AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0011540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0011540 MtrunA17_Chr1g0160041 98.135 697 12 1 1 697 1 696 0.0 1402
Msa0011540 MtrunA17_Chr3g0124631 73.429 700 179 3 1 696 1 697 0.0 1067
Msa0011540 MtrunA17_Chr3g0120731 62.500 696 254 4 5 696 35 727 0.0 895
Msa0011540 MtrunA17_Chr1g0205711 34.206 649 375 11 57 696 80 685 1.17e-116 365
Msa0011540 MtrunA17_Chr1g0194371 33.539 647 382 14 62 697 46 655 3.33e-105 335
Msa0011540 MtrunA17_Chr5g0396691 33.384 653 386 15 56 697 42 656 6.18e-101 323
Msa0011540 MtrunA17_Chr5g0396711 32.925 653 389 15 56 697 42 656 4.38e-98 316
Msa0011540 MtrunA17_Chr4g0034181 32.290 607 368 15 104 695 73 651 3.91e-96 310
Msa0011540 MtrunA17_Chr8g0388081 31.639 610 374 11 104 697 13 595 3.08e-94 304
Msa0011540 MtrunA17_Chr7g0270221 32.198 646 344 15 57 688 41 606 4.05e-94 305
Msa0011540 MtrunA17_Chr1g0162621 31.097 611 371 15 104 695 74 653 2.69e-88 290
Msa0011540 MtrunA17_Chr3g0121931 26.308 650 379 17 109 695 107 719 2.00e-45 173
Msa0011540 MtrunA17_Chr3g0121951 26.168 642 387 21 109 695 105 714 1.12e-41 162
Msa0011540 MtrunA17_Chr8g0377991 25.811 647 388 19 109 695 109 723 9.49e-38 150
Msa0011540 MtrunA17_Chr4g0039791 30.058 346 160 15 251 582 204 481 1.42e-23 105
Msa0011540 MtrunA17_Chr5g0409791 26.680 491 254 23 118 582 78 488 1.43e-23 105
Msa0011540 MtrunA17_Chr5g0409771 28.571 350 170 16 251 587 198 480 1.68e-21 99.0
Msa0011540 MtrunA17_Chr4g0072561 24.956 565 329 16 107 651 57 546 1.04e-19 93.6
Msa0011540 MtrunA17_Chr1g0157401 27.941 340 177 13 251 584 205 482 1.87e-18 89.4
Msa0011540 MtrunA17_Chr8g0353341 26.479 355 190 11 235 584 197 485 2.97e-17 85.5
Msa0011540 MtrunA17_Chr6g0471921 26.163 344 186 10 240 579 153 432 4.09e-16 82.0
Msa0011540 MtrunA17_Chr5g0433231 34.161 161 89 5 444 593 322 476 3.86e-14 75.9
Msa0011540 MtrunA17_Chr5g0395431 33.714 175 90 8 422 584 349 509 4.26e-14 75.9
Msa0011540 MtrunA17_Chr4g0028411 30.841 214 122 9 422 620 307 509 6.43e-14 75.1
Msa0011540 MtrunA17_Chr2g0327341 32.558 172 93 9 422 584 304 461 8.67e-14 74.7
Msa0011540 MtrunA17_Chr1g0180541 28.241 216 127 9 422 620 311 515 9.22e-14 74.7
Msa0011540 MtrunA17_Chr1g0180551 32.317 164 98 6 428 586 390 545 1.94e-12 70.5
Msa0011540 MtrunA17_Chr5g0433241 48.193 83 37 3 503 585 391 467 2.39e-12 70.1
Msa0011540 MtrunA17_Chr3g0116271 33.889 180 91 9 422 585 323 490 8.21e-12 68.6
Msa0011540 MtrunA17_Chr3g0109731 32.948 173 94 6 425 584 306 469 9.99e-12 68.2
Msa0011540 MtrunA17_Chr5g0433221 40.952 105 56 3 489 593 378 476 1.04e-11 68.2
Msa0011540 MtrunA17_Chr6g0471311 34.161 161 89 6 444 593 324 478 1.05e-11 68.2
Msa0011540 MtrunA17_Chr1g0197391 29.940 167 105 6 422 584 330 488 2.92e-11 66.6
Msa0011540 MtrunA17_Chr4g0000461 34.286 175 95 8 422 587 303 466 9.04e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0011540 AT1G77590.1 71.879 697 189 4 1 696 1 691 0.0 1055
Msa0011540 AT1G77590.2 78.611 547 114 1 150 696 2 545 0.0 913
Msa0011540 AT2G04350.2 62.555 681 247 5 20 696 44 720 0.0 881
Msa0011540 AT2G04350.1 62.555 681 247 5 20 696 44 720 0.0 881
Msa0011540 AT5G27600.1 34.621 647 375 13 57 696 83 688 1.50e-122 381
Msa0011540 AT3G05970.1 34.681 643 378 10 57 695 83 687 4.16e-115 362
Msa0011540 AT2G47240.1 32.428 663 384 15 48 695 39 652 3.37e-97 314
Msa0011540 AT2G47240.2 32.428 663 384 15 48 695 39 652 3.37e-97 314
Msa0011540 AT2G47240.3 32.428 663 384 15 48 695 39 652 3.37e-97 314
Msa0011540 AT2G47240.4 33.169 609 366 12 102 695 11 593 2.07e-96 310
Msa0011540 AT4G11030.1 31.194 670 406 15 40 697 31 657 2.31e-96 311
Msa0011540 AT4G23850.1 31.729 665 397 16 46 697 37 657 1.63e-94 307
Msa0011540 AT1G49430.1 30.971 649 395 14 62 696 49 658 1.76e-94 306
Msa0011540 AT1G64400.1 31.954 604 376 12 104 695 75 655 3.34e-94 306
Msa0011540 AT1G49430.2 30.629 493 289 14 62 540 49 502 2.46e-62 217
Msa0011540 AT3G23790.1 26.365 641 388 18 109 695 111 721 9.20e-45 171
Msa0011540 AT4G14070.1 25.387 646 379 18 109 696 127 727 1.86e-42 164
Msa0011540 AT4G19010.1 31.443 388 185 19 251 620 205 529 1.91e-28 120
Msa0011540 AT1G20500.1 26.570 414 219 15 251 644 198 546 1.74e-21 99.4
Msa0011540 AT1G20510.1 28.640 419 203 18 229 620 162 511 2.15e-20 95.9
Msa0011540 AT1G20510.2 29.255 376 179 16 229 586 162 468 1.94e-19 92.4
Msa0011540 AT1G65060.1 24.691 486 269 17 110 579 77 481 1.60e-18 90.1
Msa0011540 AT1G65060.2 24.628 471 259 17 110 564 77 467 4.92e-18 88.2
Msa0011540 AT1G20510.3 29.379 354 164 15 229 564 162 447 9.26e-18 87.0
Msa0011540 AT1G51680.1 26.226 469 247 21 207 649 162 557 2.68e-17 86.3
Msa0011540 AT5G16370.1 29.508 366 158 14 251 593 186 474 6.21e-17 85.1
Msa0011540 AT1G51680.3 27.612 402 201 19 207 591 162 490 1.47e-16 84.0
Msa0011540 AT1G51680.2 27.612 402 201 19 207 591 162 490 2.11e-16 83.2
Msa0011540 AT4G05160.1 28.629 248 138 11 422 645 309 541 6.02e-16 82.0
Msa0011540 AT5G16340.1 29.014 355 174 13 251 593 186 474 1.30e-15 80.9
Msa0011540 AT3G48990.1 29.670 273 149 11 421 690 281 513 2.67e-14 76.6
Msa0011540 AT1G75960.1 34.715 193 95 7 418 593 296 474 5.02e-14 75.9
Msa0011540 AT1G21540.1 34.161 161 90 5 444 593 322 477 7.47e-14 75.5
Msa0011540 AT1G20480.1 31.250 208 123 8 425 620 333 532 3.27e-13 73.2
Msa0011540 AT1G77240.1 45.055 91 45 2 503 593 390 475 5.11e-13 72.8
Msa0011540 AT3G21230.1 27.160 243 155 8 422 650 331 565 7.53e-13 72.0
Msa0011540 AT3G21240.1 27.711 249 145 11 422 649 316 550 1.06e-12 71.6
Msa0011540 AT1G21530.1 41.758 91 48 2 503 593 387 472 2.52e-12 70.5
Msa0011540 AT1G21530.2 41.758 91 48 2 503 593 389 474 2.55e-12 70.5
Msa0011540 AT3G21240.2 31.319 182 99 9 422 591 316 483 1.11e-11 68.2
Msa0011540 AT3G21240.3 31.319 182 99 9 422 591 316 483 1.11e-11 68.2
Msa0011540 AT3G21230.3 31.176 170 104 6 422 586 331 492 1.36e-11 68.2
Msa0011540 AT3G21230.2 31.176 170 104 6 422 586 331 492 1.56e-11 67.8

Find 203 sgRNAs with CRISPR-Local

Find 599 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGGCGGTGCTCCCCTTTC+TGG 0.196224 1_1:-17408256 Msa0011540:CDS
TGTGTTGATGCCTACTTTAT+TGG 0.196852 1_1:-17408931 Msa0011540:CDS
TCTTCCTTGCTCATTTATTA+AGG 0.207102 1_1:-17407042 Msa0011540:intron
TGTTCCAAAACTTGAGAAAA+AGG 0.224626 1_1:-17409230 Msa0011540:CDS
TGAATGGTTCCTTGCTCTTC+AGG 0.232308 1_1:-17410802 Msa0011540:intron
TTCTGCTTCAGGGTTGTTTC+AGG 0.236650 1_1:-17410225 Msa0011540:intron
AATCAAGGAATTCCTTATTC+AGG 0.263628 1_1:-17403554 Msa0011540:CDS
AAATTCATGCATCAAATAAC+AGG 0.274932 1_1:-17402642 Msa0011540:three_prime_UTR
GGGGATTGGAGAAGGCTCTC+TGG 0.278772 1_1:-17408339 Msa0011540:CDS
TACTGGAACTCCACGGCGTT+TGG 0.282850 1_1:+17411166 None:intergenic
ACTGGAACTCCACGGCGTTT+GGG 0.294887 1_1:+17411167 None:intergenic
AGGAGGTTGAAAGCAGTTAA+TGG 0.295468 1_1:-17408379 Msa0011540:CDS
TGATCGTCCGCGGAGTTTAC+TGG 0.297128 1_1:+17411149 None:intergenic
GAAGAAGTTACTCAGAAAAT+TGG 0.300791 1_1:+17411291 None:intergenic
GAAAGCAATTTAATTCTTGC+TGG 0.303529 1_1:+17402857 None:intergenic
AGAAATCGTTGATCGTAAAA+AGG 0.325053 1_1:-17404256 Msa0011540:CDS
AGACCATATCCTTGACCTAT+TGG 0.336719 1_1:+17407134 None:intergenic
CCTCGGGGCGAAATTGTAAT+TGG 0.337884 1_1:-17406517 Msa0011540:CDS
TACTCAGAAAATTGGTGTTT+TGG 0.339274 1_1:+17411299 None:intergenic
ATAACTTCAGAAGTTCTTCC+TGG 0.348024 1_1:+17402759 None:intergenic
GCAGTTAATGGAAGCTGGTT+TGG 0.349164 1_1:-17408367 Msa0011540:CDS
TGTAACTATGTATGCATCAT+TGG 0.358738 1_1:-17410188 Msa0011540:CDS
TGCGACTAGGTTGATGAAAA+AGG 0.360471 1_1:-17404333 Msa0011540:intron
TCTGAAGTTATACGCTTCAT+AGG 0.361791 1_1:-17402747 Msa0011540:exon
TCATAGGCTAACTAGTTGTT+TGG 0.364550 1_1:-17402731 Msa0011540:exon
TGCTAGTGGTTTGGCTGTGT+TGG 0.364775 1_1:-17410871 Msa0011540:CDS
TTAGTTAAATATCCACCTTC+AGG 0.376720 1_1:+17406553 None:intergenic
GGGATTGGAGAAGGCTCTCT+GGG 0.383295 1_1:-17408338 Msa0011540:CDS
ATGGAAGCTGGTTTGGAGCC+TGG 0.384214 1_1:-17408360 Msa0011540:CDS
ATGGAAAGGATGAGAGGGTT+GGG 0.386145 1_1:-17410845 Msa0011540:CDS
GTTGGGATACCTATAGGATA+TGG 0.388445 1_1:-17409017 Msa0011540:CDS
AAAACACTTATAAATATTAG+TGG 0.388638 1_1:-17409964 Msa0011540:CDS
CTCAGTCCACATTGGAAGAA+TGG 0.398978 1_1:-17403583 Msa0011540:CDS
GCTAGTGGTTTGGCTGTGTT+GGG 0.401073 1_1:-17410870 Msa0011540:CDS
GATCCATGGACACCCGAGTC+TGG 0.402724 1_1:-17402833 Msa0011540:CDS
TGGAAGCTGGTTTGGAGCCT+GGG 0.403407 1_1:-17408359 Msa0011540:CDS
CAAGTGCCACACAATAACTA+TGG 0.408624 1_1:+17403615 None:intergenic
TGGGGTGGTTAGTGCGGAAC+AGG 0.408992 1_1:+17411186 None:intergenic
GCATGGAGAGTATGTTTCCT+TGG 0.413823 1_1:-17404217 Msa0011540:CDS
GGAAGCAAAGAAAGCACGTT+TGG 0.414955 1_1:-17402894 Msa0011540:CDS
TAATGACTCGCCAATGCCTC+GGG 0.421247 1_1:-17406533 Msa0011540:CDS
ATACCTCAGCTGCAAGTTCA+AGG 0.422076 1_1:+17409173 None:intergenic
CTGCTGAGTATCACCAGAAA+GGG 0.422987 1_1:+17408243 None:intergenic
AAGATAAAGAAAGGAACAAA+GGG 0.428594 1_1:-17408963 Msa0011540:CDS
