AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280011341.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011341.01.T01 MTR_2g102450 85.649 439 33 4 1 438 1 410 0.0 704
MsG0280011341.01.T01 MTR_2g102450 74.487 439 28 6 1 438 1 356 0.0 578
MsG0280011341.01.T01 MTR_4g008310 78.857 175 37 0 55 229 128 302 3.10e-84 261
MsG0280011341.01.T01 MTR_3g101520 41.176 221 124 2 9 229 5 219 3.72e-44 154
MsG0280011341.01.T01 MTR_3g101520 40.724 221 117 3 9 229 5 211 6.66e-44 153
MsG0280011341.01.T01 MTR_4g101970 34.902 255 128 13 184 418 51 287 5.16e-20 91.7
MsG0280011341.01.T01 MTR_1g035460 38.636 88 51 2 137 224 192 276 7.18e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011341.01.T01 AT5G58280 47.755 245 96 4 12 229 5 244 2.60e-62 204
MsG0280011341.01.T01 AT5G58280 47.347 245 98 4 12 229 5 245 3.18e-61 201
MsG0280011341.01.T01 AT5G58280 47.489 219 103 3 12 229 5 212 2.29e-55 185
MsG0280011341.01.T01 AT3G19184 43.388 242 117 6 12 251 8 231 2.16e-43 154
MsG0280011341.01.T01 AT3G19184 43.388 242 117 6 12 251 8 231 4.32e-43 153
MsG0280011341.01.T01 AT5G42700 40.807 223 115 4 10 229 7 215 7.87e-42 148
MsG0280011341.01.T01 AT5G42700 53.043 115 53 1 116 229 56 170 1.06e-33 125

Find 73 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATTTCTGTCAATGTTT+TGG 0.183464 2:+82659959 None:intergenic
ACAAGATTAGTCATTGATTT+TGG 0.193878 2:+82659815 None:intergenic
ATTTGCATTGAAACATAAAT+TGG 0.234518 2:-82658791 MsG0280011341.01.T01:CDS
GGTTGAAGCAGCAAGATTTA+AGG 0.234558 2:-82658740 MsG0280011341.01.T01:intron
TCGAGGTGTGCATCCTCTTT+TGG 0.264938 2:+82657330 None:intergenic
GGCCGCTTCATACTTGTTAC+TGG 0.280232 2:+82660834 None:intergenic
ACAAATTTATCATCTGTCTT+TGG 0.306337 2:+82658892 None:intergenic
ATACGAAGGAACTGTGTTTC+TGG 0.317329 2:+82659766 None:intergenic
ATCAATGACTAATCTTGTTC+TGG 0.319215 2:-82659810 MsG0280011341.01.T01:CDS
TGTATCTGAGAAGATTCTTT+TGG 0.324472 2:-82657244 MsG0280011341.01.T01:CDS
TTAAATCAGAGGAAACTTCT+AGG 0.340932 2:-82657413 MsG0280011341.01.T01:CDS
TCGAAGACTGCAAATTGAAT+TGG 0.346865 2:+82659151 None:intergenic
TTCCTCAAGTCTTTGTTCTC+TGG 0.355734 2:+82660813 None:intergenic
GGCAACTTTGTAGCTGCCTC+TGG 0.368043 2:+82657297 None:intergenic
ACTTCCATATGAATTCTGTT+AGG 0.377357 2:+82657666 None:intergenic
AAAAGAAGAAATCGATGCTT+TGG 0.405663 2:-82657568 MsG0280011341.01.T01:CDS
TTTACCGTAGATTTCTTTGC+TGG 0.411866 2:+82659933 None:intergenic
AGCATTGACTTGATAAATGA+TGG 0.425290 2:+82659126 None:intergenic
CCTCTGGTTTCACTGTTTCG+AGG 0.427493 2:+82657313 None:intergenic
ATGTTCCTCACAAAATCTAC+TGG 0.429660 2:+82658918 None:intergenic
ACGTGCTTGGGATGCGGCAG+AGG 0.447956 2:-82659178 MsG0280011341.01.T01:CDS
CTTGACCTCCTCTGCAATTG+TGG 0.451277 2:+82659366 None:intergenic
CAAAGTTGCCAAACAAGAAA+AGG 0.458834 2:-82657284 MsG0280011341.01.T01:CDS
TTCATACTTGTTACTGGTAG+TGG 0.459676 2:+82660840 None:intergenic
ACCTGCAGTAATGTATTGTC+AGG 0.461672 2:+82657633 None:intergenic
CTCAAGAAAGAAAACGTGCT+TGG 0.462354 2:-82659191 MsG0280011341.01.T01:CDS
GATTTAACAGTTTCAGACTT+TGG 0.463466 2:+82657429 None:intergenic
GTGTCCTAACAGAATTCATA+TGG 0.467690 2:-82657670 MsG0280011341.01.T01:CDS
CGCTTACGCTGCGAGGCCAC+TGG 0.471761 2:-82659235 MsG0280011341.01.T01:CDS
GGAAAACAAGAAGAGGTTTG+AGG 0.478514 2:-82660794 MsG0280011341.01.T01:intron
TCAAGAAAGAAAACGTGCTT+GGG 0.482815 2:-82659190 MsG0280011341.01.T01:CDS
CTAATCTTGTTCTGGAACCT+AGG 0.484454 2:-82659802 MsG0280011341.01.T01:CDS
AAAGAAAACTAGAATGCAAA+AGG 0.490045 2:-82657475 MsG0280011341.01.T01:CDS
TCGACATCAACATCCTCAAC+AGG 0.494792 2:+82657174 None:intergenic
