AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0042520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0042520 MtrunA17_Chr1g0190931 90.957 188 17 0 1 188 51 238 1.94e-127 358
Msa0042520 MtrunA17_Chr8g0348281 31.298 131 83 3 48 175 91 217 9.74e-19 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0042520 AT3G04890.1 57.714 175 74 0 7 181 33 207 2.41e-70 213
Msa0042520 AT3G04890.3 57.714 175 74 0 7 181 37 211 3.77e-70 212
Msa0042520 AT3G04890.2 52.795 161 76 0 7 167 33 193 1.40e-56 178
Msa0042520 AT3G04890.4 52.795 161 76 0 7 167 37 197 2.16e-56 177
Msa0042520 AT2G46100.1 30.556 180 108 6 11 182 60 230 3.16e-21 87.8

Find 55 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATCATCAATACTTGAAAC+TGG 0.314009 1_1:-73400602 None:intergenic
GATCCAACTATTAAATTTAG+TGG 0.322543 1_1:+73400883 Msa0042520:CDS
CTAGTTATGCATATGCTTAT+CGG 0.325160 1_1:-73401863 None:intergenic
GCATAGATACCTTGTTTGTT+GGG 0.356498 1_1:-73400219 None:intergenic
GGCATAGATACCTTGTTTGT+TGG 0.370365 1_1:-73400220 None:intergenic
TGCGTGCATCTTGGAAATTA+AGG 0.376993 1_1:+73401351 Msa0042520:CDS
TTACCACTAAATTTAATAGT+TGG 0.387007 1_1:-73400886 None:intergenic
TGCTTAGAAGTTAGAAGAAT+AGG 0.394568 1_1:-73399818 None:intergenic
TGGAAGTGTAAGACTATTGT+AGG 0.401496 1_1:-73399918 None:intergenic
CTATATAAATTAAGAATCAT+AGG 0.403118 1_1:-73401763 None:intergenic
TGATGTTCTAATCATCATAA+AGG 0.421681 1_1:+73400619 Msa0042520:CDS
GTTGAATGTCATGGCGGGTG+AGG 0.439811 1_1:+73401708 Msa0042520:exon
ATAGTTGTTAATGACGCAAT+TGG 0.441004 1_1:+73401804 Msa0042520:three_prime_UTR
CATAAAGAAGTCGAATGAAA+TGG 0.444668 1_1:+73399866 Msa0042520:intron
ATAATGCAGGATGTTGAATC+TGG 0.446617 1_1:+73401317 Msa0042520:intron
AGGCCTCTGATTGCTATTGA+TGG 0.449120 1_1:+73401477 Msa0042520:CDS
CGATAAGCATATGCATAACT+AGG 0.472187 1_1:+73401864 Msa0042520:three_prime_UTR
CGCCATGACATTCAACCACC+TGG 0.479324 1_1:-73401701 None:intergenic
GATCTTTAGTAGTCTAATTG+AGG 0.482759 1_1:-73401202 None:intergenic
GGAAGTGTAAGACTATTGTA+GGG 0.494243 1_1:-73399917 None:intergenic
TTGAATGTCATGGCGGGTGA+GGG 0.513980 1_1:+73401709 Msa0042520:exon
ATTGAGGCACAGTCGAAGAA+TGG 0.515153 1_1:-73401186 None:intergenic
AGATACCTTGTTTGTTGGGG+AGG 0.519985 1_1:-73400215 None:intergenic
GTTTAAGCAATGTTTACTAC+AGG 0.527462 1_1:+73401909 Msa0042520:three_prime_UTR
GGACGCCACCCTTGCAGTTG+CGG 0.535446 1_1:+73400051 Msa0042520:intron
TAGACTACTAAAGATCGAAA+AGG 0.538132 1_1:+73401209 Msa0042520:CDS
CATAGATACCTTGTTTGTTG+GGG 0.538359 1_1:-73400218 None:intergenic
AGACATTTATTACCTGGGAG+TGG 0.539869 1_1:-73399938 None:intergenic
TCATTCGGCATATTGAGAGT+TGG 0.540063 1_1:+73401630 Msa0042520:CDS
CATCATCAATACTTGAAACT+GGG 0.541779 1_1:-73400601 None:intergenic
GTGTTGTTTCCGCAACTGCA+AGG 0.546902 1_1:-73400060 None:intergenic
GGGGAGGAGAGAAAAGCCTC+AGG 0.553407 1_1:-73400199 None:intergenic
GCGGAGTGACGGAGCTCCTG+AGG 0.554237 1_1:+73400183 Msa0042520:CDS
TGTTGTTTCCGCAACTGCAA+GGG 0.559118 1_1:-73400059 None:intergenic
GATTGCAGTGAGCGGAGTGA+CGG 0.565614 1_1:+73400172 Msa0042520:CDS
