AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0597370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0597370 MtrunA17_Chr4g0020051 97.500 360 8 1 1 360 1 359 0.0 716
Msa0597370 MtrunA17_Chr4g0041341 40.741 216 121 2 144 352 227 442 3.54e-41 150
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0597370 AT3G63490.1 65.722 353 100 7 13 356 1 341 3.80e-158 447
Msa0597370 AT3G63490.2 59.259 297 97 8 13 300 1 282 1.55e-104 309
Msa0597370 AT2G42710.1 41.860 215 119 2 144 352 188 402 1.40e-50 174

Find 110 sgRNAs with CRISPR-Local

Find 391 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTGTTGATCATTATATTT+AGG 0.131759 4_2:+29421313 None:intergenic
TGCTAGCCTTGGGAAGATTC+TGG 0.185149 4_2:-29419452 Msa0597370:CDS
TATTGATTTAGTCAGCTTTA+TGG 0.187625 4_2:-29418868 Msa0597370:three_prime_UTR
TTCATTATATTATCTATCTA+TGG 0.274152 4_2:-29418665 Msa0597370:three_prime_UTR
GGAATCGTTCACTTGCCTTT+TGG 0.287837 4_2:-29419175 Msa0597370:CDS
ACTGTTGATCATTATATTTA+GGG 0.290232 4_2:+29421314 None:intergenic
GGGAGAGAGGAAGAAGGTTC+TGG 0.298442 4_2:+29424007 None:intergenic
ATTGATTTAGTCAGCTTTAT+GGG 0.306238 4_2:-29418867 Msa0597370:three_prime_UTR
CTTGAAGACAGCAATTTCTT+TGG 0.313872 4_2:-29421401 Msa0597370:CDS
AAAACTTGCAGGAGCAGATT+TGG 0.329410 4_2:-29419799 Msa0597370:CDS
AGAAGAAGGAGAAAGGTCTT+GGG 0.330843 4_2:+29424043 None:intergenic
CATTACTTCTCAAGAGTGAT+AGG 0.340890 4_2:-29423800 Msa0597370:CDS
GGTCAATGTTGAGGCGGAAA+TGG 0.347628 4_2:+29421335 None:intergenic
GCTAGCCTTGGGAAGATTCT+GGG 0.350205 4_2:-29419451 Msa0597370:CDS
GCTGTTACAGTGCCAGCTTT+TGG 0.356409 4_2:+29419406 None:intergenic
GGAGAGAGGAAGAAGGTTCT+GGG 0.357732 4_2:+29424008 None:intergenic
CAGAATAGATCACTTGAATA+TGG 0.363358 4_2:-29418894 Msa0597370:exon
TTCGATGAAGCAAAACTTGC+AGG 0.364692 4_2:-29419810 Msa0597370:CDS
GAGAAGAAGGAGAAAGGTCT+TGG 0.368226 4_2:+29424042 None:intergenic
GTAAGTCTGCCGAAGGGAAC+TGG 0.379100 4_2:-29421177 Msa0597370:CDS
TACAAGGAAAATCCTCATCT+TGG 0.380572 4_2:+29418719 None:intergenic
AGATAATATAATGAAATCTA+AGG 0.382055 4_2:+29418673 None:intergenic
AATGCAGCTTTCCCTTTCTT+AGG 0.383121 4_2:+29423819 None:intergenic
GGTGAGATCTAAGAGATTCT+TGG 0.384948 4_2:-29421461 Msa0597370:CDS
CTATGTTGTGTGCACACTTT+TGG 0.391436 4_2:+29418751 None:intergenic
GGATTTGGCATGAGTCCTCT+TGG 0.392084 4_2:+29419427 None:intergenic
AACACCTTAGGCATCATATC+TGG 0.401176 4_2:+29419708 None:intergenic
GGCTATAGCAGAATTCAAAC+AGG 0.402560 4_2:-29419227 Msa0597370:CDS
TTCTACTGTTTCTACAAACT+TGG 0.402665 4_2:+29421360 None:intergenic
GATCTGATAGAAGAGATAAA+AGG 0.407945 4_2:-29419765 Msa0597370:CDS
TTGTTTCAGGTTGCTAGCCT+TGG 0.411414 4_2:-29419463 Msa0597370:intron
TACATATACAGGGATGAGTT+TGG 0.413538 4_2:-29418802 Msa0597370:three_prime_UTR
GTTGTACATGAAGCCATGTT+TGG 0.414703 4_2:+29424122 None:intergenic
GTTACCAAGGTTACATATAC+AGG 0.419332 4_2:-29418813 Msa0597370:three_prime_UTR
TGTTTCAGGTTGCTAGCCTT+GGG 0.425349 4_2:-29419462 Msa0597370:intron
AACAGGGAAAAGTTGAATAC+AGG 0.442667 4_2:-29419210 Msa0597370:CDS
CAGCAATGGGGCCTTCAGTC+AGG 0.443694 4_2:-29418954 Msa0597370:CDS
GCGCACATATGCTCAGCAAT+GGG 0.454736 4_2:-29418967 Msa0597370:CDS
AGAGATAAAAGGAGGATACA+TGG 0.455640 4_2:-29419754 Msa0597370:CDS
GTCAATGTTGAGGCGGAAAT+GGG 0.464039 4_2:+29421336 None:intergenic
ACAAGGAAAATCCTCATCTT+GGG 0.467492 4_2:+29418720 None:intergenic
GAATACAGGGCAGATAAAAC+AGG 0.473583 4_2:-29419196 Msa0597370:CDS
TTCAGTCAGGTTAAATATCA+AGG 0.479582 4_2:-29418941 Msa0597370:CDS
GTTACTACTAAGCCTAAGAA+AGG 0.488925 4_2:-29423831 Msa0597370:CDS
GTTAGATTAACCGACTTAGT+AGG 0.492831 4_2:+29423972 None:intergenic
GTGCACACAACATAGTCCTT+TGG 0.501143 4_2:-29418743 Msa0597370:three_prime_UTR
CGGGTGCGAAAGGTGTGTAC+TGG 0.503896 4_2:-29418996 Msa0597370:CDS
GAGAGTGTGGTGGTGAAAGC+AGG 0.504363 4_2:+29424148 None:intergenic
GGAAAAGAACGGAGAGAAGA+AGG 0.505919 4_2:+29424029 None:intergenic
GAAGAAGGAGAAAGGTCTTG+GGG 0.510778 4_2:+29424044 None:intergenic
TTGTACATGAAGCCATGTTT+GGG 0.512407 4_2:+29424123 None:intergenic
TGGTGAAAGCAGGACATTAG+AGG 0.518128 4_2:+29424158 None:intergenic
TTAATCTAACCTACCAGTCT+AGG 0.519742 4_2:-29423959 Msa0597370:CDS
CATCCCTGTATATGTAACCT+TGG 0.524171 4_2:+29418809 None:intergenic
GTTATCTATTCGTTTGCCGA+TGG 0.524222 4_2:+29424183 None:intergenic
TGCGCACATATGCTCAGCAA+TGG 0.525735 4_2:-29418968 Msa0597370:CDS
TATACAGGGATGAGTTTGGT+TGG 0.530491 4_2:-29418798 Msa0597370:three_prime_UTR
GTAAAATCGAAGACCTAGAC+TGG 0.533354 4_2:+29423946 None:intergenic
AAATCCTCATCTTGGGCCAA+AGG 0.535268 4_2:+29418727 None:intergenic
CTCATGCCAAATCCAAAAGC+TGG 0.536274 4_2:-29419418 Msa0597370:CDS
TATATTTAGGGTCAATGTTG+AGG 0.541178 4_2:+29421326 None:intergenic
AAGAAGGAGAAAGGTCTTGG+GGG 0.541318 4_2:+29424045 None:intergenic
GAGAAAGATGGTGTTGATGA+TGG 0.542009 4_2:-29423876 Msa0597370:CDS
TGTAACAGCTAATATTCCTC+AGG 0.545912 4_2:-29419392 Msa0597370:intron
GCTTCAAAACGAGGGGAGAG+AGG 0.550446 4_2:+29423994 None:intergenic
AACGGAGAGAAGAAGGAGAA+AGG 0.551129 4_2:+29424036 None:intergenic
AACAAACCATCGGGTGCGAA+AGG 0.555511 4_2:-29419006 Msa0597370:CDS
CTGATAGAAGAGATAAAAGG+AGG 0.556066 4_2:-29419762 Msa0597370:CDS
CCACACTCTCTTCCCAAACA+TGG 0.557526 4_2:-29424135 Msa0597370:CDS