GTCAAGGTCAAGTTCGTCAT+GGG 0.498280 2:-82659343 MsG0280011341.01.T01:CDS
ACCTCCTCTGCAATTGTGGA+AGG 0.511132 2:+82659370 None:intergenic
GAAGACTGACTTAGAGAAGA+AGG 0.513775 2:-82657202 MsG0280011341.01.T01:CDS
AAAATGGGCTTAGTGGTGGC+TGG 0.515469 2:-82658819 MsG0280011341.01.T01:CDS
TCCTGACAATACATTACTGC+AGG 0.518133 2:-82657634 MsG0280011341.01.T01:CDS
AAGAAAAGGAAGGCAAAAGA+AGG 0.525873 2:-82657270 MsG0280011341.01.T01:CDS
TACTGCAATTGAGCCAAAAG+AGG 0.526506 2:-82657343 MsG0280011341.01.T01:CDS
GGGCTTAGTGGTGGCTGGAG+AGG 0.533204 2:-82658814 MsG0280011341.01.T01:CDS
AGTTCCTTCGTATGCTGAAG+AGG 0.549926 2:-82659756 MsG0280011341.01.T01:intron
ATTTGAAAATATAGATGTAG+AGG 0.552770 2:-82657595 MsG0280011341.01.T01:CDS
ATCGATGCTTTGGTGGAAGA+CGG 0.557466 2:-82657558 MsG0280011341.01.T01:CDS
AGAAGAAATCGATGCTTTGG+TGG 0.560673 2:-82657565 MsG0280011341.01.T01:CDS
ACCTTCCACAATTGCAGAGG+AGG 0.564311 2:-82659371 MsG0280011341.01.T01:CDS
CACAATTGCAGAGGAGGTCA+AGG 0.568720 2:-82659365 MsG0280011341.01.T01:CDS
TTGAAACATAAATTGGATGA+TGG 0.570936 2:-82658784 MsG0280011341.01.T01:CDS
AACAGCTATAAACATGAGAC+CGG 0.574078 2:+82659103 None:intergenic
AAGAAAACGTGCTTGGGATG+CGG 0.574526 2:-82659184 MsG0280011341.01.T01:CDS
CATTTATCAAGTCAATGCTC+CGG 0.576831 2:-82659122 MsG0280011341.01.T01:CDS
GCTACTTTGATTTCATCCAG+TGG 0.577540 2:+82659219 None:intergenic
GGTCAAGTTCGTCATGGGGA+AGG 0.581595 2:-82659338 MsG0280011341.01.T01:intron
GTCTGAAACTGTTAAATCAG+AGG 0.582113 2:-82657424 MsG0280011341.01.T01:CDS
GGTCAAGGTCAAGTTCGTCA+TGG 0.586271 2:-82659344 MsG0280011341.01.T01:CDS
GACTTGAGGAAAACAAGAAG+AGG 0.599382 2:-82660801 MsG0280011341.01.T01:CDS
CTGGCACGAGAAGAGCGCCT+AGG 0.600809 2:+82659785 None:intergenic
TACCAGTAACAAGTATGAAG+CGG 0.609161 2:-82660836 MsG0280011341.01.T01:CDS
TGTTCCTCACAAAATCTACT+GGG 0.611018 2:+82658919 None:intergenic
TGCAGAGGAGGTCAAGGTCA+AGG 0.611775 2:-82659359 MsG0280011341.01.T01:CDS
ATCTAAAACTGTGAAACCGA+AGG 0.611948 2:-82657505 MsG0280011341.01.T01:CDS
GAAGAAGGAAGAACCTGTTG+AGG 0.612004 2:-82657187 MsG0280011341.01.T01:CDS
AAGTCCAGCAAAGAAATCTA+CGG 0.612501 2:-82659937 MsG0280011341.01.T01:intron
GTGTGTAAGCAGATGGCAAA+GGG 0.623184 2:-82660868 None:intergenic
TGTGTGTAAGCAGATGGCAA+AGG 0.632316 2:-82660869 None:intergenic
GTTGCCAAACAAGAAAAGGA+AGG 0.644080 2:-82657280 MsG0280011341.01.T01:CDS
TCAGTTACGCTTACGCTGCG+AGG 0.662896 2:-82659242 MsG0280011341.01.T01:intron
TCAAGGTCAAGTTCGTCATG+GGG 0.675645 2:-82659342 MsG0280011341.01.T01:CDS
GGCCAGAGAACAAAGACTTG+AGG 0.687082 2:-82660815 MsG0280011341.01.T01:CDS
CAGACCTTCCACAATTGCAG+AGG 0.690855 2:-82659374 MsG0280011341.01.T01:CDS
CTTACCTCTTCAGCATACGA+AGG 0.705335 2:+82659752 None:intergenic
CCTCGAAACAGTGAAACCAG+AGG 0.741911 2:-82657313 MsG0280011341.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAATATAAATTTATTGA+AGG - Chr2:82660009-82660028 MsG0280011341.01.T01:intron 10.0%
!! TTAAAATCTTCAAATTTAAA+AGG - Chr2:82659568-82659587 MsG0280011341.01.T01:intron 10.0%
!!! GATTTTAAAATATTACAAAA+AGG + Chr2:82659556-82659575 None:intergenic 10.0%
!!! GTTTTTCAATAAATTTATAT+TGG + Chr2:82659966-82659985 None:intergenic 10.0%
!!! TCAAAATAATTAACTTATTT+TGG - Chr2:82659351-82659370 MsG0280011341.01.T01:CDS 10.0%
!! AATTTATTGAAGGTTAATTT+AGG - Chr2:82660019-82660038 MsG0280011341.01.T01:intron 15.0%
!! AGTAGAAAAATATAAATACT+AGG - Chr2:82658336-82658355 MsG0280011341.01.T01:intron 15.0%
!! TTATATATACTACTCAATAT+AGG + Chr2:82657606-82657625 None:intergenic 15.0%
!! TTATATATTCCATTATACAA+AGG + Chr2:82658297-82658316 None:intergenic 15.0%
