AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0543010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0543010 MtrunA17_Chr4g0022631 98.565 209 3 0 1 209 82 290 8.35e-153 425
Msa0543010 MtrunA17_Chr2g0323531 80.769 208 40 0 1 208 79 286 2.64e-125 355
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0543010 AT2G20890.1 80.383 209 41 0 1 209 75 283 1.31e-126 359

Find 48 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATGGAACCAACAATTT+TGG 0.156594 4_1:-28367538 Msa0543010:CDS
AGAAGTTGAGGGGACTTTAA+AGG 0.233722 4_1:-28367649 Msa0543010:CDS
CTAACTCAAGAAGACGAAAA+AGG 0.351619 4_1:+28367565 None:intergenic
GAAAAGTGTTGATCGAGATT+TGG 0.352732 4_1:-28366935 Msa0543010:CDS
CTCTAGATGAAAACTCAATC+AGG 0.355791 4_1:+28367676 None:intergenic
GCAGAAAGAGCGGGTGGAAA+TGG 0.361398 4_1:-28367621 Msa0543010:CDS
ACACTCGTTCTAACCTGTAT+TGG 0.374794 4_1:+28368390 None:intergenic
TGTATCTCATCAAATGTTGC+TGG 0.375097 4_1:+28368552 None:intergenic
TATGATCCTGTATTTGCTCT+TGG 0.383099 4_1:-28368515 Msa0543010:CDS
GTCAATTCAACAGCTTTGTT+CGG 0.404439 4_1:-28366974 Msa0543010:intron
CAGAAAGAGCGGGTGGAAAT+GGG 0.407573 4_1:-28367620 Msa0543010:CDS
CACTCGTTCTAACCTGTATT+GGG 0.413367 4_1:+28368391 None:intergenic
TCGCAATCTGCTTTCTAAGT+TGG 0.429863 4_1:-28366905 Msa0543010:CDS
GAAGAAGAAAATAGAAGAAA+GGG 0.446296 4_1:-28366332 Msa0543010:CDS
AGAAGAAGAAAATAGAAGAA+AGG 0.447419 4_1:-28366333 Msa0543010:CDS
TATCTACAACTCTGTGCTAC+AGG 0.458194 4_1:-28368585 Msa0543010:CDS
AGCATACATTAACGCATTGA+AGG 0.462951 4_1:-28368423 Msa0543010:CDS
AGGAAGATCCAGCCCAATAC+AGG 0.469089 4_1:-28368403 Msa0543010:intron
AGAAAGGGCTGAACCACAAA+AGG 0.489128 4_1:-28366317 Msa0543010:CDS
CGTTCTAACCTGTATTGGGC+TGG 0.491069 4_1:+28368395 None:intergenic
TGCTAAAGGAATACATTGAC+AGG 0.497269 4_1:-28366867 Msa0543010:intron
TGCACAGAAGTTAGAAGAGT+GGG 0.505507 4_1:-28367721 Msa0543010:CDS
ATCTAGAGAAGGAGAAGTTG+AGG 0.517674 4_1:-28367661 Msa0543010:CDS
TCAATGCGTTAATGTATGCT+TGG 0.520925 4_1:+28368426 None:intergenic
ACAAAGCCAAGAGCAAATAC+AGG 0.548987 4_1:+28368509 None:intergenic
TCTAGAGAAGGAGAAGTTGA+GGG 0.549571 4_1:-28367660 Msa0543010:CDS
TGAACCACAAAAGGCTAATG+AGG 0.552905 4_1:-28366308 Msa0543010:CDS
ACAAGCTAAAGAGCTGCTAA+AGG 0.557940 4_1:-28366881 Msa0543010:CDS
AAGGATATTGCAGAAAGAGC+GGG 0.557982 4_1:-28367630 Msa0543010:CDS
CACTGTATATGACCAACTCA+TGG 0.564562 4_1:-28368486 Msa0543010:CDS
TAGGATACCCTTCCATGAGT+TGG 0.569068 4_1:+28368474 None:intergenic
TATAGTCGTTTCTTTGCAGT+AGG 0.573306 4_1:-28367588 Msa0543010:CDS
