACAGTACAACAACTAC+AGG 0.547409 7:+21422337 MsG0780037184.01.T01:CDS
GAATGAGAAGAAGTTGGAGA+AGG 0.552897 7:-21420296 None:intergenic
AGATGATCCAAAACCCAAGA+AGG 0.568710 7:+21422362 MsG0780037184.01.T01:CDS
TCAGGCGCCCTATGGGAGGG+GGG 0.579236 7:+21422304 MsG0780037184.01.T01:intron
GGAAGAGGATGATGATAACT+GGG 0.591765 7:+21422383 MsG0780037184.01.T01:CDS
TTAAATTGATGCAAGAAGGG+AGG 0.592234 7:-21422650 None:intergenic
TCATTGCGGCTTAGAACAAG+TGG 0.596369 7:-21420406 None:intergenic
TCCAAAACCCAAGAAGGAAG+AGG 0.600608 7:+21422368 MsG0780037184.01.T01:CDS
TAACTGGGATCTACCTGAAG+AGG 0.601353 7:+21422398 MsG0780037184.01.T01:CDS
TGTGATTGATGAAGAAGAAG+AGG 0.615508 7:-21420431 None:intergenic
ATAAGATTTCAGAGAATCGA+GGG 0.621881 7:-21422613 None:intergenic
CATAAGATTTCAGAGAATCG+AGG 0.639001 7:-21422614 None:intergenic
CTTGAAGCAATATCTTGTGG+TGG 0.652375 7:-21420484 None:intergenic
AAACTTGAAGCAATATCTTG+TGG 0.676754 7:-21420487 None:intergenic
ATGCTGCTAAGCGTAATCGT+AGG 0.678424 7:+21420698 MsG0780037184.01.T01:CDS
AAGATGATGAGCCTGAAGAG+AGG 0.695325 7:+21420566 MsG0780037184.01.T01:CDS
GTGGTATGAACTTGTTGTTG+CGG 0.697044 7:-21420387 None:intergenic
AAGAAGAAGAGGTTTCATTG+CGG 0.710769 7:-21420420 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATTTTCTTAAATTATTAA+CGG - Chr7:21420897-21420916 None:intergenic 10.0%
!! AAATACAATAATTAAGTCTA+AGG - Chr7:21422536-21422555 None:intergenic 15.0%
!! GTTAATTATAATCAAATTCA+TGG + Chr7:21421372-21421391 MsG0780037184.01.T01:intron 15.0%
!! AATATCTATATTAGATTGGA+TGG + Chr7:21421245-21421264 MsG0780037184.01.T01:intron 20.0%
!! ACAAAAAATTAAATGAAGCA+CGG - Chr7:21421011-21421030 None:intergenic 20.0%
!! ACAATAACTTGAACATTATA+TGG - Chr7:21420544-21420563 None:intergenic 20.0%
!! ATAATCAAATTCATGGATAA+TGG + Chr7:21421379-21421398 MsG0780037184.01.T01:intron 20.0%
!! CAAATAACATTTAGTAATCT+GGG + Chr7:21421510-21421529 MsG0780037184.01.T01:intron 20.0%
!! CAATCTAATATAGATATTTG+TGG - Chr7:21421243-21421262 None:intergenic 20.0%
!! CACAAATATCTATATTAGAT+TGG + Chr7:21421241-21421260 MsG0780037184.01.T01:intron 20.0%
!! TAATCAAATTCATGGATAAT+GGG + Chr7:21421380-21421399 MsG0780037184.01.T01:intron 20.0%
!! TCAAATAACATTTAGTAATC+TGG + Chr7:21421509-21421528 MsG0780037184.01.T01:intron 20.0%
!! TGAAAAATCATACATAATGT+GGG - Chr7:21422452-21422471 None:intergenic 20.0%
!! TTTAATAATGTTCAAATTCG+TGG - Chr7:21421300-21421319 None:intergenic 20.0%
