AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0379360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0379360 MtrunA17_Chr3g0132361 95.777 521 13 3 1 520 34 546 0.0 1025
Msa0379360 MtrunA17_Chr1g0191801 36.041 394 228 9 124 512 52 426 1.21e-74 243
Msa0379360 MtrunA17_Chr7g0225211 35.374 147 62 5 368 512 182 297 3.61e-15 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0379360 AT1G11870.1 72.673 505 131 4 18 519 10 510 0.0 752
Msa0379360 AT1G11870.2 72.673 505 133 4 18 519 10 512 0.0 751
Msa0379360 AT1G11870.6 80.423 378 74 0 142 519 1 378 0.0 642
Msa0379360 AT1G11870.4 69.767 430 123 5 18 442 10 437 0.0 607
Msa0379360 AT1G11870.5 70.616 422 119 4 18 436 10 429 0.0 606
Msa0379360 AT1G11870.3 69.054 391 116 4 18 405 10 398 0.0 542
Msa0379360 AT5G27470.1 36.869 396 230 8 125 512 46 429 2.19e-78 253

Find 139 sgRNAs with CRISPR-Local

Find 573 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGCAATTCTGATGCTAATT+TGG 0.142845 3_1:+80466443 Msa0379360:CDS
AAACTCCCTTTGTTTATTAT+TGG 0.144971 3_1:-80473007 None:intergenic
GGAATGAATGGTTGGAATTT+TGG 0.195780 3_1:-80466131 None:intergenic
TGGTAATAATCACTCTCTTC+TGG 0.211142 3_1:-80470465 None:intergenic
TTGAACTGAGTTTGAGAGTT+TGG 0.223344 3_1:-80466060 None:intergenic
CAATTTCTTTAAATTGAAAA+TGG 0.236059 3_1:+80472828 Msa0379360:three_prime_UTR
TTGACAGGAAAACTAAATTT+AGG 0.239752 3_1:-80467562 None:intergenic
ACAGAGGACCGTACAATTTC+AGG 0.244895 3_1:-80469755 None:intergenic
GCCTCAATGGCTCCGGAATA+AGG 0.294083 3_1:-80472685 None:intergenic
TTTCTGCAGAACTTTGGATA+TGG 0.351141 3_1:+80470623 Msa0379360:intron
GACAGTGACCAATGCCTTAT+CGG 0.354411 3_1:+80470054 Msa0379360:CDS
GACCTTGTTCAGTTAGTGTT+TGG 0.373400 3_1:-80467155 None:intergenic
AGAGCCGTCGATTGGGAATC+CGG 0.381628 3_1:+80472507 Msa0379360:CDS
TAGAGATGGCTCTTCTCAAT+TGG 0.383510 3_1:+80469687 Msa0379360:CDS
GATATGGCCTCCGAAGATTT+AGG 0.392610 3_1:+80470639 Msa0379360:CDS
AATTGTACAAAAGAATGTTA+TGG 0.399697 3_1:-80472758 None:intergenic
GGTAATAATCACTCTCTTCT+GGG 0.410820 3_1:-80470464 None:intergenic
ACAATTTCAGGTGTTGTTAG+TGG 0.411237 3_1:-80469743 None:intergenic
AGACGGATCTGTCCTTATTC+CGG 0.415683 3_1:+80472673 Msa0379360:CDS
TCCCCTCCTATAGGAGCATC+TGG 0.416543 3_1:-80467375 None:intergenic
CGTACCGAGGCAGGTGCTGC+TGG 0.422945 3_1:+80470171 Msa0379360:CDS
GGGAGGATTCTTCCACAATA+AGG 0.425570 3_1:+80467394 Msa0379360:CDS
TGAGCATTTCTGCAGAACTT+TGG 0.427246 3_1:+80470617 Msa0379360:intron
GGAGCCATTGAGGCCATTCA+TGG 0.427597 3_1:+80472694 Msa0379360:CDS
CATTGTTTCCGTACCGAGGC+AGG 0.428807 3_1:+80470162 Msa0379360:CDS
ACTCATCCAGATGCTCCTAT+AGG 0.434401 3_1:+80467369 Msa0379360:CDS
CCTCCCATGAATGGCCTCAA+TGG 0.436697 3_1:-80472698 None:intergenic
GATCAAGTTCCTTTCCAAGT+TGG 0.436930 3_1:-80467594 None:intergenic
TGGAAATTTGTGGGAATGAA+TGG 0.438553 3_1:-80466143 None:intergenic
GCTTTGGTGAGGCGTGGAAA+TGG 0.439337 3_1:-80466163 None:intergenic
GACTATCAGAGCCGTCGATT+GGG 0.448600 3_1:+80472500 Msa0379360:CDS
GGACAGATCCGTCTTCTTGT+TGG 0.450529 3_1:-80472664 None:intergenic
GAAGAATCCTCCCCTCCTAT+AGG 0.451861 3_1:-80467384 None:intergenic
GATGTTGAGGCATGGATGCC+TGG 0.456063 3_1:+80470684 Msa0379360:CDS
AGCAGGTGCGCCTAAATCTT+CGG 0.458196 3_1:-80470649 None:intergenic
TGTTTGAACGGTGGCGGAAG+AGG 0.460940 3_1:-80466194 None:intergenic
GTCGGAGATGGTGGTGGTGG+TGG 0.464953 3_1:-80466224 None:intergenic
GAATCTCTGCAGTGCCGATA+AGG 0.466024 3_1:-80470068 None:intergenic
GCATCTGGATGAGTCATGTT+TGG 0.471368 3_1:-80467360 None:intergenic
GAAGGAGGGACTTACTGCTT+TGG 0.472224 3_1:+80467284 Msa0379360:CDS
CAGGAAGTTGAGAGAGTTCG+TGG 0.475368 3_1:+80467078 Msa0379360:intron
TGCAGTGGCTAATAAGATGA+AGG 0.481696 3_1:+80467110 Msa0379360:CDS
GTCAAGGATCATCTCCAACT+TGG 0.483492 3_1:+80467580 Msa0379360:CDS
AGACTATCAGAGCCGTCGAT+TGG 0.484317 3_1:+80472499 Msa0379360:CDS
GTACTTCTGTTGGACGATAC+CGG 0.493596 3_1:-80472526 None:intergenic
TCCAACAGAAGTACTTGTCC+CGG 0.494173 3_1:+80472535 Msa0379360:CDS
GCACTGCAGAGATTCCTGTT+GGG 0.495625 3_1:+80470076 Msa0379360:CDS
TCTATAGTAGCTTTCCATTG+AGG 0.499766 3_1:-80466369 None:intergenic
GCTTAATGATGAGCTTCAAC+GGG 0.499991 3_1:+80467323 Msa0379360:CDS
ATATCAAGCCCTCCCATGAA+TGG 0.501535 3_1:-80472707 None:intergenic
CACTGCAGAGATTCCTGTTG+GGG 0.506092 3_1:+80470077 Msa0379360:CDS
GGAAGAGGTGGAGAGAGCTT+TGG 0.510070 3_1:-80466179 None:intergenic
AGCTTAATGATGAGCTTCAA+CGG 0.513437 3_1:+80467322 Msa0379360:CDS
GTCGTCGGAGATGGTGGTGG+TGG 0.514465 3_1:-80466227 None:intergenic
GAATGCAGGGAAGAATTTGA+AGG 0.514570 3_1:+80467266 Msa0379360:intron
AAATACCGTCTTCCTTATTG+TGG 0.516317 3_1:-80467406 None:intergenic
GGCACTGCAGAGATTCCTGT+TGG 0.518136 3_1:+80470075 Msa0379360:CDS
TATAGACTTCAAGTGGATCA+AGG 0.518299 3_1:+80466386 Msa0379360:CDS
ATGAATGGCCTCAATGGCTC+CGG 0.520657 3_1:-80472692 None:intergenic
TCCTTATTCCGGAGCCATTG+AGG 0.522196 3_1:+80472684 Msa0379360:CDS
GTTAGTGTTTGGCGCTCAGA+TGG 0.524079 3_1:-80467144 None:intergenic
TAAATTGTTTATTCTTCAGA+AGG 0.524440 3_1:+80466488 Msa0379360:CDS
TTATCGTAAATTTGATGTTG+AGG 0.527976 3_1:+80470671 Msa0379360:CDS
GAATACCAATAATAAACAAA+GGG 0.528011 3_1:+80473002 Msa0379360:three_prime_UTR
AGTGCCAGCAGCACCTGCCT+CGG 0.529025 3_1:-80470175 None:intergenic
ATGCCTGGTTTAGAACGGTT+TGG 0.531725 3_1:+80470699 Msa0379360:CDS
CCAAATTAGCATCAGAATTG+CGG 0.533098 3_1:-80466443 None:intergenic
ACATCAAATTTACGATAAGC+AGG 0.533168 3_1:-80470666 None:intergenic
CAGCAGCACCTGCCTCGGTA+CGG 0.543838 3_1:-80470170 None:intergenic
AGTAGACATATAATCATTCG+TGG 0.546412 3_1:-80472632 None:intergenic
TACTGCTTTGGAAGAAGACC+TGG 0.548466 3_1:+80467296 Msa0379360:CDS
AGTTGGAGATGATCCTTGAC+AGG 0.549831 3_1:-80467577 None:intergenic
TTGGTCGTCGGAGATGGTGG+TGG 0.551860 3_1:-80466230 None:intergenic
CCCGGGACAAGTACTTCTGT+TGG 0.553956 3_1:-80472536 None:intergenic
ATGTAGGTGGAAAACCTCAA+TGG 0.554153 3_1:+80466355 Msa0379360:intron
TAACAACACCTGAAATTGTA+CGG 0.556606 3_1:+80469747 Msa0379360:CDS
CATCCAGATGCTCCTATAGG+AGG 0.557360 3_1:+80467372 Msa0379360:CDS
ATGACCTTGGTCGTCGGAGA+TGG 0.558941 3_1:-80466236 None:intergenic
CTGCAGTGCCGATAAGGCAT+TGG 0.560075 3_1:-80470062 None:intergenic
ATCCAGATGCTCCTATAGGA+GGG 0.560485 3_1:+80467373 Msa0379360:CDS
CATGGATGCCTGGTTTAGAA+CGG 0.561477 3_1:+80470694 Msa0379360:CDS
CGGAGATGTTTGAACGGTGG+CGG 0.565451 3_1:-80466200 None:intergenic
CGCCAAACACTAACTGAACA+AGG 0.566436 3_1:+80467153 Msa0379360:CDS
TTGAACGGTGGCGGAAGAGG+TGG 0.571462 3_1:-80466191 None:intergenic
TCACCAAACCGTTCTAAACC+AGG 0.571662 3_1:-80470702 None:intergenic
ATGTCTCTCGCCGGTACTAG+TGG 0.572272 3_1:-80466004 None:intergenic
TGAAGCAGTTCTATTAGAGA+TGG 0.577703 3_1:+80469673 Msa0379360:CDS
CTCACTTGAAATGTAACCCT+AGG 0.578253 3_1:-80470527 None:intergenic
ACTAGTACCGGCGAGAGACA+TGG 0.578734 3_1:+80466006 Msa0379360:exon
CATTGAGGCCATTCATGGGA+GGG 0.579345 3_1:+80472699 Msa0379360:CDS
TTCTCATTGTTTCCGTACCG+AGG 0.579716 3_1:+80470158 Msa0379360:CDS
TGAATACCAATAATAAACAA+AGG 0.580111 3_1:+80473001 Msa0379360:three_prime_UTR
GCAGGGAAGAATTTGAAGGA+GGG 0.582239 3_1:+80467270 Msa0379360:intron
GGATCATCTCCAACTTGGAA+AGG 0.583822 3_1:+80467585 Msa0379360:CDS
ACCTTGGTCGTCGGAGATGG+TGG 0.584603 3_1:-80466233 None:intergenic
ACAAAATAATCTTATATCAG+AGG 0.586392 3_1:+80472869 Msa0379360:three_prime_UTR
AATTTGTGGGAATGAATGGT+TGG 0.587606 3_1:-80466139 None:intergenic
TGGTTTAGAACGGTTTGGTG+AGG 0.589958 3_1:+80470704 Msa0379360:CDS