TCAGTCCACATTGGAAGAAT+GGG 0.429822 1_1:-17403582 Msa0011540:CDS
TTAAATTGCTTTCTGATCCA+TGG 0.429985 1_1:-17402847 Msa0011540:CDS
AGTGGTTGTTTCGAAGGAAA+TGG 0.431521 1_1:-17410994 Msa0011540:CDS
CTGGTTTGGAGCCTGGGGAT+TGG 0.432080 1_1:-17408353 Msa0011540:CDS
TGGAGCCTGGGGATTGGAGA+AGG 0.435820 1_1:-17408347 Msa0011540:CDS
TGTGAAGTTTGCTAGTGGTT+TGG 0.437204 1_1:-17410880 Msa0011540:CDS
AACATTATATTGTCCACATA+GGG 0.443303 1_1:+17403653 None:intergenic
ATGATAACTGCAACATCAGC+TGG 0.443496 1_1:+17409793 None:intergenic
TTGCTGATACTAGGGTTGAA+TGG 0.455217 1_1:-17410818 Msa0011540:CDS
ACAATTTCGCCCCGAGGCAT+TGG 0.456817 1_1:+17406523 None:intergenic
GGCCGTCAGAAAGACTTTCC+AGG 0.457546 1_1:-17402777 Msa0011540:CDS
CGCATCCGTTTCATACTGTC+TGG 0.460106 1_1:-17408274 Msa0011540:CDS
AAAGGAGATCCATATCCTAT+AGG 0.461389 1_1:+17409008 None:intergenic
CATGGAAAGGATGAGAGGGT+TGG 0.461442 1_1:-17410846 Msa0011540:CDS
CATGGAGAGTATGTTTCCTT+GGG 0.466180 1_1:-17404216 Msa0011540:CDS
TGCTTTCAACCTCCTCTCAT+AGG 0.467574 1_1:+17408387 None:intergenic
TTGTTTGGATGTATCTATTG+AGG 0.469486 1_1:-17402716 Msa0011540:three_prime_UTR
GCAGCAGTTGGGATACCTAT+AGG 0.472722 1_1:-17409023 Msa0011540:CDS
ATGTATACAAGTGGAAGTAC+TGG 0.474903 1_1:-17409772 Msa0011540:CDS
CAGTTCATCAATATCTGTCT+TGG 0.475583 1_1:-17408223 Msa0011540:CDS
AGAGGTAAATCAGCATCAAC+AGG 0.476714 1_1:+17409817 None:intergenic
CCATCTGATGCCTCATCTGT+TGG 0.477457 1_1:-17409895 Msa0011540:CDS
AAGTAACCAAGAGTGACATT+TGG 0.478964 1_1:+17406490 None:intergenic
TGAAAGCAGTTAATGGAAGC+TGG 0.480204 1_1:-17408372 Msa0011540:CDS
CTTCTCCGGTGGAGACGGCA+TGG 0.480926 1_1:-17411094 Msa0011540:CDS
GAAGAATGGGCTTCAAATCA+AGG 0.482234 1_1:-17403569 Msa0011540:CDS
CCTTCCCATGCCGTCTCCAC+CGG 0.483070 1_1:+17411089 None:intergenic
GTAACTATGTATGCATCATT+GGG 0.483827 1_1:-17410187 Msa0011540:CDS
CTGGAACTCCACGGCGTTTG+GGG 0.485413 1_1:+17411168 None:intergenic
AACAGGAGAGTTGCGAGGAT+GGG 0.487307 1_1:+17411203 None:intergenic
TAGAATTTGATGGCAGCAGT+TGG 0.491226 1_1:-17409035 Msa0011540:CDS
CCAATGTAGGTGAATGCAAC+GGG 0.492645 1_1:-17408439 Msa0011540:intron
TTGAATTGGGTGAGTATGAA+TGG 0.493545 1_1:-17410932 Msa0011540:CDS
CCTCATCTGTTGGACATGGC+TGG 0.496791 1_1:-17409885 Msa0011540:CDS
GAACAGGAGAGTTGCGAGGA+TGG 0.496821 1_1:+17411202 None:intergenic
CAACATTATATTGTCCACAT+AGG 0.498047 1_1:+17403652 None:intergenic
CGAACACGGTCAAGAATTGC+TGG 0.499967 1_1:+17408900 None:intergenic
AAGCCAGACTCGGGTGTCCA+TGG 0.500048 1_1:+17402830 None:intergenic
GGTGGTCCAAATGTCACTCT+TGG 0.500524 1_1:-17406496 Msa0011540:CDS
TGGTTCTACACTGGTGACAT+AGG 0.500937 1_1:-17404303 Msa0011540:CDS
TTTATGTCACTCATTGAATG+AGG 0.503431 1_1:-17410155 Msa0011540:intron
GAGTATGATGGTGACAATGT+AGG 0.503858 1_1:+17411226 None:intergenic
TTCGCAGATGTTAAGCGACT+TGG 0.504720 1_1:-17409850 Msa0011540:CDS
CTAATGACTCGCCAATGCCT+CGG 0.505287 1_1:-17406534 Msa0011540:CDS
TTAATAAATGAGCAAGGAAG+AGG 0.507013 1_1:+17407044 None:intergenic
GATGTATCTGTGAGGGTCAA+AGG 0.507460 1_1:+17408990 None:intergenic
GTCATTTCCAGTGCTCCAAT+AGG 0.507815 1_1:-17407149 Msa0011540:intron
ATGGAGAAGAGTGGTGGTGA+TGG 0.510454 1_1:-17410975 Msa0011540:CDS
GCTCCAATAGGTCAAGGATA+TGG 0.512887 1_1:-17407137 Msa0011540:CDS
ATTTGCTTCTCCGGTGGAGA+CGG 0.513289 1_1:-17411099 Msa0011540:CDS
AGTATGATGGTGACAATGTA+GGG 0.514432 1_1:+17411227 None:intergenic
AGTTCATCAATATCTGTCTT+GGG 0.515096 1_1:-17408222 Msa0011540:intron
ACAGGAGAGTTGCGAGGATG+GGG 0.517085 1_1:+17411204 None:intergenic
GGCTGTGTTGGGACATGGAA+AGG 0.517980 1_1:-17410859 Msa0011540:CDS
CAAGATAAAGAAAGGAACAA+AGG 0.518432 1_1:-17408964 Msa0011540:CDS
GAACAGAAGATTTGCTTCTC+CGG 0.518555 1_1:-17411108 Msa0011540:CDS
TCCTTTCCATAGTTATTGTG+TGG 0.522402 1_1:-17403621 Msa0011540:CDS
AACAAGAGTGGTTGTTTCGA+AGG 0.522687 1_1:-17411000 Msa0011540:CDS
AGAATTTGATGGCAGCAGTT+GGG 0.524314 1_1:-17409034 Msa0011540:CDS
CTTTAATTAATCATCTGTGA+TGG 0.528944 1_1:+17402585 None:intergenic
GGCGTTTGGGGTGGTTAGTG+CGG 0.529006 1_1:+17411180 None:intergenic
TTATTGTGTGGCACTTGTTG+TGG 0.529744 1_1:-17403609 Msa0011540:CDS
GAGAAGAGTGGTGGTGATGG+TGG 0.532291 1_1:-17410972 Msa0011540:CDS
ACATCAAGCAAGATAAAGAA+AGG 0.535370 1_1:-17408972 Msa0011540:CDS
TTCCTGGAAAGTCTTTCTGA+CGG 0.535805 1_1:+17402775 None:intergenic
GTAAACTCCGCGGACGATCA+AGG 0.536566 1_1:-17411146 Msa0011540:CDS
CGGGGCGAAATTGTAATTGG+TGG 0.536937 1_1:-17406514 Msa0011540:CDS
GATACGTCTGTTGGCCGTGT+TGG 0.538095 1_1:-17407071 Msa0011540:CDS
GGTTTGGCTGTGTTGGGACA+TGG 0.539640 1_1:-17410864 Msa0011540:CDS
CCAACAGATGAGGCATCAGA+TGG 0.541242 1_1:+17409895 None:intergenic
AGCAGTGACTAAGCCAGACT+CGG 0.543106 1_1:+17402820 None:intergenic
ATAGGGAGGTTTCATCAAGA+TGG 0.548115 1_1:-17404285 Msa0011540:CDS
AGAGTATGTTTCCTTGGGAA+AGG 0.550970 1_1:-17404211 Msa0011540:intron
CCGGTGGAGACGGCATGGGA+AGG 0.551535 1_1:-17411089 Msa0011540:CDS
GCATACGGAGAGATTACTGT+TGG 0.551893 1_1:-17411024 Msa0011540:CDS
AATTGTTTGAAGAAGCATGC+AGG 0.551968 1_1:-17411049 Msa0011540:CDS
GAGAGCCTTCTCCAATCCCC+AGG 0.553126 1_1:+17408342 None:intergenic
TTCTCCGGTGGAGACGGCAT+GGG 0.556241 1_1:-17411093 Msa0011540:CDS
TATCCTTGAACTTGCAGCTG+AGG 0.557628 1_1:-17409176 Msa0011540:intron
CACCGCCAGACAGTATGAAA+CGG 0.564677 1_1:+17408269 None:intergenic
GGTTCTACACTGGTGACATA+GGG 0.565337 1_1:-17404302 Msa0011540:CDS
ACTGCTGAGTATCACCAGAA+AGG 0.570535 1_1:+17408242 None:intergenic
CTTGCTTGATGTATCTGTGA+GGG 0.571405 1_1:+17408983 None:intergenic
GGTGCATGCATCGCTAGTAA+AGG 0.572071 1_1:-17403492 Msa0011540:intron
TGCGAGGATGGGGAGTATGA+TGG 0.575752 1_1:+17411214 None:intergenic
TGGAAGTACTGGATTACCTA+AGG 0.576756 1_1:-17409761 Msa0011540:intron
GGTACAGCAGCCAATAAAGT+AGG 0.578659 1_1:+17408921 None:intergenic
CAGAAGATTTGCTTCTCCGG+TGG 0.578672 1_1:-17411105 Msa0011540:CDS
AGTTCAAGGATATGAGCCAT+TGG 0.579034 1_1:+17409187 None:intergenic
TATGTATGCATCATTGGGAG+AGG 0.582563 1_1:-17410182 Msa0011540:CDS
AGAAGCATGCAGGAAGCATA+CGG 0.584187 1_1:-17411039 Msa0011540:CDS
TAGCTAATCGACTGGCCTGA+AGG 0.584227 1_1:-17406568 Msa0011540:CDS
GCAGTTATCATGTATACAAG+TGG 0.584330 1_1:-17409781 Msa0011540:CDS
TCCAGTGCTCCAATAGGTCA+AGG 0.584850 1_1:-17407143 Msa0011540:intron
TTTACCTTAATAAATGAGCA+AGG 0.585073 1_1:+17407038 None:intergenic
GAACTCCACGGCGTTTGGGG+TGG 0.585628 1_1:+17411171 None:intergenic
TGTGGCTTCTCAGTCCACAT+TGG 0.586175 1_1:-17403591 Msa0011540:CDS
GGGACATGGAAAGGATGAGA+GGG 0.587034 1_1:-17410850 Msa0011540:CDS
ATTACTGTTGGGAACAAGAG+TGG 0.589151 1_1:-17411012 Msa0011540:CDS
AATTCATGCATCAAATAACA+GGG 0.591013 1_1:-17402641 Msa0011540:three_prime_UTR
GCCAATGTAGGTGAATGCAA+CGG 0.592102 1_1:-17408440 Msa0011540:intron
AAAATCCGAGCAATTCTTGG+TGG 0.592932 1_1:-17408298 Msa0011540:CDS
GATGCCTCATCTGTTGGACA+TGG 0.593205 1_1:-17409889 Msa0011540:CDS
GGAAGGTGTGAGTACATTGG+CGG 0.594382 1_1:-17411072 Msa0011540:CDS
ACTGCAACATCAGCTGGGAG+AGG 0.595197 1_1:+17409799 None:intergenic
TCGAAGGAAATGGAGAAGAG+TGG 0.595299 1_1:-17410984 Msa0011540:CDS
CTAATCGACTGGCCTGAAGG+TGG 0.598093 1_1:-17406565 Msa0011540:CDS
TCTTATTGTCAGCCCCTATG+TGG 0.599891 1_1:-17403666 Msa0011540:CDS
TGGGACATGGAAAGGATGAG+AGG 0.600615 1_1:-17410851 Msa0011540:CDS
TTAGTATCATACCTTTCCCA+AGG 0.600980 1_1:+17404200 None:intergenic
TTTATTTAGCCTATGAGAGG+AGG 0.601307 1_1:-17408396 Msa0011540:CDS
GGTCTTACAGAGACTTGTGC+TGG 0.601412 1_1:-17407116 Msa0011540:CDS
GGAAGCTGGTTTGGAGCCTG+GGG 0.608440 1_1:-17408358 Msa0011540:CDS
TGCGACCACCAAGAATTGCT+CGG 0.608998 1_1:+17408293 None:intergenic
TGCTCTCAAGCTCAAGAGAG+AGG 0.609631 1_1:-17402798 Msa0011540:CDS
ATTCTTGACCGTGTTCGTGA+TGG 0.610522 1_1:-17408894 Msa0011540:CDS
ATATCTAGCATACTTGCCAA+TGG 0.611559 1_1:-17409203 Msa0011540:CDS
GGAATGAGATGGTTCTACAC+TGG 0.616046 1_1:-17404312 Msa0011540:CDS
GGTGTTGTGAAGTTTGCTAG+TGG 0.616868 1_1:-17410885 Msa0011540:CDS
GCCACACAATAACTATGGAA+AGG 0.617726 1_1:+17403620 None:intergenic
GAGGTCACGACAGTAATTTG+TGG 0.618044 1_1:-17410000 Msa0011540:CDS
GACATTGTTAAACTGCAGCA+TGG 0.618080 1_1:-17404234 Msa0011540:CDS
CTCTAAAGAAGAAAGCATCA+AGG 0.618470 1_1:-17403516 Msa0011540:CDS
CCAGCCATGTCCAACAGATG+AGG 0.620053 1_1:+17409885 None:intergenic
TCTACACTGGTGACATAGGG+AGG 0.620080 1_1:-17404299 Msa0011540:CDS
ATAAATGAGCAAGGAAGAGG+AGG 0.620903 1_1:+17407047 None:intergenic
CTTACAGAGACTTGTGCTGG+TGG 0.623479 1_1:-17407113 Msa0011540:CDS
TGATAACTGCAACATCAGCT+GGG 0.625199 1_1:+17409794 None:intergenic
AAGGAAATGGAGAAGAGTGG+TGG 0.626690 1_1:-17410981 Msa0011540:CDS
ATGGGAAGGTGTGAGTACAT+TGG 0.627410 1_1:-17411075 Msa0011540:CDS
AAGTCGCTTAACATCTGCGA+AGG 0.627775 1_1:+17409852 None:intergenic
CATACGGAGAGATTACTGTT+GGG 0.628004 1_1:-17411023 Msa0011540:CDS
GCAGTGACTAAGCCAGACTC+GGG 0.632844 1_1:+17402821 None:intergenic
CAACAGATGAGGCATCAGAT+GGG 0.637208 1_1:+17409896 None:intergenic
TCTTGCTTGATGTATCTGTG+AGG 0.638108 1_1:+17408982 None:intergenic
TCGTGATGGTGTGTTCAAGA+AGG 0.643418 1_1:-17408880 Msa0011540:intron
TGAAGCCCATTCTTCCAATG+TGG 0.643581 1_1:+17403577 None:intergenic
