AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0881880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0881880 MtrunA17_Chr8g0384511 92.179 179 14 0 1 179 1 179 1.47e-112 336
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0881880 AT2G13440.1 88.350 103 12 0 77 179 73 175 7.72e-59 196

Find 223 sgRNAs with CRISPR-Local

Find 512 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCTCCAGGGCATTATTTC+TGG 0.116393 6_1:+30234677 Msa0881880:intron
ACTCAATGAAAGGTGAATTT+AGG 0.159488 6_1:+30234128 Msa0881880:three_prime_UTR
CTCTGTCTCTTTCCTCCTTT+TGG 0.163540 6_1:-30236926 None:intergenic
TTGAAAAGTGTCAAAATTTC+AGG 0.172651 6_1:+30235083 Msa0881880:three_prime_UTR
GTGCTACTCACCAGATAATT+AGG 0.181684 6_1:+30232889 Msa0881880:three_prime_UTR
TTCTTCTCGGGTCAGATAAA+TGG 0.202098 6_1:+30234454 Msa0881880:three_prime_UTR
TCTCTTATCCATTGTAATTT+AGG 0.203640 6_1:+30234177 Msa0881880:three_prime_UTR
ACTCCTTTGGGTCGTGAAAT+TGG 0.211572 6_1:+30234990 Msa0881880:three_prime_UTR
TGCTCTTGCTTCTGCACGTT+TGG 0.233878 6_1:+30229977 Msa0881880:CDS
GTTGAATTGAAGCAAGTTAA+TGG 0.239536 6_1:+30234062 Msa0881880:three_prime_UTR
AGCCTCATCCGATGATAATT+AGG 0.268827 6_1:-30229472 None:intergenic
GAAACTGATCGGCTGAAAAC+TGG 0.282682 6_1:+30232249 Msa0881880:three_prime_UTR
GAAACACACCTTATCTTCTA+TGG 0.287758 6_1:-30232979 None:intergenic
TATCTCATTAGGAGGGGATT+TGG 0.309038 6_1:+30235942 Msa0881880:intron
ACATCTGTTCTCTTTCAATA+TGG 0.316185 6_1:-30232842 None:intergenic
TTGCATGAAACGCCCACTTA+TGG 0.316964 6_1:+30232918 Msa0881880:three_prime_UTR
CGACAGAAATGCAGAGTAAA+TGG 0.317901 6_1:-30229629 None:intergenic
TGACATGGTTGAGATGAAAT+TGG 0.322317 6_1:-30229600 None:intergenic
AATTATTAATAAGTTTCATT+TGG 0.324922 6_1:-30233684 None:intergenic
CATGGTCACTGATATCTTAC+TGG 0.330595 6_1:+30232038 Msa0881880:exon
GCTCTTGCTTCTGCACGTTT+GGG 0.340555 6_1:+30229978 Msa0881880:CDS
GATGGAACAAGGATGTAATT+TGG 0.341694 6_1:+30234040 Msa0881880:three_prime_UTR
TGAACGAGCTGGGACTTTGC+AGG 0.343602 6_1:-30230514 None:intergenic
TGATAGCCGTCTCACTCCTT+TGG 0.343963 6_1:+30234977 Msa0881880:three_prime_UTR
GCAAGTTATCCCTAATTATC+TGG 0.347566 6_1:-30232899 None:intergenic
GCATAGTAATCCAGGTCTTC+AGG 0.348133 6_1:-30236346 None:intergenic
CTCAATGAAAGGTGAATTTA+GGG 0.349551 6_1:+30234129 Msa0881880:three_prime_UTR
CATTGACAGGATTGCGTGGC+AGG 0.350822 6_1:+30230028 Msa0881880:CDS
GCCTCATCCGATGATAATTA+GGG 0.354443 6_1:-30229471 None:intergenic
GATGAAATTGGGAGATGAAT+AGG 0.355107 6_1:-30229588 None:intergenic
TACGTGCTCAGACTGATAAA+AGG 0.360569 6_1:+30231426 Msa0881880:CDS
CTTCTTGATAAGCATGGTTT+TGG 0.360839 6_1:+30236054 Msa0881880:three_prime_UTR
AAGAAACCGCACATACAATA+TGG 0.372023 6_1:+30236030 Msa0881880:three_prime_UTR
TGACAAGAATTTATCAAGAA+TGG 0.376896 6_1:+30236077 Msa0881880:three_prime_UTR
CCTTTGCTGAGAACTTTGCC+TGG 0.379636 6_1:+30234325 Msa0881880:three_prime_UTR
ATTCGGACTGTAGATTTCTC+TGG 0.385158 6_1:+30232291 Msa0881880:three_prime_UTR
GATATAATATTTAAATACTA+TGG 0.385702 6_1:+30233739 Msa0881880:three_prime_UTR
CAGGTACATATATTTGTTGC+AGG 0.390247 6_1:-30233835 None:intergenic
GATAGCCGTCTCACTCCTTT+GGG 0.391537 6_1:+30234978 Msa0881880:three_prime_UTR
ATCTTATAGGGGTTCTCAAC+CGG 0.395502 6_1:+30234280 Msa0881880:intron
TTCTTACTCTCAACATTGAC+AGG 0.395986 6_1:+30230015 Msa0881880:CDS
AGGGCAGTATCTAGGTCCTT+TGG 0.399442 6_1:-30232955 None:intergenic
AAAAGCTACAAAATCATAGA+TGG 0.399707 6_1:+30237087 Msa0881880:three_prime_UTR
ATCATCGGATGAGGCTGCTT+TGG 0.400554 6_1:+30229479 Msa0881880:five_prime_UTR
AAACTTCAGGCTCCTCATCT+TGG 0.401204 6_1:-30236983 None:intergenic
TGCTACTCACCAGATAATTA+GGG 0.410486 6_1:+30232890 Msa0881880:three_prime_UTR
TTCAACCCATCCTCCATAAG+TGG 0.414051 6_1:-30232931 None:intergenic
TTCATAATTGGCAGGTCAGC+TGG 0.417540 6_1:+30232799 Msa0881880:intron
TCTCTTTCAATATGGACATC+TGG 0.418435 6_1:-30232834 None:intergenic
GTTTCAGTCAAAGAAACTTC+AGG 0.419087 6_1:-30236996 None:intergenic
TCATCAAATATTTCTTGAAC+CGG 0.420952 6_1:+30233598 Msa0881880:three_prime_UTR
GGAGAAAGTGGAGGCGGAAA+AGG 0.426066 6_1:-30229753 None:intergenic
GACTCGCCAGCTCTCCCTGC+GGG 0.426682 6_1:-30232183 None:intergenic
ATCTTGGGTATTAGCTTGAA+TGG 0.427478 6_1:-30236967 None:intergenic
AAGTTCTCATTGTCGTTCGC+TGG 0.428570 6_1:-30229556 None:intergenic
GAGTTGTTCGTCGGAAATTG+AGG 0.428770 6_1:-30229718 None:intergenic
AATGAGTAGTGCAGTGATAT+CGG 0.429661 6_1:-30236893 None:intergenic
TTGACTGAAACAGCTAGATC+TGG 0.429758 6_1:+30237008 Msa0881880:three_prime_UTR
AGGACCTGCGAGAGCCTTAC+CGG 0.431505 6_1:+30234795 Msa0881880:three_prime_UTR
AATCAACAAAATAATAGTTA+AGG 0.435965 6_1:+30233778 Msa0881880:three_prime_UTR
TAGCACTAGTAGTACGAGTT+AGG 0.437053 6_1:-30232872 None:intergenic
GCCTCTCGAATAGAAAGGTT+TGG 0.437247 6_1:-30232015 None:intergenic
GTATGTGCGGTTTCTTAAGA+AGG 0.439711 6_1:-30236023 None:intergenic
GCACAGATAAATATCAAAAT+CGG 0.441890 6_1:-30237053 None:intergenic
CGTGTACTCAATTCTTCAAA+AGG 0.443291 6_1:+30231386 Msa0881880:CDS
TCAGCAAAGCCAACTTCAAC+AGG 0.445803 6_1:+30236149 Msa0881880:three_prime_UTR
GTAAGGCTCTCGCAGGTCCT+TGG 0.446878 6_1:-30234792 None:intergenic
GACCTAGAGCATTGATGAGC+AGG 0.447046 6_1:-30234403 None:intergenic
CTGCCCTTCCATAGAAGATA+AGG 0.448701 6_1:+30232971 Msa0881880:three_prime_UTR
CTCCAGCCCGAGTGGACATT+CGG 0.448948 6_1:+30232274 Msa0881880:three_prime_UTR
CTCGCCTGACCAATGGTTTG+AGG 0.449157 6_1:-30236847 None:intergenic
AACTTCAGGCTCCTCATCTT+GGG 0.449927 6_1:-30236982 None:intergenic
ATACAAGGATTGTTCTTCTC+GGG 0.451776 6_1:+30234442 Msa0881880:three_prime_UTR
TCTATGCCCGCAGGGAGAGC+TGG 0.453999 6_1:+30232177 Msa0881880:three_prime_UTR
TGATAAAAGGGAATATGCTT+TGG 0.457766 6_1:+30231439 Msa0881880:CDS
AATACAAGGATTGTTCTTCT+CGG 0.458517 6_1:+30234441 Msa0881880:three_prime_UTR
TTTGATGAGACTCTTTGTCT+TGG 0.460619 6_1:-30233583 None:intergenic
TTTGCAGGCGCACCAACTGC+TGG 0.468066 6_1:-30230499 None:intergenic
GCATCACCGTGTCTTAAAAC+AGG 0.472066 6_1:-30233854 None:intergenic
CTGTAGTCTCTCAGGCAAAC+CGG 0.472181 6_1:-30234299 None:intergenic
AAAGGCAACTGTAGTCTCTC+AGG 0.474416 6_1:-30234307 None:intergenic
ACATAGGGAAAATTGCTGAT+AGG 0.475287 6_1:+30230560 Msa0881880:CDS
CTATGAAGAAGCTGCAGCAC+AGG 0.479361 6_1:+30234486 Msa0881880:three_prime_UTR
ATAGATTGACAGAGAGGAAA+AGG 0.480473 6_1:+30237110 Msa0881880:three_prime_UTR
AAATATGATGTGATTGTAGT+TGG 0.484063 6_1:+30229930 Msa0881880:CDS
GAGAGAGAGAGCAGTTACAT+AGG 0.486318 6_1:+30234746 Msa0881880:three_prime_UTR
AAATTGGATTGATAGATGAT+AGG 0.488648 6_1:+30235006 Msa0881880:three_prime_UTR
TAATCCAGGTCTTCAGGAAG+TGG 0.489976 6_1:-30236340 None:intergenic
AATTACATCCTTGTTCCATC+AGG 0.490352 6_1:-30234037 None:intergenic
TAGGTTAGGCCTCAAACCAT+TGG 0.494962 6_1:+30236838 Msa0881880:intron
ACTGAGAACTTACAGCAACT+TGG 0.495886 6_1:+30232222 Msa0881880:three_prime_UTR
