AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680034671.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034671.01.T01 MTR_6g071330 99.225 129 1 0 1 129 1 129 5.22e-92 262
MsG0680034671.01.T01 MTR_5g048060 98.450 129 2 0 1 129 1 129 1.34e-91 261
MsG0680034671.01.T01 MTR_6g071330 100.000 85 0 0 1 85 1 85 1.74e-57 173
MsG0680034671.01.T01 MTR_5g048060 95.890 73 3 0 57 129 21 93 1.20e-48 151
MsG0680034671.01.T01 MTR_8g104980 40.945 127 75 0 1 127 1 127 1.19e-26 96.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034671.01.T01 AT1G48440 67.442 129 42 0 1 129 1 129 7.48e-64 191
MsG0680034671.01.T01 AT3G17780 65.891 129 44 0 1 129 1 129 2.38e-56 172
MsG0680034671.01.T01 AT5G17190 40.310 129 77 0 1 129 1 129 4.62e-31 107
MsG0680034671.01.T01 AT3G03160 39.535 129 78 0 1 129 1 129 5.19e-30 105

Find 31 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTGTTGTTCTTGCTTTAA+TGG 0.181707 6:-92581879 None:intergenic
TTTGCTGGGTTTCAGCTTCT+TGG 0.198760 6:+92582123 MsG0680034671.01.T01:CDS
CCATGCTTTGAATATCCTTC+TGG 0.286675 6:-92586029 None:intergenic
ATGTACCAAACCTTGAACTA+TGG 0.340575 6:+92586176 MsG0680034671.01.T01:three_prime_UTR
ATATTTCACCTATTATATAT+AGG 0.362870 6:-92586296 None:intergenic
CGATTTAGCCTATATATAAT+AGG 0.383752 6:+92586288 MsG0680034671.01.T01:three_prime_UTR
TTGCAGCATGCCTACTCTAT+TGG 0.401049 6:+92585703 MsG0680034671.01.T01:CDS
GATGAGTGTGCCATAGTTCA+AGG 0.416021 6:-92586186 None:intergenic
CCTTCTGGAACTTGCAAATA+CGG 0.424179 6:-92586014 None:intergenic
GTTTGTTTGTAGATATATAC+TGG 0.433318 6:+92584701 MsG0680034671.01.T01:intron
AAACGGTTCCTCAAAAGCTT+TGG 0.438768 6:-92582051 None:intergenic
TGAGGGATCTTTAGTTTGTA+CGG 0.471618 6:+92586133 MsG0680034671.01.T01:three_prime_UTR
ATTTCTTCGTTATTATCGAT+CGG 0.516001 6:-92581902 None:intergenic
GTGTGCCATAGTTCAAGGTT+TGG 0.517406 6:-92586181 None:intergenic
AGAAGCTGAAACCCAGCAAA+GGG 0.519753 6:-92582120 None:intergenic
GTGAAATCAGAGAAGTCAAA+CGG 0.558473 6:-92582068 None:intergenic
ATTCACTTTACCAATAGAGT+AGG 0.563900 6:-92585713 None:intergenic
GTTTGTAGATATATACTGGA+AGG 0.575505 6:+92584705 MsG0680034671.01.T01:intron
TTCCTCAAAAGCTTTGGTGA+AGG 0.577938 6:-92582045 None:intergenic
AAGGGAACAATGAAAAGCGC+AGG 0.586062 6:-92582102 None:intergenic
CATAAGCGATGGCATTGCAG+TGG 0.588334 6:+92581965 MsG0680034671.01.T01:exon
AAGAAGCTGAAACCCAGCAA+AGG 0.595675 6:-92582121 None:intergenic
CCGTATTTGCAAGTTCCAGA+AGG 0.597829 6:+92586014 MsG0680034671.01.T01:CDS
CCAGAAGGATATTCAAAGCA+TGG 0.600664 6:+92586029 MsG0680034671.01.T01:CDS
TATACTGGAAGGCTGAGCAT+AGG 0.629820 6:+92584716 MsG0680034671.01.T01:CDS
AGCTTCAATAGCCACCACAT+AGG 0.668450 6:-92581998 None:intergenic
AGCAGCAGTACAAACATCAG+AGG 0.677855 6:-92584749 None:intergenic
GTGGATGATACTCACCTATG+TGG 0.692942 6:+92581984 MsG0680034671.01.T01:CDS
GATGATACTCACCTATGTGG+TGG 0.722992 6:+92581987 MsG0680034671.01.T01:CDS
GAAGGATATTCAAAGCATGG+AGG 0.736068 6:+92586032 MsG0680034671.01.T01:CDS
TGGTACATCATACATCACAG+TGG 0.808198 6:-92586161 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATGAGAAATATAAATTT+TGG + Chr6:92585895-92585914 MsG0680034671.01.T01:intron 10.0%
!!! TAATGATTTAAAATAGAATT+CGG + Chr6:92583431-92583450 MsG0680034671.01.T01:intron 10.0%
!!! TAATGATTTAGAATAAAATT+CGG - Chr6:92583361-92583380 None:intergenic 10.0%
!! AAAAAAAATTGTTATCAAAC+AGG - Chr6:92583798-92583817 None:intergenic 15.0%
!! AAATTAAATAACACAAATTC+AGG - Chr6:92584077-92584096 None:intergenic 15.0%