AGAAAGAAATGAAACCCCTC+AGG 0.569312 1_1:+73400142 Msa0042520:CDS
AACCAGGTGGTTGAATGTCA+TGG 0.570801 1_1:+73401699 Msa0042520:exon
TGTTTCCGCAACTGCAAGGG+TGG 0.572762 1_1:-73400056 None:intergenic
CTGCAATCTTCAGAACCTGA+GGG 0.576531 1_1:-73400157 None:intergenic
AGTCTTACACTTCCACTCCC+AGG 0.589694 1_1:+73399926 Msa0042520:five_prime_UTR
TCTCTCCTCCCCAACAAACA+AGG 0.591145 1_1:+73400210 Msa0042520:CDS
GACTTGTGCAATTTATAACA+TGG 0.596814 1_1:+73400115 Msa0042520:exon
CATTAACAACTATATACAGT+AGG 0.611061 1_1:-73401794 None:intergenic
GGACCAACTTAAAACTTCCG+TGG 0.611426 1_1:+73401454 Msa0042520:intron
ACTGATAGATGAGAAGGGAA+AGG 0.611669 1_1:-73401936 None:intergenic
ATAGCAATCAGAGGCCTCCA+CGG 0.621582 1_1:-73401471 None:intergenic
AGGTGGTTGAATGTCATGGC+GGG 0.631232 1_1:+73401703 Msa0042520:exon
ACTGCAATCTTCAGAACCTG+AGG 0.643213 1_1:-73400158 None:intergenic
ATCATCAATACTTGAAACTG+GGG 0.643651 1_1:-73400600 None:intergenic
GTTCTGAAGATTGCAGTGAG+CGG 0.663984 1_1:+73400164 Msa0042520:CDS
TGCAATCTTCAGAACCTGAG+GGG 0.670652 1_1:-73400156 None:intergenic
CTTCCATCAATAGCAATCAG+AGG 0.678084 1_1:-73401480 None:intergenic
GAAGTGTAAGACTATTGTAG+GGG 0.685621 1_1:-73399916 None:intergenic
CCAACTTAAAACTTCCGTGG+AGG 0.722693 1_1:+73401457 Msa0042520:CDS
CAGGTGGTTGAATGTCATGG+CGG 0.757865 1_1:+73401702 Msa0042520:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATAAATTAATAATGC+AGG + chr1_1:73401304-73401323 Msa0042520:intron 10.0%
!! ATTATATAAATTAATAATGC+AGG + chr1_1:73401304-73401323 Msa0042520:intron 10.0%
!! TGAAAAAATATTTGATAAGA+GGG - chr1_1:73400706-73400725 None:intergenic 15.0%
!! ATGAAAAAATATTTGATAAG+AGG - chr1_1:73400707-73400726 None:intergenic 15.0%
!! CTATATAAATTAAGAATCAT+AGG - chr1_1:73401766-73401785 None:intergenic 15.0%
!! TGAAAAAATATTTGATAAGA+GGG - chr1_1:73400706-73400725 None:intergenic 15.0%
!! ATGAAAAAATATTTGATAAG+AGG - chr1_1:73400707-73400726 None:intergenic 15.0%
!! CTATATAAATTAAGAATCAT+AGG - chr1_1:73401766-73401785 None:intergenic 15.0%
!! TTCTTTATGATTCAATTCAT+TGG - chr1_1:73399855-73399874 None:intergenic 20.0%
!! AATAAAGACATTTATTACCT+GGG - chr1_1:73399946-73399965 None:intergenic 20.0%
!! AACACTGCATATTAATAAAT+TGG - chr1_1:73400546-73400565 None:intergenic 20.0%
!! TTACCACTAAATTTAATAGT+TGG - chr1_1:73400889-73400908 None:intergenic 20.0%
!!! TTAAAGATTTGAAACATCTA+GGG - chr1_1:73401032-73401051 None:intergenic 20.0%
!!! TTTAAAGATTTGAAACATCT+AGG - chr1_1:73401033-73401052 None:intergenic 20.0%
!! TTCTTTATGATTCAATTCAT+TGG - chr1_1:73399855-73399874 None:intergenic 20.0%
!! AATAAAGACATTTATTACCT+GGG - chr1_1:73399946-73399965 None:intergenic 20.0%
!! AACACTGCATATTAATAAAT+TGG - chr1_1:73400546-73400565 None:intergenic 20.0%
!! TTACCACTAAATTTAATAGT+TGG - chr1_1:73400889-73400908 None:intergenic 20.0%
!!! TTAAAGATTTGAAACATCTA+GGG - chr1_1:73401032-73401051 None:intergenic 20.0%
!!! TTTAAAGATTTGAAACATCT+AGG - chr1_1:73401033-73401052 None:intergenic 20.0%
! GAATAAAGACATTTATTACC+TGG - chr1_1:73399947-73399966 None:intergenic 25.0%