AAGCTACTATAGACTTCAAG+TGG 0.591029 3_1:+80466379 Msa0379360:CDS
GAGCCATTGAGGCCATTCAT+GGG 0.591133 3_1:+80472695 Msa0379360:CDS
TCCAGATGCTCCTATAGGAG+GGG 0.593632 3_1:+80467374 Msa0379360:CDS
GTGCTGCTGGCACTGCAACA+AGG 0.594968 3_1:+80470184 Msa0379360:CDS
GCGTGGAAATGGAAATTTGT+GGG 0.595192 3_1:-80466152 None:intergenic
GAGAGAGCTTTGGTGAGGCG+TGG 0.595371 3_1:-80466169 None:intergenic
GCAGTGGCTAATAAGATGAA+GGG 0.596858 3_1:+80467111 Msa0379360:CDS
GTAAATTTGATGTTGAGGCA+TGG 0.597186 3_1:+80470676 Msa0379360:CDS
GAAGACATATTCTCATCCCT+AGG 0.597348 3_1:+80470510 Msa0379360:CDS
GAGAATTACCAACAAGAAGA+CGG 0.597615 3_1:+80472656 Msa0379360:CDS
CTCTCAGAAGTGATGAAGAG+AGG 0.598060 3_1:+80469713 Msa0379360:CDS
ACTGAGTTTGAGAGTTTGGA+AGG 0.605983 3_1:-80466056 None:intergenic
TGCAGGGAAGAATTTGAAGG+AGG 0.611002 3_1:+80467269 Msa0379360:intron
TTCTTCCACAATAAGGAAGA+CGG 0.614769 3_1:+80467401 Msa0379360:CDS
GAAATGATGACCTTGGTCGT+CGG 0.618529 3_1:-80466242 None:intergenic
AGATGCTCCTATAGGAGGGG+AGG 0.621334 3_1:+80467377 Msa0379360:CDS
TGTGAATCCATGTCTCTCGC+CGG 0.622505 3_1:-80466013 None:intergenic
ACAATTGAAGGATGCTGTTG+CGG 0.622881 3_1:+80472775 Msa0379360:three_prime_UTR
AAGACATATTCTCATCCCTA+GGG 0.624425 3_1:+80470511 Msa0379360:CDS
CCAACAGAAGTACTTGTCCC+GGG 0.629573 3_1:+80472536 Msa0379360:CDS
CCATTGAGGCCATTCATGGG+AGG 0.629690 3_1:+80472698 Msa0379360:CDS
GAAGCGCGAAGAGGAACATG+TGG 0.632159 3_1:-80466086 None:intergenic
TCACTTGAAATGTAACCCTA+GGG 0.633087 3_1:-80470526 None:intergenic
CACGCTGCTTCACAGGTCAG+TGG 0.633207 3_1:+80469626 Msa0379360:intron
GCTCATCATTAAGCTTCACC+AGG 0.637240 3_1:-80467314 None:intergenic
GGTGGTCGGAGATGTTTGAA+CGG 0.642336 3_1:-80466206 None:intergenic
TAATGATGAGCTTCAACGGG+AGG 0.643259 3_1:+80467326 Msa0379360:CDS
AGGTGGAGAGAGCTTTGGTG+AGG 0.646573 3_1:-80466174 None:intergenic
AGGAGAAAGGAAGCGCGAAG+AGG 0.655253 3_1:-80466095 None:intergenic
ACTGCAGAGATTCCTGTTGG+GGG 0.671727 3_1:+80470078 Msa0379360:CDS
GCTGTTGCGGCATTAGATTG+TGG 0.675226 3_1:+80472788 Msa0379360:three_prime_UTR
GGTCGGAGATGTTTGAACGG+TGG 0.675520 3_1:-80466203 None:intergenic
TCGTGGAGAGAGAAATGCAG+TGG 0.678883 3_1:+80467095 Msa0379360:CDS
AACGTGTGAACAAACTGTGG+CGG 0.686971 3_1:-80472587 None:intergenic
AAGCGCGAAGAGGAACATGT+GGG 0.696487 3_1:-80466085 None:intergenic
GGCGTGGAAATGGAAATTTG+TGG 0.705957 3_1:-80466153 None:intergenic
AGGTGCGCCTAAATCTTCGG+AGG 0.706651 3_1:-80470646 None:intergenic
ACCACCATCTCCGACGACCA+AGG 0.708473 3_1:+80466232 Msa0379360:CDS
GATACCGGATTCCCAATCGA+CGG 0.717257 3_1:-80472511 None:intergenic
AATAATCACTCTCTTCTGGG+CGG 0.726189 3_1:-80470461 None:intergenic
TTTAACGTGTGAACAAACTG+TGG 0.755868 3_1:-80472590 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTATTTAAATTAGTTA+GGG - chr3_1:80469297-80469316 None:intergenic 10.0%
!!! TTTTTAGGTTAAAAATTAAA+AGG + chr3_1:80468141-80468160 Msa0379360:intron 10.0%
!!! TTTTGTATTTAAATTAGTTA+GGG + chr3_1:80469297-80469316 Msa0379360:intron 10.0%
!! AATAATGTAATGTTATATTA+TGG + chr3_1:80471088-80471107 Msa0379360:intron 10.0%
!! TATTAAAAAAAATAAATGAC+CGG - chr3_1:80471414-80471433 None:intergenic 10.0%
!!! AAAAAAAAAATCAAATCTTT+TGG - chr3_1:80471596-80471615 None:intergenic 10.0%
!!! TTGATTAATAATTTTTCTAA+AGG - chr3_1:80471644-80471663 None:intergenic 10.0%
!!! TTACTTTAATTTCATTGTTA+AGG - chr3_1:80466307-80466326 None:intergenic 15.0%
!! AAAAAAAAAAACGTTGTTAT+TGG + chr3_1:80466326-80466345 Msa0379360:intron 15.0%
!!! GAAAGTTCAAATTTTTATTT+AGG + chr3_1:80466609-80466628 Msa0379360:intron 15.0%
!!! TTAAAAGAACAAAGATATTT+TGG - chr3_1:80467028-80467047 None:intergenic 15.0%
!!! AAATATCTTTGTTCTTTTAA+TGG + chr3_1:80467028-80467047 Msa0379360:intron 15.0%
!! TTTGTATTTAAATTAGTTAG+GGG - chr3_1:80469298-80469317 None:intergenic 15.0%
!!! GTTTTGTATTTAAATTAGTT+AGG - chr3_1:80469296-80469315 None:intergenic 15.0%
!!! TATTTTTTTAAAATTCATGC+AGG + chr3_1:80468003-80468022 Msa0379360:intron 15.0%
!! AAGAAATTAACATAATTTGA+TGG + chr3_1:80468510-80468529 Msa0379360:intron 15.0%
!! TTGGAGAAATTTAAAAAAAA+TGG - chr3_1:80469126-80469145 None:intergenic 15.0%
!!! GTTTTGTATTTAAATTAGTT+AGG + chr3_1:80469296-80469315 Msa0379360:intron 15.0%
!! TTTGTATTTAAATTAGTTAG+GGG + chr3_1:80469298-80469317 Msa0379360:intron 15.0%
!! AATTAAGCCTATTATTATAT+AGG + chr3_1:80469363-80469382 Msa0379360:intron 15.0%
!! ATTTAATTATGAAAAGTTGA+AGG - chr3_1:80469453-80469472 None:intergenic 15.0%
!! AATCATTACAATAAAAAACA+AGG - chr3_1:80469554-80469573 None:intergenic 15.0%
!!! TTTTTAATGCAATTAGTAAT+TGG + chr3_1:80470763-80470782 Msa0379360:intron 15.0%
!! ATATTATGGAAAAACTTAAA+AGG + chr3_1:80471102-80471121 Msa0379360:intron 15.0%
!!! TTAAAAGGTTTTGAATTAAA+AGG + chr3_1:80471117-80471136 Msa0379360:intron 15.0%
!!! TAAAAGGTTTTGAATTAAAA+GGG + chr3_1:80471118-80471137 Msa0379360:intron 15.0%
!!! ATATTTTAGTGATAACAAAT+CGG + chr3_1:80471323-80471342 Msa0379360:intron 15.0%
!!! CATTTTGTTCATAAAATAAA+AGG + chr3_1:80471755-80471774 Msa0379360:intron 15.0%
!! CAATTTCTTTAAATTGAAAA+TGG + chr3_1:80472828-80472847 Msa0379360:three_prime_UTR 15.0%
!!! TAAGACATTTGATTTTAAAA+AGG - chr3_1:80472920-80472939 None:intergenic 15.0%
!! TAAATTGTTTATTCTTCAGA+AGG + chr3_1:80466488-80466507 Msa0379360:CDS 20.0%
!! TCATTTAAATTAAAAGGGAA+TGG - chr3_1:80466542-80466561 None:intergenic 20.0%
!! GCAAGTCATTTAAATTAAAA+GGG - chr3_1:80466547-80466566 None:intergenic 20.0%
!!! AGGTATTAATGATGTATTTT+GGG + chr3_1:80467518-80467537 Msa0379360:intron 20.0%
!! TTGTATTTAAATTAGTTAGG+GGG - chr3_1:80469299-80469318 None:intergenic 20.0%
!! AAAATAAAATAATATCCACG+TGG - chr3_1:80467989-80468008 None:intergenic 20.0%
!! AGGTTAAAAATTAAAAGGAA+TGG + chr3_1:80468146-80468165 Msa0379360:intron 20.0%
!! AAATTAAAAGGAATGGAAAA+AGG + chr3_1:80468153-80468172 Msa0379360:intron 20.0%
!!! ATTTCAATGTTTGATTTTCT+GGG - chr3_1:80468387-80468406 None:intergenic 20.0%
!!! TTTGGGTTAATATTTTTAGT+TGG + chr3_1:80468478-80468497 Msa0379360:intron 20.0%
!!! TTGGGTTAATATTTTTAGTT+GGG + chr3_1:80468479-80468498 Msa0379360:intron 20.0%
!!! AATTAACATAATTTGATGGT+TGG + chr3_1:80468514-80468533 Msa0379360:intron 20.0%
!!! ATTAACATAATTTGATGGTT+GGG + chr3_1:80468515-80468534 Msa0379360:intron 20.0%
!! AAAAAAAAAAAATATCCACG+TGG + chr3_1:80469176-80469195 Msa0379360:intron 20.0%
!! TTGTATTTAAATTAGTTAGG+GGG + chr3_1:80469299-80469318 Msa0379360:intron 20.0%
!! TGTGTTTCCTATATAATAAT+AGG - chr3_1:80469373-80469392 None:intergenic 20.0%
!!! TATTTTTAGGGAAAATCTAA+TGG - chr3_1:80469945-80469964 None:intergenic 20.0%
!!! ATAAAGCAGAAGTATTTTTA+GGG - chr3_1:80469957-80469976 None:intergenic 20.0%
!! ATTTGACCACATATTTATAT+TGG + chr3_1:80470254-80470273 Msa0379360:intron 20.0%
!!! AAAAGGTTTTGAATTAAAAG+GGG + chr3_1:80471119-80471138 Msa0379360:intron 20.0%
!!! ATATTTTTCGCTAATCAATT+TGG + chr3_1:80471238-80471257 Msa0379360:intron 20.0%
!!! TATTTTAGTGATAACAAATC+GGG + chr3_1:80471324-80471343 Msa0379360:intron 20.0%
!!! ATCAAATCTTTTGGAATTTT+CGG - chr3_1:80471587-80471606 None:intergenic 20.0%
!! AAATCAAATTATTGAACAAC+AGG + chr3_1:80471798-80471817 Msa0379360:intron 20.0%
!!! ATGTAAAAGTACTAATTTAG+AGG - chr3_1:80472200-80472219 None:intergenic 20.0%
!! AATTGTACAAAAGAATGTTA+TGG - chr3_1:80472761-80472780 None:intergenic 20.0%
!! ACAAAATAATCTTATATCAG+AGG + chr3_1:80472869-80472888 Msa0379360:three_prime_UTR 20.0%
!! TGAATACCAATAATAAACAA+AGG + chr3_1:80473001-80473020 Msa0379360:three_prime_UTR 20.0%