!! AATTTACTATATAAATGTCA+TGG - Chr6:92585330-92585349 None:intergenic 15.0%
!! ATATTTCACCTATTATATAT+AGG - Chr6:92586299-92586318 None:intergenic 15.0%
!! ATGTATATTTGAACATAATT+TGG + Chr6:92584337-92584356 MsG0680034671.01.T01:intron 15.0%
!! ATTTACTATATAAATGTCAT+GGG - Chr6:92585329-92585348 None:intergenic 15.0%
!! GAATATATATAGAAGTAATA+AGG - Chr6:92585199-92585218 None:intergenic 15.0%
!!! AATGTTTAATTTTTGAGTTT+TGG + Chr6:92582214-92582233 MsG0680034671.01.T01:intron 15.0%
!!! ATGTTTAATTTTTGAGTTTT+GGG + Chr6:92582215-92582234 MsG0680034671.01.T01:intron 15.0%
!!! ATTAATGATTTCAAGTATAT+TGG + Chr6:92584912-92584931 MsG0680034671.01.T01:intron 15.0%
!!! TTTCTTCTTTTTGATTTAAT+GGG + Chr6:92582151-92582170 MsG0680034671.01.T01:intron 15.0%
!!! TTTTCTTCTTTTTGATTTAA+TGG + Chr6:92582150-92582169 MsG0680034671.01.T01:intron 15.0%
!!! TTTTTTATTGTTGTGATATT+TGG + Chr6:92586237-92586256 MsG0680034671.01.T01:three_prime_UTR 15.0%
!! AAAGTTACAAAATTAATACC+GGG + Chr6:92585080-92585099 MsG0680034671.01.T01:intron 20.0%
!! AATTTCGACATCAATATAAA+TGG + Chr6:92584128-92584147 MsG0680034671.01.T01:intron 20.0%
!! ATATTTGAACATAATTTGGA+TGG + Chr6:92584341-92584360 MsG0680034671.01.T01:intron 20.0%
!! ATTGATATGATACATTATCT+TGG + Chr6:92583051-92583070 MsG0680034671.01.T01:intron 20.0%
!! ATTTAAACACTTGAAAATTG+TGG + Chr6:92584381-92584400 MsG0680034671.01.T01:intron 20.0%
!! CAAAAGATCTATATATCATA+GGG + Chr6:92584023-92584042 MsG0680034671.01.T01:intron 20.0%
!! GAAAGTTACAAAATTAATAC+CGG + Chr6:92585079-92585098 MsG0680034671.01.T01:intron 20.0%
!! GCAAAATCAAATGTAAATTT+CGG + Chr6:92585108-92585127 MsG0680034671.01.T01:intron 20.0%
!! GTTTATAACGTTCAAAATTA+TGG - Chr6:92584252-92584271 None:intergenic 20.0%
!! TAAAAGAGTAAAATGACATA+AGG - Chr6:92583213-92583232 None:intergenic 20.0%
!! TCAAAAGATCTATATATCAT+AGG + Chr6:92584022-92584041 MsG0680034671.01.T01:intron 20.0%
!! TTAAATCATTAGAATTCCTA+GGG - Chr6:92583422-92583441 None:intergenic 20.0%
!! TTCAAATATACATGATTATC+AGG - Chr6:92584330-92584349 None:intergenic 20.0%
!! TTGTTTCGTATGAAAATTAA+CGG + Chr6:92582180-92582199 MsG0680034671.01.T01:intron 20.0%
!! TTTAAATCATTAGAATTCCT+AGG - Chr6:92583423-92583442 None:intergenic 20.0%
!! TTTACTATATAAATGTCATG+GGG - Chr6:92585328-92585347 None:intergenic 20.0%
!! TTTATTTGTGCTCAAAATTA+TGG - Chr6:92584274-92584293 None:intergenic 20.0%
!! TTTGTATCTAAATGAAAACA+TGG + Chr6:92585970-92585989 MsG0680034671.01.T01:intron 20.0%
!!! AATAAATCTTTGAAAGCATT+TGG + Chr6:92584972-92584991 MsG0680034671.01.T01:intron 20.0%
!!! AATACTTCGAATTTTGTTTT+TGG + Chr6:92585768-92585787 MsG0680034671.01.T01:intron 20.0%
!!! AATTTCTTGTTTTTCTGTAA+CGG + Chr6:92582264-92582283 MsG0680034671.01.T01:intron 20.0%
!!! AATTTTGTGTGAAAATTGAT+GGG + Chr6:92582295-92582314 MsG0680034671.01.T01:intron 20.0%
!!! AGTATTGAATGATAGTTTTA+GGG + Chr6:92583479-92583498 MsG0680034671.01.T01:intron 20.0%
!!! ATATAGATCTTTTGATAAAG+TGG - Chr6:92584017-92584036 None:intergenic 20.0%
!!! ATTAATTTGATACAATACCT+TGG - Chr6:92582988-92583007 None:intergenic 20.0%
!!! ATTTTGAAAGTTTTTCAATC+TGG + Chr6:92582464-92582483 MsG0680034671.01.T01:intron 20.0%
!!! CAAATTGCATGTTTTTTTTA+AGG + Chr6:92585823-92585842 MsG0680034671.01.T01:intron 20.0%
!!! GAAAACTGTAAGTAATTTTA+CGG + Chr6:92584789-92584808 MsG0680034671.01.T01:intron 20.0%
!!! GATTTTATCAAATTTCACTA+CGG - Chr6:92585449-92585468 None:intergenic 20.0%
