AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0598980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0598980 MtrunA17_Chr4g0022631 98.680 303 3 1 1 302 1 303 0.0 607
Msa0598980 MtrunA17_Chr2g0323531 76.042 288 67 2 1 288 1 286 5.14e-159 444
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0598980 AT2G20890.1 69.024 297 73 5 2 292 3 286 7.36e-143 404

Find 95 sgRNAs with CRISPR-Local

Find 418 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATGGAACCAACAATTT+TGG 0.156594 4_2:+36802918 Msa0598980:CDS
CTTTCTTCCACTCGCTTCTT+TGG 0.228211 4_2:+36798005 Msa0598980:CDS
TTCCAATTCCGTTTCCAAAT+TGG 0.229620 4_2:+36798091 Msa0598980:CDS
AGAAGTTGAGGGGACTTTAA+AGG 0.233722 4_2:+36802807 Msa0598980:CDS
GAAAATCCAATTCATTATTC+AGG 0.258200 4_2:-36804416 None:intergenic
ATGGGGCACTTTCATGATAT+TGG 0.271282 4_2:+36804291 Msa0598980:three_prime_UTR
TGAGGCCATTTCAAAATGTT+TGG 0.285166 4_2:+36804180 Msa0598980:CDS
GGAACACCGAACAACCAATT+TGG 0.320518 4_2:-36798105 None:intergenic
CGGTGTTCCTCTTCTGTGTC+AGG 0.335981 4_2:+36798119 Msa0598980:CDS
AACCAATTTGGAAACGGAAT+TGG 0.346208 4_2:-36798093 None:intergenic
CTAACTCAAGAAGACGAAAA+AGG 0.351619 4_2:-36802891 None:intergenic
TGCCGGAAAATTTCTGATTC+CGG 0.352129 4_2:+36797893 Msa0598980:five_prime_UTR
ACACTCATTCTAACCTGTAT+TGG 0.353763 4_2:-36801397 None:intergenic
CTCTAGATGAAAACTCAATC+AGG 0.355791 4_2:-36802780 None:intergenic
GCAGAAAGAGCGGGTGGAAA+TGG 0.361398 4_2:+36802835 Msa0598980:CDS
CGCGTACCTGAATAATGAAT+TGG 0.367137 4_2:+36804410 Msa0598980:three_prime_UTR
CCGTTTCCAAATTGGTTGTT+CGG 0.370999 4_2:+36798099 Msa0598980:CDS
GAGGCCATTTCAAAATGTTT+GGG 0.371107 4_2:+36804181 Msa0598980:CDS
TGTATCTCATCAAATGTTGC+TGG 0.375097 4_2:-36801235 None:intergenic
TATGATCCTGTATTTGCTCT+TGG 0.383099 4_2:+36801272 Msa0598980:CDS
AATTTCAACATGACACGAAA+TGG 0.383517 4_2:+36797753 Msa0598980:five_prime_UTR
AACGGGCTGTATGGCGTAAC+CGG 0.393083 4_2:-36804444 None:intergenic
CACTCATTCTAACCTGTATT+GGG 0.405031 4_2:-36801396 None:intergenic
CAGAAAGAGCGGGTGGAAAT+GGG 0.407573 4_2:+36802836 Msa0598980:CDS
TCGCAATCTGCTTTCTAAGT+TGG 0.429863 4_2:+36803555 Msa0598980:CDS
AGCATATCTTTGCGCTATGT+TGG 0.431929 4_2:+36798059 Msa0598980:CDS
ACAGCCCGTTGTCGAGGATC+AGG 0.442590 4_2:+36804457 Msa0598980:three_prime_UTR
GAAGAAGAAAATAGAAGAAA+GGG 0.446296 4_2:+36804138 Msa0598980:CDS
AGAAGAAGAAAATAGAAGAA+AGG 0.447419 4_2:+36804137 Msa0598980:CDS
TGGGAAATTGATATCAGAAT+GGG 0.455032 4_2:+36804273 Msa0598980:three_prime_UTR
TATCTATAACTCCGTGCTAC+AGG 0.455869 4_2:+36801202 Msa0598980:CDS
GGAATTTAGACGGTGGTGGC+CGG 0.462622 4_2:-36797912 None:intergenic
AGCATACATTAACGCATTGA+AGG 0.462951 4_2:+36801364 Msa0598980:CDS
AGGAAGATCCAGCCCAATAC+AGG 0.469089 4_2:+36801384 Msa0598980:CDS
CAAAGAAGCGAGTGGAAGAA+AGG 0.475729 4_2:-36798004 None:intergenic
AGAACCTGATCCTCGACAAC+GGG 0.478059 4_2:-36804461 None:intergenic
GTTCCGATTCAGATGCAGTT+CGG 0.478573 4_2:+36798027 Msa0598980:CDS
TTAGGAAAGTGAGGTTTATG+TGG 0.481073 4_2:-36797807 None:intergenic
ATCCTCGACAACGGGCTGTA+TGG 0.481135 4_2:-36804453 None:intergenic
CCGAAAATCTCATTCTATGC+CGG 0.481412 4_2:+36797876 Msa0598980:five_prime_UTR
TGAGGTTTATGTGGATTACA+TGG 0.483888 4_2:-36797798 None:intergenic
AGAAAGGGCTGAACCACAAA+AGG 0.489128 4_2:+36804153 Msa0598980:CDS
AAACCGAACTGCATCTGAAT+CGG 0.490474 4_2:-36798030 None:intergenic
CATTCTAACCTGTATTGGGC+TGG 0.493657 4_2:-36801392 None:intergenic
TGCTAAAGGAATACATTGAC+AGG 0.497269 4_2:+36803593 Msa0598980:CDS
CTGGGAAATTGATATCAGAA+TGG 0.500768 4_2:+36804272 Msa0598980:three_prime_UTR
TGCACAGAAGTTAGAAGAGT+GGG 0.505507 4_2:+36802735 Msa0598980:CDS
AACTTTGTCTCAGAAACAGT+TGG 0.506286 4_2:-36801143 None:intergenic
ATCTAGAGAAGGAGAAGTTG+AGG 0.517674 4_2:+36802795 Msa0598980:CDS
CCGAACAACCAATTTGGAAA+CGG 0.518129 4_2:-36798099 None:intergenic
TGACTGTGAGTGTTGTCATT+AGG 0.518569 4_2:-36797825 None:intergenic
TCAATGCGTTAATGTATGCT+TGG 0.520925 4_2:-36801361 None:intergenic
AATTTCCCAGAACGAACAAA+AGG 0.547560 4_2:-36804259 None:intergenic
ACAAAGCCAAGAGCAAATAC+AGG 0.548987 4_2:-36801278 None:intergenic
TCTAGAGAAGGAGAAGTTGA+GGG 0.549571 4_2:+36802796 Msa0598980:CDS
CGCCATACAGCCCGTTGTCG+AGG 0.551050 4_2:+36804451 Msa0598980:three_prime_UTR
TGAACCACAAAAGGCTAATG+AGG 0.552905 4_2:+36804162 Msa0598980:CDS
ACAAGCTAAAGAGCTGCTAA+AGG 0.557940 4_2:+36803579 Msa0598980:CDS
AAGGATATTGCAGAAAGAGC+GGG 0.557982 4_2:+36802826 Msa0598980:CDS
TTTCAAACCTGACACAGAAG+AGG 0.562747 4_2:-36798126 None:intergenic
CACTGTATATGACCAACTCA+TGG 0.564562 4_2:+36801301 Msa0598980:CDS
TAGGATACCCTTCCATGAGT+TGG 0.569068 4_2:-36801313 None:intergenic
TATAGTCGTTTCTTTGCAGT+AGG 0.573306 4_2:+36802868 Msa0598980:CDS
GTATATGACCAACTCATGGA+AGG 0.575651 4_2:+36801305 Msa0598980:CDS
GACAATGAGCTCCTGTAGCA+CGG 0.575789 4_2:-36801213 None:intergenic
CATCGGAATTTAGACGGTGG+TGG 0.576248 4_2:-36797916 None:intergenic
GTGTTGTCATTAGGAAAGTG+AGG 0.576257 4_2:-36797816 None:intergenic
TCTTGAGTTAGCAAATGCAA+TGG 0.577069 4_2:+36802903 Msa0598980:CDS
AAAGAAGCGAGTGGAAGAAA+GGG 0.581082 4_2:-36798003 None:intergenic
TCTAGATGAAAACTCAATCA+GGG 0.581656 4_2:-36802779 None:intergenic
GAAGAAGTTACTGCGGCCAT+CGG 0.584598 4_2:-36797933 None:intergenic
TTTGTCTCAGAAACAGTTGG+AGG 0.595131 4_2:-36801140 None:intergenic
TGCGGCCATCGGAATTTAGA+CGG 0.598997 4_2:-36797922 None:intergenic