TGAACACACCATCACGAACA+CGG 0.648292 1_1:+17408886 None:intergenic
ACATTATATTGTCCACATAG+GGG 0.657865 1_1:+17403654 None:intergenic
AGTGAAACGTGTGATATGCA+TGG 0.659671 1_1:-17409929 Msa0011540:CDS
CGGAGTTTACTGGAACTCCA+CGG 0.663555 1_1:+17411159 None:intergenic
CACACCGCCTTGATCGTCCG+CGG 0.663810 1_1:+17411139 None:intergenic
ATCAAGGCGGTGTGACAGTG+CGG 0.666236 1_1:-17411130 Msa0011540:CDS
CCAATTACAATTTCGCCCCG+AGG 0.667096 1_1:+17406517 None:intergenic
AAAGACAAAAGAATCATACA+AGG 0.668435 1_1:-17406455 Msa0011540:intron
AAGGAAGAGGAGGTCCAACA+CGG 0.670202 1_1:+17407057 None:intergenic
ATCCGTTTCATACTGTCTGG+CGG 0.670954 1_1:-17408271 Msa0011540:CDS
GATTACGAACCTGAAGAGCA+AGG 0.678036 1_1:+17410793 None:intergenic
TGCTGAGTATCACCAGAAAG+GGG 0.679172 1_1:+17408244 None:intergenic
ATTCATGCATCAAATAACAG+GGG 0.687599 1_1:-17402640 Msa0011540:three_prime_UTR
TGCGGAACAGGAGAGTTGCG+AGG 0.692879 1_1:+17411198 None:intergenic
ATGTAGGTGAATGCAACGGG+AGG 0.694846 1_1:-17408436 Msa0011540:intron
ACTAACCACCCCAAACGCCG+TGG 0.695175 1_1:-17411176 Msa0011540:CDS
GATAAAGAAAGGAACAAAGG+GGG 0.697638 1_1:-17408961 Msa0011540:CDS
AGATAAAGAAAGGAACAAAG+GGG 0.697836 1_1:-17408962 Msa0011540:CDS
AATGACTCGCCAATGCCTCG+GGG 0.706631 1_1:-17406532 Msa0011540:CDS
TAAAGAAGAAAGCATCAAGG+AGG 0.735856 1_1:-17403513 Msa0011540:CDS
TGGAGTTCCAGTAAACTCCG+CGG 0.773211 1_1:-17411156 Msa0011540:CDS
AACTCCGCGGACGATCAAGG+CGG 0.776940 1_1:-17411143 Msa0011540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAATAATACTATAAAAC+AGG - chr1_1:17403456-17403475 Msa0011540:intron 15.0%
!! AAAACACTTATAAATATTAG+TGG - chr1_1:17403955-17403974 Msa0011540:intron 15.0%
!! ACTAAAATTTGTATATTGAT+AGG + chr1_1:17405728-17405747 None:intergenic 15.0%
!!! AAATTTTAGTATTTTTCGAT+TGG - chr1_1:17405738-17405757 Msa0011540:intron 15.0%
!! GATTATTGAAAAAAAAAATG+AGG - chr1_1:17405773-17405792 Msa0011540:intron 15.0%
!!! ATAATATTTTCCTTTACAAA+AGG + chr1_1:17406653-17406672 None:intergenic 15.0%
!!! TTATGTATATTTTTACTTTG+AGG - chr1_1:17406928-17406947 Msa0011540:intron 15.0%
!! ATAAAGAAAGATAATCAATT+AGG + chr1_1:17407293-17407312 None:intergenic 15.0%
!! AATTATCCTATATAAGAAAA+TGG + chr1_1:17407323-17407342 None:intergenic 15.0%
!!! ATATTTTATAATAGCAGTTA+TGG + chr1_1:17407890-17407909 None:intergenic 15.0%
!!! TTGAAAGTAATTTTTTTGAA+TGG + chr1_1:17408435-17408454 None:intergenic 15.0%
!! CAAAAAAATTACTTTCAAAT+AGG - chr1_1:17408437-17408456 Msa0011540:intron 15.0%
!!! ATATTTTATAATAGCAGTTA+TGG + chr1_1:17407890-17407909 None:intergenic 15.0%
!! TATTATTACTATTATTTGCT+TGG - chr1_1:17409563-17409582 Msa0011540:intron 15.0%
!!! TGATTATTTTTTATAATGGA+TGG + chr1_1:17409891-17409910 None:intergenic 15.0%
!!! AGAGTGATTATTTTTTATAA+TGG + chr1_1:17409895-17409914 None:intergenic 15.0%
!! ATGACATATAAAATTATCAT+AGG - chr1_1:17410617-17410636 Msa0011540:intron 15.0%
!! CTTATTAAATATGTAGTGTT+CGG - chr1_1:17403271-17403290 Msa0011540:intron 20.0%
!! AATAATACTATAAAACAGGA+TGG - chr1_1:17403460-17403479 Msa0011540:intron 20.0%
!!! TTAAATCATTTCAAGTAGTA+AGG + chr1_1:17403533-17403552 None:intergenic 20.0%
!! ATCAATTCAATCAATTTAGA+TGG - chr1_1:17404305-17404324 Msa0011540:CDS 20.0%
!! TTTCAGTATTAGAAATTGTA+GGG + chr1_1:17404533-17404552 None:intergenic 20.0%
!! TACAATTTCTAATACTGAAA+CGG - chr1_1:17404533-17404552 Msa0011540:intron 20.0%
!! AAAACGATAAATAGAAGAAA+CGG + chr1_1:17404581-17404600 None:intergenic 20.0%
!!! TTTTGTTCTTTGATATTGTA+AGG - chr1_1:17405170-17405189 Msa0011540:intron 20.0%
!! TTTGTTCTTTGATATTGTAA+GGG - chr1_1:17405171-17405190 Msa0011540:intron 20.0%
!!! TTTGTCATTTTGTAGATTTA+TGG - chr1_1:17405394-17405413 Msa0011540:intron 20.0%
!!! TTGTCATTTTGTAGATTTAT+GGG - chr1_1:17405395-17405414 Msa0011540:intron 20.0%
!!! GCTAAATAAAACAACTTTTT+GGG + chr1_1:17405513-17405532 None:intergenic 20.0%
!!! CTTTAATCTTGATTTCTTTT+AGG + chr1_1:17405826-17405845 None:intergenic 20.0%
!!! CTTTAATCATGATTTGTTTT+AGG + chr1_1:17405963-17405982 None:intergenic 20.0%
!!! AGACTAAGAAATATAAGTTT+TGG - chr1_1:17406364-17406383 Msa0011540:intron 20.0%
!! CTAAATAACATTTACAAATG+TGG + chr1_1:17406583-17406602 None:intergenic 20.0%
!! AATTGAAAGTTATAAGAGTT+GGG - chr1_1:17407007-17407026 Msa0011540:intron 20.0%
!!! TAATTCTGAAAAGTAGAAAA+GGG + chr1_1:17407776-17407795 None:intergenic 20.0%
!!! ATAATTCTGAAAAGTAGAAA+AGG + chr1_1:17407777-17407796 None:intergenic 20.0%
!!! TAATTCTGAAAAGTAGAAAA+GGG + chr1_1:17407776-17407795 None:intergenic 20.0%
!!! ATAATTCTGAAAAGTAGAAA+AGG + chr1_1:17407777-17407796 None:intergenic 20.0%
!!! ATTCTGTCATTTCATAAATT+TGG + chr1_1:17409833-17409852 None:intergenic 20.0%
!!! TCTCTTAAATTTAAAATCGT+TGG - chr1_1:17409855-17409874 Msa0011540:CDS 20.0%
!! GAAGAATTCAAATCAATAAA+TGG - chr1_1:17409932-17409951 Msa0011540:CDS 20.0%
!! ACAAATGATAGTTTATGAAT+TGG - chr1_1:17410097-17410116 Msa0011540:intron 20.0%
!! CAAAAAACAAATGAGTTATT+TGG + chr1_1:17410733-17410752 None:intergenic 20.0%
!!! CAAATAACTCATTTGTTTTT+TGG - chr1_1:17410731-17410750 Msa0011540:intron 20.0%
!! ATTCATCATTGCAATAATTA+AGG + chr1_1:17410976-17410995 None:intergenic 20.0%
!!! AGTTTTTGAGAAAGTTGAAT+TGG - chr1_1:17402973-17402992 Msa0011540:intron 25.0%
!!! GTTTTTGAGAAAGTTGAATT+GGG - chr1_1:17402974-17402993 Msa0011540:intron 25.0%
! GAATAAACTTAGATTCTGTT+CGG - chr1_1:17403188-17403207 Msa0011540:intron 25.0%
! ATTCTGTTCGGTAAAAATAA+CGG - chr1_1:17403200-17403219 Msa0011540:intron 25.0%
!!! TTTTTTCAATTAAGAGTGCA+AGG - chr1_1:17403358-17403377 Msa0011540:intron 25.0%
!!! CTTTTTAAGTAGCATTTGAA+AGG - chr1_1:17403432-17403451 Msa0011540:intron 25.0%
! TATTGTATGATAAGTGTTAC+AGG + chr1_1:17403573-17403592 None:intergenic 25.0%
! CAATAATAATCTATCTACGT+TGG - chr1_1:17403588-17403607 Msa0011540:CDS 25.0%
!! TATTTGTCTCTTCAATTTTG+AGG + chr1_1:17403631-17403650 None:intergenic 25.0%
!! TCCAAAAATAGTTTTTGTAC+TGG - chr1_1:17404208-17404227 Msa0011540:intron 25.0%
!! TCCAGTACAAAAACTATTTT+TGG + chr1_1:17404212-17404231 None:intergenic 25.0%
! TTAATCCTTGAAATTGAAGA+TGG - chr1_1:17404258-17404277 Msa0011540:CDS 25.0%
! TTATTTAAGAAATGCTCAGT+TGG + chr1_1:17404388-17404407 None:intergenic 25.0%
! TTATCCTATTAAATGACAGA+CGG - chr1_1:17404427-17404446 Msa0011540:intron 25.0%
!!! CATGCCATTTTATAAATTTG+AGG - chr1_1:17404492-17404511 Msa0011540:intron 25.0%
! CAGTCCTCAAATTTATAAAA+TGG + chr1_1:17404499-17404518 None:intergenic 25.0%
! GTTTCAGTATTAGAAATTGT+AGG + chr1_1:17404534-17404553 None:intergenic 25.0%
!! CTATTTATCGTTTTCTTGTA+TGG - chr1_1:17404587-17404606 Msa0011540:intron 25.0%
!! AAAATTTCTTTCTTTTGCAC+AGG - chr1_1:17404611-17404630 Msa0011540:intron 25.0%
!! AAATTTCTTTCTTTTGCACA+GGG - chr1_1:17404612-17404631 Msa0011540:intron 25.0%
!!! GAATGCATTTTAGAATTTGA+TGG - chr1_1:17404874-17404893 Msa0011540:intron 25.0%
! AAGATAAAGAAAGGAACAAA+GGG - chr1_1:17404956-17404975 Msa0011540:intron 25.0%
! TAGTGATTTACTTGTTTGAA+GGG + chr1_1:17405150-17405169 None:intergenic 25.0%
! ATAGTGATTTACTTGTTTGA+AGG + chr1_1:17405151-17405170 None:intergenic 25.0%
!! GAGTTGATTGAATTAATTGA+CGG + chr1_1:17405215-17405234 None:intergenic 25.0%
!! AGTTTCTGGAAATTTGTTTA+GGG + chr1_1:17405275-17405294 None:intergenic 25.0%
!! AAGTTTCTGGAAATTTGTTT+AGG + chr1_1:17405276-17405295 None:intergenic 25.0%
! GCAACATTTAGAAGATTAAA+TGG - chr1_1:17405438-17405457 Msa0011540:intron 25.0%
!! GGCTAAATAAAACAACTTTT+TGG + chr1_1:17405514-17405533 None:intergenic 25.0%
!! TAATCTTGATTTCTTTTAGG+AGG + chr1_1:17405823-17405842 None:intergenic 25.0%
!!! TAATCATGATTTGTTTTAGG+AGG + chr1_1:17405960-17405979 None:intergenic 25.0%
!!! TTTTTGTTTATCAGTACCTA+TGG + chr1_1:17406079-17406098 None:intergenic 25.0%
!! TTACTTAGGAGTACAATTAT+TGG - chr1_1:17406138-17406157 Msa0011540:intron 25.0%
!! TTACTTAGGAGTACAATTAT+TGG - chr1_1:17406138-17406157 Msa0011540:intron 25.0%
!!! TTAGCTGTATAAAAGTGTTT+GGG + chr1_1:17406460-17406479 None:intergenic 25.0%
! TTTACCTTAATAAATGAGCA+AGG + chr1_1:17406884-17406903 None:intergenic 25.0%
! GAATTGAAAGTTATAAGAGT+TGG - chr1_1:17407006-17407025 Msa0011540:intron 25.0%
! ATTGAAAGTTATAAGAGTTG+GGG - chr1_1:17407008-17407027 Msa0011540:intron 25.0%
!! AATATTTAAGCATTTGCTAC+AGG + chr1_1:17407113-17407132 None:intergenic 25.0%
! AGAAAGATAATCAATTAGGA+AGG + chr1_1:17407289-17407308 None:intergenic 25.0%
! AAAGACAAAAGAATCATACA+AGG - chr1_1:17407464-17407483 Msa0011540:intron 25.0%
!! TTTTCCAAAGAGAAAAGAAA+CGG + chr1_1:17407493-17407512 None:intergenic 25.0%
!! TTCTCTTTGGAAAAAAGATA+AGG - chr1_1:17407499-17407518 Msa0011540:intron 25.0%
!! CTGTTAAAATGCTACTATTT+TGG - chr1_1:17407534-17407553 Msa0011540:intron 25.0%
!!! TAAAATGCTACTATTTTGGA+TGG - chr1_1:17407538-17407557 Msa0011540:intron 25.0%
! AAAAGTAGAAAAGGGTTATT+TGG + chr1_1:17407768-17407787 None:intergenic 25.0%
!! TTTTATAATAGCAGTTATGG+CGG + chr1_1:17407887-17407906 None:intergenic 25.0%
!!! GAATTATTTCAGGTTCTAAT+GGG - chr1_1:17408270-17408289 Msa0011540:CDS 25.0%