!!! GTAGCTTAATTTATTTTGTT+GGG + Chr7:21421997-21422016 MsG0780037184.01.T01:intron 20.0%
!!! TAGCTTAATTTATTTTGTTG+GGG + Chr7:21421998-21422017 MsG0780037184.01.T01:intron 20.0%
!!! TGTAGCTTAATTTATTTTGT+TGG + Chr7:21421996-21422015 MsG0780037184.01.T01:intron 20.0%
!!! TTTGTTTTTGTTAACTGTTT+TGG + Chr7:21420778-21420797 MsG0780037184.01.T01:intron 20.0%
! AATCAAATTCATGGATAATG+GGG + Chr7:21421381-21421400 MsG0780037184.01.T01:intron 25.0%
! ATTCACATAATAACATACCT+AGG - Chr7:21420733-21420752 None:intergenic 25.0%
! ATTTAACATTGATGCATTCT+CGG + Chr7:21421123-21421142 MsG0780037184.01.T01:intron 25.0%
! GAAAAATCATACATAATGTG+GGG - Chr7:21422451-21422470 None:intergenic 25.0%
! GTGAAAAATCATACATAATG+TGG - Chr7:21422453-21422472 None:intergenic 25.0%
! TCATAACAATACCATTATCA+AGG - Chr7:21421797-21421816 None:intergenic 25.0%
! TCTTAAATTATTAACGGTGT+TGG - Chr7:21420891-21420910 None:intergenic 25.0%
! TTGTTGGGGTTATTAAATAT+AGG + Chr7:21422012-21422031 MsG0780037184.01.T01:intron 25.0%
! TTTATGAAGTTGTCAGATTT+AGG + Chr7:21421470-21421489 MsG0780037184.01.T01:intron 25.0%
!! TTTATTTAAAACCTCCAGTT+GGG + Chr7:21422203-21422222 MsG0780037184.01.T01:intron 25.0%
!!! AAAGTTGATGTTTCAACTTA+TGG - Chr7:21421839-21421858 None:intergenic 25.0%
!!! ATTTAATTTTTTGTGTGGAC+TGG + Chr7:21421017-21421036 MsG0780037184.01.T01:intron 25.0%
!!! GCTTCATTTAATTTTTTGTG+TGG + Chr7:21421012-21421031 MsG0780037184.01.T01:intron 25.0%
!!! TAGTGTTTTGATTTATGACT+GGG + Chr7:21421716-21421735 MsG0780037184.01.T01:intron 25.0%
!!! TTTAATTTTTTGTGTGGACT+GGG + Chr7:21421018-21421037 MsG0780037184.01.T01:intron 25.0%
AAACTTGAAGCAATATCTTG+TGG - Chr7:21420490-21420509 None:intergenic 30.0%
AAATTTAGTACATCCTCTTC+AGG - Chr7:21422414-21422433 None:intergenic 30.0%
ACACTATCATGTTAGGTAAA+TGG + Chr7:21421631-21421650 MsG0780037184.01.T01:intron 30.0%
ATAACATTTAGTAATCTGGG+AGG + Chr7:21421513-21421532 MsG0780037184.01.T01:intron 30.0%
ATAAGATTTCAGAGAATCGA+GGG - Chr7:21422616-21422635 None:intergenic 30.0%
ATTTGAACACATGAGAATTG+TGG + Chr7:21421350-21421369 MsG0780037184.01.T01:intron 30.0%
CATCTGTAATACCTTGATAA+TGG + Chr7:21421783-21421802 MsG0780037184.01.T01:intron 30.0%
CATTTCATTCGAGTATTCTT+GGG + Chr7:21421196-21421215 MsG0780037184.01.T01:intron 30.0%
GGGGTTATTAAATATAGGTT+TGG + Chr7:21422017-21422036 MsG0780037184.01.T01:intron 30.0%
TAAATATAGGTTTGGATCAG+AGG + Chr7:21422025-21422044 MsG0780037184.01.T01:intron 30.0%