GTATATGACCAACTCATGGA+AGG 0.575651 4_1:-28368482 Msa0543010:CDS
TCTTGAGTTAGCAAATGCAA+TGG 0.577069 4_1:-28367553 Msa0543010:CDS
TCTAGATGAAAACTCAATCA+GGG 0.581656 4_1:+28367677 None:intergenic
GAGTTGTAGATACTAGGTAT+TGG 0.583403 4_1:+28368596 None:intergenic
AGCACAGAGTTGTAGATACT+AGG 0.593993 4_1:+28368590 None:intergenic
GCATCTCTATCCTCATCACT+AGG 0.603750 4_1:+28368455 None:intergenic
AAAGGATATTGCAGAAAGAG+CGG 0.616391 4_1:-28367631 Msa0543010:CDS
AGAAAGAGCGGGTGGAAATG+GGG 0.617727 4_1:-28367619 Msa0543010:CDS
ATGCACAGAAGTTAGAAGAG+TGG 0.618365 4_1:-28367722 Msa0543010:CDS
GTTAATGTATGCTTGGAAGA+TGG 0.618779 4_1:+28368433 None:intergenic
GAGCAAATACAGGATCATAA+CGG 0.626380 4_1:+28368519 None:intergenic
AAGTTAGAAGAGTGGGCTCG+TGG 0.635186 4_1:-28367714 Msa0543010:CDS
TATATGACCAACTCATGGAA+GGG 0.644279 4_1:-28368481 Msa0543010:CDS
CTAGAGAAGGAGAAGTTGAG+GGG 0.650582 4_1:-28367659 Msa0543010:CDS
GATATTGCAGAAAGAGCGGG+TGG 0.670621 4_1:-28367627 Msa0543010:CDS
GGAAGGGTATCCTAGTGATG+AGG 0.675183 4_1:-28368465 Msa0543010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAATAAAGGAAATAAT+GGG + chr4_1:28367943-28367962 None:intergenic 10.0%
!! TATATAAATAAAGGAAATAA+TGG + chr4_1:28367944-28367963 None:intergenic 10.0%
!!! TCAATTTTCTATATAAATAA+AGG + chr4_1:28367953-28367972 None:intergenic 10.0%
!! ATTTGTTCAAAATCAAATAT+AGG + chr4_1:28367400-28367419 None:intergenic 15.0%
!! ACTCAAATATTATATATCAT+AGG + chr4_1:28368414-28368433 None:intergenic 15.0%
!! CATAGTATTATCTTGATAAA+AGG + chr4_1:28366403-28366422 None:intergenic 20.0%
!!! TTTTTATTTCTTTTCCCTTT+TGG + chr4_1:28366472-28366491 None:intergenic 20.0%
!! ACTCAATGATTGAAATATAA+TGG - chr4_1:28366888-28366907 Msa0543010:CDS 20.0%
!! AATAATCTAATTCTGGATTT+GGG - chr4_1:28366948-28366967 Msa0543010:CDS 20.0%
!!! AAATATTTTATAGAGGATGA+TGG - chr4_1:28367094-28367113 Msa0543010:intron 20.0%
!! TATCATGACAAAAATGAATT+GGG + chr4_1:28367698-28367717 None:intergenic 20.0%
!! ATATCATGACAAAAATGAAT+TGG + chr4_1:28367699-28367718 None:intergenic 20.0%
!! AACTGAAAAACTTAGTAAAT+AGG + chr4_1:28368635-28368654 None:intergenic 20.0%
!!! ACTATTGTATTTTCTGAAAA+AGG + chr4_1:28368691-28368710 None:intergenic 20.0%
!!! ATTTTGATTCTTTTACTTCA+GGG - chr4_1:28368845-28368864 Msa0543010:intron 20.0%
! GAAGTATGAATTTGCAATTT+AGG + chr4_1:28366450-28366469 None:intergenic 25.0%
!!! ATGACTAAGTATTGATAACA+AGG + chr4_1:28366507-28366526 None:intergenic 25.0%
! TTGTTATCAATACTTAGTCA+TGG - chr4_1:28366506-28366525 Msa0543010:intron 25.0%