!!! AAACTTGCAATTTTTTTATT+TGG - Chr2:82658023-82658042 MsG0280011341.01.T01:intron 15.0%
!!! ATATTATCTTTATTTTGTCA+GGG - Chr2:82658990-82659009 MsG0280011341.01.T01:intron 15.0%
!!! TATATTATCTTTATTTTGTC+AGG - Chr2:82658989-82659008 MsG0280011341.01.T01:intron 15.0%
!! ATATAAATACTAGGAATATG+TGG - Chr2:82658345-82658364 MsG0280011341.01.T01:intron 20.0%
!! ATATATAAAGCTAGTATGAA+TGG - Chr2:82658309-82658328 MsG0280011341.01.T01:intron 20.0%
!! ATATTTGAATTCAAGAATCA+AGG + Chr2:82658463-82658482 None:intergenic 20.0%
!! ATTTGAAAATATAGATGTAG+AGG - Chr2:82660341-82660360 MsG0280011341.01.T01:intron 20.0%
!! ATTTGCATTGAAACATAAAT+TGG - Chr2:82659145-82659164 MsG0280011341.01.T01:CDS 20.0%
!! TAAGATTATCTTAAACAAAG+TGG + Chr2:82657174-82657193 None:intergenic 20.0%
!! TATTTCACTTTATTACAGTT+TGG - Chr2:82658537-82658556 MsG0280011341.01.T01:intron 20.0%
!! TCATTTATTTACCTTAATCA+TGG - Chr2:82657205-82657224 MsG0280011341.01.T01:CDS 20.0%
!! TTTGATATATACTACTCAAT+CGG + Chr2:82657428-82657447 None:intergenic 20.0%
!!! AAAAACTTGTTCTATAAGAA+AGG - Chr2:82659980-82659999 MsG0280011341.01.T01:CDS 20.0%
!!! AAATCAAGGTTTTTAAATAG+TGG - Chr2:82657283-82657302 MsG0280011341.01.T01:CDS 20.0%
!!! AGATGATAAATTTGTTTTAG+AGG - Chr2:82659052-82659071 MsG0280011341.01.T01:intron 20.0%
!!! ATTTTGAAAAAACTAAACTG+TGG - Chr2:82659391-82659410 MsG0280011341.01.T01:intron 20.0%
!!! TTTAGATTTTTTGATTGCTT+TGG + Chr2:82660418-82660437 None:intergenic 20.0%
! AAAGAAAACTAGAATGCAAA+AGG - Chr2:82660461-82660480 MsG0280011341.01.T01:intron 25.0%
! AAAGTATGAGAATTTATCTC+TGG - Chr2:82658393-82658412 MsG0280011341.01.T01:intron 25.0%
! AAATTGAAATGTTAGTGACA+TGG - Chr2:82658660-82658679 MsG0280011341.01.T01:intron 25.0%
! AAGAAGAAACTCAATATCAA+AGG + Chr2:82659518-82659537 None:intergenic 25.0%
! AATAATAACTAAAACCAGCT+TGG - Chr2:82659309-82659328 MsG0280011341.01.T01:intron 25.0%
! AATATTCAAGAGTTTCATGT+TGG - Chr2:82657674-82657693 MsG0280011341.01.T01:CDS 25.0%
! ACAAATTTATCATCTGTCTT+TGG + Chr2:82659047-82659066 None:intergenic 25.0%
! ATAAACATCAAAAACCTTGA+TGG - Chr2:82657365-82657384 MsG0280011341.01.T01:CDS 25.0%
! ATTTGCAAACAAAAAACAAG+TGG + Chr2:82660157-82660176 None:intergenic 25.0%
! CCAAAATAGTTGTTATAAGT+AGG - Chr2:82659857-82659876 MsG0280011341.01.T01:intron 25.0%
! TATATTCCATTATACAAAGG+TGG + Chr2:82658294-82658313 None:intergenic 25.0%
! TATGCATTTGTAAAATGCTT+AGG - Chr2:82657244-82657263 MsG0280011341.01.T01:CDS 25.0%
! TGAATATCAAAGTTCATTAG+TGG + Chr2:82659468-82659487 None:intergenic 25.0%
! TGACCAAATTAATTCTTACA+AGG - Chr2:82659634-82659653 MsG0280011341.01.T01:intron 25.0%
! TTCTCATAACAAAAAGCAAA+AGG - Chr2:82660557-82660576 MsG0280011341.01.T01:intron 25.0%
! TTGAAACATAAATTGGATGA+TGG - Chr2:82659152-82659171 MsG0280011341.01.T01:CDS 25.0%
! TTGATATATACTACTCAATC+GGG + Chr2:82657427-82657446 None:intergenic 25.0%
! TTTGCAAACAAAAAACAAGT+GGG + Chr2:82660156-82660175 None:intergenic 25.0%
!! AAGCCTTGTAAGAATTAATT+TGG + Chr2:82659640-82659659 None:intergenic 25.0%
!! AATTCTCATACTTTTGTCTT+AGG + Chr2:82658387-82658406 None:intergenic 25.0%
!! ATTCTCATACTTTTGTCTTA+GGG + Chr2:82658386-82658405 None:intergenic 25.0%
!! CCTACTTATAACAACTATTT+TGG + Chr2:82659860-82659879 None:intergenic 25.0%
!! TGATAATAGTTGTGATAATG+AGG - Chr2:82657811-82657830 MsG0280011341.01.T01:intron 25.0%
!! TTTCATGTTGATTGAAATCA+AGG - Chr2:82657269-82657288 MsG0280011341.01.T01:CDS 25.0%
!!! AACTTTTGGAGTTTACTTTT+AGG - Chr2:82659901-82659920 MsG0280011341.01.T01:intron 25.0%