GCATCTCTATCCTCATCACT+AGG 0.603750 4_2:-36801332 None:intergenic
CACCACCGTCTAAATTCCGA+TGG 0.608671 4_2:+36797917 Msa0598980:exon
TTGTCTCAGAAACAGTTGGA+GGG 0.613813 4_2:-36801139 None:intergenic
AAAGGATATTGCAGAAAGAG+CGG 0.616391 4_2:+36802825 Msa0598980:CDS
AGAAAGAGCGGGTGGAAATG+GGG 0.617727 4_2:+36802837 Msa0598980:CDS
ATGCACAGAAGTTAGAAGAG+TGG 0.618365 4_2:+36802734 Msa0598980:CDS
AGCACGGAGTTATAGATACT+AGG 0.618724 4_2:-36801197 None:intergenic
GTTAATGTATGCTTGGAAGA+TGG 0.618779 4_2:-36801354 None:intergenic
GAGCAAATACAGGATCATAA+CGG 0.626380 4_2:-36801268 None:intergenic
AACGAACAAAAGGTGAGTCG+AGG 0.638126 4_2:-36804249 None:intergenic
ATCGGAACCAAAGAAGCGAG+TGG 0.641210 4_2:-36798012 None:intergenic
TATATGACCAACTCATGGAA+GGG 0.644279 4_2:+36801306 Msa0598980:CDS
GAGTTATAGATACTAGGTAT+CGG 0.644904 4_2:-36801191 None:intergenic
TAGAACCTGATCCTCGACAA+CGG 0.645864 4_2:-36804462 None:intergenic
CTAGAGAAGGAGAAGTTGAG+GGG 0.650582 4_2:+36802797 Msa0598980:CDS
CACTCACTCAATCTTCTCAG+AGG 0.654132 4_2:+36797970 Msa0598980:CDS
GATATTGCAGAAAGAGCGGG+TGG 0.670621 4_2:+36802829 Msa0598980:CDS
GGAAGGGTATCCTAGTGATG+AGG 0.675183 4_2:+36801322 Msa0598980:CDS
GAAGCGAGTGGAAGAAAGGG+TGG 0.676271 4_2:-36798000 None:intergenic
GGGAAATTGATATCAGAATG+GGG 0.677387 4_2:+36804274 Msa0598980:three_prime_UTR
TGAGAAAGAAGAAGTTACTG+CGG 0.719408 4_2:-36797940 None:intergenic
GGCCATCGGAATTTAGACGG+TGG 0.723114 4_2:-36797919 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAGAATTTGATTTTTTAAT+TGG + chr4_2:36798244-36798263 Msa0598980:intron 10.0%
!! CAGTAAAAATTATAAAATAA+AGG - chr4_2:36798914-36798933 None:intergenic 10.0%
!! AAAGAATAATTACTAAATTT+AGG - chr4_2:36799069-36799088 None:intergenic 10.0%
!! AAAGAATAATTACTAAATTT+AGG - chr4_2:36799069-36799088 None:intergenic 10.0%
!!! AGTTAATATTTAATTTTTGA+AGG - chr4_2:36800721-36800740 None:intergenic 10.0%
!!! TAAATAATTTTTTCCTTAAA+TGG - chr4_2:36802149-36802168 None:intergenic 10.0%
!! GAAATAAAAAAAACTTATTA+AGG + chr4_2:36802474-36802493 Msa0598980:intron 10.0%
!! ATATATAATAAAACAAGTAT+AGG - chr4_2:36802997-36803016 None:intergenic 10.0%
!! ATATAAATAAAGGAAATTAT+GGG - chr4_2:36803192-36803211 None:intergenic 10.0%
!! AATATAAATAAAGGAAATTA+TGG - chr4_2:36803193-36803212 None:intergenic 10.0%
!!! TCAATTTTCAATATAAATAA+AGG - chr4_2:36803202-36803221 None:intergenic 10.0%
!!! TAAATTATTGAATTTTTGTT+TGG + chr4_2:36804656-36804675 Msa0598980:intron 10.0%
!!! ATTTTTTAATTGGAAGTATA+TGG + chr4_2:36798254-36798273 Msa0598980:intron 15.0%
!!! ACTTTTTTAAACAAAAAGTT+GGG - chr4_2:36799741-36799760 None:intergenic 15.0%
!!! AACTTTTTTAAACAAAAAGT+TGG - chr4_2:36799742-36799761 None:intergenic 15.0%
!!! AATTTTTTAATAATGTATCG+AGG - chr4_2:36800151-36800170 None:intergenic 15.0%
!!! TCTTTTTCTTTTTCTTTAAA+AGG + chr4_2:36800602-36800621 Msa0598980:intron 15.0%
!! CATATTATTATCTTGATAAA+AGG - chr4_2:36800990-36801009 None:intergenic 15.0%
!! AACTCAATAATTGAATATAA+TGG + chr4_2:36801471-36801490 Msa0598980:intron 15.0%
!!! GTATAAGTTTTATTTTTCAA+GGG - chr4_2:36802006-36802025 None:intergenic 15.0%
!!! AGTATAAGTTTTATTTTTCA+AGG - chr4_2:36802007-36802026 None:intergenic 15.0%
!! AGTGCATATTTAATTATTAA+GGG - chr4_2:36802066-36802085 None:intergenic 15.0%
!! TAGTGCATATTTAATTATTA+AGG - chr4_2:36802067-36802086 None:intergenic 15.0%
!!! TAATTTTAAAACACCATTTA+AGG + chr4_2:36802133-36802152 Msa0598980:intron 15.0%
!!! GAATTTTGATTATATTAAAG+TGG + chr4_2:36802390-36802409 Msa0598980:intron 15.0%
!! ATTTATTCAAAATCAAATCT+AGG - chr4_2:36802653-36802672 None:intergenic 15.0%
!! ACATTCAAATATTATATCAT+AGG - chr4_2:36803673-36803692 None:intergenic 15.0%
!! CAAAAATTCAATAATTTAGA+AGG - chr4_2:36804654-36804673 None:intergenic 15.0%
!!! TTCATTTTTTTGAGAATTTG+AGG + chr4_2:36798196-36798215 Msa0598980:intron 20.0%
!!! TTTTTGAAGTTTTGTTTATG+AGG + chr4_2:36798297-36798316 Msa0598980:intron 20.0%
!!! TTGAACTATAAATTTTTGTG+CGG + chr4_2:36798557-36798576 Msa0598980:intron 20.0%
!! TTATGTATTATGTGTATGTT+TGG - chr4_2:36798715-36798734 None:intergenic 20.0%
!! AATTTGGATTCAAAAATCAT+TGG - chr4_2:36798773-36798792 None:intergenic 20.0%
!! AAATTATAAAATAAAGGGCA+TGG - chr4_2:36798908-36798927 None:intergenic 20.0%
!! CACATAAACTATTATTTATG+GGG - chr4_2:36799242-36799261 None:intergenic 20.0%
!! CCACATAAACTATTATTTAT+GGG - chr4_2:36799243-36799262 None:intergenic 20.0%
!!! TTTACTTGATATTTTTGGAT+AGG + chr4_2:36799370-36799389 Msa0598980:intron 20.0%
!! TTAATTAATTAAAGTGACAG+AGG - chr4_2:36799694-36799713 None:intergenic 20.0%
!!! TATATTCTATCTAATTTGTG+CGG - chr4_2:36800288-36800307 None:intergenic 20.0%
!! TATTATCTTGATAAAAGGAA+AGG - chr4_2:36800985-36801004 None:intergenic 20.0%
!!! TTTTTATTTCTTTTCCCTTT+TGG - chr4_2:36801059-36801078 None:intergenic 20.0%
!! TTCTCATTTAACAATAATCA+TGG - chr4_2:36801801-36801820 None:intergenic 20.0%
!!! GTGTATATTTTAACTTAAGA+GGG - chr4_2:36801977-36801996 None:intergenic 20.0%
!!! AGTGTATATTTTAACTTAAG+AGG - chr4_2:36801978-36801997 None:intergenic 20.0%
!! ATATTTAATTATTAAGGGAG+GGG - chr4_2:36802061-36802080 None:intergenic 20.0%
!! CATATTTAATTATTAAGGGA+GGG - chr4_2:36802062-36802081 None:intergenic 20.0%
!! TAAAAAAAACTTATTAAGGG+AGG + chr4_2:36802478-36802497 Msa0598980:intron 20.0%
!!! ATTGTAGATTTTAACATAAG+AGG + chr4_2:36802503-36802522 Msa0598980:intron 20.0%