TAAATGGTTGTAGAGAAAGA+TGG + Chr7:21421647-21421666 MsG0780037184.01.T01:intron 30.0%
TTCTCATGTTGTAGGTAAAA+TGG + Chr7:21421677-21421696 MsG0780037184.01.T01:intron 30.0%
! AGGTAGTTGATATCAATTTC+AGG + Chr7:21421533-21421552 MsG0780037184.01.T01:intron 30.0%
! ATTTTCAGCAACATCATCAA+TGG + Chr7:21420261-21420280 MsG0780037184.01.T01:exon 30.0%
! CTTTATTTAAAACCTCCAGT+TGG + Chr7:21422202-21422221 MsG0780037184.01.T01:intron 30.0%
! TTATTTAAAACCTCCAGTTG+GGG + Chr7:21422204-21422223 MsG0780037184.01.T01:intron 30.0%
! TTTTCACATTTTACTGTGAG+AGG + Chr7:21422466-21422485 MsG0780037184.01.T01:three_prime_UTR 30.0%
!! CTTGATATTTTGAGCAATCA+CGG + Chr7:21422085-21422104 MsG0780037184.01.T01:intron 30.0%
!!! AAGGTTTTTTGAGAATACTC+AGG + Chr7:21420651-21420670 MsG0780037184.01.T01:CDS 30.0%
!!! CAACTGGAGGTTTTAAATAA+AGG - Chr7:21422204-21422223 None:intergenic 30.0%
!!! CTAGTGTTTTGATTTATGAC+TGG + Chr7:21421715-21421734 MsG0780037184.01.T01:intron 30.0%
!!! TCAGTGTTTGGTTTTAGTAT+TGG + Chr7:21420824-21420843 MsG0780037184.01.T01:intron 30.0%
AAATTTGAACCTAAGACCTC+TGG + Chr7:21421150-21421169 MsG0780037184.01.T01:intron 35.0%
AAGAAGAAGAGGTTTCATTG+CGG - Chr7:21420423-21420442 None:intergenic 35.0%
ACGAAGAAGAATTCAGTGTT+TGG + Chr7:21420812-21420831 MsG0780037184.01.T01:intron 35.0%
CATAAGATTTCAGAGAATCG+AGG - Chr7:21422617-21422636 None:intergenic 35.0%
CCAAGAATACTCGAATGAAA+TGG - Chr7:21421198-21421217 None:intergenic 35.0%
CCATTTCATTCGAGTATTCT+TGG + Chr7:21421195-21421214 MsG0780037184.01.T01:intron 35.0%
CTCTCTTCATGTCGTATATT+TGG - Chr7:21421940-21421959 None:intergenic 35.0%
GAGCTAGATATGACTGTAAT+GGG + Chr7:21421078-21421097 MsG0780037184.01.T01:intron 35.0%
GTTAACACAATTCACACTCA+TGG - Chr7:21421449-21421468 None:intergenic 35.0%
GTTGATGTTTCAACTTATGG+TGG - Chr7:21421836-21421855 None:intergenic 35.0%
GTTGTAGGTAAAATGGAAGT+AGG + Chr7:21421684-21421703 MsG0780037184.01.T01:intron 35.0%
TATTCAAATAAGTCGTGACC+CGG - Chr7:21420984-21421003 None:intergenic 35.0%
TGCAATTGATGTCACATTGA+TGG - Chr7:21422118-21422137 None:intergenic 35.0%
TGTGATTGATGAAGAAGAAG+AGG - Chr7:21420434-21420453 None:intergenic 35.0%
! CAAGGTATTACAGATGCATT+TGG - Chr7:21421779-21421798 None:intergenic 35.0%
! TGCATGTGAATGTGTTCTTT+TGG + Chr7:21421871-21421890 MsG0780037184.01.T01:intron 35.0%
! TTCAAGAGTGTAAGAGAAGA+AGG + Chr7:21420632-21420651 MsG0780037184.01.T01:CDS 35.0%