!!! AATTTAAGTTTCTAGTCTTG+AGG - Chr2:82659417-82659436 MsG0280011341.01.T01:intron 25.0%
!!! ACAAGATTAGTCATTGATTT+TGG + Chr2:82658124-82658143 None:intergenic 25.0%
!!! ACCATTTTAGAATTTGAGAA+GGG + Chr2:82659716-82659735 None:intergenic 25.0%
!!! ACTTTTGGAGTTTACTTTTA+GGG - Chr2:82659902-82659921 MsG0280011341.01.T01:intron 25.0%
!!! GTTTTTTCAAAATCAGATCA+TGG + Chr2:82659384-82659403 None:intergenic 25.0%
!!! TAAGTCATGGTTTTAAATTG+TGG - Chr2:82657518-82657537 MsG0280011341.01.T01:CDS 25.0%
!!! TACCATTTTAGAATTTGAGA+AGG + Chr2:82659717-82659736 None:intergenic 25.0%
!!! TACTTTTAGGGTTGAAATTA+TGG - Chr2:82659914-82659933 MsG0280011341.01.T01:intron 25.0%
!!! TTTCATGTTGGTTTATATCA+TGG - Chr2:82657686-82657705 MsG0280011341.01.T01:CDS 25.0%
!!! TTTGTTTTAGAGGATGAAAA+AGG - Chr2:82659062-82659081 MsG0280011341.01.T01:intron 25.0%
!!! TTTTTGTTTGCAAATGTTCT+CGG - Chr2:82660162-82660181 MsG0280011341.01.T01:intron 25.0%
AAAAGAAGAAATCGATGCTT+TGG - Chr2:82660368-82660387 MsG0280011341.01.T01:intron 30.0%
AAAATTCAAGACTTCTGTGT+TGG - Chr2:82657493-82657512 MsG0280011341.01.T01:CDS 30.0%
AAAGAAATAGTTGTCAGATG+TGG - Chr2:82657328-82657347 MsG0280011341.01.T01:CDS 30.0%
AAAGTTTCAAGCCATGATTA+AGG + Chr2:82657219-82657238 None:intergenic 30.0%
AAATGTTAGTGACATGGTTA+TGG - Chr2:82658666-82658685 MsG0280011341.01.T01:intron 30.0%
AATGTTAGTGACATGGTTAT+GGG - Chr2:82658667-82658686 MsG0280011341.01.T01:intron 30.0%
ACATTGAAGAATGAACAACA+AGG + Chr2:82658914-82658933 None:intergenic 30.0%
ACTTCCATATGAATTCTGTT+AGG + Chr2:82660273-82660292 None:intergenic 30.0%
ATCAATGACTAATCTTGTTC+TGG - Chr2:82658126-82658145 MsG0280011341.01.T01:intron 30.0%
ATCTTACCACCTTTGTATAA+TGG - Chr2:82658285-82658304 MsG0280011341.01.T01:intron 30.0%
ATGATAGTTTGAACTTTGCA+AGG + Chr2:82658218-82658237 None:intergenic 30.0%
CAACTCTCTTATAACTTCAA+AGG - Chr2:82659242-82659261 MsG0280011341.01.T01:intron 30.0%
CAAGTTAGTACCATTACAAA+TGG + Chr2:82659772-82659791 None:intergenic 30.0%
CATTGAAATAGAATCCAACT+AGG + Chr2:82657790-82657809 None:intergenic 30.0%
CTAAATCCTTGAGAACAAAA+GGG + Chr2:82657942-82657961 None:intergenic 30.0%
GACATATCACTAGTAAATGT+GGG + Chr2:82659838-82659857 None:intergenic 30.0%
GATTTAACAGTTTCAGACTT+TGG + Chr2:82660510-82660529 None:intergenic 30.0%
TAAAACTATACTAGTGGTGA+GGG + Chr2:82657871-82657890 None:intergenic 30.0%
TAAATCCTTGAGAACAAAAG+GGG + Chr2:82657941-82657960 None:intergenic 30.0%
TAACGCTAAAACTATACTAG+TGG + Chr2:82657877-82657896 None:intergenic 30.0%
TGAGTTTCTTCTTAAGTTCA+AGG - Chr2:82659525-82659544 MsG0280011341.01.T01:intron 30.0%
TTAAATCAGAGGAAACTTCT+AGG - Chr2:82660523-82660542 MsG0280011341.01.T01:intron 30.0%
TTGGTGAAAATGTTAGTTGA+TGG - Chr2:82659328-82659347 MsG0280011341.01.T01:intron 30.0%
TTTACCTTGCCCATAAAAAT+GGG - Chr2:82659102-82659121 MsG0280011341.01.T01:CDS 30.0%
TTTCTGCAAAACTATCATGT+TGG + Chr2:82658499-82658518 None:intergenic 30.0%
! ACCCTTCTCAAATTCTAAAA+TGG - Chr2:82659712-82659731 MsG0280011341.01.T01:intron 30.0%
! AGGTAGTTTGCATAAATCTA+TGG + Chr2:82657844-82657863 None:intergenic 30.0%
! ATAACCCGCAAAAACATTTT+AGG + Chr2:82657396-82657415 None:intergenic 30.0%
! ATGATTTTGTAACACAGTTG+AGG + Chr2:82657740-82657759 None:intergenic 30.0%
! CCTCTCTTTCTAAAAAACTT+TGG + Chr2:82660855-82660874 None:intergenic 30.0%
! GGTAGTTTGCATAAATCTAT+GGG + Chr2:82657843-82657862 None:intergenic 30.0%
! TGATGCAGTAGTTTTTGAAT+TGG - Chr2:82659175-82659194 MsG0280011341.01.T01:CDS 30.0%
! TGCAATTTCTGTCAATGTTT+TGG + Chr2:82657980-82657999 None:intergenic 30.0%
! TGTATCTGAGAAGATTCTTT+TGG - Chr2:82660692-82660711 MsG0280011341.01.T01:intron 30.0%