!!! TTGTAGATTTTAACATAAGA+GGG + chr4_2:36802504-36802523 Msa0598980:intron 20.0%
!!! ATGTAATTCTAGCTTTTTTT+AGG + chr4_2:36802534-36802553 Msa0598980:intron 20.0%
!!! TGTAATTCTAGCTTTTTTTA+GGG + chr4_2:36802535-36802554 Msa0598980:intron 20.0%
!!! AGTGTATATTTTAACATAAG+AGG + chr4_2:36802606-36802625 Msa0598980:intron 20.0%
!!! GTGTATATTTTAACATAAGA+GGG + chr4_2:36802607-36802626 Msa0598980:intron 20.0%
!!! TGTATATTTTAACATAAGAG+GGG + chr4_2:36802608-36802627 Msa0598980:intron 20.0%
!! CATGACAATTTAAATGAATT+GGG - chr4_2:36802953-36802972 None:intergenic 20.0%
!! TCATGACAATTTAAATGAAT+TGG - chr4_2:36802954-36802973 None:intergenic 20.0%
!!! GTGATCTTAATTTTATGAAA+AGG - chr4_2:36803803-36803822 None:intergenic 20.0%
!!! CTTTTAATTGAAAATTAAGC+TGG + chr4_2:36803863-36803882 Msa0598980:intron 20.0%
!! AACTGAAAAACTTAGTAAAT+AGG - chr4_2:36803892-36803911 None:intergenic 20.0%
!!! ACTATTGTATTTTCTGAAAA+AGG - chr4_2:36803948-36803967 None:intergenic 20.0%
!! ATGATCACCAAATAAAAATT+TGG + chr4_2:36804223-36804242 Msa0598980:exon 20.0%
!! AATTGGATATAAATAGAGTA+AGG + chr4_2:36804549-36804568 Msa0598980:intron 20.0%
!! ATTGGATATAAATAGAGTAA+GGG + chr4_2:36804550-36804569 Msa0598980:intron 20.0%
!!! TTTTTTGAGAATTTGAGGAT+TGG + chr4_2:36798201-36798220 Msa0598980:intron 25.0%
! CAAAACACTTTGATTATGTT+TGG + chr4_2:36798419-36798438 Msa0598980:intron 25.0%
!! TCGAATTGATTCTGTAAAAT+TGG + chr4_2:36798469-36798488 Msa0598980:intron 25.0%
! CTGTAAAAGTGATTTATGTT+TGG + chr4_2:36798513-36798532 Msa0598980:intron 25.0%
!! AAAATTGATTCTGACATGTT+TGG - chr4_2:36798673-36798692 None:intergenic 25.0%
!! ATTAGTGTTGTCTTATGTTT+TGG - chr4_2:36798985-36799004 None:intergenic 25.0%
! AACATAAGACAACACTAATA+TGG + chr4_2:36798986-36799005 Msa0598980:intron 25.0%
! CCCATAAATAATAGTTTATG+TGG + chr4_2:36799240-36799259 Msa0598980:intron 25.0%
! GCCACATAAACTATTATTTA+TGG - chr4_2:36799244-36799263 None:intergenic 25.0%
! ATAGTTTATGTGGCTAAATA+AGG + chr4_2:36799250-36799269 Msa0598980:intron 25.0%
!! CTGCATTTACTTGATATTTT+TGG + chr4_2:36799365-36799384 Msa0598980:intron 25.0%
!! TTATTTTCCATGCTCTATAT+AGG - chr4_2:36799495-36799514 None:intergenic 25.0%
!! TTGTTCTTGAACTATCTTTT+AGG + chr4_2:36799588-36799607 Msa0598980:intron 25.0%
! ATTTACAGGAAAATTTCTCA+GGG - chr4_2:36799918-36799937 None:intergenic 25.0%
! TATTTACAGGAAAATTTCTC+AGG - chr4_2:36799919-36799938 None:intergenic 25.0%
! GATTTCAGATTGATATTTAC+AGG - chr4_2:36799932-36799951 None:intergenic 25.0%
! TCTTCTAACCTAAAAACATA+GGG - chr4_2:36800528-36800547 None:intergenic 25.0%
! AAGAAATATAACTACAAGTC+TGG - chr4_2:36800575-36800594 None:intergenic 25.0%
!! AATATGTAAGACAGAAGTAT+AGG + chr4_2:36800626-36800645 Msa0598980:intron 25.0%
! GAAGTATGAATTTGCAATTT+AGG - chr4_2:36801037-36801056 None:intergenic 25.0%
!!! ATGACTAAGTATTGATAACA+AGG - chr4_2:36801093-36801112 None:intergenic 25.0%
! TTGTTATCAATACTTAGTCA+TGG + chr4_2:36801092-36801111 Msa0598980:intron 25.0%
!! GACAAAGTTAAATTTTCTCA+AGG + chr4_2:36801157-36801176 Msa0598980:CDS 25.0%
!!! CAATTATTGAGTTGAACATT+TGG - chr4_2:36801464-36801483 None:intergenic 25.0%
! CAAATCCAGAATTAGATTAT+TGG - chr4_2:36801545-36801564 None:intergenic 25.0%
! CAATAATCTAATTCTGGATT+TGG + chr4_2:36801543-36801562 Msa0598980:intron 25.0%
!! TGTTGTAATTGGAAGTATAA+CGG + chr4_2:36801750-36801769 Msa0598980:intron 25.0%
! TCATTTAACAATAATCATGG+AGG - chr4_2:36801798-36801817 None:intergenic 25.0%
! TATATATGTCGACAAAATAG+TGG + chr4_2:36801839-36801858 Msa0598980:intron 25.0%
!! TGTATTCAAGATTCTTTTAG+GGG - chr4_2:36801946-36801965 None:intergenic 25.0%
!! GTGTATTCAAGATTCTTTTA+GGG - chr4_2:36801947-36801966 None:intergenic 25.0%
!! AGTGTATTCAAGATTCTTTT+AGG - chr4_2:36801948-36801967 None:intergenic 25.0%
!!! AAGTTTTATTTTTCAAGGGA+GGG - chr4_2:36802002-36802021 None:intergenic 25.0%
!!! TAAGTTTTATTTTTCAAGGG+AGG - chr4_2:36802003-36802022 None:intergenic 25.0%
! TATTTAATTATTAAGGGAGG+GGG - chr4_2:36802060-36802079 None:intergenic 25.0%
! GCATATTTAATTATTAAGGG+AGG - chr4_2:36802063-36802082 None:intergenic 25.0%
!!! TGTAGATTTTAACATAAGAG+GGG + chr4_2:36802505-36802524 Msa0598980:intron 25.0%
!!! GTAATTCTAGCTTTTTTTAG+GGG + chr4_2:36802536-36802555 Msa0598980:intron 25.0%
!! TCTAATATGTTTTGCATAAG+AGG + chr4_2:36802576-36802595 Msa0598980:intron 25.0%
!! CTAATATGTTTTGCATAAGA+GGG + chr4_2:36802577-36802596 Msa0598980:intron 25.0%
! TTCATCGGTAATAAACATTT+AGG + chr4_2:36803286-36803305 Msa0598980:intron 25.0%
! CCATACACAAAAATTATTAG+TGG - chr4_2:36803438-36803457 None:intergenic 25.0%
!! CCACTAATAATTTTTGTGTA+TGG + chr4_2:36803435-36803454 Msa0598980:intron 25.0%
!! TAATAATTTTTGTGTATGGC+TGG + chr4_2:36803439-36803458 Msa0598980:intron 25.0%
!! AATAATTTTTGTGTATGGCT+GGG + chr4_2:36803440-36803459 Msa0598980:intron 25.0%
!!! TTTACTAAGTTTTTCAGTTC+AGG + chr4_2:36803893-36803912 Msa0598980:intron 25.0%
!!! TTACTAAGTTTTTCAGTTCA+GGG + chr4_2:36803894-36803913 Msa0598980:intron 25.0%
! TCATAACATGTCGAAAATTT+AGG - chr4_2:36804054-36804073 None:intergenic 25.0%
!!! TGTTATGATTATAACTTGCT+TGG + chr4_2:36804066-36804085 Msa0598980:intron 25.0%
! AGAAGAAGAAAATAGAAGAA+AGG + chr4_2:36804137-36804156 Msa0598980:CDS 25.0%
! GAAGAAGAAAATAGAAGAAA+GGG + chr4_2:36804138-36804157 Msa0598980:CDS 25.0%