!!! TTTTTGAATGGTCTTAAAGA+AGG + chr1_1:17408423-17408442 None:intergenic 25.0%
! AAAATTACTTTCAAATAGGC+CGG - chr1_1:17408441-17408460 Msa0011540:intron 25.0%
! TCATTTCTTTCGATTGAAAA+TGG - chr1_1:17408712-17408731 Msa0011540:intron 25.0%
! AAAAGTAGAAAAGGGTTATT+TGG + chr1_1:17407768-17407787 None:intergenic 25.0%
!! TTTTATAATAGCAGTTATGG+CGG + chr1_1:17407887-17407906 None:intergenic 25.0%
!! ACACAACTTTCAATTTTACA+TGG + chr1_1:17409515-17409534 None:intergenic 25.0%
! ACTTGAAAAACAATTGTGAA+TGG + chr1_1:17409760-17409779 None:intergenic 25.0%
! TTAAGAATCTGATCATTTAG+TGG - chr1_1:17409806-17409825 Msa0011540:CDS 25.0%
! AACATTATATTGTCCACATA+GGG + chr1_1:17410269-17410288 None:intergenic 25.0%
!!! GTTAGAGGATTTTGATATTA+AGG + chr1_1:17410457-17410476 None:intergenic 25.0%
! TCAAAATCCTCTAACAATAT+AGG - chr1_1:17410462-17410481 Msa0011540:intron 25.0%
! CAAAATCCTCTAACAATATA+GGG - chr1_1:17410463-17410482 Msa0011540:intron 25.0%
! AAAATCCTCTAACAATATAG+GGG - chr1_1:17410464-17410483 Msa0011540:intron 25.0%
!!! ATATTTTGCTGTTGATTTAG+CGG + chr1_1:17410536-17410555 None:intergenic 25.0%
!!! GAATGCATATTTTGAACTTA+AGG - chr1_1:17410886-17410905 Msa0011540:CDS 25.0%
! AAATTCATGCATCAAATAAC+AGG - chr1_1:17411277-17411296 Msa0011540:five_prime_UTR 25.0%
! AATTCATGCATCAAATAACA+GGG - chr1_1:17411278-17411297 Msa0011540:five_prime_UTR 25.0%
! CTTTAATTAATCATCTGTGA+TGG + chr1_1:17411337-17411356 None:intergenic 25.0%
!! TACTCAGAAAATTGGTGTTT+TGG + chr1_1:17402623-17402642 None:intergenic 30.0%
GAAGAAGTTACTCAGAAAAT+TGG + chr1_1:17402631-17402650 None:intergenic 30.0%
! TTCGGTAAAAATAACGGAAA+TGG - chr1_1:17403206-17403225 Msa0011540:intron 30.0%
! ATACTTAAGTTTTCTGCTTC+AGG - chr1_1:17403683-17403702 Msa0011540:intron 30.0%
! TACTTAAGTTTTCTGCTTCA+GGG - chr1_1:17403684-17403703 Msa0011540:intron 30.0%
TGTAACTATGTATGCATCAT+TGG - chr1_1:17403731-17403750 Msa0011540:intron 30.0%
GTAACTATGTATGCATCATT+GGG - chr1_1:17403732-17403751 Msa0011540:intron 30.0%
TTTATGTCACTCATTGAATG+AGG - chr1_1:17403764-17403783 Msa0011540:intron 30.0%
AGCTTAATGCAAAAACATCT+CGG + chr1_1:17403813-17403832 None:intergenic 30.0%
! GTTTTTGCATTAAGCTGTTA+TGG - chr1_1:17403817-17403836 Msa0011540:intron 30.0%
ATTGACCATCTTCAATTTCA+AGG + chr1_1:17404266-17404285 None:intergenic 30.0%
! CGGTGATTACTTCTATATTT+TGG - chr1_1:17404553-17404572 Msa0011540:intron 30.0%
TGTTCCAAAACTTGAGAAAA+AGG - chr1_1:17404689-17404708 Msa0011540:intron 30.0%
! ACATCCTTTTTCTCAAGTTT+TGG + chr1_1:17404696-17404715 None:intergenic 30.0%
TACACAAAAACACGAGAAAA+TGG + chr1_1:17404843-17404862 None:intergenic 30.0%
!! ATTCTAAAATGCATTCGAGT+TGG + chr1_1:17404870-17404889 None:intergenic 30.0%
ACATCAAGCAAGATAAAGAA+AGG - chr1_1:17404947-17404966 Msa0011540:intron 30.0%
CAAGATAAAGAAAGGAACAA+AGG - chr1_1:17404955-17404974 Msa0011540:intron 30.0%
AGATAAAGAAAGGAACAAAG+GGG - chr1_1:17404957-17404976 Msa0011540:intron 30.0%
!!! TGTTTTATTTAGCCTATGAG+AGG - chr1_1:17405520-17405539 Msa0011540:intron 30.0%
AAAAAAATCCGAGCAATTCT+TGG - chr1_1:17405618-17405637 Msa0011540:intron 30.0%
AGTTCATCAATATCTGTCTT+GGG - chr1_1:17405697-17405716 Msa0011540:intron 30.0%
TTAAAAACACAAGCTAGACT+AGG - chr1_1:17405847-17405866 Msa0011540:intron 30.0%
TAAAAACACAAGCTAGACTA+GGG - chr1_1:17405848-17405867 Msa0011540:intron 30.0%
TTAAAAACACAAGCTAGACT+AGG - chr1_1:17405847-17405866 Msa0011540:intron 30.0%
! TAATAGCCTGTCATTTACTT+AGG - chr1_1:17406124-17406143 Msa0011540:intron 30.0%
ACAGGCTAACAGAATAAAAT+AGG + chr1_1:17406213-17406232 None:intergenic 30.0%
TCGGCATAACAGAATAAAAT+AGG + chr1_1:17406311-17406330 None:intergenic 30.0%
!!! TTTTGGCTTTTGAAATCTGT+TGG - chr1_1:17406381-17406400 Msa0011540:intron 30.0%
!!! TTTGGCTTTTGAAATCTGTT+GGG - chr1_1:17406382-17406401 Msa0011540:intron 30.0%
!! GTTAGCTGTATAAAAGTGTT+TGG + chr1_1:17406461-17406480 None:intergenic 30.0%
!! GCTATTGAAGTTTGTTAGTT+TGG + chr1_1:17406512-17406531 None:intergenic 30.0%
GTTATTTAGCGTAAATGACA+AGG - chr1_1:17406594-17406613 Msa0011540:intron 30.0%
ACAACTTTATCATTGCACTA+TGG - chr1_1:17406619-17406638 Msa0011540:intron 30.0%
TTAATAAATGAGCAAGGAAG+AGG + chr1_1:17406878-17406897 None:intergenic 30.0%
TCTTCCTTGCTCATTTATTA+AGG - chr1_1:17406877-17406896 Msa0011540:intron 30.0%
AAACCACCATGTTACTAAAA+GGG + chr1_1:17407085-17407104 None:intergenic 30.0%
TCTCATGATGTAGATAATTG+TGG + chr1_1:17407137-17407156 None:intergenic 30.0%
ATCCTATATAAGAAAATGGC+AGG + chr1_1:17407319-17407338 None:intergenic 30.0%
TTAGTTAAATATCCACCTTC+AGG + chr1_1:17407369-17407388 None:intergenic 30.0%
AACATATATTAAACCTGTCG+TGG + chr1_1:17407587-17407606 None:intergenic 30.0%
TAGAAAAGGGTTATTTGGAA+GGG + chr1_1:17407763-17407782 None:intergenic 30.0%
TGTATTGCGTGTGAATAAAA+GGG + chr1_1:17407819-17407838 None:intergenic 30.0%
ATGTATTGCGTGTGAATAAA+AGG + chr1_1:17407820-17407839 None:intergenic 30.0%
AACAAATCGAGGTTTCAATT+AGG + chr1_1:17408020-17408039 None:intergenic 30.0%
!! GGAATTATTTCAGGTTCTAA+TGG - chr1_1:17408269-17408288 Msa0011540:CDS 30.0%
!! GATTATGCACAAAGTATTGA+TGG + chr1_1:17408348-17408367 None:intergenic 30.0%
TGAATTAAAACTTCATCCAC+TGG + chr1_1:17408391-17408410 None:intergenic 30.0%
AGATTGAGCAGTAATTCAAA+GGG - chr1_1:17408537-17408556 Msa0011540:intron 30.0%
TTTAATGGTGAAGACGTATT+CGG + chr1_1:17408759-17408778 None:intergenic 30.0%
! ACGGAAGTTACAGTTTTTAA+TGG + chr1_1:17408774-17408793 None:intergenic 30.0%
TGATATCAGTTTCTATCAAC+TGG + chr1_1:17409117-17409136 None:intergenic 30.0%
TAGAAAAGGGTTATTTGGAA+GGG + chr1_1:17407763-17407782 None:intergenic 30.0%
TGTATTGCGTGTGAATAAAA+GGG + chr1_1:17407819-17407838 None:intergenic 30.0%
ATGTATTGCGTGTGAATAAA+AGG + chr1_1:17407820-17407839 None:intergenic 30.0%
TTGATGAAAAAGGAATGAGA+TGG - chr1_1:17409596-17409615 Msa0011540:intron 30.0%
! TTTTACGATCAACGATTTCT+AGG + chr1_1:17409663-17409682 None:intergenic 30.0%
AGAAATCGTTGATCGTAAAA+AGG - chr1_1:17409663-17409682 Msa0011540:intron 30.0%
TTCTTCTACTGATGATAGTT+TGG + chr1_1:17409918-17409937 None:intergenic 30.0%
ATTTAATAAACCAGTTGCAG+AGG + chr1_1:17410218-17410237 None:intergenic 30.0%
! GCAACTGGTTTATTAAATAC+AGG - chr1_1:17410220-17410239 Msa0011540:intron 30.0%
GGTTTATTAAATACAGGTTG+AGG - chr1_1:17410226-17410245 Msa0011540:intron 30.0%
ACATTATATTGTCCACATAG+GGG + chr1_1:17410268-17410287 None:intergenic 30.0%
CAACATTATATTGTCCACAT+AGG + chr1_1:17410270-17410289 None:intergenic 30.0%
AATCAAGGAATTCCTTATTC+AGG - chr1_1:17410365-17410384 Msa0011540:intron 30.0%
!! AGTTCTGAAAAACCTGAATA+AGG + chr1_1:17410380-17410399 None:intergenic 30.0%
GCTAAATCAACAGCAAAATA+TGG - chr1_1:17410535-17410554 Msa0011540:intron 30.0%
TCATTCTGATGTTGATATCT+AGG + chr1_1:17410601-17410620 None:intergenic 30.0%
CTTAACAATATGTTCGTAGT+AGG + chr1_1:17410792-17410811 None:intergenic 30.0%
CTACTACGAACATATTGTTA+AGG - chr1_1:17410790-17410809 Msa0011540:intron 30.0%
GTAGTTTATGAACTATTTGC+AGG - chr1_1:17411004-17411023 Msa0011540:CDS 30.0%
GAAAGCAATTTAATTCTTGC+TGG + chr1_1:17411065-17411084 None:intergenic 30.0%
TTAAATTGCTTTCTGATCCA+TGG - chr1_1:17411072-17411091 Msa0011540:CDS 30.0%
TTGTTTGGATGTATCTATTG+AGG - chr1_1:17411203-17411222 Msa0011540:CDS 30.0%
!!! GAGGTTCTTGTTTTTTTACA+TGG - chr1_1:17411222-17411241 Msa0011540:CDS 30.0%
ATTCATGCATCAAATAACAG+GGG - chr1_1:17411279-17411298 Msa0011540:five_prime_UTR 30.0%
! AGTATGATGGTGACAATGTA+GGG + chr1_1:17402695-17402714 None:intergenic 35.0%
! AATTGTTTGAAGAAGCATGC+AGG - chr1_1:17402870-17402889 Msa0011540:CDS 35.0%
TTGAATTGGGTGAGTATGAA+TGG - chr1_1:17402987-17403006 Msa0011540:intron 35.0%
! TCGTATGATGAAGCTTTTGA+TGG - chr1_1:17403013-17403032 Msa0011540:intron 35.0%
! TTGGGATTTTTGCTGATACT+AGG - chr1_1:17403092-17403111 Msa0011540:intron 35.0%
! TGGGATTTTTGCTGATACTA+GGG - chr1_1:17403093-17403112 Msa0011540:intron 35.0%
TACGCTATCAACTATAAGCT+AGG + chr1_1:17403243-17403262 None:intergenic 35.0%
GTAGTGTTCGGTAAAATTAG+CGG - chr1_1:17403283-17403302 Msa0011540:intron 35.0%
TCAAGTAGTAAGGATTTAGC+TGG + chr1_1:17403523-17403542 None:intergenic 35.0%
GCAGTTATCATGTATACAAG+TGG - chr1_1:17404138-17404157 Msa0011540:intron 35.0%
! ATGTATACAAGTGGAAGTAC+TGG - chr1_1:17404147-17404166 Msa0011540:intron 35.0%
TGATTGAATTGATCGACAGA+TGG + chr1_1:17404298-17404317 None:intergenic 35.0%
! TAGTCCGTCTGTCATTTAAT+AGG + chr1_1:17404434-17404453 None:intergenic 35.0%
ATATCTAGCATACTTGCCAA+TGG - chr1_1:17404716-17404735 Msa0011540:intron 35.0%
AAACACGAGAAAATGGAAAC+AGG + chr1_1:17404836-17404855 None:intergenic 35.0%
AAAGGAGATCCATATCCTAT+AGG + chr1_1:17404914-17404933 None:intergenic 35.0%
GATAAAGAAAGGAACAAAGG+GGG - chr1_1:17404958-17404977 Msa0011540:intron 35.0%
! TGTGTTGATGCCTACTTTAT+TGG - chr1_1:17404988-17405007 Msa0011540:intron 35.0%
ACACATGAAGCATATGAGAT+AGG + chr1_1:17405098-17405117 None:intergenic 35.0%
TACTTGTTTGAAGGGAAGTT+TGG + chr1_1:17405142-17405161 None:intergenic 35.0%