GTAGAGGCAAACAAACCATC+GGG 0.559336 4_2:-29419015 Msa0597370:CDS
CTAGCCTTGGGAAGATTCTG+GGG 0.560309 4_2:-29419450 Msa0597370:CDS
AAAATAGCCGTTCTTACTCA+AGG 0.563803 4_2:-29421144 Msa0597370:intron
TACACACCTTTCGCACCCGA+TGG 0.566838 4_2:+29419000 None:intergenic
TTCTCCAGATATGATGCCTA+AGG 0.567948 4_2:-29419712 Msa0597370:intron
AGCAGATTTGGTGGGTGGAG+AGG 0.569877 4_2:-29419787 Msa0597370:CDS
ACTTGCAGGAGCAGATTTGG+TGG 0.571491 4_2:-29419796 Msa0597370:CDS
TAGTCCTTTGGCCCAAGATG+AGG 0.571677 4_2:-29418731 Msa0597370:three_prime_UTR
AACGAGGGGAGAGAGGAAGA+AGG 0.573710 4_2:+29424001 None:intergenic
ATTACTTCTCAAGAGTGATA+GGG 0.582083 4_2:-29423799 Msa0597370:intron
ATAATCACCTTGAGTAAGAA+CGG 0.583105 4_2:+29421137 None:intergenic
TTGATATTTAACCTGACTGA+AGG 0.584092 4_2:+29418943 None:intergenic
TTACTACTAAGCCTAAGAAA+GGG 0.585009 4_2:-29423830 Msa0597370:CDS
AGTAGAGGCAAACAAACCAT+CGG 0.588958 4_2:-29419016 Msa0597370:CDS
GGGGTGAGAATAGAAGAAGA+GGG 0.598380 4_2:+29424065 None:intergenic
TTAATAGGTAAGTCTGCCGA+AGG 0.603199 4_2:-29421184 Msa0597370:intron
ACTTAGTAGGCTTCAAAACG+AGG 0.603839 4_2:+29423985 None:intergenic
ACAGGGAAAAGTTGAATACA+GGG 0.604006 4_2:-29419209 Msa0597370:CDS
GCAGGAGCAGATTTGGTGGG+TGG 0.604457 4_2:-29419792 Msa0597370:CDS
AATCGAAGACCTAGACTGGT+AGG 0.609515 4_2:+29423950 None:intergenic
CTTGCAGGAGCAGATTTGGT+GGG 0.612542 4_2:-29419795 Msa0597370:CDS
GGGTGAGAATAGAAGAAGAG+GGG 0.614380 4_2:+29424066 None:intergenic
AGAAGGAGAAAGGTCTTGGG+GGG 0.616732 4_2:+29424046 None:intergenic
TACAAAGTAATAATAATACA+AGG 0.623495 4_2:+29418703 None:intergenic
GGGAAGATTCTGGGGCCAAG+AGG 0.625950 4_2:-29419442 Msa0597370:CDS
CTTGTCAAAAGATGTTACCA+AGG 0.627029 4_2:-29418826 Msa0597370:three_prime_UTR
AGAAGGTTCTGGGAAAAGAA+CGG 0.632360 4_2:+29424018 None:intergenic
GTCGATGAAGATGAGAAAGA+TGG 0.636348 4_2:-29423888 Msa0597370:CDS
ATTTAGGGTCAATGTTGAGG+CGG 0.636560 4_2:+29421329 None:intergenic
CCATGTTTGGGAAGAGAGTG+TGG 0.639849 4_2:+29424135 None:intergenic
TAATTTGCAGAAATCAGTAG+AGG 0.640381 4_2:-29419031 Msa0597370:intron
CTTAGTAGGCTTCAAAACGA+GGG 0.651809 4_2:+29423986 None:intergenic
TTGGCCCCAGAATCTTCCCA+AGG 0.652840 4_2:+29419446 None:intergenic
AGCAACATCAGCAGTAACAG+CGG 0.669887 4_2:+29423917 None:intergenic
TTAGTAGGCTTCAAAACGAG+GGG 0.672051 4_2:+29423987 None:intergenic
CGCACATATGCTCAGCAATG+GGG 0.673772 4_2:-29418966 Msa0597370:CDS
TTACCAAGGTTACATATACA+GGG 0.678915 4_2:-29418812 Msa0597370:three_prime_UTR
TAATAGGTAAGTCTGCCGAA+GGG 0.688585 4_2:-29421183 Msa0597370:intron
TGAAAGCAGGACATTAGAGG+TGG 0.695588 4_2:+29424161 None:intergenic
GCTATAGCAGAATTCAAACA+GGG 0.697806 4_2:-29419226 Msa0597370:CDS
TGTTTGGGAAGAGAGTGTGG+TGG 0.778971 4_2:+29424138 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAATTTTAATAACTATAATT+TGG - chr4_2:29419075-29419094 Msa0597370:intron 10.0%
!! ATAATTTCATAAAATATACA+TGG - chr4_2:29420933-29420952 Msa0597370:intron 10.0%
!! CAATTATTCATAAAATAAAT+GGG + chr4_2:29421292-29421311 None:intergenic 10.0%
!! ACAATTATTCATAAAATAAA+TGG + chr4_2:29421293-29421312 None:intergenic 10.0%
!! GATTATTAGTGTATTATAAA+GGG - chr4_2:29419112-29419131 Msa0597370:intron 15.0%
!! TTGAACAAAATAAAAATGAT+AGG - chr4_2:29419237-29419256 Msa0597370:intron 15.0%
!! TGAACAAAATAAAAATGATA+GGG - chr4_2:29419238-29419257 Msa0597370:intron 15.0%
!! TAACAAATTATCTAGAAAAT+TGG + chr4_2:29419715-29419734 None:intergenic 15.0%
!!! TTTCTAGATAATTTGTTAAA+AGG - chr4_2:29419717-29419736 Msa0597370:CDS 15.0%
!!! TTCTAGATAATTTGTTAAAA+GGG - chr4_2:29419718-29419737 Msa0597370:CDS 15.0%
!!! AAAAAACATTTTCTTGTAAA+GGG - chr4_2:29421739-29421758 Msa0597370:intron 15.0%
!! TAGAAATATGTAAGAAATAA+GGG + chr4_2:29422167-29422186 None:intergenic 15.0%
!! TTAGAAATATGTAAGAAATA+AGG + chr4_2:29422168-29422187 None:intergenic 15.0%
!! GGAAAAAAAAAAAACTATAT+AGG + chr4_2:29422376-29422395 None:intergenic 15.0%
!! AAATTAATATTCCTATAAGA+AGG + chr4_2:29422416-29422435 None:intergenic 15.0%
!!! TAATTGTTTTGCTTTTAAAA+TGG - chr4_2:29422602-29422621 Msa0597370:intron 15.0%
!!! AATTGTTTTGCTTTTAAAAT+GGG - chr4_2:29422603-29422622 Msa0597370:intron 15.0%
!!! TGTTTTTAGCATTTATTATT+TGG - chr4_2:29423284-29423303 Msa0597370:intron 15.0%
!!! TACATTTTGATAAAAAGAAA+AGG + chr4_2:29423517-29423536 None:intergenic 15.0%
!! TACAAAGTAATAATAATACA+AGG + chr4_2:29424099-29424118 None:intergenic 15.0%
!! AGATAATATAATGAAATCTA+AGG + chr4_2:29424129-29424148 None:intergenic 15.0%
!! TTCATTATATTATCTATCTA+TGG - chr4_2:29424134-29424153 Msa0597370:CDS 15.0%
!! GGATTATTAGTGTATTATAA+AGG - chr4_2:29419111-29419130 Msa0597370:intron 20.0%
!! GAACAAAATAAAAATGATAG+GGG - chr4_2:29419239-29419258 Msa0597370:intron 20.0%
!!! ATTCAATGATATCATTTTTG+GGG + chr4_2:29419537-29419556 None:intergenic 20.0%
!!! CATTCAATGATATCATTTTT+GGG + chr4_2:29419538-29419557 None:intergenic 20.0%
!!! ACATTCAATGATATCATTTT+TGG + chr4_2:29419539-29419558 None:intergenic 20.0%
!! TTATATGGTTTAAAAAGATC+CGG - chr4_2:29419756-29419775 Msa0597370:CDS 20.0%
!! AAATTTCAGAAGATATTTGA+AGG + chr4_2:29421047-29421066 None:intergenic 20.0%
!! AAATTATTGCATATAATGGT+AGG + chr4_2:29421123-29421142 None:intergenic 20.0%
!!! ATCATTGAATTTTTCATGTT+TGG - chr4_2:29421255-29421274 Msa0597370:intron 20.0%