!! GAATACCAATAATAAACAAA+GGG + chr3_1:80473002-80473021 Msa0379360:three_prime_UTR 20.0%
!! TTGTTATTGGTGATTTATGT+AGG + chr3_1:80466339-80466358 Msa0379360:intron 25.0%
! CGCAAGTCATTTAAATTAAA+AGG - chr3_1:80466548-80466567 None:intergenic 25.0%
!! TTAAGTTGTTTATCCAAGTA+GGG - chr3_1:80466635-80466654 None:intergenic 25.0%
!! ATTAAGTTGTTTATCCAAGT+AGG - chr3_1:80466636-80466655 None:intergenic 25.0%
! AAACAAATGGTTATAAATCG+TGG - chr3_1:80467191-80467210 None:intergenic 25.0%
! AAGAAAGAAATGAATGGAAT+TGG - chr3_1:80467442-80467461 None:intergenic 25.0%
!! CAGGTATTAATGATGTATTT+TGG + chr3_1:80467517-80467536 Msa0379360:intron 25.0%
! TTGACAGGAAAACTAAATTT+AGG - chr3_1:80467565-80467584 None:intergenic 25.0%
!!! TAAATTTAGTTTTCCTGTCA+AGG + chr3_1:80467564-80467583 Msa0379360:CDS 25.0%
! CTATTTACAGTGTAAATTTG+AGG + chr3_1:80467693-80467712 Msa0379360:intron 25.0%
! TCCAGAATTATTCAATTTCA+AGG + chr3_1:80468096-80468115 Msa0379360:intron 25.0%
! TCCTTGAAATTGAATAATTC+TGG - chr3_1:80468100-80468119 None:intergenic 25.0%
! AACCTAAAAATCATCCTTAA+AGG - chr3_1:80468131-80468150 None:intergenic 25.0%
!!! ATAGGGTTTTAGTTTAACAA+AGG - chr3_1:80468274-80468293 None:intergenic 25.0%
!!! CATTTCAATGTTTGATTTTC+TGG - chr3_1:80468388-80468407 None:intergenic 25.0%
!! TTAACATAATTTGATGGTTG+GGG + chr3_1:80468516-80468535 Msa0379360:intron 25.0%
!!! GTATTTGGTTTTTGAGTATA+TGG - chr3_1:80468599-80468618 None:intergenic 25.0%
! TTGAATCGATTGAGAAAATT+AGG + chr3_1:80468770-80468789 Msa0379360:intron 25.0%
! TGAATCGATTGAGAAAATTA+GGG + chr3_1:80468771-80468790 Msa0379360:intron 25.0%
!! TATCTTAAGTGTTAACTTGA+TGG + chr3_1:80469519-80469538 Msa0379360:intron 25.0%
! GTAATGATTATGTTGAAGTT+TGG + chr3_1:80469565-80469584 Msa0379360:intron 25.0%
! TATTTCTTAGCCAATGTAAA+TGG + chr3_1:80469834-80469853 Msa0379360:intron 25.0%
! CATTGTGAGAAAGAAATAAA+TGG - chr3_1:80469867-80469886 None:intergenic 25.0%
! ATTTCTTTCTCACAATGTAA+TGG + chr3_1:80469870-80469889 Msa0379360:intron 25.0%
! ATGTAATGGTAATCATAATG+AGG + chr3_1:80469884-80469903 Msa0379360:intron 25.0%
!!! CATAAAGCAGAAGTATTTTT+AGG - chr3_1:80469958-80469977 None:intergenic 25.0%
!! ATACTTCTGCTTTATGTTTT+TGG + chr3_1:80469962-80469981 Msa0379360:intron 25.0%
!!! GAAAATGCGACATATTTTAA+GGG - chr3_1:80470141-80470160 None:intergenic 25.0%
!! AGAAAATGCGACATATTTTA+AGG - chr3_1:80470142-80470161 None:intergenic 25.0%
! TTACTGCCAATATAAATATG+TGG - chr3_1:80470263-80470282 None:intergenic 25.0%
!! TTGACTGATTATGTACATTT+TGG - chr3_1:80470298-80470317 None:intergenic 25.0%
! AAACATGAACATTGATATGT+AGG - chr3_1:80470343-80470362 None:intergenic 25.0%
!! ACATTTCAATTTTGCTGAAT+TGG - chr3_1:80470431-80470450 None:intergenic 25.0%
!!! CAATTTTAATAAGTTCTTCG+TGG - chr3_1:80470488-80470507 None:intergenic 25.0%
! TCATGTTATAGAATGAAGAA+AGG - chr3_1:80470571-80470590 None:intergenic 25.0%
! TTATCGTAAATTTGATGTTG+AGG + chr3_1:80470671-80470690 Msa0379360:CDS 25.0%
! AGCTATGTTAAATTCTTTGT+GGG + chr3_1:80471024-80471043 Msa0379360:intron 25.0%
! AGAGAATCATGTTTAACAAA+AGG - chr3_1:80471451-80471470 None:intergenic 25.0%
! CATAAAATAAAAGGCTTCAA+TGG + chr3_1:80471764-80471783 Msa0379360:intron 25.0%
! TCGAATAGAATTACGTTAAT+AGG + chr3_1:80471898-80471917 Msa0379360:intron 25.0%
!!! AATACTTTTTTGCCCAAATT+AGG + chr3_1:80472048-80472067 Msa0379360:intron 25.0%
! AATATGCACCTCAAATTAAA+GGG - chr3_1:80472116-80472135 None:intergenic 25.0%
! TAATATGCACCTCAAATTAA+AGG - chr3_1:80472117-80472136 None:intergenic 25.0%
!!! TTTAATTTGAGGTGCATATT+AGG + chr3_1:80472116-80472135 Msa0379360:intron 25.0%
!! TTAATTTGAGGTGCATATTA+GGG + chr3_1:80472117-80472136 Msa0379360:intron 25.0%
!!! TCTAAATGTGTGATTTGTTA+GGG - chr3_1:80472146-80472165 None:intergenic 25.0%
!! CGGATTAAAAGTAGTTATTT+TGG - chr3_1:80472171-80472190 None:intergenic 25.0%
!! TTTACTCTAATTTTGTAGCA+GGG - chr3_1:80472247-80472266 None:intergenic 25.0%
!! TTTTACTCTAATTTTGTAGC+AGG - chr3_1:80472248-80472267 None:intergenic 25.0%
!!! AGATTGCCTTTAGATTTTTT+TGG - chr3_1:80472563-80472582 None:intergenic 25.0%
!! ACATTCTTTTGTACAATTGA+AGG + chr3_1:80472763-80472782 Msa0379360:three_prime_UTR 25.0%
!! AAACTCCCTTTGTTTATTAT+TGG - chr3_1:80473010-80473029 None:intergenic 25.0%
AACAGAGAATTAAGAGAAGA+AGG - chr3_1:80466267-80466286 None:intergenic 30.0%
! TTATTGGTGATTTATGTAGG+TGG + chr3_1:80466342-80466361 Msa0379360:intron 30.0%
!! ATTTTTATTTAGGCCCTACT+TGG + chr3_1:80466619-80466638 Msa0379360:intron 30.0%
!! GTTGTTTTCATAAGTTATCC+AGG + chr3_1:80466834-80466853 Msa0379360:intron 30.0%
AAGTTATCCAGGAAAAATCA+TGG + chr3_1:80466845-80466864 Msa0379360:intron 30.0%
! CTTATTTCCATGATTTTTCC+TGG - chr3_1:80466855-80466874 None:intergenic 30.0%
AATAAGCTGAAAGTAGCTTA+TGG + chr3_1:80466869-80466888 Msa0379360:intron 30.0%
! ATTTGTTTCTTACAGATAGC+AGG + chr3_1:80467059-80467078 Msa0379360:intron 30.0%
ACCATTTGTTTGTTTGTGTT+TGG + chr3_1:80467200-80467219 Msa0379360:intron 30.0%
CCATTTGTTTGTTTGTGTTT+GGG + chr3_1:80467201-80467220 Msa0379360:intron 30.0%
TCAGAGAAGAAAGAAATGAA+TGG - chr3_1:80467448-80467467 None:intergenic 30.0%
!!! GATGTATTTTGGGATTTTGT+AGG + chr3_1:80467528-80467547 Msa0379360:intron 30.0%
!!! TATTTTGGGATTTTGTAGGT+TGG + chr3_1:80467532-80467551 Msa0379360:intron 30.0%
ACCTGGTACTCTTATTATTA+TGG + chr3_1:80467792-80467811 Msa0379360:intron 30.0%
! TTATGGCTTAATTGCACTTT+TGG + chr3_1:80467809-80467828 Msa0379360:intron 30.0%
TGCCAAAGAATCAATACTTA+GGG - chr3_1:80469269-80469288 None:intergenic 30.0%
!!! TATTGATTCTTTGGCAGTTT+TGG + chr3_1:80467900-80467919 Msa0379360:intron 30.0%
!! AGCCTTTAAGGATGATTTTT+AGG + chr3_1:80468126-80468145 Msa0379360:intron 30.0%
AAAGGAATGGAAAAAGGAAT+AGG + chr3_1:80468159-80468178 Msa0379360:intron 30.0%
ATAGGAATTGATGAATTTCC+TGG - chr3_1:80468239-80468258 None:intergenic 30.0%
AAGAGAATAAGGGTAAGATA+GGG - chr3_1:80468291-80468310 None:intergenic 30.0%
!!! GAACAATTCATGGGTTTTTT+GGG + chr3_1:80468461-80468480 Msa0379360:intron 30.0%
! TAACATAATTTGATGGTTGG+GGG + chr3_1:80468517-80468536 Msa0379360:intron 30.0%
! TGTATTTGTTTGTTGGTGTT+AGG - chr3_1:80468669-80468688 None:intergenic 30.0%
ACTGTGTTGTATTTGTTTGT+TGG - chr3_1:80468676-80468695 None:intergenic 30.0%
! TTTCTCAATCGATTCAATCA+TGG - chr3_1:80468767-80468786 None:intergenic 30.0%
GATTGAGAAAATTAGGGTTA+GGG + chr3_1:80468777-80468796 Msa0379360:intron 30.0%
AAGAAATGAAGATGAAGTGA+AGG + chr3_1:80468827-80468846 Msa0379360:intron 30.0%
!!! GCTTGCTGATATTTTGAAAT+TGG - chr3_1:80469145-80469164 None:intergenic 30.0%
!!! TATTGATTCTTTGGCAGTTT+TGG - chr3_1:80467900-80467919 None:intergenic 30.0%
TGCCAAAGAATCAATACTTA+AGG + chr3_1:80469269-80469288 Msa0379360:intron 30.0%
GCCAAAGAATCAATACTTAA+GGG + chr3_1:80469270-80469289 Msa0379360:intron 30.0%
CCAAAGAATCAATACTTAAG+GGG + chr3_1:80469271-80469290 Msa0379360:intron 30.0%
! AATAGGCTTAATTGCACTTT+TGG - chr3_1:80469356-80469375 None:intergenic 30.0%
!! ATAGAACTGCTTCATTTTTC+AGG - chr3_1:80469667-80469686 None:intergenic 30.0%
TAACAACACCTGAAATTGTA+CGG + chr3_1:80469747-80469766 Msa0379360:CDS 30.0%
AAATACACAAACACAAACCT+GGG - chr3_1:80469819-80469838 None:intergenic 30.0%
GAATAAACCTGTTTGATGTT+GGG - chr3_1:80470027-80470046 None:intergenic 30.0%
AGAATAAACCTGTTTGATGT+TGG - chr3_1:80470028-80470047 None:intergenic 30.0%
!! TATTGATTGATAATGAGCAG+AGG + chr3_1:80470390-80470409 Msa0379360:intron 30.0%
! TTTCAATTTTGCTGAATTGG+TGG - chr3_1:80470428-80470447 None:intergenic 30.0%