!! GACAAAGTTAAATTTTCTCA+AGG - chr4_1:28366571-28366590 Msa0543010:intron 25.0%
! CAAATCCAGAATTAGATTAT+TGG + chr4_1:28366949-28366968 None:intergenic 25.0%
! CAATAATCTAATTCTGGATT+TGG - chr4_1:28366947-28366966 Msa0543010:CDS 25.0%
! ATAATCTAATTCTGGATTTG+GGG - chr4_1:28366949-28366968 Msa0543010:CDS 25.0%
!! TCGCTCAAAATATTTTATAG+AGG - chr4_1:28367087-28367106 Msa0543010:intron 25.0%
! CAAGAACTAATAATTTAAGC+AGG + chr4_1:28367136-28367155 None:intergenic 25.0%
!! TTGTATGATAATGTTGTCAT+TGG - chr4_1:28367153-28367172 Msa0543010:intron 25.0%
! TCATTTAACAATAATCATCG+AGG + chr4_1:28367212-28367231 None:intergenic 25.0%
!! TTGATTTTGAACAAATGTCA+CGG - chr4_1:28367404-28367423 Msa0543010:intron 25.0%
!!! AATAAGTATTGGACTAAGTT+GGG + chr4_1:28367728-28367747 None:intergenic 25.0%
!!! AAATAAGTATTGGACTAAGT+TGG + chr4_1:28367729-28367748 None:intergenic 25.0%
!! AATGATTAGTTATCTAGAAC+TGG + chr4_1:28367810-28367829 None:intergenic 25.0%
! TTCATCGGTAATAAACATTT+AGG - chr4_1:28368037-28368056 Msa0543010:intron 25.0%
!! GTGATCTCAATTTTATGAAA+AGG + chr4_1:28368546-28368565 None:intergenic 25.0%
!!! TTTACTAAGTTTTTCAGTTC+AGG - chr4_1:28368636-28368655 Msa0543010:intron 25.0%
!!! TTACTAAGTTTTTCAGTTCA+GGG - chr4_1:28368637-28368656 Msa0543010:intron 25.0%
! TCATAACATGTCGAAAATTT+AGG + chr4_1:28368797-28368816 None:intergenic 25.0%
!!! TGTTATGATTATAACTTGCT+TGG - chr4_1:28368809-28368828 Msa0543010:intron 25.0%
!!! GATTTTGATTCTTTTACTTC+AGG - chr4_1:28368844-28368863 Msa0543010:intron 25.0%
! AGAAGAAGAAAATAGAAGAA+AGG - chr4_1:28368868-28368887 Msa0543010:intron 25.0%
! GAAGAAGAAAATAGAAGAAA+GGG - chr4_1:28368869-28368888 Msa0543010:intron 25.0%
GTGGTTTAAATATAATCAGC+AGG - chr4_1:28366304-28366323 Msa0543010:CDS 30.0%
!! GTTGTGAATAGTTCTGAATT+TGG - chr4_1:28366422-28366441 Msa0543010:intron 30.0%
TGCAAATTCATACTTCCAAA+AGG - chr4_1:28366454-28366473 Msa0543010:intron 30.0%
GCAAATTCATACTTCCAAAA+GGG - chr4_1:28366455-28366474 Msa0543010:intron 30.0%
!!! GAGTGGTTTTTGTTTTTAAG+TGG - chr4_1:28366846-28366865 Msa0543010:intron 30.0%
!! CAATCATTGAGTTGAACATA+TGG + chr4_1:28366880-28366899 None:intergenic 30.0%
AGATGATTTAACACAGTCTA+CGG + chr4_1:28366924-28366943 None:intergenic 30.0%
TCTCACCAATAATCTAATTC+TGG - chr4_1:28366941-28366960 Msa0543010:CDS 30.0%
TAATCTAATTCTGGATTTGG+GGG - chr4_1:28366950-28366969 Msa0543010:CDS 30.0%
TCACAAATCACAAAATCATG+TGG + chr4_1:28367055-28367074 None:intergenic 30.0%