!!! TAATTTTGTGTGAAAATTGA+TGG + Chr6:92582294-92582313 MsG0680034671.01.T01:intron 20.0%
!!! TAGTATTGAATGATAGTTTT+AGG + Chr6:92583478-92583497 MsG0680034671.01.T01:intron 20.0%
!!! TGAGAAATATAAATTTTGGA+TGG + Chr6:92585899-92585918 MsG0680034671.01.T01:intron 20.0%
!!! TTGAATCTTTTTTGAAACTT+GGG + Chr6:92583884-92583903 MsG0680034671.01.T01:intron 20.0%
!!! TTTAAGATTACTAGTTATCT+GGG + Chr6:92582573-92582592 MsG0680034671.01.T01:intron 20.0%
!!! TTTGAATCTTTTTTGAAACT+TGG + Chr6:92583883-92583902 MsG0680034671.01.T01:intron 20.0%
!!! TTTTAAGATTACTAGTTATC+TGG + Chr6:92582572-92582591 MsG0680034671.01.T01:intron 20.0%
!!! TTTTGAAAGTTTTTCAATCT+GGG + Chr6:92582465-92582484 MsG0680034671.01.T01:intron 20.0%
! AACAGTTAAACTTATGTGTA+GGG - Chr6:92585149-92585168 None:intergenic 25.0%
! AATCATAAAATGTGAAACTC+TGG + Chr6:92585603-92585622 MsG0680034671.01.T01:intron 25.0%
! ACAATACCAACATTCATTAT+AGG - Chr6:92585943-92585962 None:intergenic 25.0%
! ATATATGGTTAATTACGTTC+AGG - Chr6:92584492-92584511 None:intergenic 25.0%
! ATATGATACATTATCTTGGA+TGG + Chr6:92583055-92583074 MsG0680034671.01.T01:intron 25.0%
! ATCCTCTTCATATAAAAAAG+TGG + Chr6:92586375-92586394 MsG0680034671.01.T01:three_prime_UTR 25.0%
! ATTTCTTCGTTATTATCGAT+CGG - Chr6:92581905-92581924 None:intergenic 25.0%
! CAATACCAACATTCATTATA+GGG - Chr6:92585942-92585961 None:intergenic 25.0%
! CGATTTAGCCTATATATAAT+AGG + Chr6:92586288-92586307 MsG0680034671.01.T01:three_prime_UTR 25.0%
! GTTCAAGCAGTTTAAATATA+TGG - Chr6:92584507-92584526 None:intergenic 25.0%
! GTTTGTTTGTAGATATATAC+TGG + Chr6:92584701-92584720 MsG0680034671.01.T01:intron 25.0%
! TAAAATGATGTTCAAAGTAG+TGG + Chr6:92584405-92584424 MsG0680034671.01.T01:intron 25.0%
! TAACAGTTAAACTTATGTGT+AGG - Chr6:92585150-92585169 None:intergenic 25.0%
! TATATGGTTAATTACGTTCA+GGG - Chr6:92584491-92584510 None:intergenic 25.0%
! TGATTAATTATCTTGGTATG+TGG + Chr6:92582430-92582449 MsG0680034671.01.T01:intron 25.0%
! TGTTTCGTATGAAAATTAAC+GGG + Chr6:92582181-92582200 MsG0680034671.01.T01:intron 25.0%
! TTAGGGATGATTATTTATCT+GGG + Chr6:92583839-92583858 MsG0680034671.01.T01:intron 25.0%
! TTCAATGTAATCACATATGT+CGG + Chr6:92582671-92582690 MsG0680034671.01.T01:intron 25.0%
! TTGAAATCTCAAAATGACAA+TGG - Chr6:92584578-92584597 None:intergenic 25.0%
! TTTAACCCTATAATGAATGT+TGG + Chr6:92585934-92585953 MsG0680034671.01.T01:intron 25.0%
! TTTAGGGATGATTATTTATC+TGG + Chr6:92583838-92583857 MsG0680034671.01.T01:intron 25.0%
! TTTGTAGAGACAAAAAAATG+AGG - Chr6:92585800-92585819 None:intergenic 25.0%
!! ATATTGATTGATTGCAAATG+AGG + Chr6:92583526-92583545 MsG0680034671.01.T01:intron 25.0%
!! ATATTGATTGATTGCATATG+AGG - Chr6:92583269-92583288 None:intergenic 25.0%
!! ATTCAATTGATAAGCTTTTG+GGG + Chr6:92582548-92582567 MsG0680034671.01.T01:intron 25.0%
!! CTAGATTCATAAGTTGAATA+GGG + Chr6:92583924-92583943 MsG0680034671.01.T01:intron 25.0%
!! GATTCAATTGATAAGCTTTT+GGG + Chr6:92582547-92582566 MsG0680034671.01.T01:intron 25.0%
!! TGATTCAATTGATAAGCTTT+TGG + Chr6:92582546-92582565 MsG0680034671.01.T01:intron 25.0%
!! TTAGGGTTGATTAATTATCT+TGG + Chr6:92582423-92582442 MsG0680034671.01.T01:intron 25.0%
!!! AATCTGGTGTTATTAAATAG+CGG + Chr6:92585418-92585437 MsG0680034671.01.T01:intron 25.0%
!!! AATCTTTGTTTTTTGAGTTG+TGG + Chr6:92582328-92582347 MsG0680034671.01.T01:intron 25.0%
!!! ATCTTTGTTTTTTGAGTTGT+GGG + Chr6:92582329-92582348 MsG0680034671.01.T01:intron 25.0%
!!! ATGTTTTTTTTAAGGACACA+CGG + Chr6:92585831-92585850 MsG0680034671.01.T01:intron 25.0%