!! AAGAGCGTTTAGAGCTTATT+TGG - Chr7:21421756-21421775 None:intergenic 35.0%
!! AGTATTCTTGGGCTAGTATT+AGG + Chr7:21421207-21421226 MsG0780037184.01.T01:intron 35.0%
!! CTCGATTCTCTGAAATCTTA+TGG + Chr7:21422615-21422634 MsG0780037184.01.T01:three_prime_UTR 35.0%
!!! CATCAATTGCAGTTTTGTTG+CGG + Chr7:21422127-21422146 MsG0780037184.01.T01:intron 35.0%
ACCTAAGACCTCTGGTTAAA+CGG + Chr7:21421158-21421177 MsG0780037184.01.T01:intron 40.0%
ACTCATGGTTAGTGATGTGT+TGG - Chr7:21421434-21421453 None:intergenic 40.0%
AGATGATCCAAAACCCAAGA+AGG + Chr7:21422362-21422381 MsG0780037184.01.T01:CDS 40.0%
AGGAAGAGGATGATGATAAC+TGG + Chr7:21422382-21422401 MsG0780037184.01.T01:CDS 40.0%
ATCATCATCCTCTTCCTTCT+TGG - Chr7:21422379-21422398 None:intergenic 40.0%
ATCTCTTTCCGTTTAACCAG+AGG - Chr7:21421169-21421188 None:intergenic 40.0%
CGAGCTAGATATGACTGTAA+TGG + Chr7:21421077-21421096 MsG0780037184.01.T01:intron 40.0%
CTATTAAGCAACCTCTCTTC+AGG - Chr7:21420580-21420599 None:intergenic 40.0%
CTGAAGAGAGGTTGCTTAAT+AGG + Chr7:21420578-21420597 MsG0780037184.01.T01:CDS 40.0%
CTGTGTCACACTATCATGTT+AGG + Chr7:21421624-21421643 MsG0780037184.01.T01:intron 40.0%
CTTGAAGCAATATCTTGTGG+TGG - Chr7:21420487-21420506 None:intergenic 40.0%
GAAAATGATGCAAGACACAC+AGG - Chr7:21422286-21422305 None:intergenic 40.0%
GAATGAGAAGAAGTTGGAGA+AGG - Chr7:21420299-21420318 None:intergenic 40.0%
GCTTAATAGGTTTCGTAGAG+AGG + Chr7:21420591-21420610 MsG0780037184.01.T01:CDS 40.0%
GGAAGAGGATGATGATAACT+GGG + Chr7:21422383-21422402 MsG0780037184.01.T01:CDS 40.0%
GTTCATCGTTCTCATGTTGT+AGG + Chr7:21421669-21421688 MsG0780037184.01.T01:intron 40.0%
TAGTTGTTGTACTGTCCTCT+TGG - Chr7:21422336-21422355 None:intergenic 40.0%
TATATGTGCCCGTATTGTGT+CGG + Chr7:21420933-21420952 MsG0780037184.01.T01:intron 40.0%
TCATCATCCTCTTCCTTCTT+GGG - Chr7:21422378-21422397 None:intergenic 40.0%
TGAAGGGAATGAGAAGAAGT+TGG - Chr7:21420305-21420324 None:intergenic 40.0%
TGGATCAGAGGTTTAAACAG+CGG + Chr7:21422037-21422056 MsG0780037184.01.T01:intron 40.0%
TGTTCAAATCTACCTGCAGT+TGG - Chr7:21421339-21421358 None:intergenic 40.0%
TTTCAGGAATCAACCTTTCC+TGG + Chr7:21421549-21421568 MsG0780037184.01.T01:intron 40.0%
! ATTTCAAGTGATCCAACTGC+AGG + Chr7:21421324-21421343 MsG0780037184.01.T01:intron 40.0%
! CGATTTTTGACAAGCACATG+TGG - Chr7:21421585-21421604 None:intergenic 40.0%
! CTAACATGATAGTGTGACAC+AGG - Chr7:21421626-21421645 None:intergenic 40.0%