!! GAGGAAACCAAATTTTTATT+TGG - chr4_2:36804233-36804252 None:intergenic 25.0%
! GAAAATCCAATTCATTATTC+AGG - chr4_2:36804419-36804438 None:intergenic 25.0%
! GAAGTTTGCATCATTTAAAT+TGG + chr4_2:36804532-36804551 Msa0598980:intron 25.0%
AATTTCAACATGACACGAAA+TGG + chr4_2:36797753-36797772 Msa0598980:five_prime_UTR 30.0%
! TGGTTGTGAAATTTTCATCT+CGG + chr4_2:36798274-36798293 Msa0598980:intron 30.0%
TAAGAACTGACACATTAATG+CGG + chr4_2:36798353-36798372 Msa0598980:intron 30.0%
TCTCAATTGAATTATGTCGT+TGG + chr4_2:36798381-36798400 Msa0598980:intron 30.0%
!! ACATAATCAAAGTGTTTTGC+AGG - chr4_2:36798418-36798437 None:intergenic 30.0%
AAGCATATAAGGAAGCAATT+TGG - chr4_2:36798789-36798808 None:intergenic 30.0%
GTGTTATCAATCTCAGATAA+CGG + chr4_2:36798829-36798848 Msa0598980:intron 30.0%
! ATAAAATAAAGGGCATGGTT+AGG - chr4_2:36798903-36798922 None:intergenic 30.0%
! ATATGGACTGCACATAAATA+AGG + chr4_2:36799003-36799022 Msa0598980:intron 30.0%
AAACTGTGTATTCAATGCAT+TGG - chr4_2:36799158-36799177 None:intergenic 30.0%
!! TGTTCTATTTTCAAGAGTCT+TGG - chr4_2:36799295-36799314 None:intergenic 30.0%
CTTAAAATGTGGCAAACAAA+AGG - chr4_2:36799450-36799469 None:intergenic 30.0%
! TATTGGAGCATCTTAAAATG+TGG - chr4_2:36799461-36799480 None:intergenic 30.0%
! TATAGGCCAGTGTATTTTAT+TGG - chr4_2:36799478-36799497 None:intergenic 30.0%
AGCAGAAAAGCTTATAAAAG+TGG + chr4_2:36799523-36799542 Msa0598980:intron 30.0%
AAACAAAAAGTTGGGCAAAA+GGG - chr4_2:36799733-36799752 None:intergenic 30.0%
TAAACAAAAAGTTGGGCAAA+AGG - chr4_2:36799734-36799753 None:intergenic 30.0%
ATCAGTGAAACTGTAGAATA+AGG - chr4_2:36799799-36799818 None:intergenic 30.0%
! TATCAATCCACAGAATTTTG+GGG - chr4_2:36799879-36799898 None:intergenic 30.0%
! GTATCAATCCACAGAATTTT+GGG - chr4_2:36799880-36799899 None:intergenic 30.0%
TTAAAATTCCCGATACGATA+CGG + chr4_2:36800125-36800144 Msa0598980:intron 30.0%
AGTACTTATGATGTTCTCTT+TGG - chr4_2:36800332-36800351 None:intergenic 30.0%
TAGAATTCAATCAGTGGTAA+TGG + chr4_2:36800462-36800481 Msa0598980:intron 30.0%
! ACAAGAAACCCTATGTTTTT+AGG + chr4_2:36800517-36800536 Msa0598980:intron 30.0%
CTCTTCTAACCTAAAAACAT+AGG - chr4_2:36800529-36800548 None:intergenic 30.0%
! ATACGATACTTCACCATTTT+TGG + chr4_2:36800888-36800907 Msa0598980:intron 30.0%
!! GTTGTGAATAGTTCTGAATT+CGG + chr4_2:36801009-36801028 Msa0598980:intron 30.0%
TGCAAATTCATACTTCCAAA+AGG + chr4_2:36801041-36801060 Msa0598980:intron 30.0%
GCAAATTCATACTTCCAAAA+GGG + chr4_2:36801042-36801061 Msa0598980:intron 30.0%
GAGTTATAGATACTAGGTAT+CGG - chr4_2:36801194-36801213 None:intergenic 30.0%
!!! CTGTGGTTTTTGTTTTTAAG+TGG + chr4_2:36801430-36801449 Msa0598980:intron 30.0%
AGATGATTTAACACAGTCTA+TGG - chr4_2:36801520-36801539 None:intergenic 30.0%
TCTCACCAATAATCTAATTC+TGG + chr4_2:36801537-36801556 Msa0598980:intron 30.0%
TAATCTAATTCTGGATTTGG+AGG + chr4_2:36801546-36801565 Msa0598980:intron 30.0%
TAGCTTTCCAAACATGATTT+CGG + chr4_2:36801573-36801592 Msa0598980:intron 30.0%
TCACAAATCACAAAATCATG+TGG - chr4_2:36801647-36801666 None:intergenic 30.0%
! GTTCCTGATAATGTTGTAAT+TGG + chr4_2:36801739-36801758 Msa0598980:intron 30.0%
CTTCCAATTACAACATTATC+AGG - chr4_2:36801745-36801764 None:intergenic 30.0%
!!! ATTTTAACTTAAGAGGGAAG+CGG - chr4_2:36801971-36801990 None:intergenic 30.0%
!!! AGTTTTATTTTTCAAGGGAG+GGG - chr4_2:36802001-36802020 None:intergenic 30.0%
CCGAAGATAAATAGTATTGT+GGG - chr4_2:36802417-36802436 None:intergenic 30.0%
CCCACAATACTATTTATCTT+CGG + chr4_2:36802414-36802433 Msa0598980:intron 30.0%
TCCGAAGATAAATAGTATTG+TGG - chr4_2:36802418-36802437 None:intergenic 30.0%
!!! ATATTTTAACATAAGAGGGG+AGG + chr4_2:36802611-36802630 Msa0598980:intron 30.0%
!!! TATTTTAACATAAGAGGGGA+GGG + chr4_2:36802612-36802631 Msa0598980:intron 30.0%
TCTAGATGAAAACTCAATCA+GGG - chr4_2:36802782-36802801 None:intergenic 30.0%
! ATTGAGTTTTCATCTAGAGA+AGG + chr4_2:36802784-36802803 Msa0598980:CDS 30.0%
! GTAACCTTTTCCAAAATTGT+TGG - chr4_2:36802931-36802950 None:intergenic 30.0%
AACAAGTATAGGACTAAGTT+GGG - chr4_2:36802986-36803005 None:intergenic 30.0%
AAACAAGTATAGGACTAAGT+TGG - chr4_2:36802987-36803006 None:intergenic 30.0%
!!! ACTGATTAGTTTTCTAGAAC+TGG - chr4_2:36803068-36803087 None:intergenic 30.0%
CTTCAGCTAATGAAATAAGT+TGG - chr4_2:36803104-36803123 None:intergenic 30.0%
GAATTACTCAGTAACTTTGA+AGG + chr4_2:36803252-36803271 Msa0598980:intron 30.0%
!! AAAAAGTGTTGATCGAGATT+TGG + chr4_2:36803525-36803544 Msa0598980:CDS 30.0%
AACAACTTAATAGCATTGCA+AGG - chr4_2:36803629-36803648 None:intergenic 30.0%
! TAAGTTGTTCTCACTTCTTT+TGG + chr4_2:36803640-36803659 Msa0598980:intron 30.0%
! AAGTTGTTCTCACTTCTTTT+GGG + chr4_2:36803641-36803660 Msa0598980:intron 30.0%
TGAAGACTAAATGTAGCATA+TGG - chr4_2:36803719-36803738 None:intergenic 30.0%
! CATGTCGAAAATTTAGGTTA+AGG - chr4_2:36804048-36804067 None:intergenic 30.0%
!!! TATAACTTGCTTGGTTTTTG+CGG + chr4_2:36804075-36804094 Msa0598980:intron 30.0%
!! TTGTCCCAAACATTTTGAAA+TGG - chr4_2:36804188-36804207 None:intergenic 30.0%
TGGGAAATTGATATCAGAAT+GGG + chr4_2:36804273-36804292 Msa0598980:three_prime_UTR 30.0%
TTTGTTTGGTCTGTAACATA+TGG + chr4_2:36804670-36804689 Msa0598980:intron 30.0%
! TGAGGTTTATGTGGATTACA+TGG - chr4_2:36797801-36797820 None:intergenic 35.0%
TTAGGAAAGTGAGGTTTATG+TGG - chr4_2:36797810-36797829 None:intergenic 35.0%