GTTATATTAGACGTAGCAAT+GGG - chr3_1:80470595-80470614 None:intergenic 30.0%
AGTTATATTAGACGTAGCAA+TGG - chr3_1:80470596-80470615 None:intergenic 30.0%
ACATCAAATTTACGATAAGC+AGG - chr3_1:80470669-80470688 None:intergenic 30.0%
TCCAACATTCTTAGTTTAGT+GGG - chr3_1:80470809-80470828 None:intergenic 30.0%
!!! TGGGTAATGAGTTTTAGTTA+AGG + chr3_1:80470835-80470854 Msa0379360:intron 30.0%
TAGTTAAGGTAGAATCAATC+AGG + chr3_1:80470849-80470868 Msa0379360:intron 30.0%
GAGCTATGTTAAATTCTTTG+TGG + chr3_1:80471023-80471042 Msa0379360:intron 30.0%
ACACATCTTCAAAACATAGT+GGG - chr3_1:80471058-80471077 None:intergenic 30.0%
AACACATCTTCAAAACATAG+TGG - chr3_1:80471059-80471078 None:intergenic 30.0%
TAATATGCACCCTCTTAAAA+AGG + chr3_1:80471353-80471372 Msa0379360:intron 30.0%
!! ATGTTTGGACCTTTTTAAGA+GGG - chr3_1:80471365-80471384 None:intergenic 30.0%
AAAATTGAATGGTCCATGTT+TGG - chr3_1:80471380-80471399 None:intergenic 30.0%
CTACTGTGTGTAAAATTGAA+TGG - chr3_1:80471391-80471410 None:intergenic 30.0%
! ATATTGAAACTGGCTCTTTA+AGG - chr3_1:80471715-80471734 None:intergenic 30.0%
AAGAGCCAGTTTCAATATAT+TGG + chr3_1:80471717-80471736 Msa0379360:intron 30.0%
AGAGCCAGTTTCAATATATT+GGG + chr3_1:80471718-80471737 Msa0379360:intron 30.0%
TCAACCCAATATATTGAAAC+TGG - chr3_1:80471725-80471744 None:intergenic 30.0%
AACGTAATTCTATTCGATTG+TGG - chr3_1:80471895-80471914 None:intergenic 30.0%
ATCAGAAACAAAATCGTTCT+TGG - chr3_1:80471924-80471943 None:intergenic 30.0%
! TAATTTGAGGTGCATATTAG+GGG + chr3_1:80472118-80472137 Msa0379360:intron 30.0%
!! CTCTAAATGTGTGATTTGTT+AGG - chr3_1:80472147-80472166 None:intergenic 30.0%
TACTAATTTAGAGGTCGATA+CGG - chr3_1:80472191-80472210 None:intergenic 30.0%
CCTCTTCATGTTTGATATAA+CGG + chr3_1:80472450-80472469 Msa0379360:intron 30.0%
AGTAGACATATAATCATTCG+TGG - chr3_1:80472635-80472654 None:intergenic 30.0%
TTGAACTGAGTTTGAGAGTT+TGG - chr3_1:80466063-80466082 None:intergenic 35.0%
!!! ATTTTGGTTTTGTGAAGTGG+AGG - chr3_1:80466118-80466137 None:intergenic 35.0%
!!! GGAATTTTGGTTTTGTGAAG+TGG - chr3_1:80466121-80466140 None:intergenic 35.0%
! GGAATGAATGGTTGGAATTT+TGG - chr3_1:80466134-80466153 None:intergenic 35.0%
AATTTGTGGGAATGAATGGT+TGG - chr3_1:80466142-80466161 None:intergenic 35.0%
TGGAAATTTGTGGGAATGAA+TGG - chr3_1:80466146-80466165 None:intergenic 35.0%
TCTATAGTAGCTTTCCATTG+AGG - chr3_1:80466372-80466391 None:intergenic 35.0%
AAGCTACTATAGACTTCAAG+TGG + chr3_1:80466379-80466398 Msa0379360:CDS 35.0%
TATAGACTTCAAGTGGATCA+AGG + chr3_1:80466386-80466405 Msa0379360:CDS 35.0%
CCAAATTAGCATCAGAATTG+CGG - chr3_1:80466446-80466465 None:intergenic 35.0%
ATTAAGCGCGCTTATTACAT+TGG - chr3_1:80466710-80466729 None:intergenic 35.0%
TTGGCGGTTGATTACATTTA+GGG - chr3_1:80466973-80466992 None:intergenic 35.0%
ATTGGCGGTTGATTACATTT+AGG - chr3_1:80466974-80466993 None:intergenic 35.0%
ACTACCATCAAGCATTTGAT+TGG - chr3_1:80466992-80467011 None:intergenic 35.0%
CCCAAACACAAACAAACAAA+TGG - chr3_1:80467204-80467223 None:intergenic 35.0%
AACCGTTACATTATGAATGC+AGG + chr3_1:80467252-80467271 Msa0379360:intron 35.0%
ACCGTTACATTATGAATGCA+GGG + chr3_1:80467253-80467272 Msa0379360:intron 35.0%
TCCCTGCATTCATAATGTAA+CGG - chr3_1:80467257-80467276 None:intergenic 35.0%
AGCTTAATGATGAGCTTCAA+CGG + chr3_1:80467322-80467341 Msa0379360:CDS 35.0%
TTCTTCCACAATAAGGAAGA+CGG + chr3_1:80467401-80467420 Msa0379360:CDS 35.0%
AAATACCGTCTTCCTTATTG+TGG - chr3_1:80467409-80467428 None:intergenic 35.0%
TCTTTCTTCTCTGAGTGAAA+AGG + chr3_1:80467454-80467473 Msa0379360:intron 35.0%
GTATCAGTTTCTTATCTCTC+AGG + chr3_1:80467498-80467517 Msa0379360:intron 35.0%
!! AGCATCGTTTTTCCAAAGTA+TGG + chr3_1:80467670-80467689 Msa0379360:intron 35.0%
CACTGTAAATAGCCATACTT+TGG - chr3_1:80467685-80467704 None:intergenic 35.0%
! ACAGTGTAAATTTGAGGTGT+AGG + chr3_1:80467699-80467718 Msa0379360:intron 35.0%
GGTGTAGGTTAATGACATAT+TGG + chr3_1:80467714-80467733 Msa0379360:intron 35.0%
GTTAATGACATATTGGCAAC+AGG + chr3_1:80467721-80467740 Msa0379360:intron 35.0%
TCTCTTGGAATTTACTTACC+TGG + chr3_1:80467775-80467794 Msa0379360:intron 35.0%
!! GCCATAATAATAAGAGTACC+AGG - chr3_1:80467796-80467815 None:intergenic 35.0%
ATTTAAATTAGTTAGGGGGC+CGG - chr3_1:80469303-80469322 None:intergenic 35.0%
CCAAAGAATCAATACTTAGG+GGG - chr3_1:80467894-80467913 None:intergenic 35.0%
GCCAAAGAATCAATACTTAG+GGG - chr3_1:80467895-80467914 None:intergenic 35.0%
CTGCCAAAGAATCAATACTT+AGG - chr3_1:80469268-80469287 None:intergenic 35.0%
CAAGGATGATTAAGCCTTTA+AGG + chr3_1:80468114-80468133 Msa0379360:intron 35.0%
CAAAGGATGAAAAGAGAGAT+AGG - chr3_1:80468257-80468276 None:intergenic 35.0%
GAAGAGAATAAGGGTAAGAT+AGG - chr3_1:80468292-80468311 None:intergenic 35.0%
TGTCTTGTGTAAATAAACGC+TGG + chr3_1:80468406-80468425 Msa0379360:intron 35.0%
GTCTTGTGTAAATAAACGCT+GGG + chr3_1:80468407-80468426 Msa0379360:intron 35.0%
TTCCTGTTCGAACAATTCAT+GGG + chr3_1:80468452-80468471 Msa0379360:intron 35.0%
!!! CGAACAATTCATGGGTTTTT+TGG + chr3_1:80468460-80468479 Msa0379360:intron 35.0%
! TTCGAAGTTTTCGTCAAACT+GGG - chr3_1:80468555-80468574 None:intergenic 35.0%
! ATTCGAAGTTTTCGTCAAAC+TGG - chr3_1:80468556-80468575 None:intergenic 35.0%
AGGGAAAACTGTGTTGTATT+TGG - chr3_1:80468614-80468633 None:intergenic 35.0%
AACAATCGCAGTAGTGTTAT+CGG - chr3_1:80468731-80468750 None:intergenic 35.0%
CGATTGAGAAAATTAGGGTT+AGG + chr3_1:80468776-80468795 Msa0379360:intron 35.0%
GTTAGGGTTTGATCAGAAAA+GGG + chr3_1:80468793-80468812 Msa0379360:intron 35.0%
TTAGGGTTTGATCAGAAAAG+GGG + chr3_1:80468794-80468813 Msa0379360:intron 35.0%
AATGAAGATGAAGTGAAGGT+CGG + chr3_1:80468831-80468850 Msa0379360:intron 35.0%
AAGTCTTTGATGGAGTTTGT+TGG + chr3_1:80468896-80468915 Msa0379360:intron 35.0%
ATGCGATTGAGTTTGATAAG+CGG + chr3_1:80468990-80469009 Msa0379360:intron 35.0%
AAAAGGGGTTTGATCTGAAA+AGG + chr3_1:80469050-80469069 Msa0379360:intron 35.0%
AAAGGGGTTTGATCTGAAAA+GGG + chr3_1:80469051-80469070 Msa0379360:intron 35.0%
!! CCCCTTAAGTATTGATTCTT+TGG - chr3_1:80469274-80469293 None:intergenic 35.0%
! CTTTTCAAAAGTTGCGGTTA+CGG - chr3_1:80469325-80469344 None:intergenic 35.0%
!! ACCGCAACTTTTGAAAAGAT+AGG + chr3_1:80469327-80469346 Msa0379360:intron 35.0%
! CCCTATCTTTTCAAAAGTTG+CGG - chr3_1:80469331-80469350 None:intergenic 35.0%
!! CCGCAACTTTTGAAAAGATA+GGG + chr3_1:80469328-80469347 Msa0379360:intron 35.0%
!! CGCAACTTTTGAAAAGATAG+GGG + chr3_1:80469329-80469348 Msa0379360:intron 35.0%
!! GCAACTTTTGAAAAGATAGG+GGG + chr3_1:80469330-80469349 Msa0379360:intron 35.0%
ATCATACACAAGAACAGTCA+TGG - chr3_1:80469484-80469503 None:intergenic 35.0%
TGAAGCAGTTCTATTAGAGA+TGG + chr3_1:80469673-80469692 Msa0379360:CDS 35.0%
!! ACAATTTCAGGTGTTGTTAG+TGG - chr3_1:80469746-80469765 None:intergenic 35.0%
TCCTCTGTTGTTGAAAAATG+TGG + chr3_1:80469770-80469789 Msa0379360:CDS 35.0%
CCTCTGTTGTTGAAAAATGT+GGG + chr3_1:80469771-80469790 Msa0379360:CDS 35.0%
GAAATACACAAACACAAACC+TGG - chr3_1:80469820-80469839 None:intergenic 35.0%
CAAATCAATACCTAGGAACA+TGG - chr3_1:80470239-80470258 None:intergenic 35.0%
ATGTGGTCAAATCAATACCT+AGG - chr3_1:80470246-80470265 None:intergenic 35.0%
!! CTGATTATGTACATTTTGGC+TGG - chr3_1:80470294-80470313 None:intergenic 35.0%
GGTAATAATCACTCTCTTCT+GGG - chr3_1:80470467-80470486 None:intergenic 35.0%
TGGTAATAATCACTCTCTTC+TGG - chr3_1:80470468-80470487 None:intergenic 35.0%
AAGACATATTCTCATCCCTA+GGG + chr3_1:80470511-80470530 Msa0379360:CDS 35.0%