! TTTTACACAGACATTTACAC+TGG + Chr2:82657656-82657675 None:intergenic 30.0%
! TTTTCCTATGTGCTAACTTT+TGG - Chr2:82659887-82659906 MsG0280011341.01.T01:intron 30.0%
!! AACAAAAGCATTTATATGCC+AGG - Chr2:82660224-82660243 MsG0280011341.01.T01:intron 30.0%
!! AGCATTGACTTGATAAATGA+TGG + Chr2:82658813-82658832 None:intergenic 30.0%
!! CTCATGTTTATAGCTGTTTT+TGG - Chr2:82658838-82658857 MsG0280011341.01.T01:CDS 30.0%
!! CTTTGAAGTTATAAGAGAGT+TGG + Chr2:82659244-82659263 None:intergenic 30.0%
!!! AATTTATCTCTGGTTTTTGC+AGG - Chr2:82658403-82658422 MsG0280011341.01.T01:intron 30.0%
!!! CCAAAGTTTTTTAGAAAGAG+AGG - Chr2:82660852-82660871 MsG0280011341.01.T01:CDS 30.0%
!!! TGTTTATAGCTGTTTTTGGT+TGG - Chr2:82658842-82658861 MsG0280011341.01.T01:CDS 30.0%
AACAGCTATAAACATGAGAC+CGG + Chr2:82658836-82658855 None:intergenic 35.0%
AACTCCAAAAGTTAGCACAT+AGG + Chr2:82659894-82659913 None:intergenic 35.0%
AAGAAAAGGAAGGCAAAAGA+AGG - Chr2:82660666-82660685 MsG0280011341.01.T01:intron 35.0%
AAGAATCAAGGATTTCACAG+AGG + Chr2:82658451-82658470 None:intergenic 35.0%
AAGTCCAGCAAAGAAATCTA+CGG - Chr2:82657999-82658018 MsG0280011341.01.T01:intron 35.0%
AGCTAAGTCAAACCAAATGT+TGG + Chr2:82658066-82658085 None:intergenic 35.0%
ATGTTCCTCACAAAATCTAC+TGG + Chr2:82659021-82659040 None:intergenic 35.0%
CAAAGTTGCCAAACAAGAAA+AGG - Chr2:82660652-82660671 MsG0280011341.01.T01:intron 35.0%
CATATAAAACCTTGACGTTG+CGG - Chr2:82657757-82657776 MsG0280011341.01.T01:intron 35.0%
CATTTATCAAGTCAATGCTC+CGG - Chr2:82658814-82658833 MsG0280011341.01.T01:CDS 35.0%
CCTAAATCCTTGAGAACAAA+AGG + Chr2:82657943-82657962 None:intergenic 35.0%
CTAAAACTATACTAGTGGTG+AGG + Chr2:82657872-82657891 None:intergenic 35.0%
CTCTGTAAAGAACCAACATT+TGG - Chr2:82658051-82658070 MsG0280011341.01.T01:intron 35.0%
GGAAGAGGAATACTTTCAAA+TGG - Chr2:82659438-82659457 MsG0280011341.01.T01:intron 35.0%
GGACATATCACTAGTAAATG+TGG + Chr2:82659839-82659858 None:intergenic 35.0%
GGCACTAACTACTTAGAATT+TGG + Chr2:82659945-82659964 None:intergenic 35.0%
GTGTCCTAACAGAATTCATA+TGG - Chr2:82660266-82660285 MsG0280011341.01.T01:intron 35.0%
GTTAGTACCATTACAAATGG+TGG + Chr2:82659769-82659788 None:intergenic 35.0%
GTTTACCTTGCCCATAAAAA+TGG - Chr2:82659101-82659120 MsG0280011341.01.T01:CDS 35.0%
TAAGAGAGTTGGATGAGAAT+CGG + Chr2:82659233-82659252 None:intergenic 35.0%
TACCAGTAACAAGTATGAAG+CGG - Chr2:82657100-82657119 MsG0280011341.01.T01:CDS 35.0%
TCAAGAAAGAAAACGTGCTT+GGG - Chr2:82658746-82658765 MsG0280011341.01.T01:CDS 35.0%
TCGAAGACTGCAAATTGAAT+TGG + Chr2:82658788-82658807 None:intergenic 35.0%
TCTATCACGACAGATTGATT+GGG + Chr2:82659286-82659305 None:intergenic 35.0%
TGTTCCTCACAAAATCTACT+GGG + Chr2:82659020-82659039 None:intergenic 35.0%
TGTTTATATTCGAGACCCAA+TGG - Chr2:82660079-82660098 MsG0280011341.01.T01:intron 35.0%
TTTACCGTAGATTTCTTTGC+TGG + Chr2:82658006-82658025 None:intergenic 35.0%
! AACTAACATTTTCACCAAGC+TGG + Chr2:82659326-82659345 None:intergenic 35.0%
! AATATCCCCTTTTGTTCTCA+AGG - Chr2:82657933-82657952 MsG0280011341.01.T01:intron 35.0%
! ATCTAAAACTGTGAAACCGA+AGG - Chr2:82660431-82660450 MsG0280011341.01.T01:intron 35.0%
! CCTTTTGTTCTCAAGGATTT+AGG - Chr2:82657940-82657959 MsG0280011341.01.T01:intron 35.0%
! GTCTGAAACTGTTAAATCAG+AGG - Chr2:82660512-82660531 MsG0280011341.01.T01:intron 35.0%
! GTTTTCTTTGTAGCTTCCTT+CGG + Chr2:82660450-82660469 None:intergenic 35.0%
! TTCATACTTGTTACTGGTAG+TGG + Chr2:82657099-82657118 None:intergenic 35.0%
! TTTGCCTTCCTTTTCTTGTT+TGG + Chr2:82660663-82660682 None:intergenic 35.0%