!!! ATTTCTTGTTTTTCTGTAAC+GGG + Chr6:92582265-92582284 MsG0680034671.01.T01:intron 25.0%
!!! ATTTTACTCTTTTAGCTTTG+AGG + Chr6:92583219-92583238 MsG0680034671.01.T01:intron 25.0%
!!! TAAGCTTTTTTTAACAGATG+AGG - Chr6:92582803-92582822 None:intergenic 25.0%
!!! TGGAAAAATCTTTGCTTTTA+GGG + Chr6:92582406-92582425 MsG0680034671.01.T01:intron 25.0%
!!! TTGAAAGCATTTGGTAATAA+AGG + Chr6:92584981-92585000 MsG0680034671.01.T01:intron 25.0%
!!! TTTTACTCTTTTAGCTTTGA+GGG + Chr6:92583220-92583239 MsG0680034671.01.T01:intron 25.0%
AAGTTTAAATACAACCCTCA+AGG + Chr6:92583558-92583577 MsG0680034671.01.T01:intron 30.0%
ACTTGAGACTTGGATTATAT+CGG + Chr6:92583391-92583410 MsG0680034671.01.T01:intron 30.0%
ATATGGTTAATTACGTTCAG+GGG - Chr6:92584490-92584509 None:intergenic 30.0%
ATTCACTTTACCAATAGAGT+AGG - Chr6:92585716-92585735 None:intergenic 30.0%
CACTTAGATTCTATTTGGAA+AGG + Chr6:92583713-92583732 MsG0680034671.01.T01:intron 30.0%
CTTTCCAAATAGAATCTAAG+TGG - Chr6:92583715-92583734 None:intergenic 30.0%
GAAATCATTAATCCAAGCTA+TGG - Chr6:92584904-92584923 None:intergenic 30.0%
GAGAAGATCCATATATCATA+GGG + Chr6:92582749-92582768 MsG0680034671.01.T01:intron 30.0%
GTTTGTAGATATATACTGGA+AGG + Chr6:92584705-92584724 MsG0680034671.01.T01:intron 30.0%
TAAAAGAGTAAACTGACGTA+AGG + Chr6:92583582-92583601 MsG0680034671.01.T01:intron 30.0%
TAATTATCTTGGTATGTGGT+TGG + Chr6:92582434-92582453 MsG0680034671.01.T01:intron 30.0%
TAGAAGTAATAAGGACATGA+AGG - Chr6:92585190-92585209 None:intergenic 30.0%
TGAGAAGATCCATATATCAT+AGG + Chr6:92582748-92582767 MsG0680034671.01.T01:intron 30.0%
TGATTATTTATCTGGGTATG+TGG + Chr6:92583846-92583865 MsG0680034671.01.T01:intron 30.0%
TGCATATCACAGAAAATAGT+GGG - Chr6:92585566-92585585 None:intergenic 30.0%
TGGAAAAATTGATGTGTTTG+TGG + Chr6:92582386-92582405 MsG0680034671.01.T01:intron 30.0%
TTGAGGGTTGTATTTAAACT+TGG - Chr6:92583255-92583236 None:intergenic 30.0%
TTGCATATCACAGAAAATAG+TGG - Chr6:92585567-92585586 None:intergenic 30.0%
TTGGAATTTGAAAACGACAA+CGG + Chr6:92582861-92582880 MsG0680034671.01.T01:intron 30.0%
! ACATTCTTTGCATGTTTCTA+AGG + Chr6:92585021-92585040 MsG0680034671.01.T01:intron 30.0%
! AGTGAATTTCTGTGTCTTTT+TGG + Chr6:92585729-92585748 MsG0680034671.01.T01:intron 30.0%
! GCTAGATTCATAAGTTGAAT+AGG + Chr6:92583923-92583942 MsG0680034671.01.T01:intron 30.0%
! GTTATCAAACAGGTCTATTT+TGG - Chr6:92583788-92583807 None:intergenic 30.0%
! GTTTCATGCACTTTTATGAT+TGG + Chr6:92585057-92585076 MsG0680034671.01.T01:intron 30.0%
! GTTTCTGTTTGTTGATTGTT+TGG + Chr6:92583984-92584003 MsG0680034671.01.T01:intron 30.0%
! TAAGTTGAAGTTGAAAAACG+TGG - Chr6:92584618-92584637 None:intergenic 30.0%
! TAGTAAAAGAGAGCTTTTGA+GGG + Chr6:92586116-92586135 MsG0680034671.01.T01:three_prime_UTR 30.0%
! TCTCTTTTACCTCAAAAGAT+AGG - Chr6:92586348-92586367 None:intergenic 30.0%
! TGTTGTTGTTCTTGCTTTAA+TGG - Chr6:92581882-92581901 None:intergenic 30.0%
! TTAGTAAAAGAGAGCTTTTG+AGG + Chr6:92586115-92586134 MsG0680034671.01.T01:three_prime_UTR 30.0%
! TTCAATTGATAAGCTTTTGG+GGG + Chr6:92582549-92582568 MsG0680034671.01.T01:intron 30.0%
!! ATATCATAGGGTACTTTTGT+GGG + Chr6:92582761-92582780 MsG0680034671.01.T01:intron 30.0%
!! CAAAAGTACCCTATGATATA+TGG - Chr6:92582760-92582779 None:intergenic 30.0%
!! GTGGAAAAATCTTTGCTTTT+AGG + Chr6:92582405-92582424 MsG0680034671.01.T01:intron 30.0%
!! TAGCGTTGAAATTTTGACAA+CGG - Chr6:92583686-92583705 None:intergenic 30.0%