TCACTTGAAATGTAACCCTA+GGG - chr3_1:80470529-80470548 None:intergenic 35.0%
TTTCTGCAGAACTTTGGATA+TGG + chr3_1:80470623-80470642 Msa0379360:intron 35.0%
GTAAATTTGATGTTGAGGCA+TGG + chr3_1:80470676-80470695 Msa0379360:CDS 35.0%
GGTCAGTATTTAATTCCCTT+TGG + chr3_1:80470725-80470744 Msa0379360:intron 35.0%
AGAGATAATGTCAGACCAAA+GGG - chr3_1:80470743-80470762 None:intergenic 35.0%
AAGAGATAATGTCAGACCAA+AGG - chr3_1:80470744-80470763 None:intergenic 35.0%
CCAACATTCTTAGTTTAGTG+GGG - chr3_1:80470808-80470827 None:intergenic 35.0%
GTCCAACATTCTTAGTTTAG+TGG - chr3_1:80470810-80470829 None:intergenic 35.0%
TAAGAATGTTGGACTCATGT+GGG + chr3_1:80470816-80470835 Msa0379360:intron 35.0%
ACCAAGAACTGTTTCAGTTA+GGG - chr3_1:80470891-80470910 None:intergenic 35.0%
GTCAAACTTTAATTACCTCC+CGG + chr3_1:80470909-80470928 Msa0379360:intron 35.0%
! TTGATAATCCACAATTCGAC+CGG - chr3_1:80470931-80470950 None:intergenic 35.0%
ACATCTTCAAAACATAGTGG+GGG - chr3_1:80471056-80471075 None:intergenic 35.0%
CACATCTTCAAAACATAGTG+GGG - chr3_1:80471057-80471076 None:intergenic 35.0%
! TTAAGAGGGTGCATATTAGA+GGG - chr3_1:80471351-80471370 None:intergenic 35.0%
! TTTAAGAGGGTGCATATTAG+AGG - chr3_1:80471352-80471371 None:intergenic 35.0%
!! CATGTTTGGACCTTTTTAAG+AGG - chr3_1:80471366-80471385 None:intergenic 35.0%
CTCTTAAAAAGGTCCAAACA+TGG + chr3_1:80471364-80471383 Msa0379360:intron 35.0%
! TCAATTTTACACACAGTAGC+CGG + chr3_1:80471392-80471411 Msa0379360:intron 35.0%
!! CTCTTTAAGGTCAACACTAA+TGG - chr3_1:80471702-80471721 None:intergenic 35.0%
! ATTCGATTGTGGTCAGTTTT+AGG - chr3_1:80471884-80471903 None:intergenic 35.0%
TTCTGATTACCCAAGAAAAG+AGG + chr3_1:80471937-80471956 Msa0379360:intron 35.0%
TCTGATTACCCAAGAAAAGA+GGG + chr3_1:80471938-80471957 Msa0379360:intron 35.0%
! CCATTTATCCCTCTTTTCTT+GGG - chr3_1:80471949-80471968 None:intergenic 35.0%
! TCCATTTATCCCTCTTTTCT+TGG - chr3_1:80471950-80471969 None:intergenic 35.0%
AGGGATAAATGGAAGTGAAA+AGG + chr3_1:80471957-80471976 Msa0379360:intron 35.0%
GGGATAAATGGAAGTGAAAA+GGG + chr3_1:80471958-80471977 Msa0379360:intron 35.0%
GGATAAATGGAAGTGAAAAG+GGG + chr3_1:80471959-80471978 Msa0379360:intron 35.0%
TGAGTGTTTGAAGAAGATGA+AGG + chr3_1:80472023-80472042 Msa0379360:intron 35.0%
ACCAATCAGTCACCTAATTT+GGG - chr3_1:80472063-80472082 None:intergenic 35.0%
CATCATCTCATGAAAAACTG+TGG + chr3_1:80472397-80472416 Msa0379360:intron 35.0%
CCGTTATATCAAACATGAAG+AGG - chr3_1:80472453-80472472 None:intergenic 35.0%
!!! CTTTAGATTTTTTTGGACCC+GGG - chr3_1:80472556-80472575 None:intergenic 35.0%
!!! CCTTTAGATTTTTTTGGACC+CGG - chr3_1:80472557-80472576 None:intergenic 35.0%
TTTAACGTGTGAACAAACTG+TGG - chr3_1:80472593-80472612 None:intergenic 35.0%
GAGAATTACCAACAAGAAGA+CGG + chr3_1:80472656-80472675 Msa0379360:CDS 35.0%
ACTGAGTTTGAGAGTTTGGA+AGG - chr3_1:80466059-80466078 None:intergenic 40.0%
! TTTTGTGAAGTGGAGGAGAA+AGG - chr3_1:80466111-80466130 None:intergenic 40.0%
GCGTGGAAATGGAAATTTGT+GGG - chr3_1:80466155-80466174 None:intergenic 40.0%
GAAGAAGGAAATGATGACCT+TGG - chr3_1:80466252-80466271 None:intergenic 40.0%
ATGTAGGTGGAAAACCTCAA+TGG + chr3_1:80466355-80466374 Msa0379360:intron 40.0%
CCGCAATTCTGATGCTAATT+TGG + chr3_1:80466443-80466462 Msa0379360:CDS 40.0%
AAGCACTTGTGAGACTGTTT+GGG - chr3_1:80466911-80466930 None:intergenic 40.0%
TAAGCACTTGTGAGACTGTT+TGG - chr3_1:80466912-80466931 None:intergenic 40.0%
ACCATCAAGCATTTGATTGG+CGG - chr3_1:80466989-80467008 None:intergenic 40.0%
TGCAGTGGCTAATAAGATGA+AGG + chr3_1:80467110-80467129 Msa0379360:CDS 40.0%
GCAGTGGCTAATAAGATGAA+GGG + chr3_1:80467111-80467130 Msa0379360:CDS 40.0%
GACCTTGTTCAGTTAGTGTT+TGG - chr3_1:80467158-80467177 None:intergenic 40.0%
GAATGCAGGGAAGAATTTGA+AGG + chr3_1:80467266-80467285 Msa0379360:intron 40.0%
GCTTAATGATGAGCTTCAAC+GGG + chr3_1:80467323-80467342 Msa0379360:CDS 40.0%
TGAGTGAAAAGGTTGCATGT+TGG + chr3_1:80467465-80467484 Msa0379360:intron 40.0%
GATCAAGTTCCTTTCCAAGT+TGG - chr3_1:80467597-80467616 None:intergenic 40.0%
GACATATTGGCAACAGGTAA+AGG + chr3_1:80467727-80467746 Msa0379360:intron 40.0%
CATTGTCAATGTGACTCTCT+TGG + chr3_1:80467760-80467779 Msa0379360:intron 40.0%
!! GCAACTTTTGGAAAGATAGG+GGG - chr3_1:80467835-80467854 None:intergenic 40.0%
!! CGCAACTTTTGGAAAGATAG+GGG - chr3_1:80467836-80467855 None:intergenic 40.0%
!! CCGCAACTTTTGGAAAGATA+GGG - chr3_1:80467837-80467856 None:intergenic 40.0%
CCCTATCTTTCCAAAAGTTG+CGG + chr3_1:80467834-80467853 Msa0379360:intron 40.0%
!! ACCGCAACTTTTGGAAAGAT+AGG - chr3_1:80467838-80467857 None:intergenic 40.0%
!! CCCCCTAAGTATTGATTCTT+TGG + chr3_1:80467891-80467910 Msa0379360:intron 40.0%
AGCAAAGACCAGGTCAAAAA+TGG - chr3_1:80469230-80469249 None:intergenic 40.0%
GAAGGGTTGGAAGAGAATAA+GGG - chr3_1:80468301-80468320 None:intergenic 40.0%
AGAAGGGTTGGAAGAGAATA+AGG - chr3_1:80468302-80468321 None:intergenic 40.0%
GGCATGAAGATGTGAAAGAA+GGG - chr3_1:80468339-80468358 None:intergenic 40.0%
ATCTTCATGCCCAAATCTTG+CGG + chr3_1:80468348-80468367 Msa0379360:intron 40.0%
! TTTTCTCTGCCGCAAGATTT+GGG - chr3_1:80468360-80468379 None:intergenic 40.0%
! TTTTTCTCTGCCGCAAGATT+TGG - chr3_1:80468361-80468380 None:intergenic 40.0%
TGTTCGAACAGGAACATCAA+TGG - chr3_1:80468446-80468465 None:intergenic 40.0%
GTTCCTGTTCGAACAATTCA+TGG + chr3_1:80468451-80468470 Msa0379360:intron 40.0%
AACCCATGAATTGTTCGAAC+AGG - chr3_1:80468457-80468476 None:intergenic 40.0%
AACAAGGACAGAACAAGGAA+GGG - chr3_1:80468633-80468652 None:intergenic 40.0%
AAACAAGGACAGAACAAGGA+AGG - chr3_1:80468634-80468653 None:intergenic 40.0%
TGTGAAACAAGGACAGAACA+AGG - chr3_1:80468638-80468657 None:intergenic 40.0%
AGGTTGTTGGATGTGAAACA+AGG - chr3_1:80468649-80468668 None:intergenic 40.0%
!! GTTTGTTGGTGTTAGGTTGT+TGG - chr3_1:80468662-80468681 None:intergenic 40.0%
AAGCATTCGAGAACAAGGAA+GGG - chr3_1:80468702-80468721 None:intergenic 40.0%
GATTCAATCATGGAGAAACC+CGG - chr3_1:80468757-80468776 None:intergenic 40.0%
GGTTAGGGTTTGATCAGAAA+AGG + chr3_1:80468792-80468811 Msa0379360:intron 40.0%
! TGAAGGTGGTGATTCTGAAA+AGG + chr3_1:80469033-80469052 Msa0379360:intron 40.0%
! GAAGGTGGTGATTCTGAAAA+GGG + chr3_1:80469034-80469053 Msa0379360:intron 40.0%
! AAGGTGGTGATTCTGAAAAG+GGG + chr3_1:80469035-80469054 Msa0379360:intron 40.0%
!! AAAAGGGTGTTGCTTTGCAA+GGG + chr3_1:80469067-80469086 Msa0379360:intron 40.0%
AGCAAAGACCAGGTCAAAAA+TGG + chr3_1:80469230-80469249 Msa0379360:intron 40.0%
AGGAAACACAGTAGTGTCTT+AGG + chr3_1:80469383-80469402 Msa0379360:intron 40.0%
TAGAGATGGCTCTTCTCAAT+TGG + chr3_1:80469687-80469706 Msa0379360:CDS 40.0%
!! CCCACATTTTTCAACAACAG+AGG - chr3_1:80469774-80469793 None:intergenic 40.0%
TGGCTAACAGCCATTTACAT+TGG - chr3_1:80469847-80469866 None:intergenic 40.0%
! ATCTTTTGCACCATGAAGCA+AGG - chr3_1:80469915-80469934 None:intergenic 40.0%
GTTTCATCCCAACATCAAAC+AGG + chr3_1:80470017-80470036 Msa0379360:intron 40.0%
! CTTTTTCCTACCATGTTCCT+AGG + chr3_1:80470226-80470245 Msa0379360:intron 40.0%
TCAATACCTAGGAACATGGT+AGG - chr3_1:80470235-80470254 None:intergenic 40.0%
AATAATCACTCTCTTCTGGG+CGG - chr3_1:80470464-80470483 None:intergenic 40.0%
GAAGACATATTCTCATCCCT+AGG + chr3_1:80470510-80470529 Msa0379360:CDS 40.0%
CTCACTTGAAATGTAACCCT+AGG - chr3_1:80470530-80470549 None:intergenic 40.0%
TGAGCATTTCTGCAGAACTT+TGG + chr3_1:80470617-80470636 Msa0379360:intron 40.0%
CCCCACTAAACTAAGAATGT+TGG + chr3_1:80470805-80470824 Msa0379360:intron 40.0%