! ATAAAAGTAGTTGACACATA+TGG - chr1_1:73400370-73400389 None:intergenic 25.0%
! TGATGTTCTAATCATCATAA+AGG + chr1_1:73400619-73400638 Msa0042520:CDS 25.0%
!! TCTTACTTTGTTTGAGATTT+AGG + chr1_1:73400817-73400836 Msa0042520:intron 25.0%
!! CTTACTTTGTTTGAGATTTA+GGG + chr1_1:73400818-73400837 Msa0042520:intron 25.0%
! GATCCAACTATTAAATTTAG+TGG + chr1_1:73400883-73400902 Msa0042520:CDS 25.0%
! AGACTAGCATAAGATATTAT+AGG - chr1_1:73400927-73400946 None:intergenic 25.0%
! AAACAACTATAAGAGCTAAA+AGG + chr1_1:73401051-73401070 Msa0042520:intron 25.0%
!!! ATTTTGTTTGACAGATCATT+CGG + chr1_1:73401615-73401634 Msa0042520:intron 25.0%
!!! ATTTTCAAGTTTGAAAAACC+AGG + chr1_1:73401683-73401702 Msa0042520:CDS 25.0%
! CATTAACAACTATATACAGT+AGG - chr1_1:73401797-73401816 None:intergenic 25.0%
! AGATGCTTAGAAAAATATAC+AGG - chr1_1:73401832-73401851 None:intergenic 25.0%
! GAATAAAGACATTTATTACC+TGG - chr1_1:73399947-73399966 None:intergenic 25.0%
! ATAAAAGTAGTTGACACATA+TGG - chr1_1:73400370-73400389 None:intergenic 25.0%
! TGATGTTCTAATCATCATAA+AGG + chr1_1:73400619-73400638 Msa0042520:CDS 25.0%
!! TCTTACTTTGTTTGAGATTT+AGG + chr1_1:73400817-73400836 Msa0042520:intron 25.0%
!! CTTACTTTGTTTGAGATTTA+GGG + chr1_1:73400818-73400837 Msa0042520:intron 25.0%
! GATCCAACTATTAAATTTAG+TGG + chr1_1:73400883-73400902 Msa0042520:CDS 25.0%
! AGACTAGCATAAGATATTAT+AGG - chr1_1:73400927-73400946 None:intergenic 25.0%
! AAACAACTATAAGAGCTAAA+AGG + chr1_1:73401051-73401070 Msa0042520:intron 25.0%
!!! ATTTTGTTTGACAGATCATT+CGG + chr1_1:73401615-73401634 Msa0042520:intron 25.0%
!!! ATTTTCAAGTTTGAAAAACC+AGG + chr1_1:73401683-73401702 Msa0042520:CDS 25.0%
! CATTAACAACTATATACAGT+AGG - chr1_1:73401797-73401816 None:intergenic 25.0%
! AGATGCTTAGAAAAATATAC+AGG - chr1_1:73401832-73401851 None:intergenic 25.0%
CATAAAGAAGTCGAATGAAA+TGG + chr1_1:73399866-73399885 Msa0042520:intron 30.0%
GACTTGTGCAATTTATAACA+TGG + chr1_1:73400115-73400134 Msa0042520:exon 30.0%
AAGTGTTTGTGCTACATAAA+TGG - chr1_1:73400244-73400263 None:intergenic 30.0%
ATCATCAATACTTGAAACTG+GGG - chr1_1:73400603-73400622 None:intergenic 30.0%
CATCATCAATACTTGAAACT+GGG - chr1_1:73400604-73400623 None:intergenic 30.0%
ACATCATCAATACTTGAAAC+TGG - chr1_1:73400605-73400624 None:intergenic 30.0%
! TTCAACATCATTTCCTTTTC+TGG + chr1_1:73400777-73400796 Msa0042520:intron 30.0%
TTTAGATTACATGCCAGAAA+AGG - chr1_1:73400793-73400812 None:intergenic 30.0%
TCTATGATGTATGATCATAC+AGG + chr1_1:73401126-73401145 Msa0042520:intron 30.0%
GATCTTTAGTAGTCTAATTG+AGG - chr1_1:73401205-73401224 None:intergenic 30.0%
TAGACTACTAAAGATCGAAA+AGG + chr1_1:73401209-73401228 Msa0042520:CDS 30.0%
ATTAACATGCTTAATGAGCA+AGG - chr1_1:73401383-73401402 None:intergenic 30.0%
GTTTATTATCTCTCAATCTC+AGG + chr1_1:73401433-73401452 Msa0042520:intron 30.0%
! ATTATGAGTCGAAAGTTTTG+AGG - chr1_1:73401560-73401579 None:intergenic 30.0%
! AAGAATCATAGGCATTTTCA+TGG - chr1_1:73401755-73401774 None:intergenic 30.0%
ATAGTTGTTAATGACGCAAT+TGG + chr1_1:73401804-73401823 Msa0042520:three_prime_UTR 30.0%