!! AAAAGCATTTATATGCCAGG+TGG - Chr2:82660227-82660246 MsG0280011341.01.T01:intron 35.0%
!! ACCACTAAGCCCATTTTTAT+GGG + Chr2:82659114-82659133 None:intergenic 35.0%
!! CGTGACCTAAAATGTTTTTG+CGG - Chr2:82657388-82657407 MsG0280011341.01.T01:CDS 35.0%
!! GTGACCTAAAATGTTTTTGC+GGG - Chr2:82657389-82657408 MsG0280011341.01.T01:CDS 35.0%
!! TTCTGTGTTGGTTTAAGTCA+TGG - Chr2:82657505-82657524 MsG0280011341.01.T01:CDS 35.0%
!!! TATAGCTGTTTTTGGTTGGT+AGG - Chr2:82658846-82658865 MsG0280011341.01.T01:CDS 35.0%
!!! TCTCATGTGCTAGTTTTTGT+GGG - Chr2:82659680-82659699 MsG0280011341.01.T01:intron 35.0%
AAACAAAAAACAAGTGGGCC+TGG + Chr2:82660151-82660170 None:intergenic 40.0%
AAACTAGCACATGAGACAAG+AGG + Chr2:82659676-82659695 None:intergenic 40.0%
AAAGCAAGCACATACTCCAT+TGG + Chr2:82660098-82660117 None:intergenic 40.0%
AAGCAAGCACATACTCCATT+GGG + Chr2:82660097-82660116 None:intergenic 40.0%
ACCTGCAGTAATGTATTGTC+AGG + Chr2:82660306-82660325 None:intergenic 40.0%
ACGATTCTGCACAGAGAAAT+AGG + Chr2:82658092-82658111 None:intergenic 40.0%
AGAAGAAATCGATGCTTTGG+TGG - Chr2:82660371-82660390 MsG0280011341.01.T01:intron 40.0%
ATACGAAGGAACTGTGTTTC+TGG + Chr2:82658173-82658192 None:intergenic 40.0%
ATAGAATCCAACTAGGATCG+TGG + Chr2:82657783-82657802 None:intergenic 40.0%
ATATCATCATTCGATCCACC+TGG + Chr2:82660245-82660264 None:intergenic 40.0%
CAACAAGGTTAACAATGTGC+AGG + Chr2:82658899-82658918 None:intergenic 40.0%
CGATTCTGCACAGAGAAATA+GGG + Chr2:82658091-82658110 None:intergenic 40.0%
CTCAAGAAAGAAAACGTGCT+TGG - Chr2:82658745-82658764 MsG0280011341.01.T01:CDS 40.0%
GACTTGAGGAAAACAAGAAG+AGG - Chr2:82657135-82657154 MsG0280011341.01.T01:CDS 40.0%
GGAAAACAAGAAGAGGTTTG+AGG - Chr2:82657142-82657161 MsG0280011341.01.T01:CDS 40.0%
GGTTGAAGCAGCAAGATTTA+AGG - Chr2:82659196-82659215 MsG0280011341.01.T01:CDS 40.0%
GTCTATCACGACAGATTGAT+TGG + Chr2:82659287-82659306 None:intergenic 40.0%
GTTGCCAAACAAGAAAAGGA+AGG - Chr2:82660656-82660675 MsG0280011341.01.T01:intron 40.0%
TACTGCAATTGAGCCAAAAG+AGG - Chr2:82660593-82660612 MsG0280011341.01.T01:intron 40.0%
TCCTGACAATACATTACTGC+AGG - Chr2:82660302-82660321 MsG0280011341.01.T01:intron 40.0%
TGTCTTGTCTTGAGTGTGAA+AGG - Chr2:82659810-82659829 MsG0280011341.01.T01:CDS 40.0%
TTCCTCAAGTCTTTGTTCTC+TGG + Chr2:82657126-82657145 None:intergenic 40.0%
! CATAAAAATGGGCTTAGTGG+TGG - Chr2:82659113-82659132 MsG0280011341.01.T01:CDS 40.0%
! GAAGACTGACTTAGAGAAGA+AGG - Chr2:82660734-82660753 MsG0280011341.01.T01:intron 40.0%
! GCTACTTTGATTTCATCCAG+TGG + Chr2:82658720-82658739 None:intergenic 40.0%
! TCTTCCCAGTAGATTTTGTG+AGG - Chr2:82659013-82659032 MsG0280011341.01.T01:intron 40.0%
!! AGTTTCTAGTCTTGAGGAAG+AGG - Chr2:82659423-82659442 MsG0280011341.01.T01:intron 40.0%
!! CACCACTAAGCCCATTTTTA+TGG + Chr2:82659115-82659134 None:intergenic 40.0%
!! CTAATCTTGTTCTGGAACCT+AGG - Chr2:82658134-82658153 MsG0280011341.01.T01:intron 40.0%
!! GCAATGTTCTCTAAAACTGC+AGG - Chr2:82660125-82660144 MsG0280011341.01.T01:intron 40.0%
!! TAAGCCCATTTTTATGGGCA+AGG + Chr2:82659109-82659128 None:intergenic 40.0%
!!! GTCTCATGTGCTAGTTTTTG+TGG - Chr2:82659679-82659698 MsG0280011341.01.T01:intron 40.0%
AACCTGCTGCAGAAAAACCT+CGG - Chr2:82660817-82660836 MsG0280011341.01.T01:CDS 45.0%
AAGAAAACGTGCTTGGGATG+CGG - Chr2:82658752-82658771 MsG0280011341.01.T01:CDS 45.0%
AGCACATGAGACAAGAGGTA+AGG + Chr2:82659671-82659690 None:intergenic 45.0%
AGTTCCTTCGTATGCTGAAG+AGG - Chr2:82658180-82658199 MsG0280011341.01.T01:intron 45.0%
ATCGATGCTTTGGTGGAAGA+CGG - Chr2:82660378-82660397 MsG0280011341.01.T01:intron 45.0%