GCTGAAATTACTGTTATGTC+TGG 0.496108 6_1:+30235967 Msa0881880:three_prime_UTR
GGAAGAACCTCTTCATCTCC+AGG 0.497914 6_1:-30232327 None:intergenic
AAATCCGAGCCTGCTTCTCC+TGG 0.498604 6_1:-30235043 None:intergenic
GTCCGAATGTCCACTCGGGC+TGG 0.501377 6_1:-30232276 None:intergenic
AGTAGTGCAGTGATATCGGC+AGG 0.501461 6_1:-30236889 None:intergenic
TCTATGGAAGGGCAGTATCT+AGG 0.501684 6_1:-30232963 None:intergenic
CTACAGTCCGAATGTCCACT+CGG 0.501786 6_1:-30232281 None:intergenic
CCTTTCTATTCGAGAGGCCA+TGG 0.501995 6_1:+30232020 Msa0881880:CDS
TTATCATTGCATAGTAATCC+AGG 0.502501 6_1:-30236354 None:intergenic
GAAATTGTACCAGGAGAAGC+AGG 0.506810 6_1:+30235034 Msa0881880:three_prime_UTR
TAGGCCTCAAACCATTGGTC+AGG 0.506876 6_1:+30236843 Msa0881880:three_prime_UTR
GGAGAAGCGACGGGAGAAAG+TGG 0.510743 6_1:-30229765 None:intergenic
AGAAGAGTGATAGATGAAGT+AGG 0.515825 6_1:-30229683 None:intergenic
GACATGGTTGAGATGAAATT+GGG 0.516065 6_1:-30229599 None:intergenic
ACGTGCTCAGACTGATAAAA+GGG 0.516334 6_1:+30231427 Msa0881880:CDS
CAAAAGGAGGAAAGAGACAG+AGG 0.517871 6_1:+30236927 Msa0881880:three_prime_UTR
ATAGTCATCAATCGCAAAAG+TGG 0.518762 6_1:+30233807 Msa0881880:three_prime_UTR
TAGCGTACCTTGTTAACATC+CGG 0.521224 6_1:-30234814 None:intergenic
GATTGATAGATGATAGGCGT+TGG 0.521496 6_1:+30235012 Msa0881880:three_prime_UTR
GCACCAACTGCTGGATTACA+AGG 0.522131 6_1:-30230490 None:intergenic
GTCCCAGCTCGTTCATGAAG+TGG 0.523005 6_1:+30230522 Msa0881880:CDS
TCAGGCACATCTCGACCCTC+CGG 0.523287 6_1:-30233617 None:intergenic
TACTCTGCTCGCCTGACCAA+TGG 0.524690 6_1:-30236854 None:intergenic
AAACGCCCACTTATGGAGGA+TGG 0.525613 6_1:+30232925 Msa0881880:three_prime_UTR
GTCCACTTCATGAACGAGCT+GGG 0.531202 6_1:-30230524 None:intergenic
ATGGTCACTGATATCTTACT+GGG 0.533339 6_1:+30232039 Msa0881880:exon
GGTCAGATAAATGGAACTAC+AGG 0.534465 6_1:+30234463 Msa0881880:three_prime_UTR
AACTATCGTACCTCGGGAGA+AGG 0.535280 6_1:-30229804 None:intergenic
TTGAAAACTGTTCAATGTTG+AGG 0.535553 6_1:+30234350 Msa0881880:three_prime_UTR
TTCAAATATATATTTCGACT+TGG 0.536512 6_1:-30234105 None:intergenic
TCATATTCCACAGCATATGC+AGG 0.537782 6_1:-30234373 None:intergenic
TGCTTTGGTTAACAAAGCAA+CGG 0.539307 6_1:+30229494 Msa0881880:five_prime_UTR
GACGCGCTTGGTGGTGACAT+AGG 0.540560 6_1:+30230544 Msa0881880:CDS
CGTCCACTTCATGAACGAGC+TGG 0.540963 6_1:-30230525 None:intergenic
GCACGTAAAGCACGAACTGC+AGG 0.542126 6_1:-30231410 None:intergenic
GGAAAAGGAACTGTTTGTAG+TGG 0.542332 6_1:+30237125 Msa0881880:three_prime_UTR
GTTCATGAAGTGGACGCGCT+TGG 0.542645 6_1:+30230532 Msa0881880:CDS
ACGGACATACCTGTTGAAGT+TGG 0.544160 6_1:-30236158 None:intergenic
CATGAAGTGGACGCGCTTGG+TGG 0.544294 6_1:+30230535 Msa0881880:CDS
TCAAATATTTCTTGAACCGG+AGG 0.549373 6_1:+30233601 Msa0881880:three_prime_UTR
ACGCGCTTGGTGGTGACATA+GGG 0.550505 6_1:+30230545 Msa0881880:CDS
TCATTGAGCTCGAAGCCAAA+AGG 0.552850 6_1:+30236911 Msa0881880:three_prime_UTR
ATGAGTGGTAAAATATGGGT+TGG 0.553295 6_1:+30232147 Msa0881880:three_prime_UTR
CCCCTAATTATCATCGGATG+AGG 0.555084 6_1:+30229470 Msa0881880:five_prime_UTR
ATTGCTCATACCTCAGATGT+AGG 0.558894 6_1:-30233901 None:intergenic
CGTCGGAAATTGAGGGAAGG+AGG 0.560938 6_1:-30229710 None:intergenic
TATGGACTTCTTGATAAGCA+TGG 0.561182 6_1:+30236048 Msa0881880:three_prime_UTR
GGTAGAACTTCTATGCCCGC+AGG 0.561240 6_1:+30232168 Msa0881880:three_prime_UTR
TAGCCTTGTAATCCAGCAGT+TGG 0.562033 6_1:+30230487 Msa0881880:intron
ATTGGTCAGGCGAGCAGAGT+AGG 0.562350 6_1:+30236856 Msa0881880:three_prime_UTR
TACCTTGTTAACATCCGGTA+AGG 0.563074 6_1:-30234809 None:intergenic
CTTATGACTAAGAAAATACA+AGG 0.563517 6_1:+30234427 Msa0881880:three_prime_UTR
AGTAAATGGCACCGTTGACA+TGG 0.564413 6_1:-30229615 None:intergenic
GAAATTGATATTAAGTACGA+AGG 0.565120 6_1:+30236114 Msa0881880:three_prime_UTR
AGGCGGAAAAGGAGATTCTC+CGG 0.565257 6_1:-30229742 None:intergenic
TATATTTGAAACTCAATGAA+AGG 0.565670 6_1:+30234118 Msa0881880:three_prime_UTR
TAAACCACTTCCTGAAGACC+TGG 0.566712 6_1:+30236336 Msa0881880:three_prime_UTR
ATCTCAACCTGGAGATGAAG+AGG 0.569238 6_1:+30232320 Msa0881880:three_prime_UTR
CACACCTTATCTTCTATGGA+AGG 0.572859 6_1:-30232975 None:intergenic
CCATGGCCTCTCGAATAGAA+AGG 0.572941 6_1:-30232020 None:intergenic
ATGCGACGGTGGAGAAGCGA+CGG 0.574027 6_1:-30229775 None:intergenic
GCGACGGGAGAAAGTGGAGG+CGG 0.574342 6_1:-30229759 None:intergenic
CCCGTGGTGAGAATGACTGA+TGG 0.577256 6_1:-30232117 None:intergenic
TTCTCATTGTCGTTCGCTGG+AGG 0.577869 6_1:-30229553 None:intergenic
CGTACCTCGGGAGAAGGAAG+CGG 0.579191 6_1:-30229798 None:intergenic
TGTACCAGGAGAAGCAGGCT+CGG 0.581258 6_1:+30235039 Msa0881880:three_prime_UTR
GTCAGGCGAGCAGAGTAGGT+GGG 0.582607 6_1:+30236860 Msa0881880:three_prime_UTR
TAGGCGTTGGAAATTGTACC+AGG 0.582824 6_1:+30235025 Msa0881880:three_prime_UTR
AGTTGTTCGTCGGAAATTGA+GGG 0.582943 6_1:-30229717 None:intergenic
TATTTAGCCGCTCAGAGCAT+CGG 0.583046 6_1:+30234931 Msa0881880:intron
CATGAAACGCCCACTTATGG+AGG 0.583933 6_1:+30232921 Msa0881880:three_prime_UTR
CTTACTTGCACATAGAGCTC+AGG 0.584501 6_1:-30233635 None:intergenic
ATCTGACTCAACCCACCCCA+AGG 0.587730 6_1:-30233719 None:intergenic
CCATCAGTCATTCTCACCAC+GGG 0.588790 6_1:+30232117 Msa0881880:three_prime_UTR
TCCAAACCTTTCTATTCGAG+AGG 0.588800 6_1:+30232014 Msa0881880:CDS
CTAACGCCCCTAATTATCAT+CGG 0.591068 6_1:+30229464 Msa0881880:five_prime_UTR
TTCTCCGGTGAGTTGTTCGT+CGG 0.592354 6_1:-30229727 None:intergenic
CCAGGCAAAGTTCTCAGCAA+AGG 0.594246 6_1:-30234325 None:intergenic
TGCGACGGTGGAGAAGCGAC+GGG 0.595054 6_1:-30229774 None:intergenic
TACCTGCTCATCAATGCTCT+AGG 0.597099 6_1:+30234401 Msa0881880:three_prime_UTR
TCAGGCGAGCAGAGTAGGTG+GGG 0.598429 6_1:+30236861 Msa0881880:three_prime_UTR
AAATATCAAAATCGGTAGAG+TGG 0.599923 6_1:-30237045 None:intergenic
TCTGGATTAGAATCTCAACC+TGG 0.600730 6_1:+30232309 Msa0881880:three_prime_UTR
ATTTCCGACGAACAACTCAC+CGG 0.601864 6_1:+30229723 Msa0881880:CDS
GGTCAGGCGAGCAGAGTAGG+TGG 0.602163 6_1:+30236859 Msa0881880:three_prime_UTR
GAAGGAAGCGGATGCGACGG+TGG 0.605231 6_1:-30229786 None:intergenic
AACTGGAACTCCAGCCCGAG+TGG 0.606428 6_1:+30232266 Msa0881880:three_prime_UTR
ACATCCGGTAAGGCTCTCGC+AGG 0.608313 6_1:-30234799 None:intergenic
AACGCCCACTTATGGAGGAT+GGG 0.608525 6_1:+30232926 Msa0881880:three_prime_UTR
GCTGGCGAGTCTGCTTCACA+TGG 0.608935 6_1:+30232195 Msa0881880:three_prime_UTR
GGAGAAGGAAGCGGATGCGA+CGG 0.612570 6_1:-30229789 None:intergenic
AGAAGTCCATATTGTATGTG+CGG 0.613059 6_1:-30236036 None:intergenic
GTCGGAAATTGAGGGAAGGA+GGG 0.614136 6_1:-30229709 None:intergenic
CAAATATTTCTTGAACCGGA+GGG 0.614402 6_1:+30233602 Msa0881880:three_prime_UTR
TTTCATCTCAACCATGTCAA+CGG 0.616822 6_1:+30229604 Msa0881880:exon
TCAACCCATCCTCCATAAGT+GGG 0.617248 6_1:-30232930 None:intergenic
GATGTGATTGTAGTTGGAGG+AGG 0.617335 6_1:+30229936 Msa0881880:CDS