CTAGTTATGCATATGCTTAT+CGG - chr1_1:73401866-73401885 None:intergenic 30.0%
GTTTAAGCAATGTTTACTAC+AGG + chr1_1:73401909-73401928 Msa0042520:three_prime_UTR 30.0%
CTTAGAAGTTAGAAGAATAG+AGG - chr1_1:73399819-73399838 None:intergenic 30.0%
CATAAAGAAGTCGAATGAAA+TGG + chr1_1:73399866-73399885 Msa0042520:intron 30.0%
GACTTGTGCAATTTATAACA+TGG + chr1_1:73400115-73400134 Msa0042520:exon 30.0%
AAGTGTTTGTGCTACATAAA+TGG - chr1_1:73400244-73400263 None:intergenic 30.0%
ATCATCAATACTTGAAACTG+GGG - chr1_1:73400603-73400622 None:intergenic 30.0%
CATCATCAATACTTGAAACT+GGG - chr1_1:73400604-73400623 None:intergenic 30.0%
ACATCATCAATACTTGAAAC+TGG - chr1_1:73400605-73400624 None:intergenic 30.0%
! TTCAACATCATTTCCTTTTC+TGG + chr1_1:73400777-73400796 Msa0042520:intron 30.0%
TTTAGATTACATGCCAGAAA+AGG - chr1_1:73400793-73400812 None:intergenic 30.0%
TCTATGATGTATGATCATAC+AGG + chr1_1:73401126-73401145 Msa0042520:intron 30.0%
GATCTTTAGTAGTCTAATTG+AGG - chr1_1:73401205-73401224 None:intergenic 30.0%
TAGACTACTAAAGATCGAAA+AGG + chr1_1:73401209-73401228 Msa0042520:CDS 30.0%
ATTAACATGCTTAATGAGCA+AGG - chr1_1:73401383-73401402 None:intergenic 30.0%
GTTTATTATCTCTCAATCTC+AGG + chr1_1:73401433-73401452 Msa0042520:intron 30.0%
! ATTATGAGTCGAAAGTTTTG+AGG - chr1_1:73401560-73401579 None:intergenic 30.0%
! AAGAATCATAGGCATTTTCA+TGG - chr1_1:73401755-73401774 None:intergenic 30.0%
ATAGTTGTTAATGACGCAAT+TGG + chr1_1:73401804-73401823 Msa0042520:three_prime_UTR 30.0%
CTAGTTATGCATATGCTTAT+CGG - chr1_1:73401866-73401885 None:intergenic 30.0%
GTTTAAGCAATGTTTACTAC+AGG + chr1_1:73401909-73401928 Msa0042520:three_prime_UTR 30.0%
GAAGTGTAAGACTATTGTAG+GGG - chr1_1:73399919-73399938 None:intergenic 35.0%
! GGAAGTGTAAGACTATTGTA+GGG - chr1_1:73399920-73399939 None:intergenic 35.0%
! TGGAAGTGTAAGACTATTGT+AGG - chr1_1:73399921-73399940 None:intergenic 35.0%
CTGAATCTCTTGTTAAGACT+AGG + chr1_1:73400030-73400049 Msa0042520:intron 35.0%
! CATAGATACCTTGTTTGTTG+GGG - chr1_1:73400221-73400240 None:intergenic 35.0%
! GCATAGATACCTTGTTTGTT+GGG - chr1_1:73400222-73400241 None:intergenic 35.0%
CAACATTGACGCTTAAACAT+TGG - chr1_1:73400337-73400356 None:intergenic 35.0%
! ACATAAGTTGACGATTAGTG+AGG - chr1_1:73400495-73400514 None:intergenic 35.0%
TGATGTATGATCATACAGGT+AGG + chr1_1:73401130-73401149 Msa0042520:intron 35.0%
GATGTATGATCATACAGGTA+GGG + chr1_1:73401131-73401150 Msa0042520:intron 35.0%
ATAATGCAGGATGTTGAATC+TGG + chr1_1:73401317-73401336 Msa0042520:intron 35.0%
TCGAAATCCATGTTAACTAG+TGG + chr1_1:73401585-73401604 Msa0042520:intron 35.0%
! TTCAAGTTTGAAAAACCAGG+TGG + chr1_1:73401686-73401705 Msa0042520:CDS 35.0%
CGATAAGCATATGCATAACT+AGG + chr1_1:73401864-73401883 Msa0042520:three_prime_UTR 35.0%
GAAGTGTAAGACTATTGTAG+GGG - chr1_1:73399919-73399938 None:intergenic 35.0%
! GGAAGTGTAAGACTATTGTA+GGG - chr1_1:73399920-73399939 None:intergenic 35.0%
! TGGAAGTGTAAGACTATTGT+AGG - chr1_1:73399921-73399940 None:intergenic 35.0%