! GTGTGTCTTGCATCATTTTC+AGG + Chr7:21422286-21422305 MsG0780037184.01.T01:intron 40.0%
! TACAGTCATATCTAGCTCGA+GGG - Chr7:21421076-21421095 None:intergenic 40.0%
! TTACAGTCATATCTAGCTCG+AGG - Chr7:21421077-21421096 None:intergenic 40.0%
!! GTGGTATGAACTTGTTGTTG+CGG - Chr7:21420390-21420409 None:intergenic 40.0%
!!! TGAACTTGTTGTTGCGGTTT+TGG - Chr7:21420384-21420403 None:intergenic 40.0%
!!! TTGCAGTTTTGTTGCGGTTT+TGG + Chr7:21422133-21422152 MsG0780037184.01.T01:intron 40.0%
AAGATGATGAGCCTGAAGAG+AGG + Chr7:21420566-21420585 MsG0780037184.01.T01:CDS 45.0%
ACATGTGGAAAACATACGCC+AGG - Chr7:21421570-21421589 None:intergenic 45.0%
ACTACTGTGAAGGTAGTTCC+AGG + Chr7:21421911-21421930 MsG0780037184.01.T01:intron 45.0%
ATCGTAGGAACAGGTTTCCT+AGG + Chr7:21420713-21420732 MsG0780037184.01.T01:CDS 45.0%
ATGCTGCTAAGCGTAATCGT+AGG + Chr7:21420698-21420717 MsG0780037184.01.T01:CDS 45.0%
ATGTCAAACGACGAGAAAGG+GGG - Chr7:21422250-21422269 None:intergenic 45.0%
ATGTCGTATATTTGGTCCCC+TGG - Chr7:21421932-21421951 None:intergenic 45.0%
CATGTCAAACGACGAGAAAG+GGG - Chr7:21422251-21422270 None:intergenic 45.0%
CCATGTCAAACGACGAGAAA+GGG - Chr7:21422252-21422271 None:intergenic 45.0%
CTAAGCGTAATCGTAGGAAC+AGG + Chr7:21420704-21420723 MsG0780037184.01.T01:CDS 45.0%
CTACTGTGAAGGTAGTTCCA+GGG + Chr7:21421912-21421931 MsG0780037184.01.T01:intron 45.0%
GACAGCAAGAACTACTGTGA+AGG + Chr7:21421901-21421920 MsG0780037184.01.T01:intron 45.0%
GAGGACAGTACAACAACTAC+AGG + Chr7:21422337-21422356 MsG0780037184.01.T01:CDS 45.0%
GCAATATCTTGTGGTGGTTG+TGG - Chr7:21420481-21420500 None:intergenic 45.0%
GGTTAGTGATGTGTTGGACT+TGG - Chr7:21421428-21421447 None:intergenic 45.0%
GGTTGTTGTGGTGACTTTGT+TGG - Chr7:21420331-21420350 None:intergenic 45.0%
TAACTGGGATCTACCTGAAG+AGG + Chr7:21422398-21422417 MsG0780037184.01.T01:CDS 45.0%
TACTGTGAAGGTAGTTCCAG+GGG + Chr7:21421913-21421932 MsG0780037184.01.T01:intron 45.0%
TCATTGCGGCTTAGAACAAG+TGG - Chr7:21420409-21420428 None:intergenic 45.0%
TCCAAAACCCAAGAAGGAAG+AGG + Chr7:21422368-21422387 MsG0780037184.01.T01:CDS 45.0%
TCCATGTCAAACGACGAGAA+AGG - Chr7:21422253-21422272 None:intergenic 45.0%
TCCGTTTAACCAGAGGTCTT+AGG - Chr7:21421162-21421181 None:intergenic 45.0%
TGGAAAACATACGCCAGGAA+AGG - Chr7:21421565-21421584 None:intergenic 45.0%
TGGTTATGAAGCACAGACAC+CGG + Chr7:21420844-21420863 MsG0780037184.01.T01:intron 45.0%