!! ACTGTTGATCATTATATTTA+GGG + chr4_2:29421488-29421507 None:intergenic 20.0%
!! AACTGTTGATCATTATATTT+AGG + chr4_2:29421489-29421508 None:intergenic 20.0%
!!! GAAAAAACATTTTCTTGTAA+AGG - chr4_2:29421738-29421757 Msa0597370:intron 20.0%
!! CAATTATGTAAACTCAATTA+TGG - chr4_2:29421784-29421803 Msa0597370:intron 20.0%
!! TCACTAGTAATTATCATAAA+GGG + chr4_2:29422142-29422161 None:intergenic 20.0%
!! ATCACTAGTAATTATCATAA+AGG + chr4_2:29422143-29422162 None:intergenic 20.0%
!!! ATAGTTTTTTTTTTTTCCAG+AGG - chr4_2:29422378-29422397 Msa0597370:intron 20.0%
!!! GTGCTTTGAAAAAAAAATAA+TGG - chr4_2:29422447-29422466 Msa0597370:intron 20.0%
!!! ATAGTTTGTGTATTATTAAG+CGG + chr4_2:29422917-29422936 None:intergenic 20.0%
!!! AATTTATAGTTCATTTTGAC+AGG - chr4_2:29422959-29422978 Msa0597370:intron 20.0%
!! TCATCTTGTTAAAATACAAT+GGG + chr4_2:29423182-29423201 None:intergenic 20.0%
!! ATCATCTTGTTAAAATACAA+TGG + chr4_2:29423183-29423202 None:intergenic 20.0%
!! TTTAGCATTTATTATTTGGA+TGG - chr4_2:29423288-29423307 Msa0597370:intron 20.0%
!! TAAAAAGAATTATGCAATCA+TGG + chr4_2:29423550-29423569 None:intergenic 20.0%
!! ATTCATTTTCATATCACCAT+CGG - chr4_2:29418600-29418619 Msa0597370:three_prime_UTR 25.0%
!! AATAACTATAATTTGGGTTC+TGG - chr4_2:29419082-29419101 Msa0597370:intron 25.0%
! TACCAACAAACACAATTAAT+TGG + chr4_2:29419158-29419177 None:intergenic 25.0%
! TTACAATTTATCTGCATTCA+TGG + chr4_2:29419312-29419331 None:intergenic 25.0%
!! TCAATTTTTGTTCGTAATTG+TGG + chr4_2:29419649-29419668 None:intergenic 25.0%
!!! TTTGTTGTACTTTTGTGAAT+TGG - chr4_2:29419683-29419702 Msa0597370:intron 25.0%
! TAGAACTGAGTTATCTTATA+TGG - chr4_2:29419741-29419760 Msa0597370:CDS 25.0%
!!! TTTTTAGAACCAGTGAATTT+AGG - chr4_2:29419986-29420005 Msa0597370:intron 25.0%
! CTTAAAATATTTCCATCGAT+TGG + chr4_2:29420137-29420156 None:intergenic 25.0%
!! CAATCGATGGAAATATTTTA+AGG - chr4_2:29420135-29420154 Msa0597370:intron 25.0%
!! GTTTTCACACATATTATCTA+GGG - chr4_2:29420332-29420351 Msa0597370:intron 25.0%
!!! TATTAGTTGATGCTACATTT+TGG - chr4_2:29420494-29420513 Msa0597370:intron 25.0%
! AAGATATAGTGAGAAATTGT+TGG - chr4_2:29420650-29420669 Msa0597370:intron 25.0%
!!! TATTTCAGTTTTTCAACAGA+TGG + chr4_2:29420779-29420798 None:intergenic 25.0%
! AGCGAAATTATTGCATATAA+TGG + chr4_2:29421127-29421146 None:intergenic 25.0%
! TTATATGCAATAATTTCGCT+TGG - chr4_2:29421127-29421146 Msa0597370:intron 25.0%
! TGATCTTAGAAAGAAACAAA+TGG + chr4_2:29421221-29421240 None:intergenic 25.0%
!!! CTAAGATCAAGTTGATTATT+TGG - chr4_2:29421232-29421251 Msa0597370:intron 25.0%
! TCTTGGAAATTCAAAAATTG+AGG - chr4_2:29421355-29421374 Msa0597370:CDS 25.0%
! CTTGGAAATTCAAAAATTGA+GGG - chr4_2:29421356-29421375 Msa0597370:CDS 25.0%
! TATGTAAACTCAATTATGGA+TGG - chr4_2:29421788-29421807 Msa0597370:intron 25.0%
! AATAGTTAATACAGAACCAT+AGG + chr4_2:29422061-29422080 None:intergenic 25.0%
! AGAATGTGTTTATATTTGAC+TGG - chr4_2:29422325-29422344 Msa0597370:intron 25.0%
! GAATGTGTTTATATTTGACT+GGG - chr4_2:29422326-29422345 Msa0597370:intron 25.0%
! AATGTGTTTATATTTGACTG+GGG - chr4_2:29422327-29422346 Msa0597370:intron 25.0%
!!! CTACTTATTTTCCTTCTTAT+AGG - chr4_2:29422402-29422421 Msa0597370:intron 25.0%
! GGTACAATAATCTTATATCT+TGG + chr4_2:29422741-29422760 None:intergenic 25.0%
! CAAACTATTTATTGTCTCTT+TGG - chr4_2:29422929-29422948 Msa0597370:intron 25.0%
! TTCTCTCTATGTAAAAAGTT+TGG - chr4_2:29423148-29423167 Msa0597370:intron 25.0%
!!! GTTAAAATACAATGGGTTAT+GGG + chr4_2:29423175-29423194 None:intergenic 25.0%
!!! TGTTAAAATACAATGGGTTA+TGG + chr4_2:29423176-29423195 None:intergenic 25.0%
! AAATGCTAAAAACAAGATGA+TGG + chr4_2:29423278-29423297 None:intergenic 25.0%
!! GATTGCATAATTCTTTTTAC+AGG - chr4_2:29423551-29423570 Msa0597370:intron 25.0%
! TACAGATAGAAAATTCAGTT+TGG + chr4_2:29423714-29423733 None:intergenic 25.0%
! TTTCTGCAAATTAGAACAAT+GGG + chr4_2:29423761-29423780 None:intergenic 25.0%
! ATTTCTGCAAATTAGAACAA+TGG + chr4_2:29423762-29423781 None:intergenic 25.0%
!!! TATTGATTTAGTCAGCTTTA+TGG - chr4_2:29423931-29423950 Msa0597370:CDS 25.0%
!! ATTGATTTAGTCAGCTTTAT+GGG - chr4_2:29423932-29423951 Msa0597370:CDS 25.0%
!! ACATCTTTTGACAAGATATT+TGG + chr4_2:29423968-29423987 None:intergenic 25.0%
! CTCACTATTAATAGCAAAAA+TGG + chr4_2:29424170-29424189 None:intergenic 25.0%
!!! CATTTTTGCTATTAATAGTG+AGG - chr4_2:29424168-29424187 Msa0597370:exon 25.0%
TTACTACTAAGCCTAAGAAA+GGG - chr4_2:29418969-29418988 Msa0597370:CDS 30.0%
ATTACTTCTCAAGAGTGATA+GGG - chr4_2:29419000-29419019 Msa0597370:CDS 30.0%
TGCCAATTAATTGTGTTTGT+TGG - chr4_2:29419153-29419172 Msa0597370:CDS 30.0%
AATAGATAAGTCACTGAATC+CGG + chr4_2:29419778-29419797 None:intergenic 30.0%
TCCAGTTATAGTAAGACAAA+AGG - chr4_2:29419874-29419893 Msa0597370:intron 30.0%
AGTGAATTTAGGAAGATGAA+GGG - chr4_2:29419997-29420016 Msa0597370:intron 30.0%
ACTTGGAAAAATTGTTCTGA+AGG - chr4_2:29420040-29420059 Msa0597370:intron 30.0%
! ACGTGATTTTCAATTCTCTT+CGG + chr4_2:29420305-29420324 None:intergenic 30.0%
! GGTTTTCACACATATTATCT+AGG - chr4_2:29420331-29420350 Msa0597370:intron 30.0%
TAACGATTAACATCTCATGT+AGG - chr4_2:29420826-29420845 Msa0597370:intron 30.0%
AACGATTAACATCTCATGTA+GGG - chr4_2:29420827-29420846 Msa0597370:intron 30.0%