CTGAATCTCTTGTTAAGACT+AGG + chr1_1:73400030-73400049 Msa0042520:intron 35.0%
! CATAGATACCTTGTTTGTTG+GGG - chr1_1:73400221-73400240 None:intergenic 35.0%
! GCATAGATACCTTGTTTGTT+GGG - chr1_1:73400222-73400241 None:intergenic 35.0%
CAACATTGACGCTTAAACAT+TGG - chr1_1:73400337-73400356 None:intergenic 35.0%
! ACATAAGTTGACGATTAGTG+AGG - chr1_1:73400495-73400514 None:intergenic 35.0%
TGATGTATGATCATACAGGT+AGG + chr1_1:73401130-73401149 Msa0042520:intron 35.0%
GATGTATGATCATACAGGTA+GGG + chr1_1:73401131-73401150 Msa0042520:intron 35.0%
ATAATGCAGGATGTTGAATC+TGG + chr1_1:73401317-73401336 Msa0042520:intron 35.0%
TCGAAATCCATGTTAACTAG+TGG + chr1_1:73401585-73401604 Msa0042520:intron 35.0%
! TTCAAGTTTGAAAAACCAGG+TGG + chr1_1:73401686-73401705 Msa0042520:CDS 35.0%
CGATAAGCATATGCATAACT+AGG + chr1_1:73401864-73401883 Msa0042520:three_prime_UTR 35.0%
! GCAAAAACATGCTGCTTCAA+CGG + chr1_1:73399888-73399907 Msa0042520:five_prime_UTR 40.0%
AGACATTTATTACCTGGGAG+TGG - chr1_1:73399941-73399960 None:intergenic 40.0%
! GCACAAGTCTTTTTGCTACA+CGG - chr1_1:73400104-73400123 None:intergenic 40.0%
AGAAAGAAATGAAACCCCTC+AGG + chr1_1:73400142-73400161 Msa0042520:CDS 40.0%
! GGCATAGATACCTTGTTTGT+TGG - chr1_1:73400223-73400242 None:intergenic 40.0%
ATGTGTCAAGTGTACGACAT+TGG - chr1_1:73400304-73400323 None:intergenic 40.0%
GCTTAAACATTGGCCAATGT+CGG - chr1_1:73400327-73400346 None:intergenic 40.0%
GGTGTATGTGTATGTGTAAG+AGG + chr1_1:73400424-73400443 Msa0042520:intron 40.0%
TGTGTATGTGTAAGAGGTAG+TGG + chr1_1:73400430-73400449 Msa0042520:intron 40.0%
! CAAATTTTCTGCGTGCATCT+TGG + chr1_1:73401342-73401361 Msa0042520:CDS 40.0%
TGCGTGCATCTTGGAAATTA+AGG + chr1_1:73401351-73401370 Msa0042520:CDS 40.0%
CTTCCATCAATAGCAATCAG+AGG - chr1_1:73401483-73401502 None:intergenic 40.0%
GTTGCAACCACTAGTTAACA+TGG - chr1_1:73401595-73401614 None:intergenic 40.0%
TCATTCGGCATATTGAGAGT+TGG + chr1_1:73401630-73401649 Msa0042520:CDS 40.0%
! GCAAAAACATGCTGCTTCAA+CGG + chr1_1:73399888-73399907 Msa0042520:five_prime_UTR 40.0%
AGACATTTATTACCTGGGAG+TGG - chr1_1:73399941-73399960 None:intergenic 40.0%
! GCACAAGTCTTTTTGCTACA+CGG - chr1_1:73400104-73400123 None:intergenic 40.0%
AGAAAGAAATGAAACCCCTC+AGG + chr1_1:73400142-73400161 Msa0042520:CDS 40.0%
! GGCATAGATACCTTGTTTGT+TGG - chr1_1:73400223-73400242 None:intergenic 40.0%
ATGTGTCAAGTGTACGACAT+TGG - chr1_1:73400304-73400323 None:intergenic 40.0%
GCTTAAACATTGGCCAATGT+CGG - chr1_1:73400327-73400346 None:intergenic 40.0%
GGTGTATGTGTATGTGTAAG+AGG + chr1_1:73400424-73400443 Msa0042520:intron 40.0%
TGTGTATGTGTAAGAGGTAG+TGG + chr1_1:73400430-73400449 Msa0042520:intron 40.0%
! CAAATTTTCTGCGTGCATCT+TGG + chr1_1:73401342-73401361 Msa0042520:CDS 40.0%
TGCGTGCATCTTGGAAATTA+AGG + chr1_1:73401351-73401370 Msa0042520:CDS 40.0%
CTTCCATCAATAGCAATCAG+AGG - chr1_1:73401483-73401502 None:intergenic 40.0%
GTTGCAACCACTAGTTAACA+TGG - chr1_1:73401595-73401614 None:intergenic 40.0%
TCATTCGGCATATTGAGAGT+TGG + chr1_1:73401630-73401649 Msa0042520:CDS 40.0%