! AGAATGAGATTTTCGGAAGA+GGG - chr4_2:36797872-36797891 None:intergenic 35.0%
! TAGAATGAGATTTTCGGAAG+AGG - chr4_2:36797873-36797892 None:intergenic 35.0%
TGAGAAAGAAGAAGTTACTG+CGG - chr4_2:36797943-36797962 None:intergenic 35.0%
TTCCAATTCCGTTTCCAAAT+TGG + chr4_2:36798091-36798110 Msa0598980:CDS 35.0%
AACCAATTTGGAAACGGAAT+TGG - chr4_2:36798096-36798115 None:intergenic 35.0%
!! ACAGTCAACTCACTTTTAGT+CGG - chr4_2:36798497-36798516 None:intergenic 35.0%
! TGATTCTACTTGTTGAAGCT+AGG - chr4_2:36798615-36798634 None:intergenic 35.0%
ACAAGTAGAATCAATTCACG+AGG + chr4_2:36798622-36798641 Msa0598980:intron 35.0%
! TTATCAATCTCAGATAACGG+AGG + chr4_2:36798832-36798851 Msa0598980:intron 35.0%
!! TATCAATCTCAGATAACGGA+GGG + chr4_2:36798833-36798852 Msa0598980:intron 35.0%
AAGAACACTTAGCGAGATAA+CGG + chr4_2:36798870-36798889 Msa0598980:intron 35.0%
GATGCTCCAATAAAATACAC+TGG + chr4_2:36799469-36799488 Msa0598980:intron 35.0%
! GGTATCAATCCACAGAATTT+TGG - chr4_2:36799881-36799900 None:intergenic 35.0%
AAATATAATCAGCAGACAGC+AGG + chr4_2:36799987-36800006 Msa0598980:intron 35.0%
ATACCGATACGATACCAATA+CGG + chr4_2:36800086-36800105 Msa0598980:intron 35.0%
CTTATGATGTTCTCTTTGGA+TGG - chr4_2:36800328-36800347 None:intergenic 35.0%
ACAGAGTAGAATTCAATCAG+TGG + chr4_2:36800456-36800475 Msa0598980:intron 35.0%
AGAGAATAGCTATTGCTATG+TGG + chr4_2:36800492-36800511 Msa0598980:intron 35.0%
! TAAGACAGAAGTATAGGTGT+CGG + chr4_2:36800632-36800651 Msa0598980:intron 35.0%
AAAAAATGAGCGATACGTGT+CGG - chr4_2:36800697-36800716 None:intergenic 35.0%
!!! TTCACCATTTTTGGAGTATC+AGG + chr4_2:36800897-36800916 Msa0598980:intron 35.0%
!!! TCACCATTTTTGGAGTATCA+GGG + chr4_2:36800898-36800917 Msa0598980:intron 35.0%
AACTTTGTCTCAGAAACAGT+TGG - chr4_2:36801146-36801165 None:intergenic 35.0%
TGTATCTCATCAAATGTTGC+TGG - chr4_2:36801238-36801257 None:intergenic 35.0%
GAGCAAATACAGGATCATAA+CGG - chr4_2:36801271-36801290 None:intergenic 35.0%
TATGATCCTGTATTTGCTCT+TGG + chr4_2:36801272-36801291 Msa0598980:CDS 35.0%
TATATGACCAACTCATGGAA+GGG + chr4_2:36801306-36801325 Msa0598980:CDS 35.0%
GTTAATGTATGCTTGGAAGA+TGG - chr4_2:36801357-36801376 None:intergenic 35.0%
TCAATGCGTTAATGTATGCT+TGG - chr4_2:36801364-36801383 None:intergenic 35.0%
AGCATACATTAACGCATTGA+AGG + chr4_2:36801364-36801383 Msa0598980:CDS 35.0%
CACTCATTCTAACCTGTATT+GGG - chr4_2:36801399-36801418 None:intergenic 35.0%
ACACTCATTCTAACCTGTAT+TGG - chr4_2:36801400-36801419 None:intergenic 35.0%
!! TTGAGTTGAACATTTGGTGT+AGG - chr4_2:36801458-36801477 None:intergenic 35.0%
!! ATTTGTAGCTCTGATTGAGT+GGG - chr4_2:36801609-36801628 None:intergenic 35.0%
!! AATTTGTAGCTCTGATTGAG+TGG - chr4_2:36801610-36801629 None:intergenic 35.0%
! TGTGATTTGTGAATCACTCT+TGG + chr4_2:36801655-36801674 Msa0598980:intron 35.0%
!! ATTCAAGATTCTTTTAGGGG+AGG - chr4_2:36801943-36801962 None:intergenic 35.0%
TCGTAATTCAAGCATCACAT+GGG - chr4_2:36802037-36802056 None:intergenic 35.0%
!! AGATTTTAACATAAGAGGGG+TGG + chr4_2:36802508-36802527 Msa0598980:intron 35.0%
!! GATTTTAACATAAGAGGGGT+GGG + chr4_2:36802509-36802528 Msa0598980:intron 35.0%
!!! ATTCTAGCTTTTTTTAGGGG+TGG + chr4_2:36802539-36802558 Msa0598980:intron 35.0%
!!! TTCTAGCTTTTTTTAGGGGT+GGG + chr4_2:36802540-36802559 Msa0598980:intron 35.0%
!! ATTTTAACATAAGAGGGGAG+GGG + chr4_2:36802613-36802632 Msa0598980:intron 35.0%
CTCTAGATGAAAACTCAATC+AGG - chr4_2:36802783-36802802 None:intergenic 35.0%
AAAGGATATTGCAGAAAGAG+CGG + chr4_2:36802825-36802844 Msa0598980:CDS 35.0%
TATAGTCGTTTCTTTGCAGT+AGG + chr4_2:36802868-36802887 Msa0598980:CDS 35.0%
CTAACTCAAGAAGACGAAAA+AGG - chr4_2:36802894-36802913 None:intergenic 35.0%
TCTTGAGTTAGCAAATGCAA+TGG + chr4_2:36802903-36802922 Msa0598980:CDS 35.0%
! TGCAATGGAACCAACAATTT+TGG + chr4_2:36802918-36802937 Msa0598980:CDS 35.0%
!! GGAACCAACAATTTTGGAAA+AGG + chr4_2:36802924-36802943 Msa0598980:CDS 35.0%
ATATGACTATCATCAGTCTG+TGG + chr4_2:36803363-36803382 Msa0598980:intron 35.0%
TGCTAAAGGAATACATTGAC+AGG + chr4_2:36803593-36803612 Msa0598980:CDS 35.0%
GATTCAGTCTTGAACTTCAA+GGG - chr4_2:36803766-36803785 None:intergenic 35.0%
AGATTCAGTCTTGAACTTCA+AGG - chr4_2:36803767-36803786 None:intergenic 35.0%
!! AGTTTTTCAGTTCAGGGTTT+AGG + chr4_2:36803900-36803919 Msa0598980:intron 35.0%
TTGGAATGATCTCTTACTTC+AGG + chr4_2:36804113-36804132 Msa0598980:intron 35.0%
TGGAATGATCTCTTACTTCA+GGG + chr4_2:36804114-36804133 Msa0598980:intron 35.0%
TGAGGCCATTTCAAAATGTT+TGG + chr4_2:36804180-36804199 Msa0598980:CDS 35.0%
GAGGCCATTTCAAAATGTTT+GGG + chr4_2:36804181-36804200 Msa0598980:CDS 35.0%
AATTTCCCAGAACGAACAAA+AGG - chr4_2:36804262-36804281 None:intergenic 35.0%
CTGGGAAATTGATATCAGAA+TGG + chr4_2:36804272-36804291 Msa0598980:three_prime_UTR 35.0%
GGGAAATTGATATCAGAATG+GGG + chr4_2:36804274-36804293 Msa0598980:three_prime_UTR 35.0%
! TGAATTGGATTTTCTACTGC+CGG + chr4_2:36804425-36804444 Msa0598980:three_prime_UTR 35.0%
GTGTTGTCATTAGGAAAGTG+AGG - chr4_2:36797819-36797838 None:intergenic 40.0%
! TGACTGTGAGTGTTGTCATT+AGG - chr4_2:36797828-36797847 None:intergenic 40.0%
! CCGGCATAGAATGAGATTTT+CGG - chr4_2:36797879-36797898 None:intergenic 40.0%
CCGAAAATCTCATTCTATGC+CGG + chr4_2:36797876-36797895 Msa0598980:five_prime_UTR 40.0%
TGCCGGAAAATTTCTGATTC+CGG + chr4_2:36797893-36797912 Msa0598980:five_prime_UTR 40.0%