CACACTCAAGACAAGACATC+TGG + Chr2:82659808-82659827 None:intergenic 45.0%
CTTACCTCTTCAGCATACGA+AGG + Chr2:82658187-82658206 None:intergenic 45.0%
GAAGAAGGAAGAACCTGTTG+AGG - Chr2:82660749-82660768 MsG0280011341.01.T01:intron 45.0%
GGTCATGTCTCTAACTGATG+TGG + Chr2:82659619-82659638 None:intergenic 45.0%
GTCAAGGTCAAGTTCGTCAT+GGG - Chr2:82658593-82658612 MsG0280011341.01.T01:intron 45.0%
TCAAGGTCAAGTTCGTCATG+GGG - Chr2:82658594-82658613 MsG0280011341.01.T01:intron 45.0%
TCGACATCAACATCCTCAAC+AGG + Chr2:82660765-82660784 None:intergenic 45.0%
TCGTATGCTGAAGAGGTAAG+CGG - Chr2:82658187-82658206 MsG0280011341.01.T01:intron 45.0%
TGCTGAGCCACCATTTGTAA+TGG - Chr2:82659759-82659778 MsG0280011341.01.T01:CDS 45.0%
! ACAAGACATCTGGAGCATGA+AGG + Chr2:82659798-82659817 None:intergenic 45.0%
! GCCCATAAAAATGGGCTTAG+TGG - Chr2:82659110-82659129 MsG0280011341.01.T01:CDS 45.0%
! TTTTGCAGGCTAGTGTTGTG+TGG - Chr2:82658417-82658436 MsG0280011341.01.T01:intron 45.0%
!! CATTTTAGGTCACGCCATCA+AGG + Chr2:82657382-82657401 None:intergenic 45.0%
!! TTTGGAGCTCGAATTTTCCG+AGG + Chr2:82660837-82660856 None:intergenic 45.0%
!!! GTGCTAGTTTTTGTGGGTTC+AGG - Chr2:82659686-82659705 MsG0280011341.01.T01:intron 45.0%
!! AAATAAAGATAATATATATT+AGG + Chr2:82658985-82659004 None:intergenic 5.0%
ACCTCCTCTGCAATTGTGGA+AGG + Chr2:82658569-82658588 None:intergenic 50.0%
ACCTTCCACAATTGCAGAGG+AGG - Chr2:82658565-82658584 MsG0280011341.01.T01:intron 50.0%
ATACTAGTGGTGAGGGACAC+AGG + Chr2:82657864-82657883 None:intergenic 50.0%
CACAATTGCAGAGGAGGTCA+AGG - Chr2:82658571-82658590 MsG0280011341.01.T01:intron 50.0%
CAGACCTTCCACAATTGCAG+AGG - Chr2:82658562-82658581 MsG0280011341.01.T01:intron 50.0%
CCTCGAAACAGTGAAACCAG+AGG - Chr2:82660623-82660642 MsG0280011341.01.T01:intron 50.0%
CTTGACCTCCTCTGCAATTG+TGG + Chr2:82658573-82658592 None:intergenic 50.0%
GGCCAGAGAACAAAGACTTG+AGG - Chr2:82657121-82657140 MsG0280011341.01.T01:CDS 50.0%
GGTCAAGGTCAAGTTCGTCA+TGG - Chr2:82658592-82658611 MsG0280011341.01.T01:intron 50.0%
GTTGTCAACTGTGGTTGTCG+TGG - Chr2:82657545-82657564 MsG0280011341.01.T01:CDS 50.0%
TGTGGTCGTGTTGTCAACTG+TGG - Chr2:82657536-82657555 MsG0280011341.01.T01:CDS 50.0%
! AAAATGGGCTTAGTGGTGGC+TGG - Chr2:82659117-82659136 MsG0280011341.01.T01:CDS 50.0%
! CCTCTGGTTTCACTGTTTCG+AGG + Chr2:82660626-82660645 None:intergenic 50.0%
! GGCCGCTTCATACTTGTTAC+TGG + Chr2:82657105-82657124 None:intergenic 50.0%
! TCGAGGTGTGCATCCTCTTT+TGG + Chr2:82660609-82660628 None:intergenic 50.0%
! TTCCGAGGTTTTTCTGCAGC+AGG + Chr2:82660822-82660841 None:intergenic 50.0%
!! GTTCTCTAAAACTGCAGGCC+AGG - Chr2:82660130-82660149 MsG0280011341.01.T01:intron 50.0%
CAAGTTCGTCATGGGGAAGG+TGG - Chr2:82658601-82658620 MsG0280011341.01.T01:intron 55.0%
GGCAACTTTGTAGCTGCCTC+TGG + Chr2:82660642-82660661 None:intergenic 55.0%
GGTCAAGTTCGTCATGGGGA+AGG - Chr2:82658598-82658617 MsG0280011341.01.T01:intron 55.0%
TCAGTTACGCTTACGCTGCG+AGG - Chr2:82658694-82658713 MsG0280011341.01.T01:intron 55.0%
TGCAGAGGAGGTCAAGGTCA+AGG - Chr2:82658577-82658596 MsG0280011341.01.T01:intron 55.0%
GTTGCGGCCACGATCCTAGT+TGG - Chr2:82657773-82657792 MsG0280011341.01.T01:intron 60.0%
ACGTGCTTGGGATGCGGCAG+AGG - Chr2:82658758-82658777 MsG0280011341.01.T01:CDS 65.0%
GGATCGTGGCCGCAACGTCA+AGG + Chr2:82657769-82657788 None:intergenic 65.0%
GGGCTTAGTGGTGGCTGGAG+AGG - Chr2:82659122-82659141 MsG0280011341.01.T01:CDS 65.0%
!! CTGGCACGAGAAGAGCGCCT+AGG + Chr2:82658154-82658173 None:intergenic 65.0%