TCGCTGGAGGCAATGTGAAG+CGG 0.617592 6_1:-30229540 None:intergenic
AGCCTTACCGGATGTTAACA+AGG 0.617788 6_1:+30234807 Msa0881880:three_prime_UTR
ACCACTCATAAAAGTTCCCG+TGG 0.623171 6_1:-30232133 None:intergenic
AAAAGGAGGAAAGAGACAGA+GGG 0.624433 6_1:+30236928 Msa0881880:three_prime_UTR
CAGTAAGATATCAGTGACCA+TGG 0.625171 6_1:-30232037 None:intergenic
TATGATGTGATTGTAGTTGG+AGG 0.629455 6_1:+30229933 Msa0881880:CDS
ACACCTTATCTTCTATGGAA+GGG 0.630410 6_1:-30232974 None:intergenic
AATCCAATTTCACGACCCAA+AGG 0.632364 6_1:-30234993 None:intergenic
TTGAGCTCGAAGCCAAAAGG+AGG 0.634708 6_1:+30236914 Msa0881880:three_prime_UTR
GGAGGATGGGTTGAAGCCAA+AGG 0.635736 6_1:+30232939 Msa0881880:three_prime_UTR
GAAGCAGGCTCGGATTTCTG+AGG 0.639153 6_1:+30235049 Msa0881880:three_prime_UTR
TAAATTACAATGGATAAGAG+AGG 0.639246 6_1:-30234175 None:intergenic
AGACTCGCCAGCTCTCCCTG+CGG 0.641108 6_1:-30232184 None:intergenic
GTTCGTCGGAAATTGAGGGA+AGG 0.642788 6_1:-30229713 None:intergenic
TACAGTCCGAATGTCCACTC+GGG 0.642947 6_1:-30232280 None:intergenic
GTAGAAGCATCCTACATCTG+AGG 0.646474 6_1:+30233891 Msa0881880:three_prime_UTR
GTAGTTGGAGGAGGACACGC+TGG 0.648135 6_1:+30229945 Msa0881880:CDS
TCAAGCTAATACCCAAGATG+AGG 0.648293 6_1:+30236971 Msa0881880:three_prime_UTR
CACGACCCAAAGGAGTGAGA+CGG 0.651338 6_1:-30234983 None:intergenic
TCTGACTCAACCCACCCCAA+GGG 0.652254 6_1:-30233718 None:intergenic
AACGCTGCTAGACATGCAGA+TGG 0.655157 6_1:+30234704 Msa0881880:three_prime_UTR
GAAGCGACGGGAGAAAGTGG+AGG 0.656002 6_1:-30229762 None:intergenic
TCCATCAGTCATTCTCACCA+CGG 0.656267 6_1:+30232116 Msa0881880:three_prime_UTR
AGATGGATAGATTGACAGAG+AGG 0.657489 6_1:+30237104 Msa0881880:three_prime_UTR
AATTGATGATCTAGTCACCA+AGG 0.684915 6_1:+30234775 Msa0881880:three_prime_UTR
GTTGAGGCCTGCATATGCTG+TGG 0.690407 6_1:+30234366 Msa0881880:three_prime_UTR
CCTCATCCGATGATAATTAG+GGG 0.692149 6_1:-30229470 None:intergenic
TCAACATTGACAGGATTGCG+TGG 0.693150 6_1:+30230024 Msa0881880:CDS
GTAGAACTTCTATGCCCGCA+GGG 0.696045 6_1:+30232169 Msa0881880:three_prime_UTR
GGGAAGAATGACAATGTGGA+AGG 0.698671 6_1:+30232060 Msa0881880:three_prime_UTR
GCATCCGCTTCCTTCTCCCG+AGG 0.705183 6_1:+30229794 Msa0881880:CDS
GTAGTGCAGTGATATCGGCA+GGG 0.712492 6_1:-30236888 None:intergenic
AAAGTAACCGATGCTCTGAG+CGG 0.714631 6_1:-30234938 None:intergenic
ACTGGGGAAGAATGACAATG+TGG 0.726022 6_1:+30232056 Msa0881880:three_prime_UTR
TGGTCACTGATATCTTACTG+GGG 0.750479 6_1:+30232040 Msa0881880:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTATTAATCATATTTTTA+TGG - chr6_1:30231642-30231661 None:intergenic 10.0%
!! TAATATGTATACTAATAATT+AGG + chr6_1:30231695-30231714 Msa0881880:intron 10.0%
!!! ATAAAAAGAAAATTGATAAT+GGG - chr6_1:30232471-30232490 None:intergenic 10.0%
!! AATTATTAATAAGTTTCATT+TGG - chr6_1:30233687-30233706 None:intergenic 10.0%
!! GATATAATATTTAAATACTA+TGG + chr6_1:30233739-30233758 Msa0881880:three_prime_UTR 10.0%
!!! AAATCAAATAAATTTTCTTT+TGG - chr6_1:30235894-30235913 None:intergenic 10.0%
!!! CGTTTTAATTAAATTGAATT+AGG + chr6_1:30230163-30230182 Msa0881880:intron 15.0%
!! ATAAAATACTTTATTCTGAT+TGG - chr6_1:30230236-30230255 None:intergenic 15.0%
!! TTAAAATACAGTTACAAAAT+TGG + chr6_1:30230268-30230287 Msa0881880:intron 15.0%
!!! CAATAATTTTATGAGTTTAA+TGG - chr6_1:30230358-30230377 None:intergenic 15.0%
!! CATTAAACTCATAAAATTAT+TGG + chr6_1:30230356-30230375 Msa0881880:intron 15.0%
!!! ATAGAAATGATTTAAAGTTA+AGG + chr6_1:30231018-30231037 Msa0881880:intron 15.0%
!!! TAGAAATGATTTAAAGTTAA+GGG + chr6_1:30231019-30231038 Msa0881880:intron 15.0%
!! AAAAAAAAAGTGAAATATCT+CGG + chr6_1:30231149-30231168 Msa0881880:intron 15.0%
!! TATTCGAATTAAAAACAAAT+TGG - chr6_1:30231200-30231219 None:intergenic 15.0%
!!! ATATAATATATTTTGAAGTG+TGG + chr6_1:30231300-30231319 Msa0881880:intron 15.0%
!! CATAAAAAGAAAATTGATAA+TGG - chr6_1:30232472-30232491 None:intergenic 15.0%
!!! TCATATTTTAAAAGTTAACT+TGG + chr6_1:30233018-30233037 Msa0881880:intron 15.0%
!!! TTAACTTGGTTTAATATTTA+GGG + chr6_1:30233032-30233051 Msa0881880:intron 15.0%
!! TTTAAAAACTTACTGAAATA+AGG - chr6_1:30233155-30233174 None:intergenic 15.0%
!!! AGTATTCTTAATTTTATAAG+GGG - chr6_1:30233450-30233469 None:intergenic 15.0%
!!! GAGTATTCTTAATTTTATAA+GGG - chr6_1:30233451-30233470 None:intergenic 15.0%
!!! TGAGTATTCTTAATTTTATA+AGG - chr6_1:30233452-30233471 None:intergenic 15.0%
!! AATCAACAAAATAATAGTTA+AGG + chr6_1:30233778-30233797 Msa0881880:three_prime_UTR 15.0%
!! AAAAAAAAAAAAAAGCAATC+AGG - chr6_1:30234550-30234569 None:intergenic 15.0%
!! TTACTACATTATTCTATAAT+AGG - chr6_1:30235303-30235322 None:intergenic 15.0%
!!! ATATGTTTTTTTTATCTAGT+AGG + chr6_1:30235867-30235886 Msa0881880:intron 15.0%
!!! TTTTTTTTTTGTTGCAGATT+TGG + chr6_1:30229887-30229906 Msa0881880:intron 20.0%
!! ACATTTCAAATTACAAAAAC+TGG - chr6_1:30230099-30230118 None:intergenic 20.0%
!! AAGATGTTATAATACTTCAA+GGG - chr6_1:30230824-30230843 None:intergenic 20.0%
!! AAAGATGTTATAATACTTCA+AGG - chr6_1:30230825-30230844 None:intergenic 20.0%
!!! TTATAACATCTTTTAGACAA+AGG + chr6_1:30230832-30230851 Msa0881880:intron 20.0%
!!! AAGCATAATTTTGAGTTATT+GGG - chr6_1:30230939-30230958 None:intergenic 20.0%
!!! AAAGCATAATTTTGAGTTAT+TGG - chr6_1:30230940-30230959 None:intergenic 20.0%
!!! TTTCAAGTAAGTTATTCTTA+AGG + chr6_1:30230957-30230976 Msa0881880:intron 20.0%
!!! AGAAATGATTTAAAGTTAAG+GGG + chr6_1:30231020-30231039 Msa0881880:intron 20.0%
!!! TAAAAACAAATTGGTTAGTT+TGG - chr6_1:30231191-30231210 None:intergenic 20.0%
!! TAATGAAAAATGTAGTAGAA+AGG + chr6_1:30231462-30231481 Msa0881880:intron 20.0%
!!! TTTTATGAGTGGTAAAATAT+GGG + chr6_1:30232143-30232162 Msa0881880:three_prime_UTR 20.0%
!! TTCCATTTAATCTTATATGT+AGG + chr6_1:30232346-30232365 Msa0881880:intron 20.0%
!! AACCTACATATAAGATTAAA+TGG - chr6_1:30232351-30232370 None:intergenic 20.0%
!! TATCATAAACACTATTTGAA+CGG - chr6_1:30232388-30232407 None:intergenic 20.0%
!! CAAATAGTGTTTATGATATT+TGG + chr6_1:30232390-30232409 Msa0881880:intron 20.0%
!!! TTATGATATTTGGCTTTAAA+TGG + chr6_1:30232400-30232419 Msa0881880:intron 20.0%
!! TTAGTTGTATCAAAATTACT+AGG - chr6_1:30232502-30232521 None:intergenic 20.0%
!!! GTAATTTTGATACAACTAAA+AGG + chr6_1:30232503-30232522 Msa0881880:intron 20.0%
!!! GTTAACTTGGTTTAATATTT+AGG + chr6_1:30233031-30233050 Msa0881880:intron 20.0%
!! TAACTTGGTTTAATATTTAG+GGG + chr6_1:30233033-30233052 Msa0881880:intron 20.0%
!! TTACAGTAAAGATAGAATTT+GGG - chr6_1:30233241-30233260 None:intergenic 20.0%
!!! GTATTCTTAATTTTATAAGG+GGG - chr6_1:30233449-30233468 None:intergenic 20.0%
!!! TAATTTTTCATTTTTTCCCT+TGG + chr6_1:30233702-30233721 Msa0881880:three_prime_UTR 20.0%
!!! AATTTTTCATTTTTTCCCTT+GGG + chr6_1:30233703-30233722 Msa0881880:three_prime_UTR 20.0%
!! AAAAAGGATATAACAAGATT+TGG - chr6_1:30233929-30233948 None:intergenic 20.0%