AAAGAAGCGAGTGGAAGAAA+GGG - chr4_2:36798006-36798025 None:intergenic 40.0%
AAACCGAACTGCATCTGAAT+CGG - chr4_2:36798033-36798052 None:intergenic 40.0%
AGCATATCTTTGCGCTATGT+TGG + chr4_2:36798059-36798078 Msa0598980:CDS 40.0%
CCGAACAACCAATTTGGAAA+CGG - chr4_2:36798102-36798121 None:intergenic 40.0%
CCGTTTCCAAATTGGTTGTT+CGG + chr4_2:36798099-36798118 Msa0598980:CDS 40.0%
TTTCAAACCTGACACAGAAG+AGG - chr4_2:36798129-36798148 None:intergenic 40.0%
AGGATCATGTGTTTGATGCT+TGG + chr4_2:36798317-36798336 Msa0598980:intron 40.0%
! AATTTTTGCCCCTCTACAAG+TGG + chr4_2:36798687-36798706 Msa0598980:intron 40.0%
! TGTTTGGTTCCACTTGTAGA+GGG - chr4_2:36798699-36798718 None:intergenic 40.0%
! ATGTTTGGTTCCACTTGTAG+AGG - chr4_2:36798700-36798719 None:intergenic 40.0%
CCTTATATGCTTGAGCTTTG+CGG + chr4_2:36798797-36798816 Msa0598980:intron 40.0%
ATAGAACACACACACATCTC+AGG + chr4_2:36799307-36799326 Msa0598980:intron 40.0%
! AAGTCCCTCTTGTGCATTTT+AGG - chr4_2:36799398-36799417 None:intergenic 40.0%
TAAAATGCACAAGAGGGACT+TGG + chr4_2:36799397-36799416 Msa0598980:intron 40.0%
!! AGTTTAGCCTTGTAACCTCA+AGG + chr4_2:36799629-36799648 Msa0598980:intron 40.0%
TGTTTGAACTCAGTACCTTG+AGG - chr4_2:36799647-36799666 None:intergenic 40.0%
GTACTGAGTTCAAACAACCT+CGG + chr4_2:36799651-36799670 Msa0598980:intron 40.0%
TACTGAGTTCAAACAACCTC+GGG + chr4_2:36799652-36799671 Msa0598980:intron 40.0%
! TTTTCGACCCCAAAATTCTG+TGG + chr4_2:36799869-36799888 Msa0598980:intron 40.0%
CTTTCATACATGACAGAGTG+TGG + chr4_2:36799961-36799980 Msa0598980:intron 40.0%
GGAGTATAAGTAAGCTGTGT+CGG + chr4_2:36800653-36800672 Msa0598980:intron 40.0%
AAACAATGACCGATACGTGT+CGG - chr4_2:36800780-36800799 None:intergenic 40.0%
! TACGCGTATCGGAAAAGTAT+CGG - chr4_2:36800827-36800846 None:intergenic 40.0%
! TACTTTTCCGATACGCGTAT+TGG + chr4_2:36800828-36800847 Msa0598980:intron 40.0%
! ACTTTTCCGATACGCGTATT+GGG + chr4_2:36800829-36800848 Msa0598980:intron 40.0%
AAGCCCTGATACTCCAAAAA+TGG - chr4_2:36800904-36800923 None:intergenic 40.0%
TTGTCTCAGAAACAGTTGGA+GGG - chr4_2:36801142-36801161 None:intergenic 40.0%
TTTGTCTCAGAAACAGTTGG+AGG - chr4_2:36801143-36801162 None:intergenic 40.0%
AGCACGGAGTTATAGATACT+AGG - chr4_2:36801200-36801219 None:intergenic 40.0%
TATCTATAACTCCGTGCTAC+AGG + chr4_2:36801202-36801221 Msa0598980:CDS 40.0%
ACAAAGCCAAGAGCAAATAC+AGG - chr4_2:36801281-36801300 None:intergenic 40.0%
CACTGTATATGACCAACTCA+TGG + chr4_2:36801301-36801320 Msa0598980:CDS 40.0%
GTATATGACCAACTCATGGA+AGG + chr4_2:36801305-36801324 Msa0598980:CDS 40.0%
TGAGTGTTTGTATGTCTCTG+TGG + chr4_2:36801413-36801432 Msa0598980:intron 40.0%
CAGTCTATGGTGACTTTCTA+TGG - chr4_2:36801507-36801526 None:intergenic 40.0%
GTAATTCAAGCATCACATGG+GGG - chr4_2:36802035-36802054 None:intergenic 40.0%
CGTAATTCAAGCATCACATG+GGG - chr4_2:36802036-36802055 None:intergenic 40.0%
GTCGTAATTCAAGCATCACA+TGG - chr4_2:36802038-36802057 None:intergenic 40.0%
!!! TCTAGCTTTTTTTAGGGGTG+GGG + chr4_2:36802541-36802560 Msa0598980:intron 40.0%
! TATGTTTTGCATAAGAGGGC+AGG + chr4_2:36802581-36802600 Msa0598980:intron 40.0%
! ATGTTTTGCATAAGAGGGCA+GGG + chr4_2:36802582-36802601 Msa0598980:intron 40.0%
ATGCACAGAAGTTAGAAGAG+TGG + chr4_2:36802734-36802753 Msa0598980:CDS 40.0%
TGCACAGAAGTTAGAAGAGT+GGG + chr4_2:36802735-36802754 Msa0598980:CDS 40.0%
ATCTAGAGAAGGAGAAGTTG+AGG + chr4_2:36802795-36802814 Msa0598980:CDS 40.0%
TCTAGAGAAGGAGAAGTTGA+GGG + chr4_2:36802796-36802815 Msa0598980:CDS 40.0%
AGAAGTTGAGGGGACTTTAA+AGG + chr4_2:36802807-36802826 Msa0598980:CDS 40.0%
AAGGATATTGCAGAAAGAGC+GGG + chr4_2:36802826-36802845 Msa0598980:CDS 40.0%
! GATCTCTCTTTTCCATGTTC+AGG + chr4_2:36803147-36803166 Msa0598980:intron 40.0%
CATGTTCAGGCTTCATTAGA+GGG + chr4_2:36803160-36803179 Msa0598980:intron 40.0%
ATGTTCAGGCTTCATTAGAG+GGG + chr4_2:36803161-36803180 Msa0598980:intron 40.0%
AAGGAGAATGCTGCATTCAT+CGG + chr4_2:36803271-36803290 Msa0598980:intron 40.0%
TCGCAATCTGCTTTCTAAGT+TGG + chr4_2:36803555-36803574 Msa0598980:CDS 40.0%
ACAAGCTAAAGAGCTGCTAA+AGG + chr4_2:36803579-36803598 Msa0598980:CDS 40.0%
CTAGTGATATACTGAGCACT+TGG + chr4_2:36803977-36803996 Msa0598980:intron 40.0%
TGAACCACAAAAGGCTAATG+AGG + chr4_2:36804162-36804181 Msa0598980:CDS 40.0%
! ACTCACCTTTTGTTCGTTCT+GGG + chr4_2:36804254-36804273 Msa0598980:three_prime_UTR 40.0%
! ATGGGGCACTTTCATGATAT+TGG + chr4_2:36804291-36804310 Msa0598980:three_prime_UTR 40.0%
CGCGTACCTGAATAATGAAT+TGG + chr4_2:36804410-36804429 Msa0598980:three_prime_UTR 40.0%
TCTGTAACATATGGAAGCCT+TGG + chr4_2:36804679-36804698 Msa0598980:intron 40.0%
! GGCCGGAATCAGAAATTTTC+CGG - chr4_2:36797898-36797917 None:intergenic 45.0%
CACTCACTCAATCTTCTCAG+AGG + chr4_2:36797970-36797989 Msa0598980:CDS 45.0%
CAAAGAAGCGAGTGGAAGAA+AGG - chr4_2:36798007-36798026 None:intergenic 45.0%
CTTTCTTCCACTCGCTTCTT+TGG + chr4_2:36798005-36798024 Msa0598980:CDS 45.0%
GTTCCGATTCAGATGCAGTT+CGG + chr4_2:36798027-36798046 Msa0598980:CDS 45.0%
GGAACACCGAACAACCAATT+TGG - chr4_2:36798108-36798127 None:intergenic 45.0%
! CATGTTTGGTTGCTTTCGAG+TGG - chr4_2:36798659-36798678 None:intergenic 45.0%
! GTTTGGTTCCACTTGTAGAG+GGG - chr4_2:36798698-36798717 None:intergenic 45.0%
CCGCAAAGCTCAAGCATATA+AGG - chr4_2:36798800-36798819 None:intergenic 45.0%
! TCGCTAAGTGTTCTTGCTGT+CGG - chr4_2:36798865-36798884 None:intergenic 45.0%