!! TATATCATAGGGTACTTTTG+TGG + Chr6:92582760-92582779 MsG0680034671.01.T01:intron 30.0%
!!! AATTTTTTTTCACCAGCTTG+TGG + Chr6:92583808-92583827 MsG0680034671.01.T01:intron 30.0%
!!! ATTTTTGAGTTTTGGGTTTG+TGG + Chr6:92582222-92582241 MsG0680034671.01.T01:intron 30.0%
!!! CTCCACTTTTTTATATGAAG+AGG - Chr6:92586380-92586399 None:intergenic 30.0%
!!! CTGGGATGGATTTTTTTTTT+TGG + Chr6:92582483-92582502 MsG0680034671.01.T01:intron 30.0%
!!! TTTTTGAGTTTTGGGTTTGT+GGG + Chr6:92582223-92582242 MsG0680034671.01.T01:intron 30.0%
AAACTTGGGATGAATTGTGT+TGG + Chr6:92583898-92583917 MsG0680034671.01.T01:intron 35.0%
AAGGAAGATTGTGAAATGCA+TGG + Chr6:92582904-92582923 MsG0680034671.01.T01:intron 35.0%
AAGTTGAATAGGGCTTAAGA+GGG + Chr6:92583934-92583953 MsG0680034671.01.T01:intron 35.0%
AATGGAAAATGAGTCGAGTA+GGG - Chr6:92584560-92584579 None:intergenic 35.0%
ACACTTTATTCCTGTAACAG+AGG - Chr6:92583159-92583178 None:intergenic 35.0%
AGGAAGATTGTGAAATGCAT+GGG + Chr6:92582905-92582924 MsG0680034671.01.T01:intron 35.0%
ATAATCCAAGTCTCAAGTGT+AGG - Chr6:92583389-92583408 None:intergenic 35.0%
ATCTTCATCTCCTTATTGCT+TGG + Chr6:92585235-92585254 MsG0680034671.01.T01:intron 35.0%
ATGTACCAAACCTTGAACTA+TGG + Chr6:92586176-92586195 MsG0680034671.01.T01:three_prime_UTR 35.0%
ATGTCTGAGCAGGAAAAAAA+TGG - Chr6:92585653-92585672 None:intergenic 35.0%
GAACACAATAGCCACATATT+TGG - Chr6:92584164-92584183 None:intergenic 35.0%
GTGAAATCAGAGAAGTCAAA+CGG - Chr6:92582071-92582090 None:intergenic 35.0%
GTTAATGCAGTCCAAATATG+TGG + Chr6:92584150-92584169 MsG0680034671.01.T01:intron 35.0%
TAAGTTGCAGTTGAAAAAGG+AGG + Chr6:92582821-92582840 MsG0680034671.01.T01:intron 35.0%
TCCAAATAGAATCTAAGTGG+TGG - Chr6:92583712-92583731 None:intergenic 35.0%
TCCACCACTTAGATTCTATT+TGG + Chr6:92583708-92583727 MsG0680034671.01.T01:intron 35.0%
TCTAAATGAAAACATGGACG+TGG + Chr6:92585976-92585995 MsG0680034671.01.T01:intron 35.0%
TGGATCTTCTCAAAAAGCTT+CGG - Chr6:92582740-92582759 None:intergenic 35.0%
TTGTACTAGATAGCGTATCA+CGG - Chr6:92585481-92585500 None:intergenic 35.0%
TTTATTCCTGTAACAGAGGA+AGG - Chr6:92583155-92583174 None:intergenic 35.0%
! AAGTAGTGGTTAGTTGTGTT+CGG + Chr6:92584419-92584438 MsG0680034671.01.T01:intron 35.0%
! ACACGGTATTGTGATTTGTA+GGG + Chr6:92585848-92585867 MsG0680034671.01.T01:intron 35.0%
! CTGTTTGTTGATTGTTTGGT+AGG + Chr6:92583988-92584007 MsG0680034671.01.T01:intron 35.0%
! GCGATTATTTTCATAAGCGA+TGG + Chr6:92581938-92581957 MsG0680034671.01.T01:five_prime_UTR 35.0%
! GCTTAAGTTGCAGTTGAAAA+AGG + Chr6:92582818-92582837 MsG0680034671.01.T01:intron 35.0%
! GTTCTACTTCCTATCTTTTG+AGG + Chr6:92586336-92586355 MsG0680034671.01.T01:three_prime_UTR 35.0%
! TAAGTTGAATAGGGCTTAAG+AGG + Chr6:92583933-92583952 MsG0680034671.01.T01:intron 35.0%
! TTTTCATTGTTCCCTTTGCT+GGG + Chr6:92582109-92582128 MsG0680034671.01.T01:CDS 35.0%
!! ATATCATAGGGTGCTTTTGT+GGG + Chr6:92584035-92584054 MsG0680034671.01.T01:intron 35.0%
!! CATTTGATTTTGCTTCTTCC+CGG - Chr6:92585101-92585120 None:intergenic 35.0%
!! GAAAGTTTTTCAATCTGGGA+TGG + Chr6:92582469-92582488 MsG0680034671.01.T01:intron 35.0%
!! GATGGTTGATGACTATCAAA+AGG - Chr6:92584468-92584487 None:intergenic 35.0%
!! GTTTGTTGTTGACTTCAATC+TGG + Chr6:92585402-92585421 MsG0680034671.01.T01:intron 35.0%
!! TATATCATAGGGTGCTTTTG+TGG + Chr6:92584034-92584053 MsG0680034671.01.T01:intron 35.0%
!! TGAGGGATCTTTAGTTTGTA+CGG + Chr6:92586133-92586152 MsG0680034671.01.T01:three_prime_UTR 35.0%