TGTTGTGGTGACTTTGTTGG+TGG - Chr7:21420328-21420347 None:intergenic 45.0%
! TCCTCTTCCTTCTTGGGTTT+TGG - Chr7:21422372-21422391 None:intergenic 45.0%
!! ATCATTTTCAGGCGCCCTAT+GGG + Chr7:21422297-21422316 MsG0780037184.01.T01:intron 45.0%
!! GTGACTTTGTTGGTGGTGAA+GGG - Chr7:21420321-21420340 None:intergenic 45.0%
!! TGTTGCGGTTTTGGTGAGAT+GGG - Chr7:21420375-21420394 None:intergenic 45.0%
!! TTGTTGCGGTTTTGGCAACA+CGG + Chr7:21422141-21422160 MsG0780037184.01.T01:intron 45.0%
!! TTGTTGCGGTTTTGGTGAGA+TGG - Chr7:21420376-21420395 None:intergenic 45.0%
ACACCACATGTGTTCGACAC+CGG + Chr7:21420962-21420981 MsG0780037184.01.T01:intron 50.0%
AGAAGAGAGGGTGGTTGTTG+TGG - Chr7:21420343-21420362 None:intergenic 50.0%
CCCTTTCTCGTCGTTTGACA+TGG + Chr7:21422249-21422268 MsG0780037184.01.T01:intron 50.0%
CGTAGAGAGGTTATGAGAGC+TGG + Chr7:21420604-21420623 MsG0780037184.01.T01:CDS 50.0%
GGGTATGGAGAGAGAAGAGA+GGG - Chr7:21420355-21420374 None:intergenic 50.0%
TATGGAGAGAGAAGAGAGGG+TGG - Chr7:21420352-21420371 None:intergenic 50.0%
TGGGTATGGAGAGAGAAGAG+AGG - Chr7:21420356-21420375 None:intergenic 50.0%
TGTCAAACGACGAGAAAGGG+GGG - Chr7:21422249-21422268 None:intergenic 50.0%
TGTCCGACACCGACACAATA+CGG - Chr7:21420945-21420964 None:intergenic 50.0%
! GAGAGGCTTTGTCTGCATGT+AGG + Chr7:21422483-21422502 MsG0780037184.01.T01:three_prime_UTR 50.0%
!! CATCATTTTCAGGCGCCCTA+TGG + Chr7:21422296-21422315 MsG0780037184.01.T01:intron 50.0%
!! CGGTTTTGGTGAGATGGGTA+TGG - Chr7:21420370-21420389 None:intergenic 50.0%
!! GGTGACTTTGTTGGTGGTGA+AGG - Chr7:21420322-21420341 None:intergenic 50.0%
!! TTGTGTGGACTGGGTATCTC+TGG + Chr7:21421027-21421046 MsG0780037184.01.T01:intron 50.0%
CACCACATGTGTTCGACACC+GGG + Chr7:21420963-21420982 MsG0780037184.01.T01:intron 55.0%
CCATGTCATGACACCCCAAC+TGG - Chr7:21422220-21422239 None:intergenic 55.0%
GTCCGACACCGACACAATAC+GGG - Chr7:21420944-21420963 None:intergenic 55.0%
TGTCAGTGTCGTGTCGTGTC+CGG - Chr7:21420866-21420885 None:intergenic 55.0%
TGTCATGACACCCCAACTGG+AGG - Chr7:21422217-21422236 None:intergenic 55.0%
! CCAGTTGGGGTGTCATGACA+TGG + Chr7:21422217-21422236 MsG0780037184.01.T01:intron 55.0%
! TGCCCGTATTGTGTCGGTGT+CGG + Chr7:21420939-21420958 MsG0780037184.01.T01:intron 55.0%
!! ATTTTCAGGCGCCCTATGGG+AGG + Chr7:21422300-21422319 MsG0780037184.01.T01:intron 55.0%
!! TTTTCAGGCGCCCTATGGGA+GGG + Chr7:21422301-21422320 MsG0780037184.01.T01:intron 55.0%