TCAATCAACTCTGATGAATC+TGG - chr1_1:17405224-17405243 Msa0011540:intron 35.0%
TTTATTTAGCCTATGAGAGG+AGG - chr1_1:17405523-17405542 Msa0011540:intron 35.0%
CAGTTCATCAATATCTGTCT+TGG - chr1_1:17405696-17405715 Msa0011540:intron 35.0%
GATATCTTATAGCCTATGGT+TGG + chr1_1:17405938-17405957 None:intergenic 35.0%
TGTTTATCAGTACCTATGGT+TGG + chr1_1:17406075-17406094 None:intergenic 35.0%
TGTACTCCTAAGTAAATGAC+AGG + chr1_1:17406133-17406152 None:intergenic 35.0%
! TGTTAGCCTGTCATTTACTT+AGG - chr1_1:17406222-17406241 Msa0011540:intron 35.0%
TGTACTCCTAAGTAAATGAC+AGG + chr1_1:17406133-17406152 None:intergenic 35.0%
AAATCTGTTGGGTGCTAAAT+GGG - chr1_1:17406393-17406412 Msa0011540:intron 35.0%
CAAATGTGGAATTGCAATGT+GGG + chr1_1:17406569-17406588 None:intergenic 35.0%
ACAAATGTGGAATTGCAATG+TGG + chr1_1:17406570-17406589 None:intergenic 35.0%
!! GGCTTTTTCTCCTTTTGTAA+AGG - chr1_1:17406640-17406659 Msa0011540:intron 35.0%
!! GATTTTGATGATACGTCTGT+TGG - chr1_1:17406839-17406858 Msa0011540:intron 35.0%
!!! ATCTAGCTCTTTTAAAGCAG+AGG - chr1_1:17406972-17406991 Msa0011540:intron 35.0%
! TTCACAACTCCTCATTTTAG+AGG - chr1_1:17407057-17407076 Msa0011540:CDS 35.0%
!! AAAAGGGTTCCTCTAAAATG+AGG + chr1_1:17407069-17407088 None:intergenic 35.0%
CAAACCACCATGTTACTAAA+AGG + chr1_1:17407086-17407105 None:intergenic 35.0%
TCTACATCATGAGATGTGAT+AGG - chr1_1:17407143-17407162 Msa0011540:intron 35.0%
!!! AGCCTGCCATTTTCTTATAT+AGG - chr1_1:17407314-17407333 Msa0011540:intron 35.0%
!! TGTTTTGTTAGCTAATCGAC+TGG - chr1_1:17407343-17407362 Msa0011540:intron 35.0%
AAGTAACCAAGAGTGACATT+TGG + chr1_1:17407432-17407451 None:intergenic 35.0%
! GTAACCGTTTCTTTTCTCTT+TGG - chr1_1:17407486-17407505 Msa0011540:intron 35.0%
! CTTTGGAAAAAAGATAAGGC+AGG - chr1_1:17407503-17407522 Msa0011540:intron 35.0%
GTTTAGATTGACAGTGAGTT+TGG - chr1_1:17407604-17407623 Msa0011540:intron 35.0%
GTAGAAAAGGGTTATTTGGA+AGG + chr1_1:17407764-17407783 None:intergenic 35.0%
CATCTTCACCATTGTGATAA+TGG - chr1_1:17408095-17408114 Msa0011540:intron 35.0%
TGCACTTACCATTATCACAA+TGG + chr1_1:17408106-17408125 None:intergenic 35.0%
! TCTGGATCTTCTAGAGAATA+GGG + chr1_1:17408156-17408175 None:intergenic 35.0%
! TTCTGGATCTTCTAGAGAAT+AGG + chr1_1:17408157-17408176 None:intergenic 35.0%
! TAATTCCAGTACTGTCACTT+GGG + chr1_1:17408256-17408275 None:intergenic 35.0%
ATAATTCCAGTACTGTCACT+TGG + chr1_1:17408257-17408276 None:intergenic 35.0%
! GACAGTACTGGAATTATTTC+AGG - chr1_1:17408260-17408279 Msa0011540:CDS 35.0%
! AGTGTTGGACTAAGTTCTAA+CGG + chr1_1:17408300-17408319 None:intergenic 35.0%
AAGAACATTGCAGTGAACAA+GGG + chr1_1:17408324-17408343 None:intergenic 35.0%
AAAGAACATTGCAGTGAACA+AGG + chr1_1:17408325-17408344 None:intergenic 35.0%
! GGAAGGATTATCTGAAATGA+TGG + chr1_1:17408370-17408389 None:intergenic 35.0%
ATTTCAGATAATCCTTCCAG+TGG - chr1_1:17408372-17408391 Msa0011540:CDS 35.0%
TTAAAACTTCATCCACTGGA+AGG + chr1_1:17408387-17408406 None:intergenic 35.0%
! TGGTCTTAAAGAAGGCATAA+GGG + chr1_1:17408415-17408434 None:intergenic 35.0%
! ATGGTCTTAAAGAAGGCATA+AGG + chr1_1:17408416-17408435 None:intergenic 35.0%
GAGATTGAGCAGTAATTCAA+AGG - chr1_1:17408536-17408555 Msa0011540:intron 35.0%
TCAAATCTGCAGTCATACAA+AGG + chr1_1:17408587-17408606 None:intergenic 35.0%
TTGTGCACAAAATCCAACAT+GGG + chr1_1:17408616-17408635 None:intergenic 35.0%
TTTGTGCACAAAATCCAACA+TGG + chr1_1:17408617-17408636 None:intergenic 35.0%
CTTTGACATGGTATAAATGG+TGG + chr1_1:17408644-17408663 None:intergenic 35.0%
! AGGCTTTGACATGGTATAAA+TGG + chr1_1:17408647-17408666 None:intergenic 35.0%
GAATGATACAGAGAAGTTAC+AGG + chr1_1:17408694-17408713 None:intergenic 35.0%
TTAATGGTGAAGACGTATTC+GGG + chr1_1:17408758-17408777 None:intergenic 35.0%
ATGATGATTCAACGTTGGAT+GGG + chr1_1:17408851-17408870 None:intergenic 35.0%
GTTAGAAATGAGACAAACCA+TGG + chr1_1:17408979-17408998 None:intergenic 35.0%
GTAGAAAAGGGTTATTTGGA+AGG + chr1_1:17407764-17407783 None:intergenic 35.0%
TTTATAAAATCACGACGCCA+CGG - chr1_1:17409453-17409472 Msa0011540:intron 35.0%
TTAGTATCATACCTTTCCCA+AGG + chr1_1:17409722-17409741 None:intergenic 35.0%
! TTGTATTTTTCCTCTGCAAC+TGG - chr1_1:17410205-17410224 Msa0011540:CDS 35.0%
TCCTTTCCATAGTTATTGTG+TGG - chr1_1:17410298-17410317 Msa0011540:intron 35.0%
!! CTCTAAAGAAGAAAGCATCA+AGG - chr1_1:17410403-17410422 Msa0011540:intron 35.0%
!! TAAAGAAGAAAGCATCAAGG+AGG - chr1_1:17410406-17410425 Msa0011540:intron 35.0%
CATTACCCCTATATTGTTAG+AGG + chr1_1:17410472-17410491 None:intergenic 35.0%
!!! GAGCAAGTTTTTTACGCTTT+GGG - chr1_1:17410557-17410576 Msa0011540:intron 35.0%
CTTCAAAGTTCAAACGTAGA+TGG - chr1_1:17410676-17410695 Msa0011540:intron 35.0%
GATCCATCATGGATTCTTAA+GGG + chr1_1:17410770-17410789 None:intergenic 35.0%
CTACGAACATATTGTTAAGG+AGG - chr1_1:17410793-17410812 Msa0011540:intron 35.0%
TAAGGTAACAAACACAATGC+AGG + chr1_1:17410958-17410977 None:intergenic 35.0%
ATAACTTCAGAAGTTCTTCC+TGG + chr1_1:17411163-17411182 None:intergenic 35.0%
! TCTGAAGTTATACGCTTCAT+AGG - chr1_1:17411172-17411191 Msa0011540:CDS 35.0%
TCATAGGCTAACTAGTTGTT+TGG - chr1_1:17411188-17411207 Msa0011540:CDS 35.0%
! GAGTATGATGGTGACAATGT+AGG + chr1_1:17402696-17402715 None:intergenic 40.0%
! GAACAGAAGATTTGCTTCTC+CGG - chr1_1:17402811-17402830 Msa0011540:CDS 40.0%
CATACGGAGAGATTACTGTT+GGG - chr1_1:17402896-17402915 Msa0011540:CDS 40.0%
ATTACTGTTGGGAACAAGAG+TGG - chr1_1:17402907-17402926 Msa0011540:intron 40.0%
! AACAAGAGTGGTTGTTTCGA+AGG - chr1_1:17402919-17402938 Msa0011540:intron 40.0%
! AGTGGTTGTTTCGAAGGAAA+TGG - chr1_1:17402925-17402944 Msa0011540:intron 40.0%
!! TGTGAAGTTTGCTAGTGGTT+TGG - chr1_1:17403039-17403058 Msa0011540:intron 40.0%
TTGCTGATACTAGGGTTGAA+TGG - chr1_1:17403101-17403120 Msa0011540:intron 40.0%
TTAGCTGGTATGCAATGTCA+GGG + chr1_1:17403508-17403527 None:intergenic 40.0%
TTTAGCTGGTATGCAATGTC+AGG + chr1_1:17403509-17403528 None:intergenic 40.0%
!!! GTCTCTTCAATTTTGAGGCT+GGG + chr1_1:17403626-17403645 None:intergenic 40.0%
!!! TGTCTCTTCAATTTTGAGGC+TGG + chr1_1:17403627-17403646 None:intergenic 40.0%
TATGTATGCATCATTGGGAG+AGG - chr1_1:17403737-17403756 Msa0011540:intron 40.0%
AAAACATCTCGGTGAGACAA+AGG + chr1_1:17403802-17403821 None:intergenic 40.0%
AATTCTGTTACTGCAGACAG+AGG - chr1_1:17403900-17403919 Msa0011540:intron 40.0%
AGTGAAACGTGTGATATGCA+TGG - chr1_1:17403990-17404009 Msa0011540:intron 40.0%
AGAGGTAAATCAGCATCAAC+AGG + chr1_1:17404105-17404124 None:intergenic 40.0%
TGATAACTGCAACATCAGCT+GGG + chr1_1:17404128-17404147 None:intergenic 40.0%
ATGATAACTGCAACATCAGC+TGG + chr1_1:17404129-17404148 None:intergenic 40.0%
!! TGGAAGTACTGGATTACCTA+AGG - chr1_1:17404158-17404177 Msa0011540:intron 40.0%
! AGTACTGGATTACCTAAGGT+TGG - chr1_1:17404162-17404181 Msa0011540:intron 40.0%
GTGAAAGGAAATCCAACCTT+AGG + chr1_1:17404177-17404196 None:intergenic 40.0%
TGGACTGTCAATCTAGTGAA+AGG + chr1_1:17404192-17404211 None:intergenic 40.0%
AGTTCAAGGATATGAGCCAT+TGG + chr1_1:17404735-17404754 None:intergenic 40.0%
TTGCAGCTGAGGTATGTAAT+GGG - chr1_1:17404754-17404773 Msa0011540:intron 40.0%
! TAGAATTTGATGGCAGCAGT+TGG - chr1_1:17404884-17404903 Msa0011540:intron 40.0%
! AGAATTTGATGGCAGCAGTT+GGG - chr1_1:17404885-17404904 Msa0011540:intron 40.0%
GTTGGGATACCTATAGGATA+TGG - chr1_1:17404902-17404921 Msa0011540:intron 40.0%
CTTGCTTGATGTATCTGTGA+GGG + chr1_1:17404939-17404958 None:intergenic 40.0%
TCTTGCTTGATGTATCTGTG+AGG + chr1_1:17404940-17404959 None:intergenic 40.0%
CATGAAGCATATGAGATAGG+TGG + chr1_1:17405095-17405114 None:intergenic 40.0%
! GCTCATTTGAAGCAAGTTTC+TGG + chr1_1:17405289-17405308 None:intergenic 40.0%
ACTTGCTTCATTGCCAATGT+AGG - chr1_1:17405467-17405486 Msa0011540:intron 40.0%
AGGAGGTTGAAAGCAGTTAA+TGG - chr1_1:17405540-17405559 Msa0011540:intron 40.0%
TGAAAGCAGTTAATGGAAGC+TGG - chr1_1:17405547-17405566 Msa0011540:intron 40.0%
AAAATCCGAGCAATTCTTGG+TGG - chr1_1:17405621-17405640 Msa0011540:intron 40.0%
AGTGATTTCTCTCCAACCAT+AGG - chr1_1:17405923-17405942 Msa0011540:intron 40.0%
GGAGGATATCTTATAGCCTA+TGG + chr1_1:17405942-17405961 None:intergenic 40.0%
! TTATGCCGATTGAGCATTAG+AGG - chr1_1:17406322-17406341 Msa0011540:intron 40.0%
CTAGTCCTCTAATGCTCAAT+CGG + chr1_1:17406330-17406349 None:intergenic 40.0%
GAAATCTGTTGGGTGCTAAA+TGG - chr1_1:17406392-17406411 Msa0011540:intron 40.0%
!!! CATCCTTTGAGCTAGCTTTT+GGG + chr1_1:17406431-17406450 None:intergenic 40.0%
!!! TCATCCTTTGAGCTAGCTTT+TGG + chr1_1:17406432-17406451 None:intergenic 40.0%
AAAAGCTAGCTCAAAGGATG+AGG - chr1_1:17406431-17406450 Msa0011540:intron 40.0%
! CTTTTATACAGCTAACAGCC+CGG - chr1_1:17406465-17406484 Msa0011540:CDS 40.0%
! TTTTATACAGCTAACAGCCC+GGG - chr1_1:17406466-17406485 Msa0011540:CDS 40.0%
AGACCATATCCTTGACCTAT+TGG + chr1_1:17406788-17406807 None:intergenic 40.0%
ATAAATGAGCAAGGAAGAGG+AGG + chr1_1:17406875-17406894 None:intergenic 40.0%
!!! CTTTTAAAGCAGAGGATACG+TGG - chr1_1:17406980-17406999 Msa0011540:intron 40.0%