TGTTCACGTGTTTATGTTAT+AGG - chr4_2:29420893-29420912 Msa0597370:intron 30.0%
! TTATGTTATAGGAGCTTTAG+AGG - chr4_2:29420904-29420923 Msa0597370:intron 30.0%
AGAAAGTCTGGCTATAAATA+TGG + chr4_2:29420986-29421005 None:intergenic 30.0%
!! TTCTACTGTTTCTACAAACT+TGG + chr4_2:29421442-29421461 None:intergenic 30.0%
! TATATTTAGGGTCAATGTTG+AGG + chr4_2:29421476-29421495 None:intergenic 30.0%
TTCATCCATCTTCTCTTAAT+AGG - chr4_2:29421600-29421619 Msa0597370:intron 30.0%
ACTTACCTATTAAGAGAAGA+TGG + chr4_2:29421608-29421627 None:intergenic 30.0%
!!! GTAAGAACGGCTATTTTTAT+GGG + chr4_2:29421652-29421671 None:intergenic 30.0%
!!! AGTAAGAACGGCTATTTTTA+TGG + chr4_2:29421653-29421672 None:intergenic 30.0%
ATAATCACCTTGAGTAAGAA+CGG + chr4_2:29421665-29421684 None:intergenic 30.0%
ACGATTATATATGTATGCAG+TGG + chr4_2:29421898-29421917 None:intergenic 30.0%
CATATAACCATAAGTTTGTG+AGG - chr4_2:29422104-29422123 Msa0597370:intron 30.0%
AGCATCTTAATCTAAGTACA+TGG - chr4_2:29422219-29422238 Msa0597370:intron 30.0%
ATGTGTTTATATTTGACTGG+GGG - chr4_2:29422328-29422347 Msa0597370:intron 30.0%
!! ACATAGTTTTACTTAACCTC+TGG + chr4_2:29422560-29422579 None:intergenic 30.0%
!!! TGTTTTGCTTTTAAAATGGG+TGG - chr4_2:29422606-29422625 Msa0597370:intron 30.0%
!! TCAGTCTGTTTCTATATGTA+GGG + chr4_2:29422762-29422781 None:intergenic 30.0%
CAGAATACAAGCACTAAAAA+TGG + chr4_2:29422834-29422853 None:intergenic 30.0%
! TTTTAGTGCTTGTATTCTGT+TGG - chr4_2:29422835-29422854 Msa0597370:intron 30.0%
ATGTTCCAACTTATAACAAC+TGG - chr4_2:29422874-29422893 Msa0597370:intron 30.0%
TGTTCCAACTTATAACAACT+GGG - chr4_2:29422875-29422894 Msa0597370:intron 30.0%
GATCTGATAGAAGAGATAAA+AGG - chr4_2:29423034-29423053 Msa0597370:intron 30.0%
! AAGATCCTCTTCTGAAAAAT+CGG + chr4_2:29423655-29423674 None:intergenic 30.0%
! TAATTTGCAGAAATCAGTAG+AGG - chr4_2:29423768-29423787 Msa0597370:intron 30.0%
TTGATATTTAACCTGACTGA+AGG + chr4_2:29423859-29423878 None:intergenic 30.0%
TTCAGTCAGGTTAAATATCA+AGG - chr4_2:29423858-29423877 Msa0597370:CDS 30.0%
CAGAATAGATCACTTGAATA+TGG - chr4_2:29423905-29423924 Msa0597370:CDS 30.0%
TTACCAAGGTTACATATACA+GGG - chr4_2:29423987-29424006 Msa0597370:CDS 30.0%
TTGTACATGAAGCCATGTTT+GGG + chr4_2:29418679-29418698 None:intergenic 35.0%
! GTTAGATTAACCGACTTAGT+AGG + chr4_2:29418830-29418849 None:intergenic 35.0%
TTAATCTAACCTACCAGTCT+AGG - chr4_2:29418840-29418859 Msa0597370:three_prime_UTR 35.0%
GTTACTACTAAGCCTAAGAA+AGG - chr4_2:29418968-29418987 Msa0597370:CDS 35.0%
CATTACTTCTCAAGAGTGAT+AGG - chr4_2:29418999-29419018 Msa0597370:CDS 35.0%
!! TAATTTGGGTTCTGGTTTCA+TGG - chr4_2:29419090-29419109 Msa0597370:intron 35.0%
AATATCGTGTCAGATGTTTG+TGG + chr4_2:29419199-29419218 None:intergenic 35.0%
!! GAGTGGACTAAATAGACTAA+CGG + chr4_2:29419356-29419375 None:intergenic 35.0%
! GACTCTTTTGGTCAATTTCA+GGG + chr4_2:29419427-29419446 None:intergenic 35.0%
! AGACTCTTTTGGTCAATTTC+AGG + chr4_2:29419428-29419447 None:intergenic 35.0%
ACCAAAAGAGTCTACATTCA+GGG - chr4_2:29419435-29419454 Msa0597370:CDS 35.0%
TTTGCAATTTCTCTGCATTC+AGG - chr4_2:29419463-29419482 Msa0597370:intron 35.0%
TTGCAATTTCTCTGCATTCA+GGG - chr4_2:29419464-29419483 Msa0597370:intron 35.0%
CTTTAGTCTCTGAATAGGAA+AGG + chr4_2:29419505-29419524 None:intergenic 35.0%
AGTCTCTTTAGTCTCTGAAT+AGG + chr4_2:29419510-29419529 None:intergenic 35.0%
ATCCGAATTCAGTGACTTTA+AGG + chr4_2:29419855-29419874 None:intergenic 35.0%
! GCCTTTTGTCTTACTATAAC+TGG + chr4_2:29419878-29419897 None:intergenic 35.0%
TATGACAGTAGAAGAGTCAA+AGG - chr4_2:29419908-29419927 Msa0597370:intron 35.0%
! ATCTCTTTTCTCATTGCGAT+CGG - chr4_2:29419943-29419962 Msa0597370:intron 35.0%
CTTCATCTTCCTAAATTCAC+TGG + chr4_2:29419998-29420017 None:intergenic 35.0%
CAGTGAATTTAGGAAGATGA+AGG - chr4_2:29419996-29420015 Msa0597370:intron 35.0%
GTGAATTTAGGAAGATGAAG+GGG - chr4_2:29419998-29420017 Msa0597370:intron 35.0%
! AATATTTCCATCGATTGGTC+AGG + chr4_2:29420132-29420151 None:intergenic 35.0%
!!! CGATGGAAATATTTTAAGGC+AGG - chr4_2:29420139-29420158 Msa0597370:intron 35.0%
! GGGGGTATAATCGATAATTT+GGG + chr4_2:29420234-29420253 None:intergenic 35.0%
! TGGGGGTATAATCGATAATT+TGG + chr4_2:29420235-29420254 None:intergenic 35.0%
!! TACCAAGGATTGGTTACATT+GGG + chr4_2:29420254-29420273 None:intergenic 35.0%
TTTCAATTCTCTTCGGTATG+TGG + chr4_2:29420298-29420317 None:intergenic 35.0%
AATTGAAAATCACGTGACTG+TGG - chr4_2:29420310-29420329 Msa0597370:intron 35.0%
ACCAGTAATAGAACAATCTG+TGG + chr4_2:29420389-29420408 None:intergenic 35.0%
AGATTGTTCTATTACTGGTG+TGG - chr4_2:29420390-29420409 Msa0597370:intron 35.0%
GATTGTTCTATTACTGGTGT+GGG - chr4_2:29420391-29420410 Msa0597370:intron 35.0%
TCTAAAGATACCGAATCAGT+TGG + chr4_2:29420419-29420438 None:intergenic 35.0%
!! ACTGATTCGGTATCTTTAGA+TGG - chr4_2:29420419-29420438 Msa0597370:intron 35.0%
ACGATTAACATCTCATGTAG+GGG - chr4_2:29420828-29420847 Msa0597370:intron 35.0%
!!! TTCCTTCATCACCACTTTTT+AGG + chr4_2:29420860-29420879 None:intergenic 35.0%
TTATAGCCAGACTTTCTCTT+TGG - chr4_2:29420989-29421008 Msa0597370:intron 35.0%
ATGCAATAATTTCGCTTGGT+TGG - chr4_2:29421131-29421150 Msa0597370:intron 35.0%
AAGTAGGCAAACAAATATGC+TGG + chr4_2:29421167-29421186 None:intergenic 35.0%