!! AAAATTTCTATCAGTTTATC+AGG - chr6_1:30233955-30233974 None:intergenic 20.0%
!! TTCAAATATATATTTCGACT+TGG - chr6_1:30234108-30234127 None:intergenic 20.0%
!!! TATATTTGAAACTCAATGAA+AGG + chr6_1:30234118-30234137 Msa0881880:three_prime_UTR 20.0%
!! TTATTCTTCTTCTATCTTAT+AGG + chr6_1:30234267-30234286 Msa0881880:intron 20.0%
!! TATTCTTCTTCTATCTTATA+GGG + chr6_1:30234268-30234287 Msa0881880:intron 20.0%
!! AAAACTTAGACATAATTAGT+TGG - chr6_1:30235134-30235153 None:intergenic 20.0%
!!! GTCTAAGTTTTTTCTTTAAA+AGG + chr6_1:30235143-30235162 Msa0881880:intron 20.0%
!! AATGAAAAAAGTTTATCCTT+TGG + chr6_1:30235167-30235186 Msa0881880:intron 20.0%
!! ATGAAAAAAGTTTATCCTTT+GGG + chr6_1:30235168-30235187 Msa0881880:intron 20.0%
!! AATATATGATCTATGTCTTA+AGG - chr6_1:30235695-30235714 None:intergenic 20.0%
!! CATATAACAATAATCTGTAT+TGG - chr6_1:30235719-30235738 None:intergenic 20.0%
!! ATTTATCAACATAGACAATT+TGG + chr6_1:30236423-30236442 Msa0881880:intron 20.0%
!! ACAATTTCATAACATAGATT+AGG - chr6_1:30236688-30236707 None:intergenic 20.0%
!!! TTGATTTCAACTTATTTTCA+AGG + chr6_1:30236790-30236809 Msa0881880:intron 20.0%
!!! TTGTAGCTTTTATATTTCAT+AGG - chr6_1:30237078-30237097 None:intergenic 20.0%
! AAATATGATGTGATTGTAGT+TGG + chr6_1:30229930-30229949 Msa0881880:CDS 25.0%
! AAACTGGATGTAAAATAAGA+TGG - chr6_1:30230083-30230102 None:intergenic 25.0%
!! AGTTACAAAATTGGCTTATT+TGG + chr6_1:30230277-30230296 Msa0881880:intron 25.0%
!! GGCAATATGATAAATTTTAC+TGG + chr6_1:30230298-30230317 Msa0881880:intron 25.0%
! ATGAGTTTAATGGAAATACA+CGG - chr6_1:30230348-30230367 None:intergenic 25.0%
!!! TCAGAAACTTCTCATTTTTT+AGG - chr6_1:30230449-30230468 None:intergenic 25.0%
!!! TTTGTTTTTCTCTTTCTGTT+AGG + chr6_1:30230793-30230812 Msa0881880:intron 25.0%
!!! TTGTTTTTCTCTTTCTGTTA+GGG + chr6_1:30230794-30230813 Msa0881880:intron 25.0%
!!! ATTTTGAGTTATTGGGAAAT+GGG - chr6_1:30230932-30230951 None:intergenic 25.0%
!!! AATTTTGAGTTATTGGGAAA+TGG - chr6_1:30230933-30230952 None:intergenic 25.0%
!! ATTTAAAGTTAAGGGGAAAA+TGG + chr6_1:30231027-30231046 Msa0881880:intron 25.0%
!! ATATTATGAGTGTTAGTCTA+GGG - chr6_1:30231681-30231700 None:intergenic 25.0%
!!! TTAGAGAGTTAGTCTTATAA+CGG - chr6_1:30231759-30231778 None:intergenic 25.0%
! TATAAGACTAACTCTCTAAT+AGG + chr6_1:30231760-30231779 Msa0881880:intron 25.0%
! TTGCTTTATAACTTGAAAGT+TGG + chr6_1:30231826-30231845 Msa0881880:intron 25.0%
! ATGTAGATTTGAAGATATCA+AGG - chr6_1:30231901-30231920 None:intergenic 25.0%
! TGATATCTTCAAATCTACAT+TGG + chr6_1:30231901-30231920 Msa0881880:intron 25.0%
! AAGTCAAAGCAAAATAAGAT+GGG - chr6_1:30231979-30231998 None:intergenic 25.0%
! AAAGTCAAAGCAAAATAAGA+TGG - chr6_1:30231980-30231999 None:intergenic 25.0%
!! CTTTTATGAGTGGTAAAATA+TGG + chr6_1:30232142-30232161 Msa0881880:three_prime_UTR 25.0%
!!! TTAACGCATCATAATTTGTT+GGG - chr6_1:30232664-30232683 None:intergenic 25.0%
!! TTTAACGCATCATAATTTGT+TGG - chr6_1:30232665-30232684 None:intergenic 25.0%
!!! TTTTTGATTTTGCTACAGTA+TGG + chr6_1:30232695-30232714 Msa0881880:intron 25.0%
!! AAAGCTTTTACTCTGTAAAA+CGG + chr6_1:30232753-30232772 Msa0881880:intron 25.0%
! AACTTGGTTTAATATTTAGG+GGG + chr6_1:30233034-30233053 Msa0881880:intron 25.0%
! CTTACAGTAAAGATAGAATT+TGG - chr6_1:30233242-30233261 None:intergenic 25.0%
! TCATCAAATATTTCTTGAAC+CGG + chr6_1:30233598-30233617 Msa0881880:three_prime_UTR 25.0%
!!! ATTTTTCATTTTTTCCCTTG+GGG + chr6_1:30233704-30233723 Msa0881880:three_prime_UTR 25.0%
! TCAGTTTATCAGGTTAAAAA+AGG - chr6_1:30233945-30233964 None:intergenic 25.0%
! TAAATTACAATGGATAAGAG+AGG - chr6_1:30234178-30234197 None:intergenic 25.0%
! TCTCTTATCCATTGTAATTT+AGG + chr6_1:30234177-30234196 Msa0881880:three_prime_UTR 25.0%
! TTATCCATTGTAATTTAGGT+GGG + chr6_1:30234181-30234200 Msa0881880:intron 25.0%
! ATTCTTCTTCTATCTTATAG+GGG + chr6_1:30234269-30234288 Msa0881880:intron 25.0%
! TAAGCTCTTATTATTTATGC+TGG + chr6_1:30234607-30234626 Msa0881880:intron 25.0%
! TATTATCGAGAAATGAGAAA+TGG - chr6_1:30234887-30234906 None:intergenic 25.0%
! AAATTGGATTGATAGATGAT+AGG + chr6_1:30235006-30235025 Msa0881880:three_prime_UTR 25.0%
!!! TTGAAAAGTGTCAAAATTTC+AGG + chr6_1:30235083-30235102 Msa0881880:three_prime_UTR 25.0%
! TGAAAAAAGTTTATCCTTTG+GGG + chr6_1:30235169-30235188 Msa0881880:intron 25.0%
! GATTATTGTTATATGCACAA+TGG + chr6_1:30235724-30235743 Msa0881880:intron 25.0%
! TGACAAGAATTTATCAAGAA+TGG + chr6_1:30236077-30236096 Msa0881880:three_prime_UTR 25.0%
! GAAATTGATATTAAGTACGA+AGG + chr6_1:30236114-30236133 Msa0881880:three_prime_UTR 25.0%
! GATAAATATGTTACATACCT+TGG - chr6_1:30236410-30236429 None:intergenic 25.0%
! GTTTAGTAATGACGAAAAAA+AGG + chr6_1:30236495-30236514 Msa0881880:intron 25.0%
!! AGATACTTTGACATTTCTTT+TGG - chr6_1:30236626-30236645 None:intergenic 25.0%
! TATTGAATGTGTATTCTACA+AGG + chr6_1:30236658-30236677 Msa0881880:intron 25.0%
! GCACAGATAAATATCAAAAT+CGG - chr6_1:30237056-30237075 None:intergenic 25.0%
! AAAAGCTACAAAATCATAGA+TGG + chr6_1:30237087-30237106 Msa0881880:three_prime_UTR 25.0%
! GATAGTTTCTTCATCTTTTC+CGG + chr6_1:30229820-30229839 Msa0881880:intron 30.0%
! GCAGATTTGGATTTTGAATT+CGG + chr6_1:30229900-30229919 Msa0881880:intron 30.0%
AAACAAGTAGAGGATGAATT+AGG - chr6_1:30230059-30230078 None:intergenic 30.0%
ATAAGATGGTAAACAAGTAG+AGG - chr6_1:30230069-30230088 None:intergenic 30.0%
! GAAGTATTTGTGTTTGCAAT+TGG + chr6_1:30230391-30230410 Msa0881880:intron 30.0%
AAAATTGCTGATAGGTAACA+TGG + chr6_1:30230568-30230587 Msa0881880:intron 30.0%
ACTGCATCAATATAATCTCA+GGG - chr6_1:30230636-30230655 None:intergenic 30.0%
AACTGCATCAATATAATCTC+AGG - chr6_1:30230637-30230656 None:intergenic 30.0%
TATACATGTCTCTCTATCAT+TGG + chr6_1:30230744-30230763 Msa0881880:intron 30.0%
ATACATGTCTCTCTATCATT+GGG + chr6_1:30230745-30230764 Msa0881880:intron 30.0%
! TGTTTTTCTCTTTCTGTTAG+GGG + chr6_1:30230795-30230814 Msa0881880:intron 30.0%
AATCTATCCTCATTCATTGT+AGG + chr6_1:30230980-30230999 Msa0881880:intron 30.0%
!!! ATATTTTGAAGTGTGGCTTT+TGG + chr6_1:30231307-30231326 Msa0881880:intron 30.0%
TGATAAAAGGGAATATGCTT+TGG + chr6_1:30231439-30231458 Msa0881880:CDS 30.0%
! TTTTGACCAGGATAAACTAA+TGG + chr6_1:30231611-30231630 Msa0881880:intron 30.0%
! CATATTATGAGTGTTAGTCT+AGG - chr6_1:30231682-30231701 None:intergenic 30.0%
!! TAGAGAGTTAGTCTTATAAC+GGG - chr6_1:30231758-30231777 None:intergenic 30.0%
AAGCAATATCTTGTCATGTA+CGG - chr6_1:30231812-30231831 None:intergenic 30.0%
!!! GAAGGTGTTTGTACATTTTT+TGG + chr6_1:30232078-30232097 Msa0881880:three_prime_UTR 30.0%
!!! AACTTGGTTTTGAAACTGAT+CGG + chr6_1:30232238-30232257 Msa0881880:three_prime_UTR 30.0%
! AATCGACTTAAGAAACATCT+TGG - chr6_1:30232590-30232609 None:intergenic 30.0%
!! TCATAATTTGTTGGGACTAT+CGG - chr6_1:30232656-30232675 None:intergenic 30.0%