! GAGGAACCCTTTTAGTAACA+TGG - chr1_1:17407076-17407095 Msa0011540:CDS 40.0%
! GAACCCTTTTAGTAACATGG+TGG - chr1_1:17407079-17407098 Msa0011540:CDS 40.0%
CATCATGAGATGTGATAGGT+TGG - chr1_1:17407147-17407166 Msa0011540:intron 40.0%
TAGATTGACAGTGAGTTTGG+TGG - chr1_1:17407607-17407626 Msa0011540:intron 40.0%
AGATTGACAGTGAGTTTGGT+GGG - chr1_1:17407608-17407627 Msa0011540:intron 40.0%
CCAAGACTCTCGAATTTCTT+GGG + chr1_1:17407704-17407723 None:intergenic 40.0%
ACCAAGACTCTCGAATTTCT+TGG + chr1_1:17407705-17407724 None:intergenic 40.0%
AAGCTCTCTAATTCTTGGAG+GGG + chr1_1:17407733-17407752 None:intergenic 40.0%
CAAGCTCTCTAATTCTTGGA+GGG + chr1_1:17407734-17407753 None:intergenic 40.0%
AGACCAAGCTCTCTAATTCT+TGG + chr1_1:17407738-17407757 None:intergenic 40.0%
GTGAATAAAAGGGTAACCAC+AGG + chr1_1:17407809-17407828 None:intergenic 40.0%
AGGACAAGGTGAAACTTTAG+GGG + chr1_1:17407958-17407977 None:intergenic 40.0%
GAGGACAAGGTGAAACTTTA+GGG + chr1_1:17407959-17407978 None:intergenic 40.0%
TGAGGACAAGGTGAAACTTT+AGG + chr1_1:17407960-17407979 None:intergenic 40.0%
AAAGTTTCACCTTGTCCTCA+AGG - chr1_1:17407960-17407979 Msa0011540:intron 40.0%
GGTTTCAATTAGGCTCCAAT+GGG + chr1_1:17408010-17408029 None:intergenic 40.0%
AGGTTTCAATTAGGCTCCAA+TGG + chr1_1:17408011-17408030 None:intergenic 40.0%
!! ACCTCGATTTGTTGTGAAAG+TGG - chr1_1:17408027-17408046 Msa0011540:intron 40.0%
!! CCTCGATTTGTTGTGAAAGT+GGG - chr1_1:17408028-17408047 Msa0011540:intron 40.0%
ACAATGGTGAAGATGAAGCA+TGG + chr1_1:17408090-17408109 None:intergenic 40.0%
TGCATGTATTATGTGTGAGG+CGG + chr1_1:17408193-17408212 None:intergenic 40.0%
CATAATACATGCAGCCCTAT+TGG - chr1_1:17408200-17408219 Msa0011540:intron 40.0%
TCGTGTATCATCCACCAATA+GGG + chr1_1:17408217-17408236 None:intergenic 40.0%
!! CCCTCTGAAATATACTGAAC+CGG + chr1_1:17408463-17408482 None:intergenic 40.0%
CCGGTTCAGTATATTTCAGA+GGG - chr1_1:17408460-17408479 Msa0011540:intron 40.0%
CGGTTCAGTATATTTCAGAG+GGG - chr1_1:17408461-17408480 Msa0011540:intron 40.0%
CAATCTCAAACAGACAGGAA+CGG + chr1_1:17408523-17408542 None:intergenic 40.0%
! GATTTGAAGTCATCCCATGT+TGG - chr1_1:17408600-17408619 Msa0011540:intron 40.0%
AGAGAAGTTACAGGCAGTTA+TGG + chr1_1:17408685-17408704 None:intergenic 40.0%
ATTGAAAATGGCGCTCAACT+TGG - chr1_1:17408724-17408743 Msa0011540:intron 40.0%
AGAAGAACACTCGAGAAACA+CGG + chr1_1:17408793-17408812 None:intergenic 40.0%
TGATGATTCAACGTTGGATG+GGG + chr1_1:17408850-17408869 None:intergenic 40.0%
GATGATGATTCAACGTTGGA+TGG + chr1_1:17408852-17408871 None:intergenic 40.0%
CATGGATGATGATTCAACGT+TGG + chr1_1:17408856-17408875 None:intergenic 40.0%
TGCACAACATGATTCACACA+TGG + chr1_1:17408874-17408893 None:intergenic 40.0%
TGAAACTATGCGTGCAATAG+TGG + chr1_1:17408904-17408923 None:intergenic 40.0%
!! ATGGAAGAAGAACGGATTGA+AGG + chr1_1:17408960-17408979 None:intergenic 40.0%
TTCAATCCGTTCTTCTTCCA+TGG - chr1_1:17408959-17408978 Msa0011540:CDS 40.0%
GACAAACCATGGAAGAAGAA+CGG + chr1_1:17408968-17408987 None:intergenic 40.0%
TTCACTGTAGGGGAAGTTAA+TGG + chr1_1:17409063-17409082 None:intergenic 40.0%
AGGGCAAGAAATTCACTGTA+GGG + chr1_1:17409074-17409093 None:intergenic 40.0%
CCAAGACTCTCGAATTTCTT+GGG + chr1_1:17407704-17407723 None:intergenic 40.0%
ACCAAGACTCTCGAATTTCT+TGG + chr1_1:17407705-17407724 None:intergenic 40.0%
GTGAATAAAAGGGTAACCAC+AGG + chr1_1:17407809-17407828 None:intergenic 40.0%
TGAGTTTGACAAAATCACCG+TGG + chr1_1:17409473-17409492 None:intergenic 40.0%
!! ATTATTTGCTTGGTGCGACT+AGG - chr1_1:17409573-17409592 Msa0011540:intron 40.0%
!! TGCGACTAGGTTGATGAAAA+AGG - chr1_1:17409586-17409605 Msa0011540:intron 40.0%
ATAGGGAGGTTTCATCAAGA+TGG - chr1_1:17409634-17409653 Msa0011540:intron 40.0%
GACATTGTTAAACTGCAGCA+TGG - chr1_1:17409685-17409704 Msa0011540:intron 40.0%
! CATGGAGAGTATGTTTCCTT+GGG - chr1_1:17409703-17409722 Msa0011540:intron 40.0%
AGAGTATGTTTCCTTGGGAA+AGG - chr1_1:17409708-17409727 Msa0011540:intron 40.0%
GCCACACAATAACTATGGAA+AGG + chr1_1:17410302-17410321 None:intergenic 40.0%
CAAGTGCCACACAATAACTA+TGG + chr1_1:17410307-17410326 None:intergenic 40.0%
! TTATTGTGTGGCACTTGTTG+TGG - chr1_1:17410310-17410329 Msa0011540:intron 40.0%
TCAGTCCACATTGGAAGAAT+GGG - chr1_1:17410337-17410356 Msa0011540:intron 40.0%
! GAAGAATGGGCTTCAAATCA+AGG - chr1_1:17410350-17410369 Msa0011540:intron 40.0%
!!! GGAGCAAGTTTTTTACGCTT+TGG - chr1_1:17410556-17410575 Msa0011540:intron 40.0%
CATCATGGATTCTTAAGGGT+AGG + chr1_1:17410766-17410785 None:intergenic 40.0%
CTACCCTTAAGAATCCATGA+TGG - chr1_1:17410764-17410783 Msa0011540:intron 40.0%
GGATCCATCATGGATTCTTA+AGG + chr1_1:17410771-17410790 None:intergenic 40.0%
GACTCTCTAAATGCTGTCTT+TGG - chr1_1:17410908-17410927 Msa0011540:CDS 40.0%
TTCCTGGAAAGTCTTTCTGA+CGG + chr1_1:17411147-17411166 None:intergenic 40.0%
! ATGGGAAGGTGTGAGTACAT+TGG - chr1_1:17402844-17402863 Msa0011540:CDS 45.0%
! AGAAGCATGCAGGAAGCATA+CGG - chr1_1:17402880-17402899 Msa0011540:CDS 45.0%
GCATACGGAGAGATTACTGT+TGG - chr1_1:17402895-17402914 Msa0011540:CDS 45.0%
TCGAAGGAAATGGAGAAGAG+TGG - chr1_1:17402935-17402954 Msa0011540:intron 45.0%
AAGGAAATGGAGAAGAGTGG+TGG - chr1_1:17402938-17402957 Msa0011540:intron 45.0%
!! GGTGTTGTGAAGTTTGCTAG+TGG - chr1_1:17403034-17403053 Msa0011540:intron 45.0%
ATGGAAAGGATGAGAGGGTT+GGG - chr1_1:17403074-17403093 Msa0011540:intron 45.0%
TGAATGGTTCCTTGCTCTTC+AGG - chr1_1:17403117-17403136 Msa0011540:intron 45.0%
GATTACGAACCTGAAGAGCA+AGG + chr1_1:17403129-17403148 None:intergenic 45.0%
! TTCTGCTTCAGGGTTGTTTC+AGG - chr1_1:17403694-17403713 Msa0011540:intron 45.0%
GAGGTCACGACAGTAATTTG+TGG - chr1_1:17403919-17403938 Msa0011540:intron 45.0%
! CAACAGATGAGGCATCAGAT+GGG + chr1_1:17404026-17404045 None:intergenic 45.0%
AAGTCGCTTAACATCTGCGA+AGG + chr1_1:17404070-17404089 None:intergenic 45.0%
TTCGCAGATGTTAAGCGACT+TGG - chr1_1:17404069-17404088 Msa0011540:intron 45.0%
TATCCTTGAACTTGCAGCTG+AGG - chr1_1:17404743-17404762 Msa0011540:intron 45.0%
ATACCTCAGCTGCAAGTTCA+AGG + chr1_1:17404749-17404768 None:intergenic 45.0%
CTTGCAGCTGAGGTATGTAA+TGG - chr1_1:17404753-17404772 Msa0011540:intron 45.0%
GATGTATCTGTGAGGGTCAA+AGG + chr1_1:17404932-17404951 None:intergenic 45.0%
GGTACAGCAGCCAATAAAGT+AGG + chr1_1:17405001-17405020 None:intergenic 45.0%
ATTCTTGACCGTGTTCGTGA+TGG - chr1_1:17405025-17405044 Msa0011540:intron 45.0%
TGAACACACCATCACGAACA+CGG + chr1_1:17405036-17405055 None:intergenic 45.0%
! TCGTGATGGTGTGTTCAAGA+AGG - chr1_1:17405039-17405058 Msa0011540:intron 45.0%
GAAGCATATGAGATAGGTGG+AGG + chr1_1:17405092-17405111 None:intergenic 45.0%
CATATGCTTCATGTGTGTGC+TGG - chr1_1:17405102-17405121 Msa0011540:intron 45.0%
AAGGGAAGTTTGGATGCAAC+TGG + chr1_1:17405132-17405151 None:intergenic 45.0%
GCCAATGTAGGTGAATGCAA+CGG - chr1_1:17405479-17405498 Msa0011540:intron 45.0%
CCAATGTAGGTGAATGCAAC+GGG - chr1_1:17405480-17405499 Msa0011540:intron 45.0%
TGCTTTCAACCTCCTCTCAT+AGG + chr1_1:17405535-17405554 None:intergenic 45.0%
GCAGTTAATGGAAGCTGGTT+TGG - chr1_1:17405552-17405571 Msa0011540:intron 45.0%
ATCCGTTTCATACTGTCTGG+CGG - chr1_1:17405648-17405667 Msa0011540:intron 45.0%
TGCTGAGTATCACCAGAAAG+GGG + chr1_1:17405678-17405697 None:intergenic 45.0%
CTGCTGAGTATCACCAGAAA+GGG + chr1_1:17405679-17405698 None:intergenic 45.0%
ACTGCTGAGTATCACCAGAA+AGG + chr1_1:17405680-17405699 None:intergenic 45.0%
CGTGATTTCTCTCCAACCAT+AGG - chr1_1:17406060-17406079 Msa0011540:intron 45.0%
ACTGTACGCACAGATATGTC+AGG - chr1_1:17406098-17406117 Msa0011540:intron 45.0%
! TGTTGGGTGCTAAATGGGTT+TGG - chr1_1:17406398-17406417 Msa0011540:intron 45.0%
CATCCCAAAAGCTAGCTCAA+AGG - chr1_1:17406425-17406444 Msa0011540:intron 45.0%
! TTTGGAGTCCCACATTGCTA+AGG + chr1_1:17406494-17406513 None:intergenic 45.0%
GCAATGTGGGAATTGAACTC+AGG + chr1_1:17406556-17406575 None:intergenic 45.0%
GTCATTTCCAGTGCTCCAAT+AGG - chr1_1:17406770-17406789 Msa0011540:intron 45.0%
GCTCCAATAGGTCAAGGATA+TGG - chr1_1:17406782-17406801 Msa0011540:intron 45.0%
GAACTATATCTGTCCACGAC+AGG - chr1_1:17407571-17407590 Msa0011540:intron 45.0%
CCCAAGAAATTCGAGAGTCT+TGG - chr1_1:17407701-17407720 Msa0011540:intron 45.0%
CCAAGCTCTCTAATTCTTGG+AGG + chr1_1:17407735-17407754 None:intergenic 45.0%
CCTCCAAGAATTAGAGAGCT+TGG - chr1_1:17407732-17407751 Msa0011540:intron 45.0%
GAATTATCCACAACAGCCTG+TGG - chr1_1:17407790-17407809 Msa0011540:intron 45.0%
! ACAAGGTGAAACTTTAGGGG+GGG + chr1_1:17407955-17407974 None:intergenic 45.0%
! GACAAGGTGAAACTTTAGGG+GGG + chr1_1:17407956-17407975 None:intergenic 45.0%
GGACAAGGTGAAACTTTAGG+GGG + chr1_1:17407957-17407976 None:intergenic 45.0%
TCATGTTCACCTTGAGGACA+AGG + chr1_1:17407972-17407991 None:intergenic 45.0%
CCCACTTTCACAACAAATCG+AGG + chr1_1:17408031-17408050 None:intergenic 45.0%
GCGGGTAGCACAAAAATTTC+TGG + chr1_1:17408174-17408193 None:intergenic 45.0%
GCATGTATTATGTGTGAGGC+GGG + chr1_1:17408192-17408211 None:intergenic 45.0%
GGCTGCATGTATTATGTGTG+AGG + chr1_1:17408196-17408215 None:intergenic 45.0%