AGCATATTTGTTTGCCTACT+TGG - chr4_2:29421166-29421185 Msa0597370:CDS 35.0%
CTTGAAGACAGCAATTTCTT+TGG - chr4_2:29421398-29421417 Msa0597370:CDS 35.0%
AAAATAGCCGTTCTTACTCA+AGG - chr4_2:29421655-29421674 Msa0597370:intron 35.0%
TGTAAAGGGATGTGTATGAA+AGG - chr4_2:29421753-29421772 Msa0597370:intron 35.0%
AACTCAATTATGGATGGACA+TGG - chr4_2:29421794-29421813 Msa0597370:intron 35.0%
GGACATGGACATAAAATGAT+AGG - chr4_2:29421809-29421828 Msa0597370:intron 35.0%
AAGTAGATGTACTTGGTTCA+CGG + chr4_2:29421971-29421990 None:intergenic 35.0%
! GAACCAAGTACATCTACTTT+TGG - chr4_2:29421972-29421991 Msa0597370:intron 35.0%
CTACCAAAAGTAGATGTACT+TGG + chr4_2:29421978-29421997 None:intergenic 35.0%
!! ATCTACTTTTGGTAGAGTGA+TGG - chr4_2:29421983-29422002 Msa0597370:intron 35.0%
!! TCTACTTTTGGTAGAGTGAT+GGG - chr4_2:29421984-29422003 Msa0597370:intron 35.0%
CTTATGGTTATATGCACACA+TGG + chr4_2:29422098-29422117 None:intergenic 35.0%
!! ACAAACAAGTGTCTGCTTTT+AGG - chr4_2:29422191-29422210 Msa0597370:intron 35.0%
CAGATGGATGATGATTCAAA+AGG + chr4_2:29422252-29422271 None:intergenic 35.0%
ATTGCAAACTCAATGACAGA+TGG + chr4_2:29422268-29422287 None:intergenic 35.0%
AAGGAAAATAAGTAGACCTC+TGG + chr4_2:29422397-29422416 None:intergenic 35.0%
!! AGGGTTGTTTGTTGTTTCAA+TGG + chr4_2:29422496-29422515 None:intergenic 35.0%
TAATTGAGCCATGTAGACAA+GGG + chr4_2:29422515-29422534 None:intergenic 35.0%
TTAATTGAGCCATGTAGACA+AGG + chr4_2:29422516-29422535 None:intergenic 35.0%
CATGGCTCAATTAATTCCAT+TGG - chr4_2:29422522-29422541 Msa0597370:intron 35.0%
CTGGTTTATGATTGAACCAA+TGG + chr4_2:29422541-29422560 None:intergenic 35.0%
TTGGTTCAATCATAAACCAG+AGG - chr4_2:29422541-29422560 Msa0597370:intron 35.0%
! GAGTTCTGGTTAATTGTTGA+AGG - chr4_2:29422668-29422687 Msa0597370:intron 35.0%
!! GTCAGTCTGTTTCTATATGT+AGG + chr4_2:29422763-29422782 None:intergenic 35.0%
TTATTAAGCGGCGATTCAAT+TGG + chr4_2:29422905-29422924 None:intergenic 35.0%
CTGATAGAAGAGATAAAAGG+AGG - chr4_2:29423037-29423056 Msa0597370:intron 35.0%
AGAGATAAAAGGAGGATACA+TGG - chr4_2:29423045-29423064 Msa0597370:intron 35.0%
AAGATAATGAGCAACACCTT+AGG + chr4_2:29423106-29423125 None:intergenic 35.0%
TGTAACAGCTAATATTCCTC+AGG - chr4_2:29423407-29423426 Msa0597370:intron 35.0%
GCTATAGCAGAATTCAAACA+GGG - chr4_2:29423573-29423592 Msa0597370:intron 35.0%
!! GAAAAATCGGCTTTTCCAAA+AGG + chr4_2:29423642-29423661 None:intergenic 35.0%
!! AAAAGCCGATTTTTCAGAAG+AGG - chr4_2:29423647-29423666 Msa0597370:intron 35.0%
CTTGTCAAAAGATGTTACCA+AGG - chr4_2:29423973-29423992 Msa0597370:CDS 35.0%
GTTACCAAGGTTACATATAC+AGG - chr4_2:29423986-29424005 Msa0597370:CDS 35.0%
TACATATACAGGGATGAGTT+TGG - chr4_2:29423997-29424016 Msa0597370:CDS 35.0%
ACAAGGAAAATCCTCATCTT+GGG + chr4_2:29424082-29424101 None:intergenic 35.0%
TACAAGGAAAATCCTCATCT+TGG + chr4_2:29424083-29424102 None:intergenic 35.0%
GTTATCTATTCGTTTGCCGA+TGG + chr4_2:29418619-29418638 None:intergenic 40.0%
GTTGTACATGAAGCCATGTT+TGG + chr4_2:29418680-29418699 None:intergenic 40.0%
AGAAGAAGGAGAAAGGTCTT+GGG + chr4_2:29418759-29418778 None:intergenic 40.0%
!! AGAAGGTTCTGGGAAAAGAA+CGG + chr4_2:29418784-29418803 None:intergenic 40.0%
TTAGTAGGCTTCAAAACGAG+GGG + chr4_2:29418815-29418834 None:intergenic 40.0%
CTTAGTAGGCTTCAAAACGA+GGG + chr4_2:29418816-29418835 None:intergenic 40.0%
ACTTAGTAGGCTTCAAAACG+AGG + chr4_2:29418817-29418836 None:intergenic 40.0%
!!! CGTTTTGAAGCCTACTAAGT+CGG - chr4_2:29418817-29418836 Msa0597370:three_prime_UTR 40.0%
GTAAAATCGAAGACCTAGAC+TGG + chr4_2:29418856-29418875 None:intergenic 40.0%
GTCGATGAAGATGAGAAAGA+TGG - chr4_2:29418911-29418930 Msa0597370:CDS 40.0%
!! GAGAAAGATGGTGTTGATGA+TGG - chr4_2:29418923-29418942 Msa0597370:CDS 40.0%
AATGCAGCTTTCCCTTTCTT+AGG + chr4_2:29418983-29419002 None:intergenic 40.0%
GTTTGTGGCTATGCTTCTTA+TGG + chr4_2:29419184-29419203 None:intergenic 40.0%
! AGTCACTTTAGTCCCTGAAT+AGG - chr4_2:29419266-29419285 Msa0597370:intron 40.0%
CTTTAGTCCCTGAATAGGAA+AGG - chr4_2:29419271-29419290 Msa0597370:intron 40.0%
ACTAACGGAGTCTACATTCA+GGG + chr4_2:29419341-29419360 None:intergenic 40.0%
TCAGGGGCTAAATTGACTAA+CGG + chr4_2:29419378-29419397 None:intergenic 40.0%
ACTAACGGAGTCTACATTCA+GGG + chr4_2:29419341-29419360 None:intergenic 40.0%
TCAGGGACTAAAGTGACTAA+CGG + chr4_2:29419264-29419283 None:intergenic 40.0%
GACCAAAAGAGTCTACATTC+AGG - chr4_2:29419434-29419453 Msa0597370:CDS 40.0%
! TCCCTGAATGTAGACTCTTT+TGG + chr4_2:29419439-29419458 None:intergenic 40.0%
! ACGTCGTCAATCAAAAGTGT+GGG - chr4_2:29419607-29419626 Msa0597370:intron 40.0%
CTGAAGTCACCTTGAATTAC+CGG - chr4_2:29419829-29419848 Msa0597370:intron 40.0%
!! ACTTTAAGGCCGGTAATTCA+AGG + chr4_2:29419841-29419860 None:intergenic 40.0%
!! GAATTCAGTGACTTTAAGGC+CGG + chr4_2:29419851-29419870 None:intergenic 40.0%
GGCCTTAAAGTCACTGAATT+CGG - chr4_2:29419850-29419869 Msa0597370:intron 40.0%
!! ACCAAGGATTGGTTACATTG+GGG + chr4_2:29420253-29420272 None:intergenic 40.0%
!! CTACCAAGGATTGGTTACAT+TGG + chr4_2:29420255-29420274 None:intergenic 40.0%
CAATGTAACCAATCCTTGGT+AGG - chr4_2:29420253-29420272 Msa0597370:intron 40.0%
ATTCTCTTCGGTATGTGGTA+CGG + chr4_2:29420293-29420312 None:intergenic 40.0%
GTAATAGAACAATCTGTGGC+CGG + chr4_2:29420385-29420404 None:intergenic 40.0%