CTAAGAATGTTGGACTCATG+TGG + chr3_1:80470815-80470834 Msa0379360:intron 40.0%
ACCCTAACTGAAACAGTTCT+TGG + chr3_1:80470887-80470906 Msa0379360:intron 40.0%
GACCAAGAACTGTTTCAGTT+AGG - chr3_1:80470892-80470911 None:intergenic 40.0%
TGATAATCCACAATTCGACC+GGG - chr3_1:80470930-80470949 None:intergenic 40.0%
AGCAAGGAATGATGACATTG+AGG - chr3_1:80471508-80471527 None:intergenic 40.0%
TTGTTCATAGAGAGAGAGCA+AGG - chr3_1:80471524-80471543 None:intergenic 40.0%
TCATTGAGAACCTATATGGC+TGG - chr3_1:80471564-80471583 None:intergenic 40.0%
TCGGTCATTGAGAACCTATA+TGG - chr3_1:80471568-80471587 None:intergenic 40.0%
!!! TGGTCAGTTTTAGGAGCAAA+AGG - chr3_1:80471875-80471894 None:intergenic 40.0%
CCCAAGAAAAGAGGGATAAA+TGG + chr3_1:80471946-80471965 Msa0379360:intron 40.0%
TGGAAGTGAAAAGGGGTAAA+TGG + chr3_1:80471966-80471985 Msa0379360:intron 40.0%
CACCAATCAGTCACCTAATT+TGG - chr3_1:80472064-80472083 None:intergenic 40.0%
CCTCAAATTAAAGGGACCAT+GGG - chr3_1:80472108-80472127 None:intergenic 40.0%
ACCTCAAATTAAAGGGACCA+TGG - chr3_1:80472109-80472128 None:intergenic 40.0%
! AGCCAGAAATTTTGAGCAGT+GGG - chr3_1:80472327-80472346 None:intergenic 40.0%
CCGGGTCCAAAAAAATCTAA+AGG + chr3_1:80472554-80472573 Msa0379360:CDS 40.0%
ACAATTGAAGGATGCTGTTG+CGG + chr3_1:80472775-80472794 Msa0379360:three_prime_UTR 40.0%
GGCGTGGAAATGGAAATTTG+TGG - chr3_1:80466156-80466175 None:intergenic 45.0%
GAAATGATGACCTTGGTCGT+CGG - chr3_1:80466245-80466264 None:intergenic 45.0%
ACCGCCAATCAAATGCTTGA+TGG + chr3_1:80466985-80467004 Msa0379360:intron 45.0%
CGCCAAACACTAACTGAACA+AGG + chr3_1:80467153-80467172 Msa0379360:CDS 45.0%
TGCAGGGAAGAATTTGAAGG+AGG + chr3_1:80467269-80467288 Msa0379360:intron 45.0%
GCAGGGAAGAATTTGAAGGA+GGG + chr3_1:80467270-80467289 Msa0379360:intron 45.0%
!! TACTGCTTTGGAAGAAGACC+TGG + chr3_1:80467296-80467315 Msa0379360:CDS 45.0%
GCTCATCATTAAGCTTCACC+AGG - chr3_1:80467317-80467336 None:intergenic 45.0%
TAATGATGAGCTTCAACGGG+AGG + chr3_1:80467326-80467345 Msa0379360:CDS 45.0%
GCATCTGGATGAGTCATGTT+TGG - chr3_1:80467363-80467382 None:intergenic 45.0%
ACTCATCCAGATGCTCCTAT+AGG + chr3_1:80467369-80467388 Msa0379360:CDS 45.0%
ATCCAGATGCTCCTATAGGA+GGG + chr3_1:80467373-80467392 Msa0379360:CDS 45.0%
GGGAGGATTCTTCCACAATA+AGG + chr3_1:80467394-80467413 Msa0379360:CDS 45.0%
AGTTGGAGATGATCCTTGAC+AGG - chr3_1:80467580-80467599 None:intergenic 45.0%
GTCAAGGATCATCTCCAACT+TGG + chr3_1:80467580-80467599 Msa0379360:CDS 45.0%
GGATCATCTCCAACTTGGAA+AGG + chr3_1:80467585-80467604 Msa0379360:CDS 45.0%
!! TGATTTTGATGCTGCTGCAG+AGG + chr3_1:80467621-80467640 Msa0379360:CDS 45.0%
CTTTCCAAAAGTTGCGGTTC+CGG + chr3_1:80467840-80467859 Msa0379360:intron 45.0%
ACCAGGTCAAAAATGGACCA+GGG - chr3_1:80469237-80469256 None:intergenic 45.0%
ATCTTCATGATGCATCAGCC+AGG + chr3_1:80468218-80468237 Msa0379360:intron 45.0%
TGAAAGAAGGGTTGAGAGAC+GGG - chr3_1:80468327-80468346 None:intergenic 45.0%
GTGAAAGAAGGGTTGAGAGA+CGG - chr3_1:80468328-80468347 None:intergenic 45.0%
GGGCATGAAGATGTGAAAGA+AGG - chr3_1:80468340-80468359 None:intergenic 45.0%
! CATAATTTGATGGTTGGGGG+TGG + chr3_1:80468520-80468539 Msa0379360:intron 45.0%
! GAAGCATTCGAGAACAAGGA+AGG - chr3_1:80468703-80468722 None:intergenic 45.0%
!! GAAGGAAGCATTCGAGAACA+AGG - chr3_1:80468707-80468726 None:intergenic 45.0%
CACTACTGCGATTGTTTCAC+CGG + chr3_1:80468735-80468754 Msa0379360:intron 45.0%
ACTACTGCGATTGTTTCACC+GGG + chr3_1:80468736-80468755 Msa0379360:intron 45.0%
TGCTAGAGCGAAGTCTTTGA+TGG + chr3_1:80468886-80468905 Msa0379360:intron 45.0%
!! TGATGGAGTTTGTTGGTGTG+AGG + chr3_1:80468903-80468922 Msa0379360:intron 45.0%
GAGAAATGCTGTGACTGAGA+TGG + chr3_1:80468934-80468953 Msa0379360:intron 45.0%
AAATGCTGTGACTGAGATGG+TGG + chr3_1:80468937-80468956 Msa0379360:intron 45.0%
CGATTGAGTTTGATAAGCGG+AGG + chr3_1:80468993-80469012 Msa0379360:intron 45.0%
AGAGTTGCTTGGAGAGTTGA+AGG + chr3_1:80469016-80469035 Msa0379360:intron 45.0%
!! GAAAAGGGTGTTGCTTTGCA+AGG + chr3_1:80469066-80469085 Msa0379360:intron 45.0%
ACCAGGTCAAAAATGGACCA+GGG + chr3_1:80469237-80469256 Msa0379360:intron 45.0%
CTCTCAGAAGTGATGAAGAG+AGG + chr3_1:80469713-80469732 Msa0379360:CDS 45.0%
ACAGAGGACCGTACAATTTC+AGG - chr3_1:80469758-80469777 None:intergenic 45.0%
TTGCACCATGAAGCAAGGTT+GGG - chr3_1:80469910-80469929 None:intergenic 45.0%
TTTGCACCATGAAGCAAGGT+TGG - chr3_1:80469911-80469930 None:intergenic 45.0%
GACAGTGACCAATGCCTTAT+CGG + chr3_1:80470054-80470073 Msa0379360:CDS 45.0%
TTCTCATTGTTTCCGTACCG+AGG + chr3_1:80470158-80470177 Msa0379360:CDS 45.0%
GTAGGATGAGACTTGAGAGT+AGG - chr3_1:80470325-80470344 None:intergenic 45.0%
GATATGGCCTCCGAAGATTT+AGG + chr3_1:80470639-80470658 Msa0379360:CDS 45.0%
CATGGATGCCTGGTTTAGAA+CGG + chr3_1:80470694-80470713 Msa0379360:CDS 45.0%
! ATGCCTGGTTTAGAACGGTT+TGG + chr3_1:80470699-80470718 Msa0379360:CDS 45.0%
! TCACCAAACCGTTCTAAACC+AGG - chr3_1:80470705-80470724 None:intergenic 45.0%
!! TGGTTTAGAACGGTTTGGTG+AGG + chr3_1:80470704-80470723 Msa0379360:CDS 45.0%
TTATCAAGACCTCCTTCCGT+TGG + chr3_1:80470944-80470963 Msa0379360:intron 45.0%
TATCAAGACCTCCTTCCGTT+GGG + chr3_1:80470945-80470964 Msa0379360:intron 45.0%
CTTTGCATGCAGCTATAGTG+GGG - chr3_1:80471000-80471019 None:intergenic 45.0%
CCTTTGCATGCAGCTATAGT+GGG - chr3_1:80471001-80471020 None:intergenic 45.0%
ACTATAGCTGCATGCAAAGG+CGG + chr3_1:80471001-80471020 Msa0379360:intron 45.0%
TTGAGAACCTATATGGCTGG+CGG - chr3_1:80471561-80471580 None:intergenic 45.0%
TTATTGAACAACAGGCCGAG+TGG + chr3_1:80471806-80471825 Msa0379360:intron 45.0%
TATTGAACAACAGGCCGAGT+GGG + chr3_1:80471807-80471826 Msa0379360:intron 45.0%
TTACTCTTCTCAGTCCCACT+CGG - chr3_1:80471824-80471843 None:intergenic 45.0%
TAAATGGCAGTCGAAGGAGA+TGG + chr3_1:80471982-80472001 Msa0379360:intron 45.0%
GCCCAAATTAGGTGACTGAT+TGG + chr3_1:80472059-80472078 Msa0379360:intron 45.0%
ATTAGGTGACTGATTGGTGC+CGG + chr3_1:80472065-80472084 Msa0379360:intron 45.0%
GGTGAACCTTGACAAATGAC+CGG - chr3_1:80472087-80472106 None:intergenic 45.0%
CATTTGTCAAGGTTCACCCA+TGG + chr3_1:80472089-80472108 Msa0379360:intron 45.0%
!! CCCATGGTCCCTTTAATTTG+AGG + chr3_1:80472105-80472124 Msa0379360:intron 45.0%
! CCAGAAATTTTGAGCAGTGG+GGG - chr3_1:80472325-80472344 None:intergenic 45.0%
! GCCAGAAATTTTGAGCAGTG+GGG - chr3_1:80472326-80472345 None:intergenic 45.0%
! GAGCCAGAAATTTTGAGCAG+TGG - chr3_1:80472328-80472347 None:intergenic 45.0%
GTACTTCTGTTGGACGATAC+CGG - chr3_1:80472529-80472548 None:intergenic 45.0%
!! TCCAACAGAAGTACTTGTCC+CGG + chr3_1:80472535-80472554 Msa0379360:CDS 45.0%
AACGTGTGAACAAACTGTGG+CGG - chr3_1:80472590-80472609 None:intergenic 45.0%
AGACGGATCTGTCCTTATTC+CGG + chr3_1:80472673-80472692 Msa0379360:CDS 45.0%
ATATCAAGCCCTCCCATGAA+TGG - chr3_1:80472710-80472729 None:intergenic 45.0%
!!! TTTTTTTAATTTTAATAGAA+TGG - chr3_1:80471152-80471171 None:intergenic 5.0%
TGTGAATCCATGTCTCTCGC+CGG - chr3_1:80466016-80466035 None:intergenic 50.0%
AAGCGCGAAGAGGAACATGT+GGG - chr3_1:80466088-80466107 None:intergenic 50.0%
GGTGGTCGGAGATGTTTGAA+CGG - chr3_1:80466209-80466228 None:intergenic 50.0%
CAGGAAGTTGAGAGAGTTCG+TGG + chr3_1:80467078-80467097 Msa0379360:intron 50.0%
TCGTGGAGAGAGAAATGCAG+TGG + chr3_1:80467095-80467114 Msa0379360:CDS 50.0%
GTTAGTGTTTGGCGCTCAGA+TGG - chr3_1:80467147-80467166 None:intergenic 50.0%
GAAGGAGGGACTTACTGCTT+TGG + chr3_1:80467284-80467303 Msa0379360:CDS 50.0%