CCAATTATGAAGATAAACTG+AGG - chr6_1:30232790-30232809 None:intergenic 30.0%
CCTCAGTTTATCTTCATAAT+TGG + chr6_1:30232787-30232806 Msa0881880:intron 30.0%
AGTTTATCTTCATAATTGGC+AGG + chr6_1:30232791-30232810 Msa0881880:intron 30.0%
ACATCTGTTCTCTTTCAATA+TGG - chr6_1:30232845-30232864 None:intergenic 30.0%
! GGCATTGGAAAAGTTTATTT+GGG + chr6_1:30233055-30233074 Msa0881880:intron 30.0%
TTATTGAAACTACTTGTGTG+AGG + chr6_1:30233180-30233199 Msa0881880:intron 30.0%
! GTAAAGATAGAATTTGGGAT+GGG - chr6_1:30233236-30233255 None:intergenic 30.0%
AGTAAAGATAGAATTTGGGA+TGG - chr6_1:30233237-30233256 None:intergenic 30.0%
TTCGACATACAATTAAGCAT+GGG - chr6_1:30233299-30233318 None:intergenic 30.0%
ATTCGACATACAATTAAGCA+TGG - chr6_1:30233300-30233319 None:intergenic 30.0%
! CAGATCATAACTTTTCTGAA+AGG - chr6_1:30233488-30233507 None:intergenic 30.0%
!!! TATGTACCTGTTTTAAGACA+CGG + chr6_1:30233848-30233867 Msa0881880:three_prime_UTR 30.0%
!!! AGTTTTATTTTCTTGCCTGA+TGG + chr6_1:30234022-30234041 Msa0881880:three_prime_UTR 30.0%
GTTGAATTGAAGCAAGTTAA+TGG + chr6_1:30234062-30234081 Msa0881880:three_prime_UTR 30.0%
ACTCAATGAAAGGTGAATTT+AGG + chr6_1:30234128-30234147 Msa0881880:three_prime_UTR 30.0%
CTCAATGAAAGGTGAATTTA+GGG + chr6_1:30234129-30234148 Msa0881880:three_prime_UTR 30.0%
CTTATCCATTGTAATTTAGG+TGG + chr6_1:30234180-30234199 Msa0881880:intron 30.0%
TATCCATTGTAATTTAGGTG+GGG + chr6_1:30234182-30234201 Msa0881880:intron 30.0%
TTGAAAACTGTTCAATGTTG+AGG + chr6_1:30234350-30234369 Msa0881880:three_prime_UTR 30.0%
CTCTTTCTGATGTTGTATAA+TGG + chr6_1:30234575-30234594 Msa0881880:intron 30.0%
!! AAAAGACTTGCTATATTAGC+AGG - chr6_1:30234636-30234655 None:intergenic 30.0%
! TTTTAGTCACGTACAATTGT+TGG + chr6_1:30235211-30235230 Msa0881880:intron 30.0%
ATGACAACTGAATCTAATCT+AGG - chr6_1:30235441-30235460 None:intergenic 30.0%
AGATTAGATTCAGTTGTCAT+TGG + chr6_1:30235441-30235460 Msa0881880:intron 30.0%
GATTAGATTCAGTTGTCATT+GGG + chr6_1:30235442-30235461 Msa0881880:intron 30.0%
GCTTCTAGATTATCTACAAT+CGG + chr6_1:30235528-30235547 Msa0881880:intron 30.0%
TTATATGCACAATGGAAACA+TGG + chr6_1:30235732-30235751 Msa0881880:intron 30.0%
CTCACCTAAATTATCTCATT+AGG + chr6_1:30235931-30235950 Msa0881880:intron 30.0%
ACCTAAATTATCTCATTAGG+AGG + chr6_1:30235934-30235953 Msa0881880:intron 30.0%
CCTAAATTATCTCATTAGGA+GGG + chr6_1:30235935-30235954 Msa0881880:intron 30.0%
CTAAATTATCTCATTAGGAG+GGG + chr6_1:30235936-30235955 Msa0881880:intron 30.0%
! AATGTTGAAGAGTTTTTCAC+AGG - chr6_1:30235997-30236016 None:intergenic 30.0%
TGTGAAAAACTCTTCAACAT+TGG + chr6_1:30235996-30236015 Msa0881880:three_prime_UTR 30.0%
AACAATACAGGATAGTGATA+TGG - chr6_1:30236223-30236242 None:intergenic 30.0%
CGCAAAAATTAGAACAATAC+AGG - chr6_1:30236235-30236254 None:intergenic 30.0%
! TCAAATTGTTGTTGTTGTGT+TGG + chr6_1:30236285-30236304 Msa0881880:intron 30.0%
TTATCATTGCATAGTAATCC+AGG - chr6_1:30236357-30236376 None:intergenic 30.0%
ACAATTTGGTCATTAGAGTT+AGG + chr6_1:30236437-30236456 Msa0881880:intron 30.0%
TACTAAACTTGTGGATCTAA+AGG - chr6_1:30236483-30236502 None:intergenic 30.0%
TTTCGTCATTACTAAACTTG+TGG - chr6_1:30236492-30236511 None:intergenic 30.0%
! CAATATTGACTAGAGATTGA+AGG - chr6_1:30236596-30236615 None:intergenic 30.0%
! ACTTTGACATTTCTTTTGGA+GGG - chr6_1:30236622-30236641 None:intergenic 30.0%
! TACTTTGACATTTCTTTTGG+AGG - chr6_1:30236623-30236642 None:intergenic 30.0%
! CAAGTTCTGTCAATGATTTT+AGG + chr6_1:30236819-30236838 Msa0881880:intron 30.0%
!!! TCTGTCAATGATTTTAGGTT+AGG + chr6_1:30236824-30236843 Msa0881880:intron 30.0%
AAATATCAAAATCGGTAGAG+TGG - chr6_1:30237048-30237067 None:intergenic 30.0%
!!! TAATTAGGGGCGTTAGTTTT+AGG - chr6_1:30229460-30229479 None:intergenic 35.0%
TGCTTTGGTTAACAAAGCAA+CGG + chr6_1:30229494-30229513 Msa0881880:five_prime_UTR 35.0%
GATGAAATTGGGAGATGAAT+AGG - chr6_1:30229591-30229610 None:intergenic 35.0%
GACATGGTTGAGATGAAATT+GGG - chr6_1:30229602-30229621 None:intergenic 35.0%
TGACATGGTTGAGATGAAAT+TGG - chr6_1:30229603-30229622 None:intergenic 35.0%
TTTCATCTCAACCATGTCAA+CGG + chr6_1:30229604-30229623 Msa0881880:exon 35.0%
!! AGAGCGTTTTGCGAAAATAT+CGG - chr6_1:30229661-30229680 None:intergenic 35.0%
AGAAGAGTGATAGATGAAGT+AGG - chr6_1:30229686-30229705 None:intergenic 35.0%
ATGAAGAAACTATCGTACCT+CGG - chr6_1:30229814-30229833 None:intergenic 35.0%
TATGATGTGATTGTAGTTGG+AGG + chr6_1:30229933-30229952 Msa0881880:CDS 35.0%
TTCTTACTCTCAACATTGAC+AGG + chr6_1:30230015-30230034 Msa0881880:CDS 35.0%
AAACGCAAACACATTCAACT+TGG - chr6_1:30230148-30230167 None:intergenic 35.0%
TGCAATTGGTTAAACACATG+AGG + chr6_1:30230405-30230424 Msa0881880:intron 35.0%
!!! TTTCTGACTGAGACTAGTTT+TGG + chr6_1:30230462-30230481 Msa0881880:intron 35.0%
ACATAGGGAAAATTGCTGAT+AGG + chr6_1:30230560-30230579 Msa0881880:CDS 35.0%
GACCATTAGATCACAATAAC+TGG + chr6_1:30230665-30230684 Msa0881880:intron 35.0%
TGCCAGTTATTGTGATCTAA+TGG - chr6_1:30230670-30230689 None:intergenic 35.0%
ATCACAATAACTGGCATGTT+TGG + chr6_1:30230674-30230693 Msa0881880:intron 35.0%
AAAATGGTCTAATGAGTTCC+TGG + chr6_1:30231043-30231062 Msa0881880:intron 35.0%
!! ATTGGTTAGTTTGGCTTGAA+CGG - chr6_1:30231182-30231201 None:intergenic 35.0%
TATCATTGCTATCGTCCATT+CGG + chr6_1:30231241-30231260 Msa0881880:intron 35.0%
TGAATCAAGATTGTACCGAA+TGG - chr6_1:30231259-30231278 None:intergenic 35.0%
CGTGTACTCAATTCTTCAAA+AGG + chr6_1:30231386-30231405 Msa0881880:CDS 35.0%
TCTGAAAGTAACAAAGGGAA+GGG - chr6_1:30231511-30231530 None:intergenic 35.0%
TGGAGTCTGAAAGTAACAAA+GGG - chr6_1:30231516-30231535 None:intergenic 35.0%
GCACAGCAAAAAATAGATAC+TGG - chr6_1:30231536-30231555 None:intergenic 35.0%
GATCTATAATAGTCACTCAG+TGG + chr6_1:30231571-30231590 Msa0881880:intron 35.0%
GTTTATCCTGGTCAAAATCT+TGG - chr6_1:30231608-30231627 None:intergenic 35.0%
ATGGTCACTGATATCTTACT+GGG + chr6_1:30232039-30232058 Msa0881880:exon 35.0%
ATGAGTGGTAAAATATGGGT+TGG + chr6_1:30232147-30232166 Msa0881880:three_prime_UTR 35.0%
!! TTGCAGAGTATTGTCAAACA+AGG - chr6_1:30232622-30232641 None:intergenic 35.0%
TTTACTCTGTAAAACGGAGA+TGG + chr6_1:30232759-30232778 Msa0881880:intron 35.0%
TCTCTTTCAATATGGACATC+TGG - chr6_1:30232837-30232856 None:intergenic 35.0%
TGCTACTCACCAGATAATTA+GGG + chr6_1:30232890-30232909 Msa0881880:three_prime_UTR 35.0%
GCAAGTTATCCCTAATTATC+TGG - chr6_1:30232902-30232921 None:intergenic 35.0%
ACACCTTATCTTCTATGGAA+GGG - chr6_1:30232977-30232996 None:intergenic 35.0%
GAAACACACCTTATCTTCTA+TGG - chr6_1:30232982-30233001 None:intergenic 35.0%
! GTTTAATATTTAGGGGGCAT+TGG + chr6_1:30233040-30233059 Msa0881880:intron 35.0%
!! GGGCATTGGAAAAGTTTATT+TGG + chr6_1:30233054-30233073 Msa0881880:intron 35.0%
TACAATTAAGCATGGGGAAA+AGG - chr6_1:30233292-30233311 None:intergenic 35.0%