AATACATGCAGCCCTATTGG+TGG - chr1_1:17408203-17408222 Msa0011540:intron 45.0%
GTCGTGTATCATCCACCAAT+AGG + chr1_1:17408218-17408237 None:intergenic 45.0%
! AGTACTGTCACTTGGGAATC+TGG + chr1_1:17408249-17408268 None:intergenic 45.0%
AGATTCCCAAGTGACAGTAC+TGG - chr1_1:17408248-17408267 Msa0011540:CDS 45.0%
! GCCGGTTCAGTATATTTCAG+AGG - chr1_1:17408459-17408478 Msa0011540:intron 45.0%
CTGCTCAATCTCAAACAGAC+AGG + chr1_1:17408528-17408547 None:intergenic 45.0%
CAGTTATGGTAGCCATGGAA+GGG + chr1_1:17408671-17408690 None:intergenic 45.0%
AAAATGGCGCTCAACTTGGT+TGG - chr1_1:17408728-17408747 Msa0011540:intron 45.0%
CGAACACCATAGTACTGTTG+CGG - chr1_1:17408819-17408838 Msa0011540:intron 45.0%
GATAGTCCGCAACAGTACTA+TGG + chr1_1:17408828-17408847 None:intergenic 45.0%
GCAACAATGCGTGATTCCAT+TGG - chr1_1:17409023-17409042 Msa0011540:CDS 45.0%
ACTGTAGGGGAAGTTAATGG+CGG + chr1_1:17409060-17409079 None:intergenic 45.0%
GGGCAAGAAATTCACTGTAG+GGG + chr1_1:17409073-17409092 None:intergenic 45.0%
CAGGGCAAGAAATTCACTGT+AGG + chr1_1:17409075-17409094 None:intergenic 45.0%
CTACAGTGAATTTCTTGCCC+TGG - chr1_1:17409073-17409092 Msa0011540:intron 45.0%
! ATCAGAGCAGTTCTGATCCA+GGG + chr1_1:17409093-17409112 None:intergenic 45.0%
! TATCAGAGCAGTTCTGATCC+AGG + chr1_1:17409094-17409113 None:intergenic 45.0%
CCCAAGAAATTCGAGAGTCT+TGG - chr1_1:17407701-17407720 Msa0011540:intron 45.0%
ACGCTCTCTAATTCTTGGAG+GGG + chr1_1:17409204-17409223 None:intergenic 45.0%
CACGCTCTCTAATTCTTGGA+GGG + chr1_1:17409205-17409224 None:intergenic 45.0%
AGACCACGCTCTCTAATTCT+TGG + chr1_1:17409209-17409228 None:intergenic 45.0%
GAATTATCCACAACAGCCTG+TGG - chr1_1:17407790-17407809 Msa0011540:intron 45.0%
! GGAATGAGATGGTTCTACAC+TGG - chr1_1:17409607-17409626 Msa0011540:intron 45.0%
! TGGTTCTACACTGGTGACAT+AGG - chr1_1:17409616-17409635 Msa0011540:intron 45.0%
GGTTCTACACTGGTGACATA+GGG - chr1_1:17409617-17409636 Msa0011540:intron 45.0%
! GCATGGAGAGTATGTTTCCT+TGG - chr1_1:17409702-17409721 Msa0011540:intron 45.0%
TCTTATTGTCAGCCCCTATG+TGG - chr1_1:17410253-17410272 Msa0011540:intron 45.0%
CTCAGTCCACATTGGAAGAA+TGG - chr1_1:17410336-17410355 Msa0011540:intron 45.0%
TGAAGCCCATTCTTCCAATG+TGG + chr1_1:17410345-17410364 None:intergenic 45.0%
GTAGATGGTACAAACTGTCG+TGG - chr1_1:17410691-17410710 Msa0011540:intron 45.0%
ATGGTACAAACTGTCGTGGA+TGG - chr1_1:17410695-17410714 Msa0011540:intron 45.0%
GTTCGTAGTAGGATCCATCA+TGG + chr1_1:17410781-17410800 None:intergenic 45.0%
TCGCCCACGTCAATCTTTAA+CGG - chr1_1:17410850-17410869 Msa0011540:CDS 45.0%
CCACCGTTAAAGATTGACGT+GGG + chr1_1:17410856-17410875 None:intergenic 45.0%
CCACGTCAATCTTTAACGGT+GGG - chr1_1:17410854-17410873 Msa0011540:CDS 45.0%
! GGAAGCAAAGAAAGCACGTT+TGG - chr1_1:17411025-17411044 Msa0011540:CDS 45.0%
AACAGGAGAGTTGCGAGGAT+GGG + chr1_1:17402719-17402738 None:intergenic 50.0%
CGGAGTTTACTGGAACTCCA+CGG + chr1_1:17402763-17402782 None:intergenic 50.0%
TGGAGTTCCAGTAAACTCCG+CGG - chr1_1:17402763-17402782 Msa0011540:CDS 50.0%
! CAGAAGATTTGCTTCTCCGG+TGG - chr1_1:17402814-17402833 Msa0011540:CDS 50.0%
ATTTGCTTCTCCGGTGGAGA+CGG - chr1_1:17402820-17402839 Msa0011540:CDS 50.0%
! GGAAGGTGTGAGTACATTGG+CGG - chr1_1:17402847-17402866 Msa0011540:CDS 50.0%
! ATGGAGAAGAGTGGTGGTGA+TGG - chr1_1:17402944-17402963 Msa0011540:intron 50.0%
! TGCTAGTGGTTTGGCTGTGT+TGG - chr1_1:17403048-17403067 Msa0011540:intron 50.0%
! GCTAGTGGTTTGGCTGTGTT+GGG - chr1_1:17403049-17403068 Msa0011540:intron 50.0%
TGGGACATGGAAAGGATGAG+AGG - chr1_1:17403068-17403087 Msa0011540:intron 50.0%
GGGACATGGAAAGGATGAGA+GGG - chr1_1:17403069-17403088 Msa0011540:intron 50.0%
CATGGAAAGGATGAGAGGGT+TGG - chr1_1:17403073-17403092 Msa0011540:intron 50.0%
! CCAACAGATGAGGCATCAGA+TGG + chr1_1:17404027-17404046 None:intergenic 50.0%
CCATCTGATGCCTCATCTGT+TGG - chr1_1:17404024-17404043 Msa0011540:intron 50.0%
GATGCCTCATCTGTTGGACA+TGG - chr1_1:17404030-17404049 Msa0011540:intron 50.0%
GCAGCAGTTGGGATACCTAT+AGG - chr1_1:17404896-17404915 Msa0011540:intron 50.0%
CGAACACGGTCAAGAATTGC+TGG + chr1_1:17405022-17405041 None:intergenic 50.0%
CCCGTTGCATTCACCTACAT+TGG + chr1_1:17405483-17405502 None:intergenic 50.0%
ATGTAGGTGAATGCAACGGG+AGG - chr1_1:17405483-17405502 Msa0011540:intron 50.0%
TGCGACCACCAAGAATTGCT+CGG + chr1_1:17405629-17405648 None:intergenic 50.0%
CGCATCCGTTTCATACTGTC+TGG - chr1_1:17405645-17405664 Msa0011540:intron 50.0%
CACCGCCAGACAGTATGAAA+CGG + chr1_1:17405653-17405672 None:intergenic 50.0%
TCCCACATTGCTAAGGTTCC+CGG + chr1_1:17406487-17406506 None:intergenic 50.0%
TCCAGTGCTCCAATAGGTCA+AGG - chr1_1:17406776-17406795 Msa0011540:intron 50.0%
TCCTTGACCTATTGGAGCAC+TGG + chr1_1:17406780-17406799 None:intergenic 50.0%
GGTCTTACAGAGACTTGTGC+TGG - chr1_1:17406803-17406822 Msa0011540:intron 50.0%
CTTACAGAGACTTGTGCTGG+TGG - chr1_1:17406806-17406825 Msa0011540:intron 50.0%
AAGGAAGAGGAGGTCCAACA+CGG + chr1_1:17406865-17406884 None:intergenic 50.0%
!! TAGCTAATCGACTGGCCTGA+AGG - chr1_1:17407351-17407370 Msa0011540:intron 50.0%
CTAATGACTCGCCAATGCCT+CGG - chr1_1:17407385-17407404 Msa0011540:intron 50.0%
TAATGACTCGCCAATGCCTC+GGG - chr1_1:17407386-17407405 Msa0011540:intron 50.0%
CCAATTACAATTTCGCCCCG+AGG + chr1_1:17407405-17407424 None:intergenic 50.0%
CCTCGGGGCGAAATTGTAAT+TGG - chr1_1:17407402-17407421 Msa0011540:intron 50.0%
CGGGGCGAAATTGTAATTGG+TGG - chr1_1:17407405-17407424 Msa0011540:intron 50.0%
GGTGGTCCAAATGTCACTCT+TGG - chr1_1:17407423-17407442 Msa0011540:intron 50.0%
GGCACTTCATGTTCACCTTG+AGG + chr1_1:17407978-17407997 None:intergenic 50.0%
! GCAGTGAACAAGGGAAGTGT+TGG + chr1_1:17408315-17408334 None:intergenic 50.0%
TCTCAAACAGACAGGAACGG+TGG + chr1_1:17408520-17408539 None:intergenic 50.0%
TTTCAACCGTCGATGCTGCA+TGG + chr1_1:17408564-17408583 None:intergenic 50.0%
! TGGAAGGGAAGGCTTTGACA+TGG + chr1_1:17408656-17408675 None:intergenic 50.0%
TGTCAAAGCCTTCCCTTCCA+TGG - chr1_1:17408656-17408675 Msa0011540:intron 50.0%
TATGGTAGCCATGGAAGGGA+AGG + chr1_1:17408667-17408686 None:intergenic 50.0%
GCAGTTATGGTAGCCATGGA+AGG + chr1_1:17408672-17408691 None:intergenic 50.0%
ACAGGCAGTTATGGTAGCCA+TGG + chr1_1:17408676-17408695 None:intergenic 50.0%
ATGGTGAAGACGTATTCGGG+TGG + chr1_1:17408755-17408774 None:intergenic 50.0%
GCATTGTTGCACTGGAACGT+GGG + chr1_1:17409013-17409032 None:intergenic 50.0%
GGAATCACGCATTGTTGCAC+TGG + chr1_1:17409021-17409040 None:intergenic 50.0%
TGCGTGATTCCATTGGTCCT+CGG - chr1_1:17409030-17409049 Msa0011540:CDS 50.0%
AAGTTAATGGCGGTTTCCCG+AGG + chr1_1:17409050-17409069 None:intergenic 50.0%
CCACGCTCTCTAATTCTTGG+AGG + chr1_1:17409206-17409225 None:intergenic 50.0%
CCTCCAAGAATTAGAGAGCG+TGG - chr1_1:17409203-17409222 Msa0011540:CDS 50.0%
TCTACACTGGTGACATAGGG+AGG - chr1_1:17409620-17409639 Msa0011540:intron 50.0%
TGTGGCTTCTCAGTCCACAT+TGG - chr1_1:17410328-17410347 Msa0011540:intron 50.0%
GGTGCATGCATCGCTAGTAA+AGG - chr1_1:17410427-17410446 Msa0011540:intron 50.0%
CCCACGTCAATCTTTAACGG+TGG - chr1_1:17410853-17410872 Msa0011540:CDS 50.0%
CCCACCGTTAAAGATTGACG+TGG + chr1_1:17410857-17410876 None:intergenic 50.0%
AGCAGTGACTAAGCCAGACT+CGG + chr1_1:17411102-17411121 None:intergenic 50.0%
TGCTCTCAAGCTCAAGAGAG+AGG - chr1_1:17411121-17411140 Msa0011540:CDS 50.0%
! TGCGAGGATGGGGAGTATGA+TGG + chr1_1:17402708-17402727 None:intergenic 55.0%
ACAGGAGAGTTGCGAGGATG+GGG + chr1_1:17402718-17402737 None:intergenic 55.0%
GAACAGGAGAGTTGCGAGGA+TGG + chr1_1:17402720-17402739 None:intergenic 55.0%
ACTGGAACTCCACGGCGTTT+GGG + chr1_1:17402755-17402774 None:intergenic 55.0%
TACTGGAACTCCACGGCGTT+TGG + chr1_1:17402756-17402775 None:intergenic 55.0%
TGATCGTCCGCGGAGTTTAC+TGG + chr1_1:17402773-17402792 None:intergenic 55.0%
GTAAACTCCGCGGACGATCA+AGG - chr1_1:17402773-17402792 Msa0011540:CDS 55.0%
ATCAAGGCGGTGTGACAGTG+CGG - chr1_1:17402789-17402808 Msa0011540:CDS 55.0%
!! GAGAAGAGTGGTGGTGATGG+TGG - chr1_1:17402947-17402966 Msa0011540:intron 55.0%
GGTTTGGCTGTGTTGGGACA+TGG - chr1_1:17403055-17403074 Msa0011540:intron 55.0%
GGCTGTGTTGGGACATGGAA+AGG - chr1_1:17403060-17403079 Msa0011540:intron 55.0%
CCAGCCATGTCCAACAGATG+AGG + chr1_1:17404037-17404056 None:intergenic 55.0%
CCTCATCTGTTGGACATGGC+TGG - chr1_1:17404034-17404053 Msa0011540:intron 55.0%
ACTGCAACATCAGCTGGGAG+AGG + chr1_1:17404123-17404142 None:intergenic 55.0%
!! ATGGAAGCTGGTTTGGAGCC+TGG - chr1_1:17405559-17405578 Msa0011540:intron 55.0%
!! TGGAAGCTGGTTTGGAGCCT+GGG - chr1_1:17405560-17405579 Msa0011540:intron 55.0%
GGGATTGGAGAAGGCTCTCT+GGG - chr1_1:17405581-17405600 Msa0011540:intron 55.0%
CCCACATTGCTAAGGTTCCC+GGG + chr1_1:17406486-17406505 None:intergenic 55.0%
CCCGGGAACCTTAGCAATGT+GGG - chr1_1:17406483-17406502 Msa0011540:CDS 55.0%
ATTGAACTCAGGCCCACGCT+AGG + chr1_1:17406545-17406564 None:intergenic 55.0%
GATACGTCTGTTGGCCGTGT+TGG - chr1_1:17406848-17406867 Msa0011540:intron 55.0%
!! CTAATCGACTGGCCTGAAGG+TGG - chr1_1:17407354-17407373 Msa0011540:intron 55.0%