CATCCAGATGCTCCTATAGG+AGG + chr3_1:80467372-80467391 Msa0379360:CDS 50.0%
TCCAGATGCTCCTATAGGAG+GGG + chr3_1:80467374-80467393 Msa0379360:CDS 50.0%
GAAGAATCCTCCCCTCCTAT+AGG - chr3_1:80467387-80467406 None:intergenic 50.0%
!! GTTGCATGTTGGTCTTGCTC+AGG + chr3_1:80467476-80467495 Msa0379360:intron 50.0%
CAGGTCAAAAATGGACCAGG+GGG - chr3_1:80469239-80469258 None:intergenic 50.0%
CCAGGTCAAAAATGGACCAG+GGG - chr3_1:80469238-80469257 None:intergenic 50.0%
GACCAGGTCAAAAATGGACC+AGG - chr3_1:80469236-80469255 None:intergenic 50.0%
GAACCCACACCCCTTATGTT+TGG + chr3_1:80467961-80467980 Msa0379360:intron 50.0%
! GCACCAAACATAAGGGGTGT+GGG - chr3_1:80469198-80469217 None:intergenic 50.0%
CACGTGGCACCAAACATAAG+GGG - chr3_1:80469192-80469211 None:intergenic 50.0%
CCACGTGGCACCAAACATAA+GGG - chr3_1:80469191-80469210 None:intergenic 50.0%
TCCACGTGGCACCAAACATA+AGG - chr3_1:80469190-80469209 None:intergenic 50.0%
GGTTGAGAGACGGGAAAGAA+GGG - chr3_1:80468318-80468337 None:intergenic 50.0%
GATGAAGTGAAGGTCGGAGT+TGG + chr3_1:80468837-80468856 Msa0379360:intron 50.0%
!! AGTGAAGGTCGGAGTTGGTA+AGG + chr3_1:80468842-80468861 Msa0379360:intron 50.0%
!! GTGAAGGTCGGAGTTGGTAA+GGG + chr3_1:80468843-80468862 Msa0379360:intron 50.0%
!! GAGTTTGTTGGTGTGAGGAG+AGG + chr3_1:80468908-80468927 Msa0379360:intron 50.0%
!!! ACTGAGATGGTGGCGGTTTT+GGG + chr3_1:80468947-80468966 Msa0379360:intron 50.0%
ATAAGCGGAGGAGAGTTGCT+TGG + chr3_1:80469005-80469024 Msa0379360:intron 50.0%
GTTGCTTGGAGAGTTGAAGG+TGG + chr3_1:80469019-80469038 Msa0379360:intron 50.0%
TCCACGTGGCACCAAACATA+AGG + chr3_1:80469190-80469209 Msa0379360:intron 50.0%
CCACGTGGCACCAAACATAA+GGG + chr3_1:80469191-80469210 Msa0379360:intron 50.0%
CACGTGGCACCAAACATAAG+GGG + chr3_1:80469192-80469211 Msa0379360:intron 50.0%
! GCACCAAACATAAGGGGTGT+GGG + chr3_1:80469198-80469217 Msa0379360:intron 50.0%
GACCAGGTCAAAAATGGACC+AGG + chr3_1:80469236-80469255 Msa0379360:intron 50.0%
CCAGGTCAAAAATGGACCAG+GGG + chr3_1:80469238-80469257 Msa0379360:intron 50.0%
CAGGTCAAAAATGGACCAGG+GGG + chr3_1:80469239-80469258 Msa0379360:intron 50.0%
CATCTAACACGCTGCTTCAC+AGG + chr3_1:80469619-80469638 Msa0379360:intron 50.0%
! GGGTATTTTTCGCACGAGGT+TGG - chr3_1:80469799-80469818 None:intergenic 50.0%
ACCTCGTGCGAAAAATACCC+AGG + chr3_1:80469799-80469818 Msa0379360:CDS 50.0%
! ACCTGGGTATTTTTCGCACG+AGG - chr3_1:80469803-80469822 None:intergenic 50.0%
!! GAATCTCTGCAGTGCCGATA+AGG - chr3_1:80470071-80470090 None:intergenic 50.0%
GCACTGCAGAGATTCCTGTT+GGG + chr3_1:80470076-80470095 Msa0379360:CDS 50.0%
CACTGCAGAGATTCCTGTTG+GGG + chr3_1:80470077-80470096 Msa0379360:CDS 50.0%
ACTGCAGAGATTCCTGTTGG+GGG + chr3_1:80470078-80470097 Msa0379360:CDS 50.0%
TCCTGTTGGGGGACTTCATA+TGG + chr3_1:80470089-80470108 Msa0379360:CDS 50.0%
TCCATATGAAGTCCCCCAAC+AGG - chr3_1:80470093-80470112 None:intergenic 50.0%
AGCAGGTGCGCCTAAATCTT+CGG - chr3_1:80470652-80470671 None:intergenic 50.0%
ATTACCTCCCGGTCGAATTG+TGG + chr3_1:80470920-80470939 Msa0379360:intron 50.0%
TAATCCACAATTCGACCGGG+AGG - chr3_1:80470927-80470946 None:intergenic 50.0%
ACCTCCTTCCGTTGGGAATT+GGG + chr3_1:80470952-80470971 Msa0379360:intron 50.0%
CGTAATCCCCCAATTCCCAA+CGG - chr3_1:80470963-80470982 None:intergenic 50.0%
CCCACTATAGCTGCATGCAA+AGG + chr3_1:80470998-80471017 Msa0379360:intron 50.0%
GCCTTTGCATGCAGCTATAG+TGG - chr3_1:80471002-80471021 None:intergenic 50.0%
AAGGGGTAAATGGCAGTCGA+AGG + chr3_1:80471976-80471995 Msa0379360:intron 50.0%
!! TTGGTGCCGGTCATTTGTCA+AGG + chr3_1:80472078-80472097 Msa0379360:intron 50.0%
CCCCCACTGCTCAAAATTTC+TGG + chr3_1:80472322-80472341 Msa0379360:intron 50.0%
!! AAAATTTCTGGCTCCGCCAC+TGG + chr3_1:80472334-80472353 Msa0379360:intron 50.0%
AGACTATCAGAGCCGTCGAT+TGG + chr3_1:80472499-80472518 Msa0379360:CDS 50.0%
! GACTATCAGAGCCGTCGATT+GGG + chr3_1:80472500-80472519 Msa0379360:CDS 50.0%
GATACCGGATTCCCAATCGA+CGG - chr3_1:80472514-80472533 None:intergenic 50.0%
!! CCAACAGAAGTACTTGTCCC+GGG + chr3_1:80472536-80472555 Msa0379360:CDS 50.0%
GGACAGATCCGTCTTCTTGT+TGG - chr3_1:80472667-80472686 None:intergenic 50.0%
TCCTTATTCCGGAGCCATTG+AGG + chr3_1:80472684-80472703 Msa0379360:CDS 50.0%
ATGAATGGCCTCAATGGCTC+CGG - chr3_1:80472695-80472714 None:intergenic 50.0%
GAGCCATTGAGGCCATTCAT+GGG + chr3_1:80472695-80472714 Msa0379360:CDS 50.0%
CATTGAGGCCATTCATGGGA+GGG + chr3_1:80472699-80472718 Msa0379360:CDS 50.0%
GCTGTTGCGGCATTAGATTG+TGG + chr3_1:80472788-80472807 Msa0379360:three_prime_UTR 50.0%
ATGTCTCTCGCCGGTACTAG+TGG - chr3_1:80466007-80466026 None:intergenic 55.0%
!! ACTAGTACCGGCGAGAGACA+TGG + chr3_1:80466006-80466025 Msa0379360:exon 55.0%
GAAGCGCGAAGAGGAACATG+TGG - chr3_1:80466089-80466108 None:intergenic 55.0%
! AGGAGAAAGGAAGCGCGAAG+AGG - chr3_1:80466098-80466117 None:intergenic 55.0%
GCTTTGGTGAGGCGTGGAAA+TGG - chr3_1:80466166-80466185 None:intergenic 55.0%
! AGGTGGAGAGAGCTTTGGTG+AGG - chr3_1:80466177-80466196 None:intergenic 55.0%
GGAAGAGGTGGAGAGAGCTT+TGG - chr3_1:80466182-80466201 None:intergenic 55.0%
!! TGTTTGAACGGTGGCGGAAG+AGG - chr3_1:80466197-80466216 None:intergenic 55.0%
CGGAGATGTTTGAACGGTGG+CGG - chr3_1:80466203-80466222 None:intergenic 55.0%
GGTCGGAGATGTTTGAACGG+TGG - chr3_1:80466206-80466225 None:intergenic 55.0%
ATGACCTTGGTCGTCGGAGA+TGG - chr3_1:80466239-80466258 None:intergenic 55.0%
!! TCCCCTCCTATAGGAGCATC+TGG - chr3_1:80467378-80467397 None:intergenic 55.0%
AGATGCTCCTATAGGAGGGG+AGG + chr3_1:80467377-80467396 Msa0379360:CDS 55.0%
!! CCCCTGGTCCATTTTTGACC+TGG + chr3_1:80467924-80467943 Msa0379360:intron 55.0%
! TGACCTGGTCTTTGCTGACG+TGG + chr3_1:80467939-80467958 Msa0379360:intron 55.0%
GTTCCACGTCAGCAAAGACC+AGG - chr3_1:80467945-80467964 None:intergenic 55.0%
GGCACCAAACATAAGGGGTG+TGG - chr3_1:80469197-80469216 None:intergenic 55.0%
!! CCCTTATGTTTGGTGCCACG+TGG + chr3_1:80467971-80467990 Msa0379360:intron 55.0%
GAGAGACGGGAAAGAAGGGT+TGG - chr3_1:80468314-80468333 None:intergenic 55.0%
GGGTTGAGAGACGGGAAAGA+AGG - chr3_1:80468319-80468338 None:intergenic 55.0%
CGCAGTAGTGTTATCGGCGA+AGG - chr3_1:80468725-80468744 None:intergenic 55.0%
!! AAGGTCGGAGTTGGTAAGGG+TGG + chr3_1:80468846-80468865 Msa0379360:intron 55.0%
!! AGGTCGGAGTTGGTAAGGGT+GGG + chr3_1:80468847-80468866 Msa0379360:intron 55.0%
! TGCTGTGACTGAGATGGTGG+CGG + chr3_1:80468940-80468959 Msa0379360:intron 55.0%
!!! GACTGAGATGGTGGCGGTTT+TGG + chr3_1:80468946-80468965 Msa0379360:intron 55.0%
!!! GCGGTTTTGGGAGGAGTGTA+TGG + chr3_1:80468959-80468978 Msa0379360:intron 55.0%
! GGGAGGAGTGTATGGTGTTG+CGG + chr3_1:80468967-80468986 Msa0379360:intron 55.0%
!! CCCTTATGTTTGGTGCCACG+TGG - chr3_1:80467971-80467990 None:intergenic 55.0%
GGCACCAAACATAAGGGGTG+TGG + chr3_1:80469197-80469216 Msa0379360:intron 55.0%
GCACCCACACCCCTTATGTT+TGG - chr3_1:80469204-80469223 None:intergenic 55.0%
! TGACCTGGTCTTTGCTGACG+TGG - chr3_1:80467939-80467958 None:intergenic 55.0%
!! CCCCTGGTCCATTTTTGACC+TGG - chr3_1:80467924-80467943 None:intergenic 55.0%
TGAGGCCCAACCTTGCTTCA+TGG + chr3_1:80469902-80469921 Msa0379360:intron 55.0%
!! CTGCAGTGCCGATAAGGCAT+TGG - chr3_1:80470065-80470084 None:intergenic 55.0%
GGCACTGCAGAGATTCCTGT+TGG + chr3_1:80470075-80470094 Msa0379360:CDS 55.0%
CATTGTTTCCGTACCGAGGC+AGG + chr3_1:80470162-80470181 Msa0379360:CDS 55.0%
AGGTGCGCCTAAATCTTCGG+AGG - chr3_1:80470649-80470668 None:intergenic 55.0%
GATGTTGAGGCATGGATGCC+TGG + chr3_1:80470684-80470703 Msa0379360:CDS 55.0%