CACTGCTCAGCTTGCAGTCG+CGG + Chr7:21422177-21422196 MsG0780037184.01.T01:intron 60.0%
GTGACTTCCCCCCTCCCATA+GGG - Chr7:21422314-21422333 None:intergenic 60.0%
TTTCAGGCGCCCTATGGGAG+GGG + Chr7:21422302-21422321 MsG0780037184.01.T01:intron 60.0%
! GACCCGGTGTCGAACACATG+TGG - Chr7:21420968-21420987 None:intergenic 60.0%
GGAGGGGGGAAGTCACCAAG+AGG + Chr7:21422318-21422337 MsG0780037184.01.T01:CDS 65.0%
GGTGACTTCCCCCCTCCCAT+AGG - Chr7:21422315-21422334 None:intergenic 65.0%
TTCAGGCGCCCTATGGGAGG+GGG + Chr7:21422303-21422322 MsG0780037184.01.T01:intron 65.0%
TCAGGCGCCCTATGGGAGGG+GGG + Chr7:21422304-21422323 MsG0780037184.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 21420249 21422662 21420249 ID=MsG0780037184.01;Name=MsG0780037184.01
Chr7 mRNA 21420249 21422662 21420249 ID=MsG0780037184.01.T01;Parent=MsG0780037184.01;Name=MsG0780037184.01.T01;_AED=0.34;_eAED=0.34;_QI=31|1|1|1|1|1|2|225|194
Chr7 exon 21420249 21420734 21420249 ID=MsG0780037184.01.T01:exon:4203;Parent=MsG0780037184.01.T01
Chr7 exon 21422308 21422662 21422308 ID=MsG0780037184.01.T01:exon:4204;Parent=MsG0780037184.01.T01
Chr7 five_prime_UTR 21420249 21420279 21420249 ID=MsG0780037184.01.T01:five_prime_utr;Parent=MsG0780037184.01.T01
Chr7 CDS 21420280 21420734 21420280 ID=MsG0780037184.01.T01:cds;Parent=MsG0780037184.01.T01
Chr7 CDS 21422308 21422437 21422308 ID=MsG0780037184.01.T01:cds;Parent=MsG0780037184.01.T01
Chr7 three_prime_UTR 21422438 21422662 21422438 ID=MsG0780037184.01.T01:three_prime_utr;Parent=MsG0780037184.01.T01
Gene Sequence

>MsG0780037184.01.T01

ATGGCTCTCTCAACTTCCTTCTCCAACTTCTTCTCATTCCCTTCACCACCAACAAAGTCACCACAACAACCACCCTCTCTTCTCTCTCCATACCCATCTCACCAAAACCGCAACAACAAGTTCATACCACTTGTTCTAAGCCGCAATGAAACCTCTTCTTCTTCATCAATCACATCATCATCATCATCATCTTCTTCACCACAACCACCACAAGATATTGCTTCAAGTTTCTCAACATCAAACTCTATGTTCTTAGCATCACCATATAATGTTCAAGTTATTGTTGAAGATGATGAGCCTGAAGAGAGGTTGCTTAATAGGTTTCGTAGAGAGGTTATGAGAGCTGGTATTATTCAAGAGTGTAAGAGAAGAAGGTTTTTTGAGAATACTCAGGATGAGAAGAAAAGAAGAGTTCGTGATGCTGCTAAGCGTAATCGTAGGAACAGGTTTCCTAGGCGCCCTATGGGAGGGGGGAAGTCACCAAGAGGACAGTACAACAACTACAGGCAAGATGATCCAAAACCCAAGAAGGAAGAGGATGATGATAACTGGGATCTACCTGAAGAGGATGTACTAAATTTTTAA

Protein sequence

>MsG0780037184.01.T01

MALSTSFSNFFSFPSPPTKSPQQPPSLLSPYPSHQNRNNKFIPLVLSRNETSSSSSITSSSSSSSSPQPPQDIASSFSTSNSMFLASPYNVQVIVEDDEPEERLLNRFRREVMRAGIIQECKRRRFFENTQDEKKRRVRDAAKRNRRNRFPRRPMGGGKSPRGQYNNYRQDDPKPKKEEDDDNWDLPEEDVLNF*