AlfalfaGEDB | Msa0379360

M. sativa cultivar zhongmu-4 / Msa0379360

KEGG: K01875
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004828 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006434 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0090567 GO:0099402 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576
PFAM: PF02403.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0379360	XP_003602834.1	95.777	521	13	3	1	520	34	546	0.0	1025

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0379360	sp\|Q8RWT8\|SYSM_ARATH	72.673	505	133	4	18	519	10	512	0.0	751

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0379360	G7J3Z0	95.777	521	13	3	1	520	34	546	0.0	1025

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001510	Msa0379360	0.841819	3.771552e-58	-8.615850e-47
Msa0001540	Msa0379360	0.817628	2.987817e-52	-8.615850e-47
Msa0002060	Msa0379360	0.830587	2.700490e-55	-8.615850e-47
Msa0002690	Msa0379360	0.803453	3.461237e-49	-8.615850e-47
Msa0004180	Msa0379360	0.829963	3.836185e-55	-8.615850e-47
Msa0005190	Msa0379360	0.800972	1.121489e-48	-8.615850e-47
Msa0007570	Msa0379360	0.803073	4.149318e-49	-8.615850e-47
Msa0011540	Msa0379360	0.810216	1.286918e-50	-8.615850e-47
Msa0015720	Msa0379360	0.814021	1.904888e-51	-8.615850e-47
Msa0016110	Msa0379360	0.808859	2.517458e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0379360	MtrunA17_Chr3g0132361	95.777	521	13	3	1	520	34	546	0.0	1025
Msa0379360	MtrunA17_Chr1g0191801	36.041	394	228	9	124	512	52	426	1.21e-74	243
Msa0379360	MtrunA17_Chr7g0225211	35.374	147	62	5	368	512	182	297	3.61e-15	77.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0379360	AT1G11870.1	72.673	505	131	4	18	519	10	510	0.0	752
Msa0379360	AT1G11870.2	72.673	505	133	4	18	519	10	512	0.0	751
Msa0379360	AT1G11870.6	80.423	378	74	0	142	519	1	378	0.0	642
Msa0379360	AT1G11870.4	69.767	430	123	5	18	442	10	437	0.0	607
Msa0379360	AT1G11870.5	70.616	422	119	4	18	436	10	429	0.0	606
Msa0379360	AT1G11870.3	69.054	391	116	4	18	405	10	398	0.0	542
Msa0379360	AT5G27470.1	36.869	396	230	8	125	512	46	429	2.19e-78	253

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Find 139 sgRNAs with CRISPR-Local