!! TGTGATTTGTGAATCACTTT+TGG - chr4_1:28367063-28367082 Msa0543010:intron 30.0%
TCTAGATGAAAACTCAATCA+GGG + chr4_1:28367527-28367546 None:intergenic 30.0%
! ATTGAGTTTTCATCTAGAGA+AGG - chr4_1:28367529-28367548 Msa0543010:intron 30.0%
! GTAACCTTTTCCAAAATTGT+TGG + chr4_1:28367676-28367695 None:intergenic 30.0%
!! TAACAAATTAAGTTGGCAAC+AGG + chr4_1:28367848-28367867 None:intergenic 30.0%
CTTCAGCTAACAAATTAAGT+TGG + chr4_1:28367855-28367874 None:intergenic 30.0%
ATATGACTATCATCAGACTA+TGG - chr4_1:28368104-28368123 Msa0543010:intron 30.0%
AATAGACACATTCACAATCT+TGG + chr4_1:28368153-28368172 None:intergenic 30.0%
! TAAGTTGTTCTCACTTCTTT+TGG - chr4_1:28368381-28368400 Msa0543010:intron 30.0%
! AAGTTGTTCTCACTTCTTTT+GGG - chr4_1:28368382-28368401 Msa0543010:intron 30.0%
TGAAGACTAAATGTAGCATA+TGG + chr4_1:28368462-28368481 None:intergenic 30.0%
GATTCAATCTTGAACTTCAA+GGG + chr4_1:28368509-28368528 None:intergenic 30.0%
AGATTCAATCTTGAACTTCA+AGG + chr4_1:28368510-28368529 None:intergenic 30.0%
CTTCTAATTGAAAACTAAGC+TGG - chr4_1:28368606-28368625 Msa0543010:CDS 30.0%
! CATGTCGAAAATTTAGGTTA+AGG + chr4_1:28368791-28368810 None:intergenic 30.0%
!!! TATAACTTGCTTGGTTTTTG+CGG - chr4_1:28368818-28368837 Msa0543010:intron 30.0%
AATATAATCAGCAGGTGATG+CGG - chr4_1:28366312-28366331 Msa0543010:CDS 35.0%
AACTTTGTCTCAGAAACAGT+TGG + chr4_1:28366560-28366579 None:intergenic 35.0%
GAGTTGTAGATACTAGGTAT+TGG + chr4_1:28366608-28366627 None:intergenic 35.0%
TGTATCTCATCAAATGTTGC+TGG + chr4_1:28366652-28366671 None:intergenic 35.0%
GAGCAAATACAGGATCATAA+CGG + chr4_1:28366685-28366704 None:intergenic 35.0%
TATGATCCTGTATTTGCTCT+TGG - chr4_1:28366686-28366705 Msa0543010:intron 35.0%
TATATGACCAACTCATGGAA+GGG - chr4_1:28366720-28366739 Msa0543010:intron 35.0%
GTTAATGTATGCTTGGAAGA+TGG + chr4_1:28366771-28366790 None:intergenic 35.0%
TCAATGCGTTAATGTATGCT+TGG + chr4_1:28366778-28366797 None:intergenic 35.0%
AGCATACATTAACGCATTGA+AGG - chr4_1:28366778-28366797 Msa0543010:intron 35.0%
!! TTGAGTTGAACATATGGTGT+AGG + chr4_1:28366874-28366893 None:intergenic 35.0%
!! ATTTGTAGCTCTGATTGAGT+GGG + chr4_1:28367017-28367036 None:intergenic 35.0%
!! AATTTGTAGCTCTGATTGAG+TGG + chr4_1:28367018-28367037 None:intergenic 35.0%
ATGAGATGCAAATTTGTCTC+TGG + chr4_1:28367293-28367312 None:intergenic 35.0%
GACAGTGATAATTGCACTAA+AGG + chr4_1:28367357-28367376 None:intergenic 35.0%
AGTGCAATTATCACTGTCTT+TGG - chr4_1:28367359-28367378 Msa0543010:intron 35.0%