TCGACATACAATTAAGCATG+GGG - chr6_1:30233298-30233317 None:intergenic 35.0%
TTTGATGAGACTCTTTGTCT+TGG - chr6_1:30233586-30233605 None:intergenic 35.0%
TCAAATATTTCTTGAACCGG+AGG + chr6_1:30233601-30233620 Msa0881880:three_prime_UTR 35.0%
CAAATATTTCTTGAACCGGA+GGG + chr6_1:30233602-30233621 Msa0881880:three_prime_UTR 35.0%
ATAGTCATCAATCGCAAAAG+TGG + chr6_1:30233807-30233826 Msa0881880:three_prime_UTR 35.0%
! CAGGTACATATATTTGTTGC+AGG - chr6_1:30233838-30233857 None:intergenic 35.0%
AATTACATCCTTGTTCCATC+AGG - chr6_1:30234040-30234059 None:intergenic 35.0%
GATGGAACAAGGATGTAATT+TGG + chr6_1:30234040-30234059 Msa0881880:three_prime_UTR 35.0%
ATCCATTGTAATTTAGGTGG+GGG + chr6_1:30234183-30234202 Msa0881880:intron 35.0%
TCCTTCTCAAGATAAAAAGG+AGG - chr6_1:30234230-30234249 None:intergenic 35.0%
CTCTCCTTCTCAAGATAAAA+AGG - chr6_1:30234233-30234252 None:intergenic 35.0%
! CTTTTTATCTTGAGAAGGAG+AGG + chr6_1:30234231-30234250 Msa0881880:intron 35.0%
!!! ATTGAACAGTTTTCAAGTCC+AGG - chr6_1:30234346-30234365 None:intergenic 35.0%
!!! TCTACTCTTTTTTATCCTCC+AGG + chr6_1:30234664-30234683 Msa0881880:intron 35.0%
!!! CTACTCTTTTTTATCCTCCA+GGG + chr6_1:30234665-30234684 Msa0881880:intron 35.0%
! AATTGATGATCTAGTCACCA+AGG + chr6_1:30234775-30234794 Msa0881880:three_prime_UTR 35.0%
GAGAAATGAGAAATGGAATG+AGG - chr6_1:30234880-30234899 None:intergenic 35.0%
CAATTGTACGTGACTAAAAG+AGG - chr6_1:30235210-30235229 None:intergenic 35.0%
TATAGGAAAAACAGGACTTG+GGG - chr6_1:30235263-30235282 None:intergenic 35.0%
CTATAGGAAAAACAGGACTT+GGG - chr6_1:30235264-30235283 None:intergenic 35.0%
ACTATAGGAAAAACAGGACT+TGG - chr6_1:30235265-30235284 None:intergenic 35.0%
CTACAGACTATAGGAAAAAC+AGG - chr6_1:30235271-30235290 None:intergenic 35.0%
TACTGTTAGCTACAGACTAT+AGG - chr6_1:30235280-30235299 None:intergenic 35.0%
! AATTTTGTAGTGCGAGAATG+TGG + chr6_1:30235338-30235357 Msa0881880:intron 35.0%
! ATTTTGTAGTGCGAGAATGT+GGG + chr6_1:30235339-30235358 Msa0881880:intron 35.0%
TAGATTATCTACAATCGGCT+TGG + chr6_1:30235533-30235552 Msa0881880:intron 35.0%
TGCATTGTGAATACATACAC+AGG + chr6_1:30235617-30235636 Msa0881880:intron 35.0%
ACATGGTACTTAGATTACAG+TGG + chr6_1:30235749-30235768 Msa0881880:intron 35.0%
TAGATTACAGTGGAAACTAC+TGG + chr6_1:30235759-30235778 Msa0881880:intron 35.0%
CTACTGGTATATTTGTCTAG+TGG + chr6_1:30235775-30235794 Msa0881880:intron 35.0%
ATTTCTACTTCACACTAGCA+TGG - chr6_1:30235806-30235825 None:intergenic 35.0%
ATTACTGTTGTCCATTCTCT+TGG + chr6_1:30235840-30235859 Msa0881880:intron 35.0%
AACATATGTTGCCAAGAGAA+TGG - chr6_1:30235854-30235873 None:intergenic 35.0%
CCCTCCTAATGAGATAATTT+AGG - chr6_1:30235938-30235957 None:intergenic 35.0%
GCTGAAATTACTGTTATGTC+TGG + chr6_1:30235967-30235986 Msa0881880:three_prime_UTR 35.0%
AAGAAACCGCACATACAATA+TGG + chr6_1:30236030-30236049 Msa0881880:three_prime_UTR 35.0%
AGAAGTCCATATTGTATGTG+CGG - chr6_1:30236039-30236058 None:intergenic 35.0%
TATGGACTTCTTGATAAGCA+TGG + chr6_1:30236048-30236067 Msa0881880:three_prime_UTR 35.0%
! CTTCTTGATAAGCATGGTTT+TGG + chr6_1:30236054-30236073 Msa0881880:three_prime_UTR 35.0%
TGTCCGTTATACATGTTAAC+TGG + chr6_1:30236174-30236193 Msa0881880:intron 35.0%
GCTCCAGTTAACATGTATAA+CGG - chr6_1:30236180-30236199 None:intergenic 35.0%
TGCGCATTATAGAATTTCAG+AGG + chr6_1:30236251-30236270 Msa0881880:intron 35.0%
TTGTTGAGTAACCATCTACA+TGG - chr6_1:30236314-30236333 None:intergenic 35.0%
TTTGGTCATTAGAGTTAGGT+TGG + chr6_1:30236441-30236460 Msa0881880:intron 35.0%
TTGGTCATTAGAGTTAGGTT+GGG + chr6_1:30236442-30236461 Msa0881880:intron 35.0%
! GATTGAAGGTTTGTTTGAGT+CGG - chr6_1:30236582-30236601 None:intergenic 35.0%
!! TATTTGCTGTACACAACGAT+GGG - chr6_1:30236752-30236771 None:intergenic 35.0%
AATGAGTAGTGCAGTGATAT+CGG - chr6_1:30236896-30236915 None:intergenic 35.0%
! ATCTTGGGTATTAGCTTGAA+TGG - chr6_1:30236970-30236989 None:intergenic 35.0%
GTTTCAGTCAAAGAAACTTC+AGG - chr6_1:30236999-30237018 None:intergenic 35.0%
ATAGATTGACAGAGAGGAAA+AGG + chr6_1:30237110-30237129 Msa0881880:three_prime_UTR 35.0%
CTAACGCCCCTAATTATCAT+CGG + chr6_1:30229464-30229483 Msa0881880:five_prime_UTR 40.0%
CCTCATCCGATGATAATTAG+GGG - chr6_1:30229473-30229492 None:intergenic 40.0%
GCCTCATCCGATGATAATTA+GGG - chr6_1:30229474-30229493 None:intergenic 40.0%
AGCCTCATCCGATGATAATT+AGG - chr6_1:30229475-30229494 None:intergenic 40.0%
CGACAGAAATGCAGAGTAAA+TGG - chr6_1:30229632-30229651 None:intergenic 40.0%
! GAGCGTTTTGCGAAAATATC+GGG - chr6_1:30229660-30229679 None:intergenic 40.0%
AGTTGTTCGTCGGAAATTGA+GGG - chr6_1:30229720-30229739 None:intergenic 40.0%
TGAAGAAACTATCGTACCTC+GGG - chr6_1:30229813-30229832 None:intergenic 40.0%
TCTCTCTATCATTGGGAGAT+GGG + chr6_1:30230752-30230771 Msa0881880:intron 40.0%
TCCTCATTCATTGTAGGTTG+TGG + chr6_1:30230986-30231005 Msa0881880:intron 40.0%
ACCACAACCTACAATGAATG+AGG - chr6_1:30230990-30231009 None:intergenic 40.0%
!! TTGGTTAGTTTGGCTTGAAC+GGG - chr6_1:30231181-30231200 None:intergenic 40.0%
!!! TTTTGAAGTGTGGCTTTTGG+TGG + chr6_1:30231310-30231329 Msa0881880:intron 40.0%
TACGTGCTCAGACTGATAAA+AGG + chr6_1:30231426-30231445 Msa0881880:CDS 40.0%
ACGTGCTCAGACTGATAAAA+GGG + chr6_1:30231427-30231446 Msa0881880:CDS 40.0%
CTGAAAGTAACAAAGGGAAG+GGG - chr6_1:30231510-30231529 None:intergenic 40.0%
GTCTGAAAGTAACAAAGGGA+AGG - chr6_1:30231512-30231531 None:intergenic 40.0%
CTGGAGTCTGAAAGTAACAA+AGG - chr6_1:30231517-30231536 None:intergenic 40.0%
CTATAATAGTCACTCAGTGG+TGG + chr6_1:30231574-30231593 Msa0881880:intron 40.0%
!! GTTGAACCAAGATTTTGACC+AGG + chr6_1:30231599-30231618 Msa0881880:intron 40.0%
! GTTCTGCCATTAGTTTATCC+TGG - chr6_1:30231620-30231639 None:intergenic 40.0%
!! AGTTAGTCTTATAACGGGTG+AGG - chr6_1:30231753-30231772 None:intergenic 40.0%
!! AAAGTTGGTAAGAAGCACCA+AGG + chr6_1:30231841-30231860 Msa0881880:intron 40.0%
TCCAAACCTTTCTATTCGAG+AGG + chr6_1:30232014-30232033 Msa0881880:CDS 40.0%
CAGTAAGATATCAGTGACCA+TGG - chr6_1:30232040-30232059 None:intergenic 40.0%
CATGGTCACTGATATCTTAC+TGG + chr6_1:30232038-30232057 Msa0881880:exon 40.0%
TGGTCACTGATATCTTACTG+GGG + chr6_1:30232040-30232059 Msa0881880:exon 40.0%
ACTGAGAACTTACAGCAACT+TGG + chr6_1:30232222-30232241 Msa0881880:three_prime_UTR 40.0%
ATTCGGACTGTAGATTTCTC+TGG + chr6_1:30232291-30232310 Msa0881880:three_prime_UTR 40.0%
! TCTGGATTAGAATCTCAACC+TGG + chr6_1:30232309-30232328 Msa0881880:three_prime_UTR 40.0%
GTCCAGGTGGTAAATTACTA+AGG - chr6_1:30232529-30232548 None:intergenic 40.0%
TAGTAATTTACCACCTGGAC+TGG + chr6_1:30232529-30232548 Msa0881880:intron 40.0%
TAGCACTAGTAGTACGAGTT+AGG - chr6_1:30232875-30232894 None:intergenic 40.0%
! GTGCTACTCACCAGATAATT+AGG + chr6_1:30232889-30232908 Msa0881880:three_prime_UTR 40.0%
CACACCTTATCTTCTATGGA+AGG - chr6_1:30232978-30232997 None:intergenic 40.0%