AATGACTCGCCAATGCCTCG+GGG - chr1_1:17407387-17407406 Msa0011540:intron 55.0%
ACAATTTCGCCCCGAGGCAT+TGG + chr1_1:17407399-17407418 None:intergenic 55.0%
AGGGTAACCACAGGCTGTTG+TGG + chr1_1:17407800-17407819 None:intergenic 55.0%
! TGAACATGAAGTGCCCCCCA+GGG - chr1_1:17407983-17408002 Msa0011540:intron 55.0%
TTAGGCTCCAATGGGACCCT+GGG + chr1_1:17408002-17408021 None:intergenic 55.0%
ATTAGGCTCCAATGGGACCC+TGG + chr1_1:17408003-17408022 None:intergenic 55.0%
! AAGGGACCATGCAGCATCGA+CGG - chr1_1:17408555-17408574 Msa0011540:intron 55.0%
CGCATTGTTGCACTGGAACG+TGG + chr1_1:17409014-17409033 None:intergenic 55.0%
GCGTGATTCCATTGGTCCTC+GGG - chr1_1:17409031-17409050 Msa0011540:CDS 55.0%
AGGGTAACCACAGGCTGTTG+TGG + chr1_1:17407800-17407819 None:intergenic 55.0%
ACTGTCGTGGATGGCTTACG+TGG - chr1_1:17410704-17410723 Msa0011540:intron 55.0%
GCAGTGACTAAGCCAGACTC+GGG + chr1_1:17411101-17411120 None:intergenic 55.0%
GGCCGTCAGAAAGACTTTCC+AGG - chr1_1:17411142-17411161 Msa0011540:CDS 55.0%
TGCGGAACAGGAGAGTTGCG+AGG + chr1_1:17402724-17402743 None:intergenic 60.0%
TGGGGTGGTTAGTGCGGAAC+AGG + chr1_1:17402736-17402755 None:intergenic 60.0%
! GGCGTTTGGGGTGGTTAGTG+CGG + chr1_1:17402742-17402761 None:intergenic 60.0%
ACTAACCACCCCAAACGCCG+TGG - chr1_1:17402743-17402762 Msa0011540:exon 60.0%
CTGGAACTCCACGGCGTTTG+GGG + chr1_1:17402754-17402773 None:intergenic 60.0%
AACTCCGCGGACGATCAAGG+CGG - chr1_1:17402776-17402795 Msa0011540:CDS 60.0%
TTCTCCGGTGGAGACGGCAT+GGG - chr1_1:17402826-17402845 Msa0011540:CDS 60.0%
!! GGAAGCTGGTTTGGAGCCTG+GGG - chr1_1:17405561-17405580 Msa0011540:intron 60.0%
!! CTGGTTTGGAGCCTGGGGAT+TGG - chr1_1:17405566-17405585 Msa0011540:intron 60.0%
TGGAGCCTGGGGATTGGAGA+AGG - chr1_1:17405572-17405591 Msa0011540:intron 60.0%
GAGAGCCTTCTCCAATCCCC+AGG + chr1_1:17405580-17405599 None:intergenic 60.0%
GGGGATTGGAGAAGGCTCTC+TGG - chr1_1:17405580-17405599 Msa0011540:intron 60.0%
GCCCGGGAACCTTAGCAATG+TGG - chr1_1:17406482-17406501 Msa0011540:CDS 60.0%
! GTGAACATGAAGTGCCCCCC+AGG - chr1_1:17407982-17408001 Msa0011540:intron 60.0%
TAGGCTCCAATGGGACCCTG+GGG + chr1_1:17408001-17408020 None:intergenic 60.0%
GATCCATGGACACCCGAGTC+TGG - chr1_1:17411086-17411105 Msa0011540:CDS 60.0%
AAGCCAGACTCGGGTGTCCA+TGG + chr1_1:17411092-17411111 None:intergenic 60.0%
GAACTCCACGGCGTTTGGGG+TGG + chr1_1:17402751-17402770 None:intergenic 65.0%
CACACCGCCTTGATCGTCCG+CGG + chr1_1:17402783-17402802 None:intergenic 65.0%
CTTCTCCGGTGGAGACGGCA+TGG - chr1_1:17402825-17402844 Msa0011540:CDS 65.0%
CCTTCCCATGCCGTCTCCAC+CGG + chr1_1:17402833-17402852 None:intergenic 65.0%
TCTGGCGGTGCTCCCCTTTC+TGG - chr1_1:17405663-17405682 Msa0011540:intron 65.0%
AGCCACCCTCACACCTAGCG+TGG - chr1_1:17406529-17406548 Msa0011540:CDS 65.0%
GCCACCCTCACACCTAGCGT+GGG - chr1_1:17406530-17406549 Msa0011540:CDS 65.0%
CAGGCCCACGCTAGGTGTGA+GGG + chr1_1:17406537-17406556 None:intergenic 65.0%
TCAGGCCCACGCTAGGTGTG+AGG + chr1_1:17406538-17406557 None:intergenic 65.0%
AGGCTCCAATGGGACCCTGG+GGG + chr1_1:17408000-17408019 None:intergenic 65.0%
GGCGGTTTCCCGAGGACCAA+TGG + chr1_1:17409042-17409061 None:intergenic 65.0%
CCGGTGGAGACGGCATGGGA+AGG - chr1_1:17402830-17402849 Msa0011540:CDS 70.0%
GCCCACGCTAGGTGTGAGGG+TGG + chr1_1:17406534-17406553 None:intergenic 70.0%
AGTGCCCCCCAGGGTCCCAT+TGG - chr1_1:17407992-17408011 Msa0011540:intron 70.0%
GGCTCCAATGGGACCCTGGG+GGG + chr1_1:17407999-17408018 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 17402554 17411387 17402554 ID=Msa0011540;Name=Msa0011540
chr1_1 mRNA 17402554 17411387 17402554 ID=Msa0011540-mRNA-1;Parent=Msa0011540;Name=Msa0011540-mRNA-1;_AED=0.02;_eAED=0.02;_QI=132|1|1|1|1|1|11|194|697
chr1_1 exon 17402554 17402915 17402554 ID=Msa0011540-mRNA-1:exon:6350;Parent=Msa0011540-mRNA-1
chr1_1 exon 17403493 17403699 17403493 ID=Msa0011540-mRNA-1:exon:6349;Parent=Msa0011540-mRNA-1
chr1_1 exon 17404212 17404346 17404212 ID=Msa0011540-mRNA-1:exon:6348;Parent=Msa0011540-mRNA-1
chr1_1 exon 17406456 17406587 17406456 ID=Msa0011540-mRNA-1:exon:6347;Parent=Msa0011540-mRNA-1
chr1_1 exon 17407043 17407160 17407043 ID=Msa0011540-mRNA-1:exon:6346;Parent=Msa0011540-mRNA-1
chr1_1 exon 17408223 17408452 17408223 ID=Msa0011540-mRNA-1:exon:6345;Parent=Msa0011540-mRNA-1
chr1_1 exon 17408881 17409054 17408881 ID=Msa0011540-mRNA-1:exon:6344;Parent=Msa0011540-mRNA-1
chr1_1 exon 17409177 17409308 17409177 ID=Msa0011540-mRNA-1:exon:6343;Parent=Msa0011540-mRNA-1
chr1_1 exon 17409762 17410025 17409762 ID=Msa0011540-mRNA-1:exon:6342;Parent=Msa0011540-mRNA-1
chr1_1 exon 17410156 17410236 17410156 ID=Msa0011540-mRNA-1:exon:6341;Parent=Msa0011540-mRNA-1
chr1_1 exon 17410803 17411387 17410803 ID=Msa0011540-mRNA-1:exon:6340;Parent=Msa0011540-mRNA-1
chr1_1 five_prime_UTR 17411256 17411387 17411256 ID=Msa0011540-mRNA-1:five_prime_utr;Parent=Msa0011540-mRNA-1
chr1_1 CDS 17410803 17411255 17410803 ID=Msa0011540-mRNA-1:cds;Parent=Msa0011540-mRNA-1
chr1_1 CDS 17410156 17410236 17410156 ID=Msa0011540-mRNA-1:cds;Parent=Msa0011540-mRNA-1
chr1_1 CDS 17409762 17410025 17409762 ID=Msa0011540-mRNA-1:cds;Parent=Msa0011540-mRNA-1
chr1_1 CDS 17409177 17409308 17409177 ID=Msa0011540-mRNA-1:cds;Parent=Msa0011540-mRNA-1
chr1_1 CDS 17408881 17409054 17408881 ID=Msa0011540-mRNA-1:cds;Parent=Msa0011540-mRNA-1
chr1_1 CDS 17408223 17408452 17408223 ID=Msa0011540-mRNA-1:cds;Parent=Msa0011540-mRNA-1
chr1_1 CDS 17407043 17407160 17407043 ID=Msa0011540-mRNA-1:cds;Parent=Msa0011540-mRNA-1
chr1_1 CDS 17406456 17406587 17406456 ID=Msa0011540-mRNA-1:cds;Parent=Msa0011540-mRNA-1
chr1_1 CDS 17404212 17404346 17404212 ID=Msa0011540-mRNA-1:cds;Parent=Msa0011540-mRNA-1
chr1_1 CDS 17403493 17403699 17403493 ID=Msa0011540-mRNA-1:cds;Parent=Msa0011540-mRNA-1
chr1_1 CDS 17402748 17402915 17402748 ID=Msa0011540-mRNA-1:cds;Parent=Msa0011540-mRNA-1
chr1_1 three_prime_UTR 17402554 17402747 17402554 ID=Msa0011540-mRNA-1:three_prime_utr;Parent=Msa0011540-mRNA-1
Gene Sequence

>Msa0011540

ATGAATCCCTACATTGTCACCATCATACTCCCCATCCTCGCAACTCTCCTGTTCCGCACTAACCACCCCAAACGCCGTGGAGTTCCAGTAAACTCCGCGGACGATCAAGGCGGTGTGACAGTGCGGAACAGAAGATTTGCTTCTCCGGTGGAGACGGCATGGGAAGGTGTGAGTACATTGGCGGAATTGTTTGAAGAAGCATGCAGGAAGCATACGGAGAGATTACTGTTGGGAACAAGAGTGGTTGTTTCGAAGGAAATGGAGAAGAGTGGTGGTGATGGTGGAAAAGTTTTTGAGAAAGTTGAATTGGGTGAGTATGAATGGTTATCGTATGATGAAGCTTTTGATGGTGTTGTGAAGTTTGCTAGTGGTTTGGCTGTGTTGGGACATGGAAAGGATGAGAGGGTTGGGATTTTTGCTGATACTAGGGTTGAATGGTTCCTTGCTCTTCAGGGTTGTTTCAGGCGAAATGTGACAGTTGTAACTATGTATGCATCATTGGGAGAGGAAGCTTTATGTCACTCATTGAATGAGACAGAGGTCACGACAGTAATTTGTGGACAGAAAGAATTGAAAACACTTATAAATATTAGTGGACAACTTGACTCAGTGAAACGTGTGATATGCATGGATGACGATATCCCATCTGATGCCTCATCTGTTGGACATGGCTGGACAATCATATCCTTCGCAGATGTTAAGCGACTTGGTAAAGAAAATCCTGTTGATGCTGATTTACCTCTCCCAGCTGATGTTGCAGTTATCATGTATACAAGTGGAAGTACTGGATTACCTAAGGGTGTGATGATGACACATGCTAATGTTTTAGCTACACTCTCTGCTGTGAAGATGATTGTTCCAAAACTTGAGAAAAAGGATGTATATCTAGCATACTTGCCAATGGCTCATATCCTTGAACTTGCAGCTGAGAATTTGATGGCAGCAGTTGGGATACCTATAGGATATGGATCTCCTTTGACCCTCACAGATACATCAAGCAAGATAAAGAAAGGAACAAAGGGGGATGCTACTGTGTTGATGCCTACTTTATTGGCTGCTGTACCAGCAATTCTTGACCGTGTTCGTGATGGTGTGTTCAAGAAGGTGAATGCAACGGGAGGATTACCCAAAAAGTTGTTTTATTTAGCCTATGAGAGGAGGTTGAAAGCAGTTAATGGAAGCTGGTTTGGAGCCTGGGGATTGGAGAAGGCTCTCTGGGATTTTCTTGTGTTTAAAAAAATCCGAGCAATTCTTGGTGGTCGCATCCGTTTCATACTGTCTGGCGGTGCTCCCCTTTCTGGTGATACTCAGCAGTTCATCAATATCTGTCTTGGTGCTCCAATAGGTCAAGGATATGGTCTTACAGAGACTTGTGCTGGTGGAACATTCTCTGATTTTGATGATACGTCTGTTGGCCGTGTTGGACCTCCTCTTCCTTGCTCATTTATTAAGCTAATCGACTGGCCTGAAGGTGGATATTTAACTAATGACTCGCCAATGCCTCGGGGCGAAATTGTAATTGGTGGTCCAAATGTCACTCTTGGTTACTTCAAGAATGAAGAAAAGACAAAAGAATCATACAAGGTTGATGAAAAAGGAATGAGATGGTTCTACACTGGTGACATAGGGAGGTTTCATCAAGATGGTTGCCTAGAAATCGTTGATCGTAAAAAGGACATTGTTAAACTGCAGCATGGAGAGTATGTTTCCTTGGGAAAGGTTGAGGCAGCTCTTATTGTCAGCCCCTATGTGGACAATATAATGTTGCATGCTGATCCTTTCCATAGTTATTGTGTGGCACTTGTTGTGGCTTCTCAGTCCACATTGGAAGAATGGGCTTCAAATCAAGGAATTCCTTATTCAGGTTTTTCAGAACTTTGCTCTAAAGAAGAAAGCATCAAGGAGGTGCATGCATCGCTAGTAAAGGAAGCAAAGAAAGCACGTTTGGAGAAATTTGAGATTCCAGCAAGAATTAAATTGCTTTCTGATCCATGGACACCCGAGTCTGGCTTAGTCACTGCTGCTCTCAAGCTCAAGAGAGAGGCCGTCAGAAAGACTTTCCAGGAAGAACTTCTGAAGTTATACGCTTCATAG
Protein sequence

>Msa0011540

MNPYIVTIILPILATLLFRTNHPKRRGVPVNSADDQGGVTVRNRRFASPVETAWEGVSTLAELFEEACRKHTERLLLGTRVVVSKEMEKSGGDGGKVFEKVELGEYEWLSYDEAFDGVVKFASGLAVLGHGKDERVGIFADTRVEWFLALQGCFRRNVTVVTMYASLGEEALCHSLNETEVTTVICGQKELKTLINISGQLDSVKRVICMDDDIPSDASSVGHGWTIISFADVKRLGKENPVDADLPLPADVAVIMYTSGSTGLPKGVMMTHANVLATLSAVKMIVPKLEKKDVYLAYLPMAHILELAAENLMAAVGIPIGYGSPLTLTDTSSKIKKGTKGDATVLMPTLLAAVPAILDRVRDGVFKKVNATGGLPKKLFYLAYERRLKAVNGSWFGAWGLEKALWDFLVFKKIRAILGGRIRFILSGGAPLSGDTQQFINICLGAPIGQGYGLTETCAGGTFSDFDDTSVGRVGPPLPCSFIKLIDWPEGGYLTNDSPMPRGEIVIGGPNVTLGYFKNEEKTKESYKVDEKGMRWFYTGDIGRFHQDGCLEIVDRKKDIVKLQHGEYVSLGKVEAALIVSPYVDNIMLHADPFHSYCVALVVASQSTLEEWASNQGIPYSGFSELCSKEESIKEVHASLVKEAKKARLEKFEIPARIKLLSDPWTPESGLVTAALKLKREAVRKTFQEELLKLYAS*