GACCTCCTTCCGTTGGGAAT+TGG + chr3_1:80470951-80470970 Msa0379360:intron 55.0%
CCTCCTTCCGTTGGGAATTG+GGG + chr3_1:80470953-80470972 Msa0379360:intron 55.0%
CTCCTTCCGTTGGGAATTGG+GGG + chr3_1:80470954-80470973 Msa0379360:intron 55.0%
ATCCCCCAATTCCCAACGGA+AGG - chr3_1:80470959-80470978 None:intergenic 55.0%
AACCTATATGGCTGGCGGTG+GGG - chr3_1:80471556-80471575 None:intergenic 55.0%
GAACCTATATGGCTGGCGGT+GGG - chr3_1:80471557-80471576 None:intergenic 55.0%
AGAACCTATATGGCTGGCGG+TGG - chr3_1:80471558-80471577 None:intergenic 55.0%
TTAGTGCATGCAGCCAGTGG+CGG - chr3_1:80472350-80472369 None:intergenic 55.0%
GACTTAGTGCATGCAGCCAG+TGG - chr3_1:80472353-80472372 None:intergenic 55.0%
! AGAGCCGTCGATTGGGAATC+CGG + chr3_1:80472507-80472526 Msa0379360:CDS 55.0%
CCCGGGACAAGTACTTCTGT+TGG - chr3_1:80472539-80472558 None:intergenic 55.0%
GCCTCAATGGCTCCGGAATA+AGG - chr3_1:80472688-80472707 None:intergenic 55.0%
GGAGCCATTGAGGCCATTCA+TGG + chr3_1:80472694-80472713 Msa0379360:CDS 55.0%
CCTCCCATGAATGGCCTCAA+TGG - chr3_1:80472701-80472720 None:intergenic 55.0%
CCATTGAGGCCATTCATGGG+AGG + chr3_1:80472698-80472717 Msa0379360:CDS 55.0%
! GAGAGAGCTTTGGTGAGGCG+TGG - chr3_1:80466172-80466191 None:intergenic 60.0%
!! TTGAACGGTGGCGGAAGAGG+TGG - chr3_1:80466194-80466213 None:intergenic 60.0%
!! GAGATGGTGGTGGTGGTGGT+CGG - chr3_1:80466223-80466242 None:intergenic 60.0%
! TTGGTCGTCGGAGATGGTGG+TGG - chr3_1:80466233-80466252 None:intergenic 60.0%
ACCACCATCTCCGACGACCA+AGG + chr3_1:80466232-80466251 Msa0379360:CDS 60.0%
ACCTTGGTCGTCGGAGATGG+TGG - chr3_1:80466236-80466255 None:intergenic 60.0%
!! CTTTGGCAGTTTTGGCCCCC+TGG + chr3_1:80467908-80467927 Msa0379360:intron 60.0%
!! GGTCGGAGTTGGTAAGGGTG+GGG + chr3_1:80468848-80468867 Msa0379360:intron 60.0%
!! GTCGGAGTTGGTAAGGGTGG+GGG + chr3_1:80468849-80468868 Msa0379360:intron 60.0%
!!! GAGATGGTGGCGGTTTTGGG+AGG + chr3_1:80468950-80468969 Msa0379360:intron 60.0%
GTGCCACGTCAGCAAAGACC+AGG + chr3_1:80469220-80469239 Msa0379360:intron 60.0%
!! CTTTGGCAGTTTTGGCCCCC+TGG - chr3_1:80467908-80467927 None:intergenic 60.0%
CACGCTGCTTCACAGGTCAG+TGG + chr3_1:80469626-80469645 Msa0379360:intron 60.0%
! GTGCTGCTGGCACTGCAACA+AGG + chr3_1:80470184-80470203 Msa0379360:CDS 60.0%
CCCCAATTCCCAACGGAAGG+AGG - chr3_1:80470956-80470975 None:intergenic 60.0%
!! GTCGGAGATGGTGGTGGTGG+TGG - chr3_1:80466227-80466246 None:intergenic 65.0%
!! GTCGTCGGAGATGGTGGTGG+TGG - chr3_1:80466230-80466249 None:intergenic 65.0%
! GGGGCCGGAACCGCAACTTT+TGG - chr3_1:80467847-80467866 None:intergenic 65.0%
CAGCAGCACCTGCCTCGGTA+CGG - chr3_1:80470173-80470192 None:intergenic 65.0%
AGTGCCAGCAGCACCTGCCT+CGG - chr3_1:80470178-80470197 None:intergenic 65.0%
GTCCCCACCGCCAGCCATAT+AGG + chr3_1:80471551-80471570 Msa0379360:intron 65.0%
! CGTACCGAGGCAGGTGCTGC+TGG + chr3_1:80470171-80470190 Msa0379360:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 80465999 80473034 80465999 ID=Msa0379360;Name=Msa0379360
chr3_1 mRNA 80465999 80473034 80465999 ID=Msa0379360-mRNA-1;Parent=Msa0379360;Name=Msa0379360-mRNA-1;_AED=0.13;_eAED=0.13;_QI=26|1|1|1|0.88|1|10|286|520
chr3_1 exon 80465999 80466253 80465999 ID=Msa0379360-mRNA-1:exon:20075;Parent=Msa0379360-mRNA-1
chr3_1 exon 80466361 80466509 80466361 ID=Msa0379360-mRNA-1:exon:20076;Parent=Msa0379360-mRNA-1
chr3_1 exon 80467081 80467174 80467081 ID=Msa0379360-mRNA-1:exon:20077;Parent=Msa0379360-mRNA-1
chr3_1 exon 80467274 80467422 80467274 ID=Msa0379360-mRNA-1:exon:20078;Parent=Msa0379360-mRNA-1
chr3_1 exon 80467550 80467642 80467550 ID=Msa0379360-mRNA-1:exon:20079;Parent=Msa0379360-mRNA-1
chr3_1 exon 80469641 80469820 80469641 ID=Msa0379360-mRNA-1:exon:20080;Parent=Msa0379360-mRNA-1
chr3_1 exon 80470039 80470205 80470039 ID=Msa0379360-mRNA-1:exon:20081;Parent=Msa0379360-mRNA-1
chr3_1 exon 80470410 80470544 80470410 ID=Msa0379360-mRNA-1:exon:20082;Parent=Msa0379360-mRNA-1
chr3_1 exon 80470632 80470725 80470632 ID=Msa0379360-mRNA-1:exon:20083;Parent=Msa0379360-mRNA-1
chr3_1 exon 80472476 80473034 80472476 ID=Msa0379360-mRNA-1:exon:20084;Parent=Msa0379360-mRNA-1
chr3_1 five_prime_UTR 80465999 80466024 80465999 ID=Msa0379360-mRNA-1:five_prime_utr;Parent=Msa0379360-mRNA-1
chr3_1 CDS 80466025 80466253 80466025 ID=Msa0379360-mRNA-1:cds;Parent=Msa0379360-mRNA-1
chr3_1 CDS 80466361 80466509 80466361 ID=Msa0379360-mRNA-1:cds;Parent=Msa0379360-mRNA-1
chr3_1 CDS 80467081 80467174 80467081 ID=Msa0379360-mRNA-1:cds;Parent=Msa0379360-mRNA-1
chr3_1 CDS 80467274 80467422 80467274 ID=Msa0379360-mRNA-1:cds;Parent=Msa0379360-mRNA-1
chr3_1 CDS 80467550 80467642 80467550 ID=Msa0379360-mRNA-1:cds;Parent=Msa0379360-mRNA-1
chr3_1 CDS 80469641 80469820 80469641 ID=Msa0379360-mRNA-1:cds;Parent=Msa0379360-mRNA-1
chr3_1 CDS 80470039 80470205 80470039 ID=Msa0379360-mRNA-1:cds;Parent=Msa0379360-mRNA-1
chr3_1 CDS 80470410 80470544 80470410 ID=Msa0379360-mRNA-1:cds;Parent=Msa0379360-mRNA-1
chr3_1 CDS 80470632 80470725 80470632 ID=Msa0379360-mRNA-1:cds;Parent=Msa0379360-mRNA-1
chr3_1 CDS 80472476 80472748 80472476 ID=Msa0379360-mRNA-1:cds;Parent=Msa0379360-mRNA-1
chr3_1 three_prime_UTR 80472749 80473034 80472749 ID=Msa0379360-mRNA-1:three_prime_utr;Parent=Msa0379360-mRNA-1
Gene Sequence

>Msa0379360

ATGGATTCACATTGTTATCTTCACAGAACAACCTTCCAAACTCTCAAACTCAGTTCAACTCCCACATGTTCCTCTTCGCGCTTCCTTTCTCCTCCACTTCACAAAACCAAAATTCCAACCATTCATTCCCACAAATTTCCATTTCCACGCCTCACCAAAGCTCTCTCCACCTCTTCCGCCACCGTTCAAACATCTCCGACCACCACCACCACCATCTCCGACGACCAAGGTGGAAAACCTCAATGGAAAGCTACTATAGACTTCAAGTGGATCAAGGATAACAAAGAAACTGTTGCTGTTAATATAAAGAACCGCAATTCTGATGCTAATTTGGAACTCATTCTTCATCTTTATGATAAATTGTTTATTCTTCAGAAGGAAGTTGAGAGAGTTCGTGGAGAGAGAAATGCAGTGGCTAATAAGATGAAGGGAAAATTAGAACCATCTGAGCGCCAAACACTAACTGAACAAGGGAAGAATTTGAAGGAGGGACTTACTGCTTTGGAAGAAGACCTGGTGAAGCTTAATGATGAGCTTCAACGGGAGGCGCAGTGTATACCAAACATGACTCATCCAGATGCTCCTATAGGAGGGGAGGATTCTTCCACAATAAGGAAGACGGTTGGCAGCTCTCCTAAATTTAGTTTTCCTGTCAAGGATCATCTCCAACTTGGAAAGGAACTTGATCTTTTTGATTTTGATGCTGCTGCAGAGGTCAGTGGTTCAAAGTTCTACTACCTGAAAAATGAAGCAGTTCTATTAGAGATGGCTCTTCTCAATTGGACGCTCTCAGAAGTGATGAAGAGAGGCTTTACTCCACTAACAACACCTGAAATTGTACGGTCCTCTGTTGTTGAAAAATGTGGGTTCCAACCTCGTGCGAAAAATACCCAGGTTTATTCTATCGATGACAGTGACCAATGCCTTATCGGCACTGCAGAGATTCCTGTTGGGGGACTTCATATGGATTCTATACTTGCTGACTCAATGTTGCCCTTAAAATATGTCGCATTTTCTCATTGTTTCCGTACCGAGGCAGGTGCTGCTGGCACTGCAACAAGAGGTCTTTATCGTGTCCACCAATTCAGCAAAATTGAAATGTTTATTTTCTGCCGCCCAGAAGAGAGTGATTATTACCACGAAGAACTTATTAAAATTGAAGAAGACATATTCTCATCCCTAGGGTTACATTTCAAAACTTTGGATATGGCCTCCGAAGATTTAGGCGCACCTGCTTATCGTAAATTTGATGTTGAGGCATGGATGCCTGGTTTAGAACGGTTTGGTGAGATCTCAAGCGCATCAAATTGCACAGACTATCAGAGCCGTCGATTGGGAATCCGGTATCGTCCAACAGAAGTACTTGTCCCGGGTCCAAAAAAATCTAAAGGCAATCTCGCTCCGCCACAGTTTGTTCACACGTTAAACGCAACAGCATGTGCTGTACCACGAATGATTATATGTCTACTTGAGAATTACCAACAAGAAGACGGATCTGTCCTTATTCCGGAGCCATTGAGGCCATTCATGGGAGGGCTTGATATTATCACAAGAAAATCATGA
Protein sequence

>Msa0379360

MDSHCYLHRTTFQTLKLSSTPTCSSSRFLSPPLHKTKIPTIHSHKFPFPRLTKALSTSSATVQTSPTTTTTISDDQGGKPQWKATIDFKWIKDNKETVAVNIKNRNSDANLELILHLYDKLFILQKEVERVRGERNAVANKMKGKLEPSERQTLTEQGKNLKEGLTALEEDLVKLNDELQREAQCIPNMTHPDAPIGGEDSSTIRKTVGSSPKFSFPVKDHLQLGKELDLFDFDAAAEVSGSKFYYLKNEAVLLEMALLNWTLSEVMKRGFTPLTTPEIVRSSVVEKCGFQPRAKNTQVYSIDDSDQCLIGTAEIPVGGLHMDSILADSMLPLKYVAFSHCFRTEAGAAGTATRGLYRVHQFSKIEMFIFCRPEESDYYHEELIKIEEDIFSSLGLHFKTLDMASEDLGAPAYRKFDVEAWMPGLERFGEISSASNCTDYQSRRLGIRYRPTEVLVPGPKKSKGNLAPPQFVHTLNATACAVPRMIICLLENYQQEDGSVLIPEPLRPFMGGLDIITRKS*