GAAATTCAAGAGGGGATAGA+GGG - chr6_1:30233211-30233230 None:intergenic 40.0%
! AAGATAGAATTTGGGATGGG+TGG - chr6_1:30233233-30233252 None:intergenic 40.0%
!!! TTTCATTTTTTCCCTTGGGG+TGG + chr6_1:30233707-30233726 Msa0881880:three_prime_UTR 40.0%
!!! TTCATTTTTTCCCTTGGGGT+GGG + chr6_1:30233708-30233727 Msa0881880:three_prime_UTR 40.0%
ATTGCTCATACCTCAGATGT+AGG - chr6_1:30233904-30233923 None:intergenic 40.0%
! CCTGCGTTGTTTCATAAAGT+TGG - chr6_1:30233986-30234005 None:intergenic 40.0%
CCAACTTTATGAAACAACGC+AGG + chr6_1:30233983-30234002 Msa0881880:intron 40.0%
TTATGAAACAACGCAGGAAG+AGG + chr6_1:30233989-30234008 Msa0881880:intron 40.0%
! TTTTCTTGCCTGATGGAACA+AGG + chr6_1:30234029-30234048 Msa0881880:three_prime_UTR 40.0%
TCCATTGTAATTTAGGTGGG+GGG + chr6_1:30234184-30234203 Msa0881880:intron 40.0%
! GCCTCCTTTTTATCTTGAGA+AGG + chr6_1:30234226-30234245 Msa0881880:intron 40.0%
ATCTTATAGGGGTTCTCAAC+CGG + chr6_1:30234280-30234299 Msa0881880:intron 40.0%
TCATATTCCACAGCATATGC+AGG - chr6_1:30234376-30234395 None:intergenic 40.0%
TTCTTCTCGGGTCAGATAAA+TGG + chr6_1:30234454-30234473 Msa0881880:three_prime_UTR 40.0%
GGTCAGATAAATGGAACTAC+AGG + chr6_1:30234463-30234482 Msa0881880:three_prime_UTR 40.0%
TGATACCAGAAATAATGCCC+TGG - chr6_1:30234685-30234704 None:intergenic 40.0%
TACCTTGTTAACATCCGGTA+AGG - chr6_1:30234812-30234831 None:intergenic 40.0%
TAGCGTACCTTGTTAACATC+CGG - chr6_1:30234817-30234836 None:intergenic 40.0%
AATCCAATTTCACGACCCAA+AGG - chr6_1:30234996-30235015 None:intergenic 40.0%
GATTGATAGATGATAGGCGT+TGG + chr6_1:30235012-30235031 Msa0881880:three_prime_UTR 40.0%
AATTAGTTGGCACACATGCA+TGG - chr6_1:30235121-30235140 None:intergenic 40.0%
TATCTCATTAGGAGGGGATT+TGG + chr6_1:30235942-30235961 Msa0881880:intron 40.0%
GTATGTGCGGTTTCTTAAGA+AGG - chr6_1:30236026-30236045 None:intergenic 40.0%
TGTGTTGGATTCCATGTAGA+TGG + chr6_1:30236300-30236319 Msa0881880:intron 40.0%
AGCTCGTGAAAAACTTTCCA+AGG + chr6_1:30236390-30236409 Msa0881880:three_prime_UTR 40.0%
!! CTATTTGCTGTACACAACGA+TGG - chr6_1:30236753-30236772 None:intergenic 40.0%
CATCGTTGTGTACAGCAAAT+AGG + chr6_1:30236751-30236770 Msa0881880:intron 40.0%
AAAAGGAGGAAAGAGACAGA+GGG + chr6_1:30236928-30236947 Msa0881880:three_prime_UTR 40.0%
TCAAGCTAATACCCAAGATG+AGG + chr6_1:30236971-30236990 Msa0881880:three_prime_UTR 40.0%
TTGACTGAAACAGCTAGATC+TGG + chr6_1:30237008-30237027 Msa0881880:three_prime_UTR 40.0%
AGATGGATAGATTGACAGAG+AGG + chr6_1:30237104-30237123 Msa0881880:three_prime_UTR 40.0%
GGAAAAGGAACTGTTTGTAG+TGG + chr6_1:30237125-30237144 Msa0881880:three_prime_UTR 40.0%
CCCCTAATTATCATCGGATG+AGG + chr6_1:30229470-30229489 Msa0881880:five_prime_UTR 45.0%
AAGTTCTCATTGTCGTTCGC+TGG - chr6_1:30229559-30229578 None:intergenic 45.0%
AGTAAATGGCACCGTTGACA+TGG - chr6_1:30229618-30229637 None:intergenic 45.0%
GAGTTGTTCGTCGGAAATTG+AGG - chr6_1:30229721-30229740 None:intergenic 45.0%
ATTTCCGACGAACAACTCAC+CGG + chr6_1:30229723-30229742 Msa0881880:CDS 45.0%
! TCTTCATCTTTTCCGGTGTC+AGG + chr6_1:30229827-30229846 Msa0881880:intron 45.0%
!! CTTCATCTTTTCCGGTGTCA+GGG + chr6_1:30229828-30229847 Msa0881880:intron 45.0%
GATGTGATTGTAGTTGGAGG+AGG + chr6_1:30229936-30229955 Msa0881880:CDS 45.0%
TCAACATTGACAGGATTGCG+TGG + chr6_1:30230024-30230043 Msa0881880:CDS 45.0%
!! TAGCCTTGTAATCCAGCAGT+TGG + chr6_1:30230487-30230506 Msa0881880:intron 45.0%
GTCTCTCTATCATTGGGAGA+TGG + chr6_1:30230751-30230770 Msa0881880:intron 45.0%
! CGATCATTTTGCAACTGTCC+AGG - chr6_1:30231064-30231083 None:intergenic 45.0%
CGCACATTCAAAGCTATACG+AGG + chr6_1:30231082-30231101 Msa0881880:intron 45.0%
!! AGTCTTATAACGGGTGAGGT+TGG - chr6_1:30231749-30231768 None:intergenic 45.0%
!! TAAGAAGCACCAAGGTGAGT+GGG + chr6_1:30231849-30231868 Msa0881880:intron 45.0%
TATATTCTCCCCACTCACCT+TGG - chr6_1:30231861-30231880 None:intergenic 45.0%
GCCTCTCGAATAGAAAGGTT+TGG - chr6_1:30232018-30232037 None:intergenic 45.0%
ACTGGGGAAGAATGACAATG+TGG + chr6_1:30232056-30232075 Msa0881880:three_prime_UTR 45.0%
GGGAAGAATGACAATGTGGA+AGG + chr6_1:30232060-30232079 Msa0881880:three_prime_UTR 45.0%
TCCATCAGTCATTCTCACCA+CGG + chr6_1:30232116-30232135 Msa0881880:three_prime_UTR 45.0%
! ACCACGGGAACTTTTATGAG+TGG + chr6_1:30232132-30232151 Msa0881880:three_prime_UTR 45.0%
ACCACTCATAAAAGTTCCCG+TGG - chr6_1:30232136-30232155 None:intergenic 45.0%
GAAACTGATCGGCTGAAAAC+TGG + chr6_1:30232249-30232268 Msa0881880:three_prime_UTR 45.0%
ATCTCAACCTGGAGATGAAG+AGG + chr6_1:30232320-30232339 Msa0881880:three_prime_UTR 45.0%
GGCCTTAGTAATTTACCACC+TGG + chr6_1:30232524-30232543 Msa0881880:intron 45.0%
TTCATAATTGGCAGGTCAGC+TGG + chr6_1:30232799-30232818 Msa0881880:intron 45.0%
TTGCATGAAACGCCCACTTA+TGG + chr6_1:30232918-30232937 Msa0881880:three_prime_UTR 45.0%
TCAACCCATCCTCCATAAGT+GGG - chr6_1:30232933-30232952 None:intergenic 45.0%
TTCAACCCATCCTCCATAAG+TGG - chr6_1:30232934-30232953 None:intergenic 45.0%
TCTATGGAAGGGCAGTATCT+AGG - chr6_1:30232966-30232985 None:intergenic 45.0%
CTGCCCTTCCATAGAAGATA+AGG + chr6_1:30232971-30232990 Msa0881880:three_prime_UTR 45.0%
GGAAATTCAAGAGGGGATAG+AGG - chr6_1:30233212-30233231 None:intergenic 45.0%
GATGGGTGGAAATTCAAGAG+GGG - chr6_1:30233219-30233238 None:intergenic 45.0%
GGATGGGTGGAAATTCAAGA+GGG - chr6_1:30233220-30233239 None:intergenic 45.0%
CTTACTTGCACATAGAGCTC+AGG - chr6_1:30233638-30233657 None:intergenic 45.0%
GCATCACCGTGTCTTAAAAC+AGG - chr6_1:30233857-30233876 None:intergenic 45.0%
!! GTAGAAGCATCCTACATCTG+AGG + chr6_1:30233891-30233910 Msa0881880:three_prime_UTR 45.0%
ACCCCCCACCTAAATTACAA+TGG - chr6_1:30234188-30234207 None:intergenic 45.0%
GTAATTTAGGTGGGGGGTTA+TGG + chr6_1:30234190-30234209 Msa0881880:intron 45.0%
AAAGGCAACTGTAGTCTCTC+AGG - chr6_1:30234310-30234329 None:intergenic 45.0%
TACCTGCTCATCAATGCTCT+AGG + chr6_1:30234401-30234420 Msa0881880:three_prime_UTR 45.0%
! ATCCTCCAGGGCATTATTTC+TGG + chr6_1:30234677-30234696 Msa0881880:intron 45.0%
TACCAGAAATAATGCCCTGG+AGG - chr6_1:30234682-30234701 None:intergenic 45.0%
GAGAGAGAGAGCAGTTACAT+AGG + chr6_1:30234746-30234765 Msa0881880:three_prime_UTR 45.0%
AGCCTTACCGGATGTTAACA+AGG + chr6_1:30234807-30234826 Msa0881880:three_prime_UTR 45.0%
TATTTAGCCGCTCAGAGCAT+CGG + chr6_1:30234931-30234950 Msa0881880:intron 45.0%
! AAAGTAACCGATGCTCTGAG+CGG - chr6_1:30234941-30234960 None:intergenic 45.0%
ACTCCTTTGGGTCGTGAAAT+TGG + chr6_1:30234990-30235009 Msa0881880:three_prime_UTR 45.0%
!! TAGGCGTTGGAAATTGTACC+AGG + chr6_1:30235025-30235044 Msa0881880:three_prime_UTR 45.0%
GAAATTGTACCAGGAGAAGC+AGG + chr6_1:30235034-30235053 Msa0881880:three_prime_UTR 45.0%
! ATCCTTTGGGGAAAGCAAGT+TGG + chr6_1:30235181-30235200 Msa0881880:intron 45.0%
! AACCAACTTGCTTTCCCCAA+AGG - chr6_1:30235186-30235205 None:intergenic 45.0%