GCCACAGATTGTTCTATTAC+TGG - chr4_2:29420385-29420404 Msa0597370:intron 40.0%
! GATTCGGTATCTTTAGATGG+AGG - chr4_2:29420422-29420441 Msa0597370:intron 40.0%
GCTACAAGGTTAGGTATAAG+TGG + chr4_2:29420455-29420474 None:intergenic 40.0%
TAACCTTGTAGCTGTGTTGT+GGG - chr4_2:29420463-29420482 Msa0597370:intron 40.0%
! ACCTGAGAATTTTCACGTAC+AGG - chr4_2:29420565-29420584 Msa0597370:intron 40.0%
TCCTGTACGTGAAAATTCTC+AGG + chr4_2:29420569-29420588 None:intergenic 40.0%
CAGTAGCTAACGACTACAAA+TGG - chr4_2:29420683-29420702 Msa0597370:intron 40.0%
! TTTTGTGCTCACTGCTCATT+TGG - chr4_2:29420738-29420757 Msa0597370:intron 40.0%
! CTCCTAAAAAGTGGTGATGA+AGG - chr4_2:29420855-29420874 Msa0597370:intron 40.0%
TTTCCACCAAAGAGAAAGTC+TGG + chr4_2:29420998-29421017 None:intergenic 40.0%
! TCTGAAATTTAGCACGAGTC+CGG - chr4_2:29421057-29421076 Msa0597370:intron 40.0%
GTTTATATGCATCTCTCACC+CGG + chr4_2:29421079-29421098 None:intergenic 40.0%
TTTGCCTACTTGGATAGTGA+TGG - chr4_2:29421176-29421195 Msa0597370:CDS 40.0%
TACACCATCACTATCCAAGT+AGG + chr4_2:29421183-29421202 None:intergenic 40.0%
TTCACTTTCCATGTTTCACC+AGG - chr4_2:29421317-29421336 Msa0597370:CDS 40.0%
AGAATCTCTTAGATCTCACC+TGG + chr4_2:29421338-29421357 None:intergenic 40.0%
GGTGAGATCTAAGAGATTCT+TGG - chr4_2:29421338-29421357 Msa0597370:CDS 40.0%
! ATTTAGGGTCAATGTTGAGG+CGG + chr4_2:29421473-29421492 None:intergenic 40.0%
GAGAAGATGGATGAAAGACT+CGG + chr4_2:29421595-29421614 None:intergenic 40.0%
TTAATAGGTAAGTCTGCCGA+AGG - chr4_2:29421615-29421634 Msa0597370:intron 40.0%
TAATAGGTAAGTCTGCCGAA+GGG - chr4_2:29421616-29421635 Msa0597370:intron 40.0%
CTTCATGCGTGGATAACTAT+GGG - chr4_2:29422023-29422042 Msa0597370:intron 40.0%
!! TGGGTTCATTGATTTGCCTA+TGG - chr4_2:29422042-29422061 Msa0597370:intron 40.0%
CCTTTAGCCTCACAAACTTA+TGG + chr4_2:29422114-29422133 None:intergenic 40.0%
CCATAAGTTTGTGAGGCTAA+AGG - chr4_2:29422111-29422130 Msa0597370:intron 40.0%
ACAAACAACCCTTGTCTACA+TGG - chr4_2:29422504-29422523 Msa0597370:intron 40.0%
!!! CTTTTAAAATGGGTGGCGTA+TGG - chr4_2:29422613-29422632 Msa0597370:intron 40.0%
GTAGACACTACCTATCTAGT+GGG + chr4_2:29422713-29422732 None:intergenic 40.0%
AGTAGACACTACCTATCTAG+TGG + chr4_2:29422714-29422733 None:intergenic 40.0%
TGTTCTCTGTTGCATGTTTC+TGG - chr4_2:29422806-29422825 Msa0597370:intron 40.0%
TTCGATGAAGCAAAACTTGC+AGG - chr4_2:29422989-29423008 Msa0597370:intron 40.0%
AAAACTTGCAGGAGCAGATT+TGG - chr4_2:29423000-29423019 Msa0597370:intron 40.0%
TTCTCCAGATATGATGCCTA+AGG - chr4_2:29423087-29423106 Msa0597370:intron 40.0%
AACACCTTAGGCATCATATC+TGG + chr4_2:29423094-29423113 None:intergenic 40.0%
! TTGCCATCGTTGATTGTTTC+AGG - chr4_2:29423323-29423342 Msa0597370:intron 40.0%
CAACCTGAAACAATCAACGA+TGG + chr4_2:29423329-29423348 None:intergenic 40.0%
GGCTATAGCAGAATTCAAAC+AGG - chr4_2:29423572-29423591 Msa0597370:intron 40.0%
GAATACAGGGCAGATAAAAC+AGG - chr4_2:29423603-29423622 Msa0597370:intron 40.0%
AGTAGAGGCAAACAAACCAT+CGG - chr4_2:29423783-29423802 Msa0597370:intron 40.0%
CATCCCTGTATATGTAACCT+TGG + chr4_2:29423993-29424012 None:intergenic 40.0%
TATACAGGGATGAGTTTGGT+TGG - chr4_2:29424001-29424020 Msa0597370:CDS 40.0%
! CTATGTTGTGTGCACACTTT+TGG + chr4_2:29424051-29424070 None:intergenic 40.0%
TGAAAGCAGGACATTAGAGG+TGG + chr4_2:29418641-29418660 None:intergenic 45.0%
TGGTGAAAGCAGGACATTAG+AGG + chr4_2:29418644-29418663 None:intergenic 45.0%
GGGTGAGAATAGAAGAAGAG+GGG + chr4_2:29418736-29418755 None:intergenic 45.0%
GGGGTGAGAATAGAAGAAGA+GGG + chr4_2:29418737-29418756 None:intergenic 45.0%
AAGAAGGAGAAAGGTCTTGG+GGG + chr4_2:29418757-29418776 None:intergenic 45.0%
GAAGAAGGAGAAAGGTCTTG+GGG + chr4_2:29418758-29418777 None:intergenic 45.0%
GAGAAGAAGGAGAAAGGTCT+TGG + chr4_2:29418760-29418779 None:intergenic 45.0%
AACGGAGAGAAGAAGGAGAA+AGG + chr4_2:29418766-29418785 None:intergenic 45.0%
GGAAAAGAACGGAGAGAAGA+AGG + chr4_2:29418773-29418792 None:intergenic 45.0%
AATCGAAGACCTAGACTGGT+AGG + chr4_2:29418852-29418871 None:intergenic 45.0%
AGCAACATCAGCAGTAACAG+CGG + chr4_2:29418885-29418904 None:intergenic 45.0%
GACGACTCCTTTCCTATTCA+GGG + chr4_2:29419281-29419300 None:intergenic 45.0%
TGACGACTCCTTTCCTATTC+AGG + chr4_2:29419282-29419301 None:intergenic 45.0%
GACTAACGGAGTCTACATTC+AGG + chr4_2:29419342-29419361 None:intergenic 45.0%
GGCTAAATTGACTAACGGAG+TGG + chr4_2:29419373-29419392 None:intergenic 45.0%
CTAACGGAGTCTACATTCAG+GGG + chr4_2:29419340-29419359 None:intergenic 45.0%
GACTAACGGAGTCTACATTC+AGG + chr4_2:29419342-29419361 None:intergenic 45.0%
GTAAGTACACTGTCAGACAG+TGG - chr4_2:29419565-29419584 Msa0597370:intron 45.0%
CACGTCGTCAATCAAAAGTG+TGG - chr4_2:29419606-29419625 Msa0597370:intron 45.0%
TTTCTCATTGCGATCGGAAG+TGG - chr4_2:29419949-29419968 Msa0597370:intron 45.0%
!! CCAAGGATTGGTTACATTGG+GGG + chr4_2:29420252-29420271 None:intergenic 45.0%
TTCTCTTCGGTATGTGGTAC+GGG + chr4_2:29420292-29420311 None:intergenic 45.0%
CACAACACAGCTACAAGGTT+AGG + chr4_2:29420464-29420483 None:intergenic 45.0%
CTAACCTTGTAGCTGTGTTG+TGG - chr4_2:29420462-29420481 Msa0597370:intron 45.0%
ATACCCACAACACAGCTACA+AGG + chr4_2:29420469-29420488 None:intergenic 45.0%
GTAGTCGTTAGCTACTGAAG+AGG + chr4_2:29420680-29420699 None:intergenic 45.0%