CGCTTACGCTGCGAGGCCAC+TGG - Chr2:82658701-82658720 MsG0280011341.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 82657080 82660878 82657080 ID=MsG0280011341.01;Name=MsG0280011341.01
Chr2 mRNA 82657080 82660878 82657080 ID=MsG0280011341.01.T01;Parent=MsG0280011341.01;Name=MsG0280011341.01.T01;_AED=0.43;_eAED=0.46;_QI=0|0.83|0.71|1|1|1|7|0|438
Chr2 exon 82660795 82660878 82660795 ID=MsG0280011341.01.T01:exon:12335;Parent=MsG0280011341.01.T01
Chr2 exon 82659938 82660003 82659938 ID=MsG0280011341.01.T01:exon:12334;Parent=MsG0280011341.01.T01
Chr2 exon 82659757 82659852 82659757 ID=MsG0280011341.01.T01:exon:12333;Parent=MsG0280011341.01.T01
Chr2 exon 82659339 82659403 82659339 ID=MsG0280011341.01.T01:exon:12332;Parent=MsG0280011341.01.T01
Chr2 exon 82659095 82659260 82659095 ID=MsG0280011341.01.T01:exon:12331;Parent=MsG0280011341.01.T01
Chr2 exon 82658741 82658947 82658741 ID=MsG0280011341.01.T01:exon:12330;Parent=MsG0280011341.01.T01
Chr2 exon 82657080 82657712 82657080 ID=MsG0280011341.01.T01:exon:12329;Parent=MsG0280011341.01.T01
Chr2 CDS 82660795 82660878 82660795 ID=MsG0280011341.01.T01:cds;Parent=MsG0280011341.01.T01
Chr2 CDS 82659938 82660003 82659938 ID=MsG0280011341.01.T01:cds;Parent=MsG0280011341.01.T01
Chr2 CDS 82659757 82659852 82659757 ID=MsG0280011341.01.T01:cds;Parent=MsG0280011341.01.T01
Chr2 CDS 82659339 82659403 82659339 ID=MsG0280011341.01.T01:cds;Parent=MsG0280011341.01.T01
Chr2 CDS 82659095 82659260 82659095 ID=MsG0280011341.01.T01:cds;Parent=MsG0280011341.01.T01
Chr2 CDS 82658741 82658947 82658741 ID=MsG0280011341.01.T01:cds;Parent=MsG0280011341.01.T01
Chr2 CDS 82657080 82657712 82657080 ID=MsG0280011341.01.T01:cds;Parent=MsG0280011341.01.T01
Gene Sequence

>MsG0280011341.01.T01

ATGGCAAAGGGTTGTTCCACTACCAGTAACAAGTATGAAGCGGCCAGAGAACAAAGACTTGAGGAAAACAAGAAGAGGTTTGAGGATTTAGGAATTTCAAAAATTTCCAAAACATTGACAGAAATTGCAAGTCCAGCAAAGAAATCTACGAATCGTCGTTTCAAACCAAAATCAATGACTAATCTTGTTCTGGAACCTAGGCGCTCTTCTCGTGCCAGAAACACAGTTCCTTCGTATGCTGAAGAGTTTGGCACAGACCTTCCACAATTGCAGAGGAGGTCAAGGTCAAGGTCAAGTTCGTCATGGGGAAGTTACGCTTACGCTGCGAGGCCACTGGATGAAATCAAAGTAGCTACAGCTCAAGAAAGAAAACGTGCTTGGGATGCGGCAGAGGCACTCCAATTCAATTTGCAGTCTTCGAATCCATCATTTATCAAGTCAATGCTCCGGTCTCATGTTTATAGCTGTTTTTGGTTGGGTCTTCCCAGTAGATTTTGTGAGGAACATCTTCCAAAGACAGATGATAAATTTGTTTTAGAGGATGAAAAAGGCGCAGAATATGATGCTGTTTACCTTGCCCATAAAAATGGGCTTAGTGGTGGCTGGAGAGGATTTGCATTGAAACATAAATTGGATGATGGTGATGCAGTAGTTTTTGAATTGGTTGAAGCAGCAAGATTTAAGGTGGATCGAATGATGATATCGTGTCCTAACAGAATTCATATGGAAGTAAATAATAATCCTGACAATACATTACTGCAGGTTTATATTGTTAGAGCATTTGAAAATATAGATGTAGAGGAAGAAAAAGAAGAAATCGATGCTTTGGTGGAAGACGGAAATATGCAAACATCCAAAGCAATCAAAAAATCTAAAACTGTGAAACCGAAGGAAGCTACAAAGAAAACTAGAATGCAAAAGGTATCTAAAGTACTTACACTTGAGCCAAAGTCTGAAACTGTTAAATCAGAGGAAACTTCTAGGAAAACAAGATCTTCTCATAACAAAAAGCAAAAGGTATCTGATGTATCTACTGCAATTGAGCCAAAAGAGGATGCACACCTCGAAACAGTGAAACCAGAGGCAGCTACAAAGTTGCCAAACAAGAAAAGGAAGGCAAAAGAAGGTGATGTATCTGAGAAGATTCTTTTGGAAGATAATGCTAAAGCAATGAAGACTGACTTAGAGAAGAAGGAAGAACCTGTTGAGGATGTTGATGTCGAGCTAAAGATTAAGCTAGATGATAAAGCAAGCAAACCTGCTGCAGAAAAACCTCGGAAAATTCGAGCTCCAAAGTTTTTTAGAAAGAGAGGTTAG

Protein sequence

>MsG0280011341.01.T01

MAKGCSTTSNKYEAAREQRLEENKKRFEDLGISKISKTLTEIASPAKKSTNRRFKPKSMTNLVLEPRRSSRARNTVPSYAEEFGTDLPQLQRRSRSRSSSSWGSYAYAARPLDEIKVATAQERKRAWDAAEALQFNLQSSNPSFIKSMLRSHVYSCFWLGLPSRFCEEHLPKTDDKFVLEDEKGAEYDAVYLAHKNGLSGGWRGFALKHKLDDGDAVVFELVEAARFKVDRMMISCPNRIHMEVNNNPDNTLLQVYIVRAFENIDVEEEKEEIDALVEDGNMQTSKAIKKSKTVKPKEATKKTRMQKVSKVLTLEPKSETVKSEETSRKTRSSHNKKQKVSDVSTAIEPKEDAHLETVKPEAATKLPNKKRKAKEGDVSEKILLEDNAKAMKTDLEKKEEPVEDVDVELKIKLDDKASKPAAEKPRKIRAPKFFRKRG*