CTCTAGATGAAAACTCAATC+AGG + chr4_1:28367528-28367547 None:intergenic 35.0%
AAAGGATATTGCAGAAAGAG+CGG - chr4_1:28367570-28367589 Msa0543010:CDS 35.0%
TATAGTCGTTTCTTTGCAGT+AGG - chr4_1:28367613-28367632 Msa0543010:CDS 35.0%
CTAACTCAAGAAGACGAAAA+AGG + chr4_1:28367639-28367658 None:intergenic 35.0%
TCTTGAGTTAGCAAATGCAA+TGG - chr4_1:28367648-28367667 Msa0543010:CDS 35.0%
! TGCAATGGAACCAACAATTT+TGG - chr4_1:28367663-28367682 Msa0543010:CDS 35.0%
!! GGAACCAACAATTTTGGAAA+AGG - chr4_1:28367669-28367688 Msa0543010:CDS 35.0%
!! ATTAAGTTGGCAACAGGAAT+TGG + chr4_1:28367842-28367861 None:intergenic 35.0%
GCATTACTCAGTAACTTTGA+AGG - chr4_1:28368003-28368022 Msa0543010:intron 35.0%
! TCTACCACTAATAGTTTGTG+TGG - chr4_1:28368172-28368191 Msa0543010:intron 35.0%
TGTTGAATTGACGACATAAG+AGG + chr4_1:28368219-28368238 None:intergenic 35.0%
!! GTCAATTCAACAGCTTTGTT+CGG - chr4_1:28368227-28368246 Msa0543010:intron 35.0%
!! GAAAAGTGTTGATCGAGATT+TGG - chr4_1:28368266-28368285 Msa0543010:intron 35.0%
TGCTAAAGGAATACATTGAC+AGG - chr4_1:28368334-28368353 Msa0543010:intron 35.0%
AACAACTTAGTAGCATTGCA+AGG + chr4_1:28368370-28368389 None:intergenic 35.0%
!! AGTTTTTCAGTTCAGGGTTT+AGG - chr4_1:28368643-28368662 Msa0543010:intron 35.0%
TGATATACTGAGAACTTAGC+AGG - chr4_1:28368724-28368743 Msa0543010:intron 35.0%
TTGTCTCAGAAACAGTTGGA+GGG + chr4_1:28366556-28366575 None:intergenic 40.0%
TTTGTCTCAGAAACAGTTGG+AGG + chr4_1:28366557-28366576 None:intergenic 40.0%
AGCACAGAGTTGTAGATACT+AGG + chr4_1:28366614-28366633 None:intergenic 40.0%
TATCTACAACTCTGTGCTAC+AGG - chr4_1:28366616-28366635 Msa0543010:intron 40.0%
ACAAAGCCAAGAGCAAATAC+AGG + chr4_1:28366695-28366714 None:intergenic 40.0%
CACTGTATATGACCAACTCA+TGG - chr4_1:28366715-28366734 Msa0543010:intron 40.0%
GTATATGACCAACTCATGGA+AGG - chr4_1:28366719-28366738 Msa0543010:intron 40.0%
CACTCGTTCTAACCTGTATT+GGG + chr4_1:28366813-28366832 None:intergenic 40.0%
ACACTCGTTCTAACCTGTAT+TGG + chr4_1:28366814-28366833 None:intergenic 40.0%
AGTGTTTGTATGTCTGTGAG+TGG - chr4_1:28366829-28366848 Msa0543010:intron 40.0%
TGGGGTTTCGAAATCATGTT+TGG + chr4_1:28366991-28367010 None:intergenic 40.0%
ATGCACAGAAGTTAGAAGAG+TGG - chr4_1:28367479-28367498 Msa0543010:intron 40.0%
TGCACAGAAGTTAGAAGAGT+GGG - chr4_1:28367480-28367499 Msa0543010:intron 40.0%
ATCTAGAGAAGGAGAAGTTG+AGG - chr4_1:28367540-28367559 Msa0543010:CDS 40.0%
TCTAGAGAAGGAGAAGTTGA+GGG - chr4_1:28367541-28367560 Msa0543010:CDS 40.0%
AGAAGTTGAGGGGACTTTAA+AGG - chr4_1:28367552-28367571 Msa0543010:CDS 40.0%