!! TGCTAGATTCACTTTTGAGT+TGG + Chr6:92582507-92582526 MsG0680034671.01.T01:intron 35.0%
!! TGTGGTTGGTTGTGAAATTT+TGG + Chr6:92582366-92582385 MsG0680034671.01.T01:intron 35.0%
!!! AGATTCACTTTTGAGTTGGT+GGG + Chr6:92582511-92582530 MsG0680034671.01.T01:intron 35.0%
!!! AGTTTACTCTTTTAGCCTTG+AGG - Chr6:92583576-92583595 None:intergenic 35.0%
!!! GTTTACTCTTTTAGCCTTGA+GGG - Chr6:92583575-92583594 None:intergenic 35.0%
!!! TAGATTCACTTTTGAGTTGG+TGG + Chr6:92582510-92582529 MsG0680034671.01.T01:intron 35.0%
!!! TTTTTGAGTTGTGGGTTTGT+AGG + Chr6:92582337-92582356 MsG0680034671.01.T01:intron 35.0%
AAACGGTTCCTCAAAAGCTT+TGG - Chr6:92582054-92582073 None:intergenic 40.0%
AAGGTTGTGAAACACATTGG+GGG - Chr6:92583136-92583155 None:intergenic 40.0%
ACATTATCTTGGATGGAGAG+TGG + Chr6:92583062-92583081 MsG0680034671.01.T01:intron 40.0%
AGGAAGGTTGTGAAACACAT+TGG - Chr6:92583139-92583158 None:intergenic 40.0%
ATGTGGCTATTGTGTTCAGT+GGG + Chr6:92584167-92584186 MsG0680034671.01.T01:intron 40.0%
ATTATCTTGGATGGAGAGTG+GGG + Chr6:92583064-92583083 MsG0680034671.01.T01:intron 40.0%
CAATGGAAAATGAGTCGAGT+AGG - Chr6:92584561-92584580 None:intergenic 40.0%
CAGAGAGAAACAAAGATCAG+TGG - Chr6:92582958-92582977 None:intergenic 40.0%
CATTATCTTGGATGGAGAGT+GGG + Chr6:92583063-92583082 MsG0680034671.01.T01:intron 40.0%
CCAGAAGGATATTCAAAGCA+TGG + Chr6:92586029-92586048 MsG0680034671.01.T01:CDS 40.0%
CTCAAAAAGCTTCGGATGAA+AGG - Chr6:92582732-92582751 None:intergenic 40.0%
GAAAAGTTGGATAGGCAGAA+AGG + Chr6:92582885-92582904 MsG0680034671.01.T01:intron 40.0%
GAAGGATATTCAAAGCATGG+AGG + Chr6:92586032-92586051 MsG0680034671.01.T01:CDS 40.0%
GAAGGTTGTGAAACACATTG+GGG - Chr6:92583137-92583156 None:intergenic 40.0%
GAATTCCTACACTTGAGACT+TGG + Chr6:92583381-92583400 MsG0680034671.01.T01:intron 40.0%
GATGATGAAAGACCATAGCT+TGG + Chr6:92584889-92584908 MsG0680034671.01.T01:intron 40.0%
GGAAGGTTGTGAAACACATT+GGG - Chr6:92583138-92583157 None:intergenic 40.0%
GTTGAAGTTGAAAAACGTGG+TGG - Chr6:92584615-92584634 None:intergenic 40.0%
TACCATCAAGCCAAGCAATA+AGG - Chr6:92585248-92585267 None:intergenic 40.0%
TATGTGGCTATTGTGTTCAG+TGG + Chr6:92584166-92584185 MsG0680034671.01.T01:intron 40.0%
TGGTACATCATACATCACAG+TGG - Chr6:92586164-92586183 None:intergenic 40.0%
TTACTAGTTATCTGGGTGTC+TGG + Chr6:92582580-92582599 MsG0680034671.01.T01:intron 40.0%
TTGATTGCAAATGAGGCACA+AGG + Chr6:92583533-92583552 MsG0680034671.01.T01:intron 40.0%
TTGATTGCATATGAGGCACA+AGG - Chr6:92583262-92583281 None:intergenic 40.0%
TTTCTCTCTGTCTTCATCCA+AGG + Chr6:92582968-92582987 MsG0680034671.01.T01:intron 40.0%
! AAAATCTAGCTTGTAGCGGA+TGG + Chr6:92583738-92583757 MsG0680034671.01.T01:intron 40.0%
! ATCCGCTACAAGCTAGATTT+TGG - Chr6:92583739-92583758 None:intergenic 40.0%
! CACACGGTATTGTGATTTGT+AGG + Chr6:92585847-92585866 MsG0680034671.01.T01:intron 40.0%
! CACTCAGCTCTGTATTTTCA+TGG + Chr6:92586208-92586227 MsG0680034671.01.T01:three_prime_UTR 40.0%
! CCATGCTTTGAATATCCTTC+TGG - Chr6:92586032-92586051 None:intergenic 40.0%
! CTTTTCATTGTTCCCTTTGC+TGG + Chr6:92582108-92582127 MsG0680034671.01.T01:CDS 40.0%
! GTGTGTTGGTATGTGTAACT+CGG - Chr6:92585294-92585313 None:intergenic 40.0%
! TACTTCAAGTGTGCTGATCT+TGG - Chr6:92583101-92583120 None:intergenic 40.0%
! TTCCTCAAAAGCTTTGGTGA+AGG - Chr6:92582048-92582067 None:intergenic 40.0%
! TTCCTTCACCAAAGCTTTTG+AGG + Chr6:92582043-92582062 MsG0680034671.01.T01:CDS 40.0%