AAATGTTGACGAGTGTCCCA+GGG - chr4_2:36799219-36799238 None:intergenic 45.0%
AGGTGCCTAAAATGCACAAG+AGG + chr4_2:36799390-36799409 Msa0598980:intron 45.0%
GGTGCCTAAAATGCACAAGA+GGG + chr4_2:36799391-36799410 Msa0598980:intron 45.0%
! ACACTGGCCTATATAGAGCA+TGG + chr4_2:36799485-36799504 Msa0598980:intron 45.0%
CTCAGTACCTTGAGGTTACA+AGG - chr4_2:36799639-36799658 None:intergenic 45.0%
ACTGAGTTCAAACAACCTCG+GGG + chr4_2:36799653-36799672 Msa0598980:intron 45.0%
CTCAGGGACACAACAAAAGT+TGG - chr4_2:36799902-36799921 None:intergenic 45.0%
ATCGGTATCGTGTCAGGTAT+CGG - chr4_2:36800074-36800093 None:intergenic 45.0%
! TATCGTATCGGTATCGTGTC+AGG - chr4_2:36800080-36800099 None:intergenic 45.0%
! TCGCCGTATTGGTATCGTAT+CGG - chr4_2:36800092-36800111 None:intergenic 45.0%
ACGATACCAATACGGCGATA+CGG + chr4_2:36800094-36800113 Msa0598980:intron 45.0%
AAATTCCCGTATCGCCGTAT+TGG - chr4_2:36800103-36800122 None:intergenic 45.0%
! TACGCGTATCGGAGAAGTAT+CGG - chr4_2:36800746-36800765 None:intergenic 45.0%
TACTTCTCCGATACGCGTAT+CGG + chr4_2:36800747-36800766 Msa0598980:intron 45.0%
ATACGTTCCGATACGCGTAT+CGG - chr4_2:36800757-36800776 None:intergenic 45.0%
!! ACGCGTATCGGAAAAGTATC+GGG - chr4_2:36800826-36800845 None:intergenic 45.0%
ATACGTCCCAATACGCGTAT+CGG - chr4_2:36800838-36800857 None:intergenic 45.0%
ATACGCGTATTGGGACGTAT+TGG + chr4_2:36800838-36800857 Msa0598980:intron 45.0%
TACGCGTATTGGGACGTATT+GGG + chr4_2:36800839-36800858 Msa0598980:intron 45.0%
! TATCGGTATCGGATACGTGT+CGG + chr4_2:36800865-36800884 Msa0598980:intron 45.0%
TAGGATACCCTTCCATGAGT+TGG - chr4_2:36801316-36801335 None:intergenic 45.0%
GCATCTCTATCCTCATCACT+AGG - chr4_2:36801335-36801354 None:intergenic 45.0%
CATTCTAACCTGTATTGGGC+TGG - chr4_2:36801395-36801414 None:intergenic 45.0%
TGGGGTTCCGAAATCATGTT+TGG - chr4_2:36801583-36801602 None:intergenic 45.0%
CTCTGATTGAGTGGGATTTG+GGG - chr4_2:36801601-36801620 None:intergenic 45.0%
GCTCTGATTGAGTGGGATTT+GGG - chr4_2:36801602-36801621 None:intergenic 45.0%
! AGCTCTGATTGAGTGGGATT+TGG - chr4_2:36801603-36801622 None:intergenic 45.0%
! TGTTTTGCATAAGAGGGCAG+GGG + chr4_2:36802583-36802602 Msa0598980:intron 45.0%
CTAGAGAAGGAGAAGTTGAG+GGG + chr4_2:36802797-36802816 Msa0598980:CDS 45.0%
CCTCTAATGAAGCCTGAACA+TGG - chr4_2:36803162-36803181 None:intergenic 45.0%
CCATGTTCAGGCTTCATTAG+AGG + chr4_2:36803159-36803178 Msa0598980:intron 45.0%
TTAGGACGCACACAAATTGC+TGG + chr4_2:36803304-36803323 Msa0598980:intron 45.0%
CGCACACAAATTGCTGGTAA+AGG + chr4_2:36803310-36803329 Msa0598980:intron 45.0%
TGATATACTGAGCACTTGGC+AGG + chr4_2:36803981-36804000 Msa0598980:intron 45.0%
!!! GCGGCTGGATTTTGATTCTT+TGG + chr4_2:36804094-36804113 Msa0598980:intron 45.0%
AGAAAGGGCTGAACCACAAA+AGG + chr4_2:36804153-36804172 Msa0598980:CDS 45.0%
!!! ATGGCCTCATTAGCCTTTTG+TGG - chr4_2:36804169-36804188 None:intergenic 45.0%
AACGAACAAAAGGTGAGTCG+AGG - chr4_2:36804252-36804271 None:intergenic 45.0%
! GACTCACCTTTTGTTCGTTC+TGG + chr4_2:36804253-36804272 Msa0598980:three_prime_UTR 45.0%
TAGAACCTGATCCTCGACAA+CGG - chr4_2:36804465-36804484 None:intergenic 45.0%
!! AGTAAAAATTATAAAATAAA+GGG - chr4_2:36798913-36798932 None:intergenic 5.0%
!!! ATATTTTAAAATTTATAGTA+AGG + chr4_2:36802311-36802330 Msa0598980:intron 5.0%
!! AAATAAAAAAAACTTATTAA+GGG + chr4_2:36802475-36802494 Msa0598980:intron 5.0%
CATCGGAATTTAGACGGTGG+TGG - chr4_2:36797919-36797938 None:intergenic 50.0%
CACCACCGTCTAAATTCCGA+TGG + chr4_2:36797917-36797936 Msa0598980:exon 50.0%
TGCGGCCATCGGAATTTAGA+CGG - chr4_2:36797925-36797944 None:intergenic 50.0%
GAAGAAGTTACTGCGGCCAT+CGG - chr4_2:36797936-36797955 None:intergenic 50.0%
ATCGGAACCAAAGAAGCGAG+TGG - chr4_2:36798015-36798034 None:intergenic 50.0%
TCTTGTTAACGAGTGTCCCC+TGG + chr4_2:36799027-36799046 Msa0598980:intron 50.0%
CTTGTTAACGAGTGTCCCCT+GGG + chr4_2:36799028-36799047 Msa0598980:intron 50.0%
TTGTTAACGAGTGTCCCCTG+GGG + chr4_2:36799029-36799048 Msa0598980:intron 50.0%
!! AAGTGCTTAAAGAGTGCCCC+TGG + chr4_2:36799199-36799218 Msa0598980:intron 50.0%
!! AGTGCTTAAAGAGTGCCCCT+GGG + chr4_2:36799200-36799219 Msa0598980:intron 50.0%
AATGTTGACGAGTGTCCCAG+GGG - chr4_2:36799218-36799237 None:intergenic 50.0%
GAAATGTTGACGAGTGTCCC+AGG - chr4_2:36799220-36799239 None:intergenic 50.0%
!! CGACTTGCTATTTGTGCGAG+TGG + chr4_2:36799420-36799439 Msa0598980:intron 50.0%
CTGAGTTCAAACAACCTCGG+GGG + chr4_2:36799654-36799673 Msa0598980:intron 50.0%
TCGGTATCGTGTCAGGTATC+GGG - chr4_2:36800073-36800092 None:intergenic 50.0%
CGATACCAATACGGCGATAC+GGG + chr4_2:36800095-36800114 Msa0598980:intron 50.0%
TATCGAGGCCGTATCGTATC+GGG - chr4_2:36800136-36800155 None:intergenic 50.0%
GTATCGAGGCCGTATCGTAT+CGG - chr4_2:36800137-36800156 None:intergenic 50.0%
!! ACGCGTATCGGAGAAGTATC+GGG - chr4_2:36800745-36800764 None:intergenic 50.0%
GGAACGTATCCGACACGTAT+CGG + chr4_2:36800768-36800787 Msa0598980:intron 50.0%
ACGCGTATTGGGACGTATTG+GGG + chr4_2:36800840-36800859 Msa0598980:intron 50.0%
! GTATTGGGGCGTATCGGTAT+CGG + chr4_2:36800854-36800873 Msa0598980:intron 50.0%
! TTGGAGTATCAGGGCTTCAG+AGG + chr4_2:36800907-36800926 Msa0598980:intron 50.0%
! TGGAGTATCAGGGCTTCAGA+GGG + chr4_2:36800908-36800927 Msa0598980:intron 50.0%
GACAATGAGCTCCTGTAGCA+CGG - chr4_2:36801216-36801235 None:intergenic 50.0%
!! GGAAGGGTATCCTAGTGATG+AGG + chr4_2:36801322-36801341 Msa0598980:CDS 50.0%