AAGGATATTGCAGAAAGAGC+GGG - chr4_1:28367571-28367590 Msa0543010:CDS 40.0%
CATGTTCAGGCTTCATTAGA+GGG - chr4_1:28367911-28367930 Msa0543010:intron 40.0%
ATGTTCAGGCTTCATTAGAG+GGG - chr4_1:28367912-28367931 Msa0543010:intron 40.0%
AAGGAGAATGCTGCATTCAT+CGG - chr4_1:28368022-28368041 Msa0543010:intron 40.0%
TTAGGATGCACAAAAATCGC+TGG - chr4_1:28368055-28368074 Msa0543010:intron 40.0%
TGCACAAAAATCGCTGGTAA+AGG - chr4_1:28368061-28368080 Msa0543010:intron 40.0%
! CACTAATAGTTTGTGTGGCT+GGG - chr4_1:28368177-28368196 Msa0543010:intron 40.0%
TCGCAATCTGCTTTCTAAGT+TGG - chr4_1:28368296-28368315 Msa0543010:intron 40.0%
ACAAGCTAAAGAGCTGCTAA+AGG - chr4_1:28368320-28368339 Msa0543010:intron 40.0%
TCTTGAACTTCAAGGGCTAA+TGG + chr4_1:28368502-28368521 None:intergenic 40.0%
GAACTTAGCAGGTTATAGTC+AGG - chr4_1:28368735-28368754 Msa0543010:intron 40.0%
TGAACCACAAAAGGCTAATG+AGG - chr4_1:28368893-28368912 Msa0543010:intron 40.0%
TAGGATACCCTTCCATGAGT+TGG + chr4_1:28366730-28366749 None:intergenic 45.0%
GCATCTCTATCCTCATCACT+AGG + chr4_1:28366749-28366768 None:intergenic 45.0%
CTCTGATTGAGTGGGATTTG+GGG + chr4_1:28367009-28367028 None:intergenic 45.0%
GCTCTGATTGAGTGGGATTT+GGG + chr4_1:28367010-28367029 None:intergenic 45.0%
! AGCTCTGATTGAGTGGGATT+TGG + chr4_1:28367011-28367030 None:intergenic 45.0%
CACAAAATCATGTGGCAGAC+AGG + chr4_1:28367047-28367066 None:intergenic 45.0%
CTAGAGAAGGAGAAGTTGAG+GGG - chr4_1:28367542-28367561 Msa0543010:CDS 45.0%
GATCTCTCTTCTCCATGTTC+AGG - chr4_1:28367898-28367917 Msa0543010:intron 45.0%
CCTCTAATGAAGCCTGAACA+TGG + chr4_1:28367913-28367932 None:intergenic 45.0%
CCATGTTCAGGCTTCATTAG+AGG - chr4_1:28367910-28367929 Msa0543010:intron 45.0%
CCAGCCACACAAACTATTAG+TGG + chr4_1:28368179-28368198 None:intergenic 45.0%
! CCACTAATAGTTTGTGTGGC+TGG - chr4_1:28368176-28368195 Msa0543010:intron 45.0%
AGAAAGGGCTGAACCACAAA+AGG - chr4_1:28368884-28368903 Msa0543010:intron 45.0%
!!! ATGGCCTCATTAGCCTTTTG+TGG + chr4_1:28368900-28368919 None:intergenic 45.0%
!! ATATATAATAAAATAAGTAT+TGG + chr4_1:28367739-28367758 None:intergenic 5.0%
!! GGAAGGGTATCCTAGTGATG+AGG - chr4_1:28366736-28366755 Msa0543010:intron 50.0%
AGGAAGATCCAGCCCAATAC+AGG - chr4_1:28366798-28366817 Msa0543010:intron 50.0%
CGTTCTAACCTGTATTGGGC+TGG + chr4_1:28366809-28366828 None:intergenic 50.0%
TCTGTGCATCTACTCTGCAC+AGG + chr4_1:28367468-28367487 None:intergenic 50.0%
! AAGTTAGAAGAGTGGGCTCG+TGG - chr4_1:28367487-28367506 Msa0543010:intron 50.0%