AGGGGAGAACTCCTAAAAAG+TGG - chr4_2:29420846-29420865 Msa0597370:intron 45.0%
TAGCCAGACTTTCTCTTTGG+TGG - chr4_2:29420992-29421011 Msa0597370:intron 45.0%
CTGAAATTTAGCACGAGTCC+GGG - chr4_2:29421058-29421077 Msa0597370:intron 45.0%
AGATCTCACCTGGTGAAACA+TGG + chr4_2:29421328-29421347 None:intergenic 45.0%
GTCAATGTTGAGGCGGAAAT+GGG + chr4_2:29421466-29421485 None:intergenic 45.0%
ACTAGAATCAAGCGAAGAGC+AGG + chr4_2:29421530-29421549 None:intergenic 45.0%
! ATGGGTTTTCCAGTTCCCTT+CGG + chr4_2:29421634-29421653 None:intergenic 45.0%
! ATAGGTCTTTTCTCCCGAAG+TGG - chr4_2:29421827-29421846 Msa0597370:intron 45.0%
AACGCAATGTCTACCACTTC+GGG + chr4_2:29421843-29421862 None:intergenic 45.0%
CAACGCAATGTCTACCACTT+CGG + chr4_2:29421844-29421863 None:intergenic 45.0%
!! TTGTCCTGGCATTGACATAG+AGG - chr4_2:29421861-29421880 Msa0597370:intron 45.0%
!! TTTGGTAGAGTGATGGGTCA+CGG - chr4_2:29421990-29422009 Msa0597370:intron 45.0%
GAATTGAACTGCTTCATGCG+TGG - chr4_2:29422012-29422031 Msa0597370:intron 45.0%
GCTTCATGCGTGGATAACTA+TGG - chr4_2:29422022-29422041 Msa0597370:intron 45.0%
ACTCTCCAGATACACCACAA+GGG + chr4_2:29422652-29422671 None:intergenic 45.0%
AACTCTCCAGATACACCACA+AGG + chr4_2:29422653-29422672 None:intergenic 45.0%
! ACACTACCTATCTAGTGGGT+GGG + chr4_2:29422709-29422728 None:intergenic 45.0%
CTGGCCCAGTTGTTATAAGT+TGG + chr4_2:29422882-29422901 None:intergenic 45.0%
!! ATACAGGGACCAATGGGTTA+TGG - chr4_2:29423250-29423269 Msa0597370:intron 45.0%
!! TACAGGGACCAATGGGTTAT+GGG - chr4_2:29423251-29423270 Msa0597370:intron 45.0%
ATGATGGTCCCATAACCCAT+TGG + chr4_2:29423262-29423281 None:intergenic 45.0%
!! TTGTTTCAGGTTGCTAGCCT+TGG - chr4_2:29423336-29423355 Msa0597370:intron 45.0%
!! TGTTTCAGGTTGCTAGCCTT+GGG - chr4_2:29423337-29423356 Msa0597370:intron 45.0%
CTCATGCCAAATCCAAAAGC+TGG - chr4_2:29423381-29423400 Msa0597370:intron 45.0%
! ACAGTGCCAGCTTTTGGATT+TGG + chr4_2:29423390-29423409 None:intergenic 45.0%
AGTAGTTGATTGTGCACCTG+AGG + chr4_2:29423426-29423445 None:intergenic 45.0%
! GGAATCGTTCACTTGCCTTT+TGG - chr4_2:29423624-29423643 Msa0597370:intron 45.0%
GTAGAGGCAAACAAACCATC+GGG - chr4_2:29423784-29423803 Msa0597370:intron 45.0%
GTGCACACAACATAGTCCTT+TGG - chr4_2:29424056-29424075 Msa0597370:CDS 45.0%
AAATCCTCATCTTGGGCCAA+AGG + chr4_2:29424075-29424094 None:intergenic 45.0%
!!! AATTTTAATAACTATAATTT+GGG - chr4_2:29419076-29419095 Msa0597370:intron 5.0%
! TGTTTGGGAAGAGAGTGTGG+TGG + chr4_2:29418664-29418683 None:intergenic 50.0%
CCATGTTTGGGAAGAGAGTG+TGG + chr4_2:29418667-29418686 None:intergenic 50.0%
CCACACTCTCTTCCCAAACA+TGG - chr4_2:29418664-29418683 Msa0597370:three_prime_UTR 50.0%
GGGGGTGAGAATAGAAGAAG+AGG + chr4_2:29418738-29418757 None:intergenic 50.0%
AGAAGGAGAAAGGTCTTGGG+GGG + chr4_2:29418756-29418775 None:intergenic 50.0%
GGAGAGAGGAAGAAGGTTCT+GGG + chr4_2:29418794-29418813 None:intergenic 50.0%
TGTCAGACAGTGGCATGTGT+CGG - chr4_2:29419575-29419594 Msa0597370:intron 50.0%
GCGATCGGAAGTGGAATGAT+TGG - chr4_2:29419958-29419977 Msa0597370:intron 50.0%
GCAATCACCTGACCAATCGA+TGG - chr4_2:29420122-29420141 Msa0597370:intron 50.0%
CCCCCAATGTAACCAATCCT+TGG - chr4_2:29420249-29420268 Msa0597370:intron 50.0%
TATACGGTTGCTGCCTACCA+AGG + chr4_2:29420269-29420288 None:intergenic 50.0%
CGGTATGTGGTACGGGTATA+CGG + chr4_2:29420285-29420304 None:intergenic 50.0%
TGTGTTCAGCCAAGAGGTGA+GGG - chr4_2:29420355-29420374 Msa0597370:intron 50.0%
GGTGTGGGTACCAACTGATT+CGG - chr4_2:29420406-29420425 Msa0597370:intron 50.0%
GGTCAATGTTGAGGCGGAAA+TGG + chr4_2:29421467-29421486 None:intergenic 50.0%
TGGTAGACATTGCGTTGTCC+TGG - chr4_2:29421847-29421866 Msa0597370:intron 50.0%
ACGTCCTCTATGTCAATGCC+AGG + chr4_2:29421868-29421887 None:intergenic 50.0%
TCCTACCCTTGTGGTGTATC+TGG - chr4_2:29422644-29422663 Msa0597370:intron 50.0%
TCCAGATACACCACAAGGGT+AGG + chr4_2:29422648-29422667 None:intergenic 50.0%
GTGGTGTATCTGGAGAGTTC+TGG - chr4_2:29422654-29422673 Msa0597370:intron 50.0%
GACACTACCTATCTAGTGGG+TGG + chr4_2:29422710-29422729 None:intergenic 50.0%
TAAGCGGCGATTCAATTGGC+TGG + chr4_2:29422901-29422920 None:intergenic 50.0%
ACTTGCAGGAGCAGATTTGG+TGG - chr4_2:29423003-29423022 Msa0597370:intron 50.0%
! CTTGCAGGAGCAGATTTGGT+GGG - chr4_2:29423004-29423023 Msa0597370:intron 50.0%
ACATCAGAGCGTGACGATAC+AGG - chr4_2:29423234-29423253 Msa0597370:intron 50.0%
CATCAGAGCGTGACGATACA+GGG - chr4_2:29423235-29423254 Msa0597370:intron 50.0%
GTGACGATACAGGGACCAAT+GGG - chr4_2:29423244-29423263 Msa0597370:intron 50.0%
!! TGCTAGCCTTGGGAAGATTC+TGG - chr4_2:29423347-29423366 Msa0597370:intron 50.0%
!! GCTAGCCTTGGGAAGATTCT+GGG - chr4_2:29423348-29423367 Msa0597370:intron 50.0%
!! CTAGCCTTGGGAAGATTCTG+GGG - chr4_2:29423349-29423368 Msa0597370:intron 50.0%
GGATTTGGCATGAGTCCTCT+TGG + chr4_2:29423375-29423394 None:intergenic 50.0%
! GCTGTTACAGTGCCAGCTTT+TGG + chr4_2:29423396-29423415 None:intergenic 50.0%
AACAAACCATCGGGTGCGAA+AGG - chr4_2:29423793-29423812 Msa0597370:intron 50.0%
TGCGCACATATGCTCAGCAA+TGG - chr4_2:29423831-29423850 Msa0597370:CDS 50.0%
GCGCACATATGCTCAGCAAT+GGG - chr4_2:29423832-29423851 Msa0597370:CDS 50.0%
CGCACATATGCTCAGCAATG+GGG - chr4_2:29423833-29423852 Msa0597370:CDS 50.0%