!! AGCTTGTGGTGGATAGTTTA+GGG + Chr6:92583822-92583841 MsG0680034671.01.T01:intron 40.0%
!! CCTTCTGGAACTTGCAAATA+CGG - Chr6:92586017-92586036 None:intergenic 40.0%
!! GGTGGTGTTACAATTAGTGT+TGG + Chr6:92582842-92582861 MsG0680034671.01.T01:intron 40.0%
!! TCACATATGTCGGTGTCAAA+CGG + Chr6:92582681-92582700 MsG0680034671.01.T01:intron 40.0%
!! TGAAATTTTGACAACGGCAG+CGG - Chr6:92583680-92583699 None:intergenic 40.0%
!! TTTGTAGGTTGGTATGTGGT+TGG + Chr6:92582352-92582371 MsG0680034671.01.T01:intron 40.0%
!!! TTTTTTTCACCAGCTTGTGG+TGG + Chr6:92583811-92583830 MsG0680034671.01.T01:intron 40.0%
AAAACATGGACGTGGTGACA+GGG + Chr6:92585984-92586003 MsG0680034671.01.T01:intron 45.0%
AAACGACAACGGCGAAAAGT+TGG + Chr6:92582872-92582891 MsG0680034671.01.T01:intron 45.0%
AAGAAGCTGAAACCCAGCAA+AGG - Chr6:92582124-92582143 None:intergenic 45.0%
ACAACGGCGAAAAGTTGGAT+AGG + Chr6:92582877-92582896 MsG0680034671.01.T01:intron 45.0%
AGAAGCTGAAACCCAGCAAA+GGG - Chr6:92582123-92582142 None:intergenic 45.0%
AGCAGCAGTACAAACATCAG+AGG - Chr6:92584752-92584771 None:intergenic 45.0%
AGCTTCAATAGCCACCACAT+AGG - Chr6:92582001-92582020 None:intergenic 45.0%
AGTGGCAATTGAAAGAGCAG+TGG - Chr6:92582940-92582959 None:intergenic 45.0%
ATGTGAAACTCTGGCTGTGT+CGG + Chr6:92585612-92585631 MsG0680034671.01.T01:intron 45.0%
CCGTATTTGCAAGTTCCAGA+AGG + Chr6:92586014-92586033 MsG0680034671.01.T01:CDS 45.0%
CTAAACTATCCACCACAAGC+TGG - Chr6:92583823-92583842 None:intergenic 45.0%
CTTGGGATGAATTGTGTTGG+TGG + Chr6:92583901-92583920 MsG0680034671.01.T01:intron 45.0%
GATGAGTGTGCCATAGTTCA+AGG - Chr6:92586189-92586208 None:intergenic 45.0%
GATGATACTCACCTATGTGG+TGG + Chr6:92581987-92582006 MsG0680034671.01.T01:CDS 45.0%
GCTATAGCATTGCTGTGTAG+CGG + Chr6:92585529-92585548 MsG0680034671.01.T01:intron 45.0%
GGTTAATTACGTTCAGGGGA+TGG - Chr6:92584486-92584505 None:intergenic 45.0%
GTGGATGATACTCACCTATG+TGG + Chr6:92581984-92582003 MsG0680034671.01.T01:CDS 45.0%
GTGTGCCATAGTTCAAGGTT+TGG - Chr6:92586184-92586203 None:intergenic 45.0%
GTTGCAGTTGAAAAAGGAGG+TGG + Chr6:92582824-92582843 MsG0680034671.01.T01:intron 45.0%
TAAATTTCGGCCATCATCGC+AGG + Chr6:92585121-92585140 MsG0680034671.01.T01:intron 45.0%
TATACTGGAAGGCTGAGCAT+AGG + Chr6:92584716-92584735 MsG0680034671.01.T01:CDS 45.0%
TCACAACCTTCCTCTGTTAC+AGG + Chr6:92583146-92583165 MsG0680034671.01.T01:intron 45.0%
TGAGTTGTGGGTTTGTAGGT+TGG + Chr6:92582341-92582360 MsG0680034671.01.T01:intron 45.0%
TTGCAGCATGCCTACTCTAT+TGG + Chr6:92585703-92585722 MsG0680034671.01.T01:CDS 45.0%
TTTGCTGGGTTTCAGCTTCT+TGG + Chr6:92582123-92582142 MsG0680034671.01.T01:CDS 45.0%
! AAGGGAACAATGAAAAGCGC+AGG - Chr6:92582105-92582124 None:intergenic 45.0%
! ACTTTTGTGGGATCTACTGG+TGG + Chr6:92582773-92582792 MsG0680034671.01.T01:intron 45.0%
! CTCCTTATTGCTTGGCTTGA+TGG + Chr6:92585243-92585262 MsG0680034671.01.T01:intron 45.0%
! CTTCGGATGAAAGGCATGTA+AGG - Chr6:92582723-92582742 None:intergenic 45.0%
! GGCCAAAATCTAGCTTGTAG+CGG + Chr6:92583734-92583753 MsG0680034671.01.T01:intron 45.0%
! GGTACTTTTGTGGGATCTAC+TGG + Chr6:92582770-92582789 MsG0680034671.01.T01:intron 45.0%
! TAGTGGTTAGTTGTGTTCGG+TGG + Chr6:92584422-92584441 MsG0680034671.01.T01:intron 45.0%
! TCTTGGTATGTGGTTGGTTG+TGG + Chr6:92582440-92582459 MsG0680034671.01.T01:intron 45.0%
! TGAGCTTTGTATGTCTGAGC+AGG - Chr6:92585663-92585682 None:intergenic 45.0%
!! CAGCTTGTGGTGGATAGTTT+AGG + Chr6:92583821-92583840 MsG0680034671.01.T01:intron 45.0%