GATATTGCAGAAAGAGCGGG+TGG - chr4_1:28367574-28367593 Msa0543010:CDS 50.0%
CAGAAAGAGCGGGTGGAAAT+GGG - chr4_1:28367581-28367600 Msa0543010:CDS 50.0%
AGAAAGAGCGGGTGGAAATG+GGG - chr4_1:28367582-28367601 Msa0543010:CDS 50.0%
!! ACTTGCTTGGTTTTTGCGGC+TGG - chr4_1:28368822-28368841 Msa0543010:intron 50.0%
GCAGAAAGAGCGGGTGGAAA+TGG - chr4_1:28367580-28367599 Msa0543010:CDS 55.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 28366294 28368929 28366294 ID=Msa0543010;Name=Msa0543010
chr4_1 mRNA 28366294 28368929 28366294 ID=Msa0543010-mRNA-1;Parent=Msa0543010;Name=Msa0543010-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|0.8|1|1|5|0|209
chr4_1 exon 28368924 28368929 28368924 ID=Msa0543010-mRNA-1:exon:7674;Parent=Msa0543010-mRNA-1
chr4_1 exon 28368404 28368630 28368404 ID=Msa0543010-mRNA-1:exon:7673;Parent=Msa0543010-mRNA-1
chr4_1 exon 28367533 28367749 28367533 ID=Msa0543010-mRNA-1:exon:7672;Parent=Msa0543010-mRNA-1
chr4_1 exon 28366868 28366983 28366868 ID=Msa0543010-mRNA-1:exon:7671;Parent=Msa0543010-mRNA-1
chr4_1 exon 28366294 28366357 28366294 ID=Msa0543010-mRNA-1:exon:7670;Parent=Msa0543010-mRNA-1
chr4_1 CDS 28368924 28368929 28368924 ID=Msa0543010-mRNA-1:cds;Parent=Msa0543010-mRNA-1
chr4_1 CDS 28368404 28368630 28368404 ID=Msa0543010-mRNA-1:cds;Parent=Msa0543010-mRNA-1
chr4_1 CDS 28367533 28367749 28367533 ID=Msa0543010-mRNA-1:cds;Parent=Msa0543010-mRNA-1
chr4_1 CDS 28366868 28366983 28366868 ID=Msa0543010-mRNA-1:cds;Parent=Msa0543010-mRNA-1
chr4_1 CDS 28366294 28366357 28366294 ID=Msa0543010-mRNA-1:cds;Parent=Msa0543010-mRNA-1
Gene Sequence

>Msa0543010

ATGACAGCATATAAGCGACCAATACCTAGTATCTACAACTCTGTGCTACAGGAGCTCATTGTCCAGCAACATTTGATGAGATACAAGAAGTCATACCGTTATGATCCTGTATTTGCTCTTGGCTTTGTCACTGTATATGACCAACTCATGGAAGGGTATCCTAGTGATGAGGATAGAGATGCCATCTTCCAAGCATACATTAACGCATTGAAGGAAGATCCAGCCCAATACAGAGTAGATGCACAGAAGTTAGAAGAGTGGGCTCGTGGTCAAAATGCAACTTCCCTGATTGAGTTTTCATCTAGAGAAGGAGAAGTTGAGGGGACTTTAAAGGATATTGCAGAAAGAGCGGGTGGAAATGGGGATTTCAGTTATAGTCGTTTCTTTGCAGTAGGCCTTTTTCGTCTTCTTGAGTTAGCAAATGCAATGGAACCAACAATTTTGGAAAAGCTTTGTTCGGCTTTGAATATCAACAAGAAAAGTGTTGATCGAGATTTGGACGTGTATCGCAATCTGCTTTCTAAGTTGGTACAAGCTAAAGAGCTGCTAAAGGAATACATTGACAGGGAGAAGAAGAAAATAGAAGAAAGGGCTGAACCACAAAAGGCTAATGAGGCCATTTCAAAATGA

Protein sequence

>Msa0543010

MTAYKRPIPSIYNSVLQELIVQQHLMRYKKSYRYDPVFALGFVTVYDQLMEGYPSDEDRDAIFQAYINALKEDPAQYRVDAQKLEEWARGQNATSLIEFSSREGEVEGTLKDIAERAGGNGDFSYSRFFAVGLFRLLELANAMEPTILEKLCSALNINKKSVDRDLDVYRNLLSKLVQAKELLKEYIDREKKKIEERAEPQKANEAISK*