Find 573 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCCCTTTGTTTATTAT+TGG	0.144971	3_1:-80473007	None:intergenic
AAATACCGTCTTCCTTATTG+TGG	0.516317	3_1:-80467406	None:intergenic
AACGTGTGAACAAACTGTGG+CGG	0.686971	3_1:-80472587	None:intergenic
AAGACATATTCTCATCCCTA+GGG	0.624425	3_1:+80470511	Msa0379360:CDS
AAGCGCGAAGAGGAACATGT+GGG	0.696487	3_1:-80466085	None:intergenic
AAGCTACTATAGACTTCAAG+TGG	0.591029	3_1:+80466379	Msa0379360:CDS
AATAATCACTCTCTTCTGGG+CGG	0.726189	3_1:-80470461	None:intergenic
AATTGTACAAAAGAATGTTA+TGG	0.399697	3_1:-80472758	None:intergenic
AATTTGTGGGAATGAATGGT+TGG	0.587606	3_1:-80466139	None:intergenic
ACAAAATAATCTTATATCAG+AGG	0.586392	3_1:+80472869	Msa0379360:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAGAGAATTAAGAGAAGA+AGG	-	chr3_1:80466267-80466286	None:intergenic	30.0%
AAGTTATCCAGGAAAAATCA+TGG	+	chr3_1:80466845-80466864	Msa0379360:intron	30.0%
AATAAGCTGAAAGTAGCTTA+TGG	+	chr3_1:80466869-80466888	Msa0379360:intron	30.0%
ACCATTTGTTTGTTTGTGTT+TGG	+	chr3_1:80467200-80467219	Msa0379360:intron	30.0%
CCATTTGTTTGTTTGTGTTT+GGG	+	chr3_1:80467201-80467220	Msa0379360:intron	30.0%
TCAGAGAAGAAAGAAATGAA+TGG	-	chr3_1:80467448-80467467	None:intergenic	30.0%
ACCTGGTACTCTTATTATTA+TGG	+	chr3_1:80467792-80467811	Msa0379360:intron	30.0%
TGCCAAAGAATCAATACTTA+GGG	-	chr3_1:80469269-80469288	None:intergenic	30.0%
AAAGGAATGGAAAAAGGAAT+AGG	+	chr3_1:80468159-80468178	Msa0379360:intron	30.0%
ATAGGAATTGATGAATTTCC+TGG	-	chr3_1:80468239-80468258	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	80465999	80473034	80465999	ID=Msa0379360;Name=Msa0379360
chr3_1	mRNA	80465999	80473034	80465999	ID=Msa0379360-mRNA-1;Parent=Msa0379360;Name=Msa0379360-mRNA-1;_AED=0.13;_eAED=0.13;_QI=26\|1\|1\|1\|0.88\|1\|10\|286\|520
chr3_1	exon	80465999	80466253	80465999	ID=Msa0379360-mRNA-1:exon:20075;Parent=Msa0379360-mRNA-1
chr3_1	exon	80466361	80466509	80466361	ID=Msa0379360-mRNA-1:exon:20076;Parent=Msa0379360-mRNA-1
chr3_1	exon	80467081	80467174	80467081	ID=Msa0379360-mRNA-1:exon:20077;Parent=Msa0379360-mRNA-1
chr3_1	exon	80467274	80467422	80467274	ID=Msa0379360-mRNA-1:exon:20078;Parent=Msa0379360-mRNA-1
chr3_1	exon	80467550	80467642	80467550	ID=Msa0379360-mRNA-1:exon:20079;Parent=Msa0379360-mRNA-1
chr3_1	exon	80469641	80469820	80469641	ID=Msa0379360-mRNA-1:exon:20080;Parent=Msa0379360-mRNA-1
chr3_1	exon	80470039	80470205	80470039	ID=Msa0379360-mRNA-1:exon:20081;Parent=Msa0379360-mRNA-1
chr3_1	exon	80470410	80470544	80470410	ID=Msa0379360-mRNA-1:exon:20082;Parent=Msa0379360-mRNA-1
chr3_1	exon	80470632	80470725	80470632	ID=Msa0379360-mRNA-1:exon:20083;Parent=Msa0379360-mRNA-1
chr3_1	exon	80472476	80473034	80472476	ID=Msa0379360-mRNA-1:exon:20084;Parent=Msa0379360-mRNA-1
chr3_1	five_prime_UTR	80465999	80466024	80465999	ID=Msa0379360-mRNA-1:five_prime_utr;Parent=Msa0379360-mRNA-1
chr3_1	CDS	80466025	80466253	80466025	ID=Msa0379360-mRNA-1:cds;Parent=Msa0379360-mRNA-1
chr3_1	CDS	80466361	80466509	80466361	ID=Msa0379360-mRNA-1:cds;Parent=Msa0379360-mRNA-1
chr3_1	CDS	80467081	80467174	80467081	ID=Msa0379360-mRNA-1:cds;Parent=Msa0379360-mRNA-1
chr3_1	CDS	80467274	80467422	80467274	ID=Msa0379360-mRNA-1:cds;Parent=Msa0379360-mRNA-1
chr3_1	CDS	80467550	80467642	80467550	ID=Msa0379360-mRNA-1:cds;Parent=Msa0379360-mRNA-1
chr3_1	CDS	80469641	80469820	80469641	ID=Msa0379360-mRNA-1:cds;Parent=Msa0379360-mRNA-1
chr3_1	CDS	80470039	80470205	80470039	ID=Msa0379360-mRNA-1:cds;Parent=Msa0379360-mRNA-1
chr3_1	CDS	80470410	80470544	80470410	ID=Msa0379360-mRNA-1:cds;Parent=Msa0379360-mRNA-1
chr3_1	CDS	80470632	80470725	80470632	ID=Msa0379360-mRNA-1:cds;Parent=Msa0379360-mRNA-1
chr3_1	CDS	80472476	80472748	80472476	ID=Msa0379360-mRNA-1:cds;Parent=Msa0379360-mRNA-1
chr3_1	three_prime_UTR	80472749	80473034	80472749	ID=Msa0379360-mRNA-1:three_prime_utr;Parent=Msa0379360-mRNA-1