AGGAAGATCCAGCCCAATAC+AGG + chr4_2:36801384-36801403 Msa0598980:CDS 50.0%
TCTGTGCATCTACTCTGCAG+AGG - chr4_2:36802723-36802742 None:intergenic 50.0%
GATATTGCAGAAAGAGCGGG+TGG + chr4_2:36802829-36802848 Msa0598980:CDS 50.0%
CAGAAAGAGCGGGTGGAAAT+GGG + chr4_2:36802836-36802855 Msa0598980:CDS 50.0%
AGAAAGAGCGGGTGGAAATG+GGG + chr4_2:36802837-36802856 Msa0598980:CDS 50.0%
GCACTTGGCAGGTTATAGTC+AGG + chr4_2:36803992-36804011 Msa0598980:intron 50.0%
!! ACTTGCTTGGTTTTTGCGGC+TGG + chr4_2:36804079-36804098 Msa0598980:intron 50.0%
AGAACCTGATCCTCGACAAC+GGG - chr4_2:36804464-36804483 None:intergenic 50.0%
CATATGGAAGCCTTGGCAGT+TGG + chr4_2:36804686-36804705 Msa0598980:intron 50.0%
TACATCTGTGCCAACTGCCA+AGG - chr4_2:36804699-36804718 None:intergenic 50.0%
! GGAATTTAGACGGTGGTGGC+CGG - chr4_2:36797915-36797934 None:intergenic 55.0%
GGCCATCGGAATTTAGACGG+TGG - chr4_2:36797922-36797941 None:intergenic 55.0%
GAAGCGAGTGGAAGAAAGGG+TGG - chr4_2:36798003-36798022 None:intergenic 55.0%
CGGTGTTCCTCTTCTGTGTC+AGG + chr4_2:36798119-36798138 Msa0598980:CDS 55.0%
!! ATCCTCAAAGAGTGCCCCAG+GGG - chr4_2:36799046-36799065 None:intergenic 55.0%
!! GATCCTCAAAGAGTGCCCCA+GGG - chr4_2:36799047-36799066 None:intergenic 55.0%
AGTTCAAACAACCTCGGGGG+CGG + chr4_2:36799657-36799676 Msa0598980:intron 55.0%
TCAGCAGACAGCAGGTGATG+CGG + chr4_2:36799995-36800014 Msa0598980:intron 55.0%
! CGGTATCGTGTCAGGTATCG+GGG - chr4_2:36800072-36800091 None:intergenic 55.0%
TGGGACGTATTGGGGCGTAT+CGG + chr4_2:36800848-36800867 Msa0598980:intron 55.0%
! GGAGTATCAGGGCTTCAGAG+GGG + chr4_2:36800909-36800928 Msa0598980:intron 55.0%
GCAGAAAGAGCGGGTGGAAA+TGG + chr4_2:36802835-36802854 Msa0598980:CDS 55.0%
!! AACGGGCTGTATGGCGTAAC+CGG - chr4_2:36804447-36804466 None:intergenic 55.0%
!! ATCCTCGACAACGGGCTGTA+TGG - chr4_2:36804456-36804475 None:intergenic 55.0%
!! GGATCCTCAAAGAGTGCCCC+AGG - chr4_2:36799048-36799067 None:intergenic 60.0%
! CCATTTTACAACCGCCCCCG+AGG - chr4_2:36799671-36799690 None:intergenic 60.0%
CCTCGGGGGCGGTTGTAAAA+TGG + chr4_2:36799668-36799687 Msa0598980:intron 60.0%
ACAGCCCGTTGTCGAGGATC+AGG + chr4_2:36804457-36804476 Msa0598980:three_prime_UTR 60.0%
! GTCCCCTGGGGCACTCTTTG+AGG + chr4_2:36799041-36799060 Msa0598980:intron 65.0%
CGCCATACAGCCCGTTGTCG+AGG + chr4_2:36804451-36804470 Msa0598980:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 36797739 36804743 36797739 ID=Msa0598980;Name=Msa0598980
chr4_2 mRNA 36797739 36804743 36797739 ID=Msa0598980-mRNA-1;Parent=Msa0598980;Name=Msa0598980-mRNA-1;_AED=0.04;_eAED=0.04;_QI=197|1|1|1|0.8|0.66|6|318|302
chr4_2 exon 36797739 36798140 36797739 ID=Msa0598980-mRNA-1:exon:8309;Parent=Msa0598980-mRNA-1
chr4_2 exon 36801138 36801405 36801138 ID=Msa0598980-mRNA-1:exon:8310;Parent=Msa0598980-mRNA-1
chr4_2 exon 36802729 36802945 36802729 ID=Msa0598980-mRNA-1:exon:8311;Parent=Msa0598980-mRNA-1
chr4_2 exon 36803499 36803614 36803499 ID=Msa0598980-mRNA-1:exon:8312;Parent=Msa0598980-mRNA-1
chr4_2 exon 36804135 36804534 36804135 ID=Msa0598980-mRNA-1:exon:8313;Parent=Msa0598980-mRNA-1
chr4_2 exon 36804723 36804743 36804723 ID=Msa0598980-mRNA-1:exon:8314;Parent=Msa0598980-mRNA-1
chr4_2 five_prime_UTR 36797739 36797935 36797739 ID=Msa0598980-mRNA-1:five_prime_utr;Parent=Msa0598980-mRNA-1
chr4_2 CDS 36797936 36798140 36797936 ID=Msa0598980-mRNA-1:cds;Parent=Msa0598980-mRNA-1
chr4_2 CDS 36801138 36801405 36801138 ID=Msa0598980-mRNA-1:cds;Parent=Msa0598980-mRNA-1
chr4_2 CDS 36802729 36802945 36802729 ID=Msa0598980-mRNA-1:cds;Parent=Msa0598980-mRNA-1
chr4_2 CDS 36803499 36803614 36803499 ID=Msa0598980-mRNA-1:cds;Parent=Msa0598980-mRNA-1
chr4_2 CDS 36804135 36804237 36804135 ID=Msa0598980-mRNA-1:cds;Parent=Msa0598980-mRNA-1
chr4_2 three_prime_UTR 36804238 36804534 36804238 ID=Msa0598980-mRNA-1:three_prime_utr;Parent=Msa0598980-mRNA-1
chr4_2 three_prime_UTR 36804723 36804743 36804723 ID=Msa0598980-mRNA-1:three_prime_utr;Parent=Msa0598980-mRNA-1
Gene Sequence

>Msa0598980

ATGGCCGCAGTAACTTCTTCTTTCTCATTCTCAACACTCACTCAATCTTCTCAGAGGAAATTAACCACCCTTTCTTCCACTCGCTTCTTTGGTTCCGATTCAGATGCAGTTCGGTTTCGTTTGAGCATATCTTTGCGCTATGTTGGAGTTCGAACTTCCAATTCCGTTTCCAAATTGGTTGTTCGGTGTTCCTCTTCTGTGTCAGACCCTCCAACTGTTTCTGAGACAAAGTTAAATTTTCTCAAGGCATATAAGCGACCGATACCTAGTATCTATAACTCCGTGCTACAGGAGCTCATTGTCCAGCAACATTTGATGAGATACAAGAAGTCATACCGTTATGATCCTGTATTTGCTCTTGGCTTTGTCACTGTATATGACCAACTCATGGAAGGGTATCCTAGTGATGAGGATAGAGATGCCATCTTCCAAGCATACATTAACGCATTGAAGGAAGATCCAGCCCAATACAGAGTAGATGCACAGAAGTTAGAAGAGTGGGCTCGTGCTCAAAATGCAACTTCCCTGATTGAGTTTTCATCTAGAGAAGGAGAAGTTGAGGGGACTTTAAAGGATATTGCAGAAAGAGCGGGTGGAAATGGGGATTTCAGTTATAGTCGTTTCTTTGCAGTAGGCCTTTTTCGTCTTCTTGAGTTAGCAAATGCAATGGAACCAACAATTTTGGAAAAGCTTTGTTCAGCTTTGAATATCAACAAAAAAAGTGTTGATCGAGATTTGGACGTGTATCGCAATCTGCTTTCTAAGTTGGTACAAGCTAAAGAGCTGCTAAAGGAATACATTGACAGGGAGAAGAAGAAAATAGAAGAAAGGGCTGAACCACAAAAGGCTAATGAGGCCATTTCAAAATGTTTGGGACAAGAGCAGTTTTCTAACATGATCACCAAATAA

Protein sequence

>Msa0598980

MAAVTSSFSFSTLTQSSQRKLTTLSSTRFFGSDSDAVRFRLSISLRYVGVRTSNSVSKLVVRCSSSVSDPPTVSETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKKSYRYDPVFALGFVTVYDQLMEGYPSDEDRDAIFQAYINALKEDPAQYRVDAQKLEEWARAQNATSLIEFSSREGEVEGTLKDIAERAGGNGDFSYSRFFAVGLFRLLELANAMEPTILEKLCSALNINKKSVDRDLDVYRNLLSKLVQAKELLKEYIDREKKKIEERAEPQKANEAISKCLGQEQFSNMITK*