!! TGTTGTTTCCGCAACTGCAA+GGG - chr1_1:73400062-73400081 None:intergenic 45.0%
TGCAATCTTCAGAACCTGAG+GGG - chr1_1:73400159-73400178 None:intergenic 45.0%
CTGCAATCTTCAGAACCTGA+GGG - chr1_1:73400160-73400179 None:intergenic 45.0%
ACTGCAATCTTCAGAACCTG+AGG - chr1_1:73400161-73400180 None:intergenic 45.0%
!! GTTCTGAAGATTGCAGTGAG+CGG + chr1_1:73400164-73400183 Msa0042520:CDS 45.0%
! AGATACCTTGTTTGTTGGGG+AGG - chr1_1:73400218-73400237 None:intergenic 45.0%
CTTCAGAGTGAAGACGTCTT+TGG + chr1_1:73400261-73400280 Msa0042520:intron 45.0%
ACACTTGACACATCCGACAT+TGG + chr1_1:73400311-73400330 Msa0042520:intron 45.0%
ATTACTACCAGCGTCATGTC+TGG + chr1_1:73400398-73400417 Msa0042520:intron 45.0%
! GAGGTAGTGGTTCATGTTGT+TGG + chr1_1:73400443-73400462 Msa0042520:intron 45.0%
ATGCATATTTCCCTGGCAGT+TGG - chr1_1:73400471-73400490 None:intergenic 45.0%
GTGAGGAATGCATATTTCCC+TGG - chr1_1:73400478-73400497 None:intergenic 45.0%
!!! GACAGCGCTTATTTTGTCAC+AGG + chr1_1:73400650-73400669 Msa0042520:CDS 45.0%
ATTGAGGCACAGTCGAAGAA+TGG - chr1_1:73401189-73401208 None:intergenic 45.0%
GGACCAACTTAAAACTTCCG+TGG + chr1_1:73401454-73401473 Msa0042520:intron 45.0%
!!! CCTCCACGGAAGTTTTAAGT+TGG - chr1_1:73401460-73401479 None:intergenic 45.0%
CCAACTTAAAACTTCCGTGG+AGG + chr1_1:73401457-73401476 Msa0042520:CDS 45.0%
! AGGCCTCTGATTGCTATTGA+TGG + chr1_1:73401477-73401496 Msa0042520:CDS 45.0%
!!! TCGAAAGTTTTGAGGCAAGG+AGG - chr1_1:73401552-73401571 None:intergenic 45.0%
!!! GAGTCGAAAGTTTTGAGGCA+AGG - chr1_1:73401555-73401574 None:intergenic 45.0%
AACCAGGTGGTTGAATGTCA+TGG + chr1_1:73401699-73401718 Msa0042520:exon 45.0%
!! TGTTGTTTCCGCAACTGCAA+GGG - chr1_1:73400062-73400081 None:intergenic 45.0%
TGCAATCTTCAGAACCTGAG+GGG - chr1_1:73400159-73400178 None:intergenic 45.0%
CTGCAATCTTCAGAACCTGA+GGG - chr1_1:73400160-73400179 None:intergenic 45.0%
ACTGCAATCTTCAGAACCTG+AGG - chr1_1:73400161-73400180 None:intergenic 45.0%
!! GTTCTGAAGATTGCAGTGAG+CGG + chr1_1:73400164-73400183 Msa0042520:CDS 45.0%
! AGATACCTTGTTTGTTGGGG+AGG - chr1_1:73400218-73400237 None:intergenic 45.0%
CTTCAGAGTGAAGACGTCTT+TGG + chr1_1:73400261-73400280 Msa0042520:intron 45.0%
ACACTTGACACATCCGACAT+TGG + chr1_1:73400311-73400330 Msa0042520:intron 45.0%
ATTACTACCAGCGTCATGTC+TGG + chr1_1:73400398-73400417 Msa0042520:intron 45.0%
! GAGGTAGTGGTTCATGTTGT+TGG + chr1_1:73400443-73400462 Msa0042520:intron 45.0%
ATGCATATTTCCCTGGCAGT+TGG - chr1_1:73400471-73400490 None:intergenic 45.0%
GTGAGGAATGCATATTTCCC+TGG - chr1_1:73400478-73400497 None:intergenic 45.0%
!!! GACAGCGCTTATTTTGTCAC+AGG + chr1_1:73400650-73400669 Msa0042520:CDS 45.0%
ATTGAGGCACAGTCGAAGAA+TGG - chr1_1:73401189-73401208 None:intergenic 45.0%
GGACCAACTTAAAACTTCCG+TGG + chr1_1:73401454-73401473 Msa0042520:intron 45.0%
!!! CCTCCACGGAAGTTTTAAGT+TGG - chr1_1:73401460-73401479 None:intergenic 45.0%
CCAACTTAAAACTTCCGTGG+AGG + chr1_1:73401457-73401476 Msa0042520:CDS 45.0%
! AGGCCTCTGATTGCTATTGA+TGG + chr1_1:73401477-73401496 Msa0042520:CDS 45.0%