Gene Sequence

>Msa0379360

ATGGATTCACATTGTTATCTTCACAGAACAACCTTCCAAACTCTCAAACTCAGTTCAACTCCCACATGTTCCTCTTCGCGCTTCCTTTCTCCTCCACTTCACAAAACCAAAATTCCAACCATTCATTCCCACAAATTTCCATTTCCACGCCTCACCAAAGCTCTCTCCACCTCTTCCGCCACCGTTCAAACATCTCCGACCACCACCACCACCATCTCCGACGACCAAGGTGGAAAACCTCAATGGAAAGCTACTATAGACTTCAAGTGGATCAAGGATAACAAAGAAACTGTTGCTGTTAATATAAAGAACCGCAATTCTGATGCTAATTTGGAACTCATTCTTCATCTTTATGATAAATTGTTTATTCTTCAGAAGGAAGTTGAGAGAGTTCGTGGAGAGAGAAATGCAGTGGCTAATAAGATGAAGGGAAAATTAGAACCATCTGAGCGCCAAACACTAACTGAACAAGGGAAGAATTTGAAGGAGGGACTTACTGCTTTGGAAGAAGACCTGGTGAAGCTTAATGATGAGCTTCAACGGGAGGCGCAGTGTATACCAAACATGACTCATCCAGATGCTCCTATAGGAGGGGAGGATTCTTCCACAATAAGGAAGACGGTTGGCAGCTCTCCTAAATTTAGTTTTCCTGTCAAGGATCATCTCCAACTTGGAAAGGAACTTGATCTTTTTGATTTTGATGCTGCTGCAGAGGTCAGTGGTTCAAAGTTCTACTACCTGAAAAATGAAGCAGTTCTATTAGAGATGGCTCTTCTCAATTGGACGCTCTCAGAAGTGATGAAGAGAGGCTTTACTCCACTAACAACACCTGAAATTGTACGGTCCTCTGTTGTTGAAAAATGTGGGTTCCAACCTCGTGCGAAAAATACCCAGGTTTATTCTATCGATGACAGTGACCAATGCCTTATCGGCACTGCAGAGATTCCTGTTGGGGGACTTCATATGGATTCTATACTTGCTGACTCAATGTTGCCCTTAAAATATGTCGCATTTTCTCATTGTTTCCGTACCGAGGCAGGTGCTGCTGGCACTGCAACAAGAGGTCTTTATCGTGTCCACCAATTCAGCAAAATTGAAATGTTTATTTTCTGCCGCCCAGAAGAGAGTGATTATTACCACGAAGAACTTATTAAAATTGAAGAAGACATATTCTCATCCCTAGGGTTACATTTCAAAACTTTGGATATGGCCTCCGAAGATTTAGGCGCACCTGCTTATCGTAAATTTGATGTTGAGGCATGGATGCCTGGTTTAGAACGGTTTGGTGAGATCTCAAGCGCATCAAATTGCACAGACTATCAGAGCCGTCGATTGGGAATCCGGTATCGTCCAACAGAAGTACTTGTCCCGGGTCCAAAAAAATCTAAAGGCAATCTCGCTCCGCCACAGTTTGTTCACACGTTAAACGCAACAGCATGTGCTGTACCACGAATGATTATATGTCTACTTGAGAATTACCAACAAGAAGACGGATCTGTCCTTATTCCGGAGCCATTGAGGCCATTCATGGGAGGGCTTGATATTATCACAAGAAAATCATGA

Protein sequence

>Msa0379360

MDSHCYLHRTTFQTLKLSSTPTCSSSRFLSPPLHKTKIPTIHSHKFPFPRLTKALSTSSATVQTSPTTTTTISDDQGGKPQWKATIDFKWIKDNKETVAVNIKNRNSDANLELILHLYDKLFILQKEVERVRGERNAVANKMKGKLEPSERQTLTEQGKNLKEGLTALEEDLVKLNDELQREAQCIPNMTHPDAPIGGEDSSTIRKTVGSSPKFSFPVKDHLQLGKELDLFDFDAAAEVSGSKFYYLKNEAVLLEMALLNWTLSEVMKRGFTPLTTPEIVRSSVVEKCGFQPRAKNTQVYSIDDSDQCLIGTAEIPVGGLHMDSILADSMLPLKYVAFSHCFRTEAGAAGTATRGLYRVHQFSKIEMFIFCRPEESDYYHEELIKIEEDIFSSLGLHFKTLDMASEDLGAPAYRKFDVEAWMPGLERFGEISSASNCTDYQSRRLGIRYRPTEVLVPGPKKSKGNLAPPQFVHTLNATACAVPRMIICLLENYQQEDGSVLIPEPLRPFMGGLDIITRKS*