!! GAAATTTTGACAACGGCAGC+GGG - Chr6:92583679-92583698 None:intergenic 45.0%
!! GATTATATCGGTTCGTCCCT+AGG + Chr6:92583403-92583422 MsG0680034671.01.T01:intron 45.0%
!! TGGGTTTGTAGGTTGGTATG+TGG + Chr6:92582348-92582367 MsG0680034671.01.T01:intron 45.0%
ATGAGTCGAGTAGGGTGGAA+AGG - Chr6:92584552-92584571 None:intergenic 50.0%
CATAAGCGATGGCATTGCAG+TGG + Chr6:92581965-92581984 MsG0680034671.01.T01:exon 50.0%
GAAAACATGGACGTGGTGAC+AGG + Chr6:92585983-92586002 MsG0680034671.01.T01:intron 50.0%
GGAAAATGAGTCGAGTAGGG+TGG - Chr6:92584557-92584576 None:intergenic 50.0%
GGCTATTGTGTTCAGTGGGA+TGG + Chr6:92584171-92584190 MsG0680034671.01.T01:intron 50.0%
! GGTGCTTTTGTGGGATCTAC+TGG + Chr6:92584044-92584063 MsG0680034671.01.T01:intron 50.0%
! TGAAAGGCATGTAAGGTGCC+TGG - Chr6:92582716-92582735 None:intergenic 50.0%
!!! GAGTTTTGGGTTTGTGGGTG+TGG + Chr6:92582228-92582247 MsG0680034671.01.T01:intron 50.0%
AGTAGGGTGGAAAGGAAGGC+TGG - Chr6:92584544-92584563 None:intergenic 55.0%
CTCGGCATCTCTTGCGTTTG+AGG - Chr6:92585276-92585295 None:intergenic 55.0%
GGGTGTGTGTGTGTGTGTGT+TGG - Chr6:92585308-92585327 None:intergenic 55.0%
GTAGGGTGGAAAGGAAGGCT+GGG - Chr6:92584543-92584562 None:intergenic 55.0%
GTCAAACGGTGACACATGCC+AGG + Chr6:92582695-92582714 MsG0680034671.01.T01:intron 55.0%
GTCGAGTAGGGTGGAAAGGA+AGG - Chr6:92584548-92584567 None:intergenic 55.0%
GTGTAGGGTTCCTGCGATGA+TGG - Chr6:92585134-92585153 None:intergenic 55.0%
GGGAAGCGGTTCAAGCAGAG+AGG - Chr6:92583659-92583678 None:intergenic 60.0%
TTGACAACGGCAGCGGGAAG+CGG - Chr6:92583673-92583692 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 92581878 92586414 92581878 ID=MsG0680034671.01;Name=MsG0680034671.01
Chr6 mRNA 92581878 92586414 92581878 ID=MsG0680034671.01.T01;Parent=MsG0680034671.01;Name=MsG0680034671.01.T01;_AED=0.41;_eAED=0.41;_QI=95|1|1|1|1|1|4|331|129
Chr6 exon 92581878 92582144 92581878 ID=MsG0680034671.01.T01:exon:12864;Parent=MsG0680034671.01.T01
Chr6 exon 92584713 92584795 92584713 ID=MsG0680034671.01.T01:exon:12865;Parent=MsG0680034671.01.T01
Chr6 exon 92585669 92585724 92585669 ID=MsG0680034671.01.T01:exon:12866;Parent=MsG0680034671.01.T01
Chr6 exon 92586005 92586414 92586005 ID=MsG0680034671.01.T01:exon:12867;Parent=MsG0680034671.01.T01
Chr6 five_prime_UTR 92581878 92581972 92581878 ID=MsG0680034671.01.T01:five_prime_utr;Parent=MsG0680034671.01.T01
Chr6 CDS 92581973 92582144 92581973 ID=MsG0680034671.01.T01:cds;Parent=MsG0680034671.01.T01
Chr6 CDS 92584713 92584795 92584713 ID=MsG0680034671.01.T01:cds;Parent=MsG0680034671.01.T01
Chr6 CDS 92585669 92585724 92585669 ID=MsG0680034671.01.T01:cds;Parent=MsG0680034671.01.T01
Chr6 CDS 92586005 92586083 92586005 ID=MsG0680034671.01.T01:cds;Parent=MsG0680034671.01.T01
Chr6 three_prime_UTR 92586084 92586414 92586084 ID=MsG0680034671.01.T01:three_prime_utr;Parent=MsG0680034671.01.T01
Gene Sequence

>MsG0680034671.01.T01

ATGGCATTGCAGTGGATGATACTCACCTATGTGGTGGCTATTGAAGCTGCTGTAGCGATTCTTCTAACACTTCCTTCACCAAAGCTTTTGAGGAACCGTTTGACTTCTCTGATTTCACTTATTCTTCAACCTGCGCTTTTCATTGTTCCCTTTGCTGGGTTTCAGCTTCTTGATATATACTGGAAGGCTGAGCATAGGTTGATGTGTACCTCTGATGTTTGTACTGCTGCTGAGAGAGATCGCTATGAGAAAACTACATACAAAGCTCAGAGAAACGTGATACTGTGTATTGCAGCATGCCTACTCTATTGGGCTATATACCGTATTTGCAAGTTCCAGAAGGATATTCAAAGCATGGAGGAAGTTGAGAAGAGAATCAAGTCGAAGTAG

Protein sequence

>MsG0680034671.01.T01

MALQWMILTYVVAIEAAVAILLTLPSPKLLRNRLTSLISLILQPALFIVPFAGFQLLDIYWKAEHRLMCTSDVCTAAERDRYEKTTYKAQRNVILCIAACLLYWAIYRICKFQKDIQSMEEVEKRIKSK*