!!! TCGAAAGTTTTGAGGCAAGG+AGG - chr1_1:73401552-73401571 None:intergenic 45.0%
!!! GAGTCGAAAGTTTTGAGGCA+AGG - chr1_1:73401555-73401574 None:intergenic 45.0%
AACCAGGTGGTTGAATGTCA+TGG + chr1_1:73401699-73401718 Msa0042520:exon 45.0%
AGTCTTACACTTCCACTCCC+AGG + chr1_1:73399926-73399945 Msa0042520:five_prime_UTR 50.0%
!! GTGTTGTTTCCGCAACTGCA+AGG - chr1_1:73400063-73400082 None:intergenic 50.0%
TCTCTCCTCCCCAACAAACA+AGG + chr1_1:73400210-73400229 Msa0042520:CDS 50.0%
TGTTGTTGGAACCAACTGCC+AGG + chr1_1:73400457-73400476 Msa0042520:intron 50.0%
GTTGTTGGAACCAACTGCCA+GGG + chr1_1:73400458-73400477 Msa0042520:intron 50.0%
ATAGCAATCAGAGGCCTCCA+CGG - chr1_1:73401474-73401493 None:intergenic 50.0%
CAGGTGGTTGAATGTCATGG+CGG + chr1_1:73401702-73401721 Msa0042520:exon 50.0%
AGGTGGTTGAATGTCATGGC+GGG + chr1_1:73401703-73401722 Msa0042520:exon 50.0%
!! TTGAATGTCATGGCGGGTGA+GGG + chr1_1:73401709-73401728 Msa0042520:exon 50.0%
AGTCTTACACTTCCACTCCC+AGG + chr1_1:73399926-73399945 Msa0042520:five_prime_UTR 50.0%
!! GTGTTGTTTCCGCAACTGCA+AGG - chr1_1:73400063-73400082 None:intergenic 50.0%
TCTCTCCTCCCCAACAAACA+AGG + chr1_1:73400210-73400229 Msa0042520:CDS 50.0%
TGTTGTTGGAACCAACTGCC+AGG + chr1_1:73400457-73400476 Msa0042520:intron 50.0%
GTTGTTGGAACCAACTGCCA+GGG + chr1_1:73400458-73400477 Msa0042520:intron 50.0%
ATAGCAATCAGAGGCCTCCA+CGG - chr1_1:73401474-73401493 None:intergenic 50.0%
CAGGTGGTTGAATGTCATGG+CGG + chr1_1:73401702-73401721 Msa0042520:exon 50.0%
AGGTGGTTGAATGTCATGGC+GGG + chr1_1:73401703-73401722 Msa0042520:exon 50.0%
!! TTGAATGTCATGGCGGGTGA+GGG + chr1_1:73401709-73401728 Msa0042520:exon 50.0%
TGTTTCCGCAACTGCAAGGG+TGG - chr1_1:73400059-73400078 None:intergenic 55.0%
GATTGCAGTGAGCGGAGTGA+CGG + chr1_1:73400172-73400191 Msa0042520:CDS 55.0%
TACCAGCGTCATGTCTGGTC+TGG + chr1_1:73400403-73400422 Msa0042520:intron 55.0%
CGCCATGACATTCAACCACC+TGG - chr1_1:73401704-73401723 None:intergenic 55.0%
!! GTTGAATGTCATGGCGGGTG+AGG + chr1_1:73401708-73401727 Msa0042520:exon 55.0%
TGTTTCCGCAACTGCAAGGG+TGG - chr1_1:73400059-73400078 None:intergenic 55.0%
GATTGCAGTGAGCGGAGTGA+CGG + chr1_1:73400172-73400191 Msa0042520:CDS 55.0%
TACCAGCGTCATGTCTGGTC+TGG + chr1_1:73400403-73400422 Msa0042520:intron 55.0%
CGCCATGACATTCAACCACC+TGG - chr1_1:73401704-73401723 None:intergenic 55.0%
!! GTTGAATGTCATGGCGGGTG+AGG + chr1_1:73401708-73401727 Msa0042520:exon 55.0%
GGGGAGGAGAGAAAAGCCTC+AGG - chr1_1:73400202-73400221 None:intergenic 60.0%
CACCAGACCAGACATGACGC+TGG - chr1_1:73400408-73400427 None:intergenic 60.0%
GGGGAGGAGAGAAAAGCCTC+AGG - chr1_1:73400202-73400221 None:intergenic 60.0%
CACCAGACCAGACATGACGC+TGG - chr1_1:73400408-73400427 None:intergenic 60.0%
GGACGCCACCCTTGCAGTTG+CGG + chr1_1:73400051-73400070 Msa0042520:intron 65.0%
GGACGCCACCCTTGCAGTTG+CGG + chr1_1:73400051-73400070 Msa0042520:intron 65.0%
! GCGGAGTGACGGAGCTCCTG+AGG + chr1_1:73400183-73400202 Msa0042520:CDS 70.0%
! GCGGAGTGACGGAGCTCCTG+AGG + chr1_1:73400183-73400202 Msa0042520:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 73399819 73401944 73399819 ID=Msa0042520;Name=Msa0042520