TAGTCCTTTGGCCCAAGATG+AGG - chr4_2:29424068-29424087 Msa0597370:CDS 50.0%
! GAGAGTGTGGTGGTGAAAGC+AGG + chr4_2:29418654-29418673 None:intergenic 55.0%
GGGAGAGAGGAAGAAGGTTC+TGG + chr4_2:29418795-29418814 None:intergenic 55.0%
AACGAGGGGAGAGAGGAAGA+AGG + chr4_2:29418801-29418820 None:intergenic 55.0%
GCTTCAAAACGAGGGGAGAG+AGG + chr4_2:29418808-29418827 None:intergenic 55.0%
AAGGGGTTCATCGTTCACGC+AGG - chr4_2:29420015-29420034 Msa0597370:intron 55.0%
CATCGTTCACGCAGGAGACT+TGG - chr4_2:29420023-29420042 Msa0597370:intron 55.0%
GGTTGCTGCCTACCAAGGAT+TGG + chr4_2:29420264-29420283 None:intergenic 55.0%
CTAGGGTGTGTTCAGCCAAG+AGG - chr4_2:29420349-29420368 Msa0597370:intron 55.0%
GTGTGTTCAGCCAAGAGGTG+AGG - chr4_2:29420354-29420373 Msa0597370:intron 55.0%
GTAAGTCTGCCGAAGGGAAC+TGG - chr4_2:29421622-29421641 Msa0597370:intron 55.0%
AATGGGTGGCGTATGGCACA+AGG - chr4_2:29422620-29422639 Msa0597370:intron 55.0%
GCACAAGGTTCCTACCCTTG+TGG - chr4_2:29422635-29422654 Msa0597370:intron 55.0%
GTCAAGCCCACCCACTAGAT+AGG - chr4_2:29422700-29422719 Msa0597370:intron 55.0%
!! AGCAGATTTGGTGGGTGGAG+AGG - chr4_2:29423012-29423031 Msa0597370:intron 55.0%
CGTGACGATACAGGGACCAA+TGG - chr4_2:29423243-29423262 Msa0597370:intron 55.0%
TTGGCCCCAGAATCTTCCCA+AGG + chr4_2:29423356-29423375 None:intergenic 55.0%
TACACACCTTTCGCACCCGA+TGG + chr4_2:29423802-29423821 None:intergenic 55.0%
GCCAAGAGGTGAGGGAACTC+CGG - chr4_2:29420363-29420382 Msa0597370:intron 60.0%
!! GCAGGAGCAGATTTGGTGGG+TGG - chr4_2:29423007-29423026 Msa0597370:intron 60.0%
!! GGGAAGATTCTGGGGCCAAG+AGG - chr4_2:29423357-29423376 Msa0597370:intron 60.0%
! CGGGTGCGAAAGGTGTGTAC+TGG - chr4_2:29423803-29423822 Msa0597370:CDS 60.0%
CAGCAATGGGGCCTTCAGTC+AGG - chr4_2:29423845-29423864 Msa0597370:CDS 60.0%
GCCGGAGTTCCCTCACCTCT+TGG + chr4_2:29420367-29420386 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 29418598 29424223 29418598 ID=Msa0597370;Name=Msa0597370
chr4_2 mRNA 29418598 29424223 29418598 ID=Msa0597370-mRNA-1;Parent=Msa0597370;Name=Msa0597370-mRNA-1;_AED=0.07;_eAED=0.07;_QI=49|1|1|1|1|1|7|311|360
chr4_2 exon 29418598 29419043 29418598 ID=Msa0597370-mRNA-1:exon:7528;Parent=Msa0597370-mRNA-1
chr4_2 exon 29419123 29419248 29419123 ID=Msa0597370-mRNA-1:exon:7527;Parent=Msa0597370-mRNA-1
chr4_2 exon 29419393 29419476 29419393 ID=Msa0597370-mRNA-1:exon:7526;Parent=Msa0597370-mRNA-1
chr4_2 exon 29419713 29419840 29419713 ID=Msa0597370-mRNA-1:exon:7525;Parent=Msa0597370-mRNA-1
chr4_2 exon 29421145 29421199 29421145 ID=Msa0597370-mRNA-1:exon:7524;Parent=Msa0597370-mRNA-1
chr4_2 exon 29421303 29421482 29421303 ID=Msa0597370-mRNA-1:exon:7523;Parent=Msa0597370-mRNA-1
chr4_2 exon 29423800 29424223 29423800 ID=Msa0597370-mRNA-1:exon:7522;Parent=Msa0597370-mRNA-1
chr4_2 five_prime_UTR 29424175 29424223 29424175 ID=Msa0597370-mRNA-1:five_prime_utr;Parent=Msa0597370-mRNA-1
chr4_2 CDS 29423800 29424174 29423800 ID=Msa0597370-mRNA-1:cds;Parent=Msa0597370-mRNA-1
chr4_2 CDS 29421303 29421482 29421303 ID=Msa0597370-mRNA-1:cds;Parent=Msa0597370-mRNA-1
chr4_2 CDS 29421145 29421199 29421145 ID=Msa0597370-mRNA-1:cds;Parent=Msa0597370-mRNA-1
chr4_2 CDS 29419713 29419840 29419713 ID=Msa0597370-mRNA-1:cds;Parent=Msa0597370-mRNA-1
chr4_2 CDS 29419393 29419476 29419393 ID=Msa0597370-mRNA-1:cds;Parent=Msa0597370-mRNA-1
chr4_2 CDS 29419123 29419248 29419123 ID=Msa0597370-mRNA-1:cds;Parent=Msa0597370-mRNA-1
chr4_2 CDS 29418909 29419043 29418909 ID=Msa0597370-mRNA-1:cds;Parent=Msa0597370-mRNA-1
chr4_2 three_prime_UTR 29418598 29418908 29418598 ID=Msa0597370-mRNA-1:three_prime_utr;Parent=Msa0597370-mRNA-1
Gene Sequence

>Msa0597370

ATGTCCTGCTTTCACCACCACACTCTCTTCCCAAACATGGCTTCATGTACAACAACAACTTCATCATCTTCTCTTATGCTAACACACCCCTCTTCTTCTATTCTCACCCCCCAAGACCTTTCTCCTTCTTCTCTCCGTTCTTTTCCCAGAACCTTCTTCCTCTCTCCCCTCGTTTTGAAGCCTACTAAGTCGGTTAATCTAACCTACCAGTCTAGGTCTTCGATTTTACTTGCTTCCGCTGTTACTGCTGATGTTGCTGAAACTGTCGATGAAGATGAGAAAGATGGTGTTGATGATGGTGTTGCTGAAACTGTGACTGTTGTTACTACTAAGCCTAAGAAAGGGAAAGCTGCATTACTTCTCAAGAGTGATAGGGTGAGATCTAAGAGATTCTTGGAAATTCAAAAATTGAGGGAGTTTAAGAAAGAGTACGACTTGAAGACAGCAATTTCTTTGGTAAAAGAAACAGCTAAAACCAAGTTTGTAGAAACAGTAGAAGCCCATTTCCGCCTCAACATTGACCCTAAATATAATGATCAACAGTTAAGAGCTACAGTAAGTCTGCCGAAGGGAACTGGAAAACCCATAAAAATAGCCGTTCTTACTCAAGGTGAAAAGTTCGATGAAGCAAAACTTGCAGGAGCAGATTTGGTGGGTGGAGAGGATCTGATAGAAGAGATAAAAGGAGGATACATGGAATTTGATAAATTAATTGCTTCTCCAGATATGATGCCTAAGGTTGCTAGCCTTGGGAAGATTCTGGGGCCAAGAGGACTCATGCCAAATCCAAAAGCTGGCACTGTAACAGCTAATATTCCTCAGGCTATAGCAGAATTCAAACAGGGAAAAGTTGAATACAGGGCAGATAAAACAGGAATCGTTCACTTGCCTTTTGGAAAAGCCGATTTTTCAGAAGAGGATCTTCTTACAAACTTGCTCTCTGCAATAAAATCAGTAGAGGCAAACAAACCATCGGGTGCGAAAGGTGTGTACTGGAAAAGTGCGCACATATGCTCAGCAATGGGGCCTTCAGTCAGGTTAAATATCAAGGAGATGCTTGATTACAGACTTCAATCAGAATAG

Protein sequence

>Msa0597370

MSCFHHHTLFPNMASCTTTTSSSSLMLTHPSSSILTPQDLSPSSLRSFPRTFFLSPLVLKPTKSVNLTYQSRSSILLASAVTADVAETVDEDEKDGVDDGVAETVTVVTTKPKKGKAALLLKSDRVRSKRFLEIQKLREFKKEYDLKTAISLVKETAKTKFVETVEAHFRLNIDPKYNDQQLRATVSLPKGTGKPIKIAVLTQGEKFDEAKLAGADLVGGEDLIEEIKGGYMEFDKLIASPDMMPKVASLGKILGPRGLMPNPKAGTVTANIPQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLTNLLSAIKSVEANKPSGAKGVYWKSAHICSAMGPSVRLNIKEMLDYRLQSE*