chr1_1 mRNA 73399819 73401944 73399819 ID=Msa0042520-mRNA-1;Parent=Msa0042520;Name=Msa0042520-mRNA-1;_AED=0.15;_eAED=0.15;_QI=188|1|1|1|0.75|0.66|9|232|188
chr1_1 exon 73399819 73399848 73399819 ID=Msa0042520-mRNA-1:exon:24585;Parent=Msa0042520-mRNA-1
chr1_1 exon 73399872 73399947 73399872 ID=Msa0042520-mRNA-1:exon:24586;Parent=Msa0042520-mRNA-1
chr1_1 exon 73400052 73400231 73400052 ID=Msa0042520-mRNA-1:exon:24587;Parent=Msa0042520-mRNA-1
chr1_1 exon 73400562 73400671 73400562 ID=Msa0042520-mRNA-1:exon:24588;Parent=Msa0042520-mRNA-1
chr1_1 exon 73400839 73400904 73400839 ID=Msa0042520-mRNA-1:exon:24589;Parent=Msa0042520-mRNA-1
chr1_1 exon 73401148 73401230 73401148 ID=Msa0042520-mRNA-1:exon:24590;Parent=Msa0042520-mRNA-1
chr1_1 exon 73401326 73401372 73401326 ID=Msa0042520-mRNA-1:exon:24591;Parent=Msa0042520-mRNA-1
chr1_1 exon 73401455 73401533 73401455 ID=Msa0042520-mRNA-1:exon:24592;Parent=Msa0042520-mRNA-1
chr1_1 exon 73401629 73401944 73401629 ID=Msa0042520-mRNA-1:exon:24593;Parent=Msa0042520-mRNA-1
chr1_1 five_prime_UTR 73399819 73399848 73399819 ID=Msa0042520-mRNA-1:five_prime_utr;Parent=Msa0042520-mRNA-1
chr1_1 five_prime_UTR 73399872 73399947 73399872 ID=Msa0042520-mRNA-1:five_prime_utr;Parent=Msa0042520-mRNA-1
chr1_1 five_prime_UTR 73400052 73400133 73400052 ID=Msa0042520-mRNA-1:five_prime_utr;Parent=Msa0042520-mRNA-1
chr1_1 CDS 73400134 73400231 73400134 ID=Msa0042520-mRNA-1:cds;Parent=Msa0042520-mRNA-1
chr1_1 CDS 73400562 73400671 73400562 ID=Msa0042520-mRNA-1:cds;Parent=Msa0042520-mRNA-1
chr1_1 CDS 73400839 73400904 73400839 ID=Msa0042520-mRNA-1:cds;Parent=Msa0042520-mRNA-1
chr1_1 CDS 73401148 73401230 73401148 ID=Msa0042520-mRNA-1:cds;Parent=Msa0042520-mRNA-1
chr1_1 CDS 73401326 73401372 73401326 ID=Msa0042520-mRNA-1:cds;Parent=Msa0042520-mRNA-1
chr1_1 CDS 73401455 73401533 73401455 ID=Msa0042520-mRNA-1:cds;Parent=Msa0042520-mRNA-1
chr1_1 CDS 73401629 73401712 73401629 ID=Msa0042520-mRNA-1:cds;Parent=Msa0042520-mRNA-1
chr1_1 three_prime_UTR 73401713 73401944 73401713 ID=Msa0042520-mRNA-1:three_prime_utr;Parent=Msa0042520-mRNA-1
Gene Sequence

>Msa0042520

ATGGTAAAAGAAAGAAATGAAACCCCTCAGGTTCTGAAGATTGCAGTGAGCGGAGTGACGGAGCTCCTGAGGCTTTTCTCTCCTCCCCAACAAACAAGTGTTTTAAGCAGTAACGTTGAGAAACAGAATAATGACTCCCCAGTTTCAAGTATTGATGATGTTCTAATCATCATAAAGGATGATTATGACAGCGCTTATTTTGTCACAGGGAACTTCACTTCTTCAATTTACGCAGAAAATTGTATCTTTGAAGATCCAACTATTAAATTTAGTGGTAGGGACTTATATGCGCGCAACTTGAAATTACTCGTTCCATTCTTCGACTGTGCCTCAATTAGACTACTAAAGATCGAAAAGGATGTTGAATCTGGCACAAATTTTCTGCGTGCATCTTGGAAATTAAGGACCAACTTAAAACTTCCGTGGAGGCCTCTGATTGCTATTGATGGAAGCACTTCTTATGAATTGAATGAAGATTTCAAAATCATTCGGCATATTGAGAGTTGGAATGTTTCTGCACTTGAAGCAGTTTTGCAGATTTTCAAGTTTGAAAAACCAGGTGGTTGA

Protein sequence

>Msa0042520

MVKERNETPQVLKIAVSGVTELLRLFSPPQQTSVLSSNVEKQNNDSPVSSIDDVLIIIKDDYDSAYFVTGNFTSSIYAENCIFEDPTIKFSGRDLYARNLKLLVPFFDCASIRLLKIEKDVESGTNFLRASWKLRTNLKLPWRPLIAIDGSTSYELNEDFKIIRHIESWNVSALEAVLQIFKFEKPGG*