!! TTGGCCTTGATTGAGACAAC+AGG + chr6_1:30235230-30235249 Msa0881880:intron 45.0%
TCAGCAAAGCCAACTTCAAC+AGG + chr6_1:30236149-30236168 Msa0881880:three_prime_UTR 45.0%
ACGGACATACCTGTTGAAGT+TGG - chr6_1:30236161-30236180 None:intergenic 45.0%
TAAACCACTTCCTGAAGACC+TGG + chr6_1:30236336-30236355 Msa0881880:three_prime_UTR 45.0%
TAATCCAGGTCTTCAGGAAG+TGG - chr6_1:30236343-30236362 None:intergenic 45.0%
GCATAGTAATCCAGGTCTTC+AGG - chr6_1:30236349-30236368 None:intergenic 45.0%
TAGGTTAGGCCTCAAACCAT+TGG + chr6_1:30236838-30236857 Msa0881880:intron 45.0%
TCATTGAGCTCGAAGCCAAA+AGG + chr6_1:30236911-30236930 Msa0881880:three_prime_UTR 45.0%
! CTCTGTCTCTTTCCTCCTTT+TGG - chr6_1:30236929-30236948 None:intergenic 45.0%
CAAAAGGAGGAAAGAGACAG+AGG + chr6_1:30236927-30236946 Msa0881880:three_prime_UTR 45.0%
AACTTCAGGCTCCTCATCTT+GGG - chr6_1:30236985-30237004 None:intergenic 45.0%
AAACTTCAGGCTCCTCATCT+TGG - chr6_1:30236986-30237005 None:intergenic 45.0%
ATCATCGGATGAGGCTGCTT+TGG + chr6_1:30229479-30229498 Msa0881880:five_prime_UTR 50.0%
TTCTCATTGTCGTTCGCTGG+AGG - chr6_1:30229556-30229575 None:intergenic 50.0%
GTCGGAAATTGAGGGAAGGA+GGG - chr6_1:30229712-30229731 None:intergenic 50.0%
GTTCGTCGGAAATTGAGGGA+AGG - chr6_1:30229716-30229735 None:intergenic 50.0%
TTCTCCGGTGAGTTGTTCGT+CGG - chr6_1:30229730-30229749 None:intergenic 50.0%
AGGCGGAAAAGGAGATTCTC+CGG - chr6_1:30229745-30229764 None:intergenic 50.0%
AACTATCGTACCTCGGGAGA+AGG - chr6_1:30229807-30229826 None:intergenic 50.0%
TGCTCTTGCTTCTGCACGTT+TGG + chr6_1:30229977-30229996 Msa0881880:CDS 50.0%
GCTCTTGCTTCTGCACGTTT+GGG + chr6_1:30229978-30229997 Msa0881880:CDS 50.0%
AACACATGAGGCATGATGCG+TGG + chr6_1:30230417-30230436 Msa0881880:intron 50.0%
GCACCAACTGCTGGATTACA+AGG - chr6_1:30230493-30230512 None:intergenic 50.0%
GTCCACTTCATGAACGAGCT+GGG - chr6_1:30230527-30230546 None:intergenic 50.0%
!! GTAAGAAGCACCAAGGTGAG+TGG + chr6_1:30231848-30231867 Msa0881880:intron 50.0%
!! AAGAAGCACCAAGGTGAGTG+GGG + chr6_1:30231850-30231869 Msa0881880:intron 50.0%
CCATGGCCTCTCGAATAGAA+AGG - chr6_1:30232023-30232042 None:intergenic 50.0%
CCTTTCTATTCGAGAGGCCA+TGG + chr6_1:30232020-30232039 Msa0881880:CDS 50.0%
CCATCAGTCATTCTCACCAC+GGG + chr6_1:30232117-30232136 Msa0881880:three_prime_UTR 50.0%
GTAGAACTTCTATGCCCGCA+GGG + chr6_1:30232169-30232188 Msa0881880:three_prime_UTR 50.0%
TACAGTCCGAATGTCCACTC+GGG - chr6_1:30232283-30232302 None:intergenic 50.0%
CTACAGTCCGAATGTCCACT+CGG - chr6_1:30232284-30232303 None:intergenic 50.0%
GGAAGAACCTCTTCATCTCC+AGG - chr6_1:30232330-30232349 None:intergenic 50.0%
ACAGAATTCTCCAGTCCAGG+TGG - chr6_1:30232542-30232561 None:intergenic 50.0%
TGGACAGAATTCTCCAGTCC+AGG - chr6_1:30232545-30232564 None:intergenic 50.0%
GAACTTGCACAGCTGATGGA+TGG - chr6_1:30232568-30232587 None:intergenic 50.0%
CTTGGAACTTGCACAGCTGA+TGG - chr6_1:30232572-30232591 None:intergenic 50.0%
CATGAAACGCCCACTTATGG+AGG + chr6_1:30232921-30232940 Msa0881880:three_prime_UTR 50.0%
AAACGCCCACTTATGGAGGA+TGG + chr6_1:30232925-30232944 Msa0881880:three_prime_UTR 50.0%
AACGCCCACTTATGGAGGAT+GGG + chr6_1:30232926-30232945 Msa0881880:three_prime_UTR 50.0%
AGGGCAGTATCTAGGTCCTT+TGG - chr6_1:30232958-30232977 None:intergenic 50.0%
GGGATGGGTGGAAATTCAAG+AGG - chr6_1:30233221-30233240 None:intergenic 50.0%
CTGTAGTCTCTCAGGCAAAC+CGG - chr6_1:30234302-30234321 None:intergenic 50.0%
CCAGGCAAAGTTCTCAGCAA+AGG - chr6_1:30234328-30234347 None:intergenic 50.0%
CCTTTGCTGAGAACTTTGCC+TGG + chr6_1:30234325-30234344 Msa0881880:three_prime_UTR 50.0%
!! GACCTAGAGCATTGATGAGC+AGG - chr6_1:30234406-30234425 None:intergenic 50.0%
CTATGAAGAAGCTGCAGCAC+AGG + chr6_1:30234486-30234505 Msa0881880:three_prime_UTR 50.0%
AACGCTGCTAGACATGCAGA+TGG + chr6_1:30234704-30234723 Msa0881880:three_prime_UTR 50.0%
! GCTCTGAGCGGCTAAATATC+AGG - chr6_1:30234929-30234948 None:intergenic 50.0%
TGATAGCCGTCTCACTCCTT+TGG + chr6_1:30234977-30234996 Msa0881880:three_prime_UTR 50.0%
GATAGCCGTCTCACTCCTTT+GGG + chr6_1:30234978-30234997 Msa0881880:three_prime_UTR 50.0%
AAAAACAGGACTTGGGGAGG+GGG - chr6_1:30235257-30235276 None:intergenic 50.0%
GAAAAACAGGACTTGGGGAG+GGG - chr6_1:30235258-30235277 None:intergenic 50.0%
GGAAAAACAGGACTTGGGGA+GGG - chr6_1:30235259-30235278 None:intergenic 50.0%
AGGAAAAACAGGACTTGGGG+AGG - chr6_1:30235260-30235279 None:intergenic 50.0%
GAGAATGTGGGAGCAAGTGA+TGG + chr6_1:30235351-30235370 Msa0881880:intron 50.0%
!! TCGGCTTGGCTTATGTCATG+TGG + chr6_1:30235547-30235566 Msa0881880:intron 50.0%
TGACGTCTCTCTGTCATGGT+CGG - chr6_1:30236727-30236746 None:intergenic 50.0%
GGATTGACGTCTCTCTGTCA+TGG - chr6_1:30236731-30236750 None:intergenic 50.0%
TAGGCCTCAAACCATTGGTC+AGG + chr6_1:30236843-30236862 Msa0881880:three_prime_UTR 50.0%
GTAGTGCAGTGATATCGGCA+GGG - chr6_1:30236891-30236910 None:intergenic 50.0%
AGTAGTGCAGTGATATCGGC+AGG - chr6_1:30236892-30236911 None:intergenic 50.0%
TTGAGCTCGAAGCCAAAAGG+AGG + chr6_1:30236914-30236933 Msa0881880:three_prime_UTR 50.0%
TCGCTGGAGGCAATGTGAAG+CGG - chr6_1:30229543-30229562 None:intergenic 55.0%
CGTCGGAAATTGAGGGAAGG+AGG - chr6_1:30229713-30229732 None:intergenic 55.0%
GGAGAAAGTGGAGGCGGAAA+AGG - chr6_1:30229756-30229775 None:intergenic 55.0%
CCGAATTGACACCCTGACAC+CGG - chr6_1:30229842-30229861 None:intergenic 55.0%
! CCGGTGTCAGGGTGTCAATT+CGG + chr6_1:30229839-30229858 Msa0881880:intron 55.0%
CATTGACAGGATTGCGTGGC+AGG + chr6_1:30230028-30230047 Msa0881880:CDS 55.0%
TGAACGAGCTGGGACTTTGC+AGG - chr6_1:30230517-30230536 None:intergenic 55.0%
GTCCCAGCTCGTTCATGAAG+TGG + chr6_1:30230522-30230541 Msa0881880:CDS 55.0%
CGTCCACTTCATGAACGAGC+TGG - chr6_1:30230528-30230547 None:intergenic 55.0%
GTTCATGAAGTGGACGCGCT+TGG + chr6_1:30230532-30230551 Msa0881880:CDS 55.0%
!! ACGCGCTTGGTGGTGACATA+GGG + chr6_1:30230545-30230564 Msa0881880:CDS 55.0%
GCACGTAAAGCACGAACTGC+AGG - chr6_1:30231413-30231432 None:intergenic 55.0%
CCCGTGGTGAGAATGACTGA+TGG - chr6_1:30232120-30232139 None:intergenic 55.0%
GGTAGAACTTCTATGCCCGC+AGG + chr6_1:30232168-30232187 Msa0881880:three_prime_UTR 55.0%
! CTTGCACAGCTGATGGATGG+TGG - chr6_1:30232565-30232584 None:intergenic 55.0%
!! GGAGGATGGGTTGAAGCCAA+AGG + chr6_1:30232939-30232958 Msa0881880:three_prime_UTR 55.0%
TCTGACTCAACCCACCCCAA+GGG - chr6_1:30233721-30233740 None:intergenic 55.0%
ATCTGACTCAACCCACCCCA+AGG - chr6_1:30233722-30233741 None:intergenic 55.0%
GTTGAGGCCTGCATATGCTG+TGG + chr6_1:30234366-30234385 Msa0881880:three_prime_UTR 55.0%
CACGACCCAAAGGAGTGAGA+CGG - chr6_1:30234986-30235005 None:intergenic 55.0%
TGTACCAGGAGAAGCAGGCT+CGG + chr6_1:30235039-30235058 Msa0881880:three_prime_UTR 55.0%
AAATCCGAGCCTGCTTCTCC+TGG - chr6_1:30235046-30235065 None:intergenic 55.0%
GAAGCAGGCTCGGATTTCTG+AGG + chr6_1:30235049-30235068 Msa0881880:three_prime_UTR 55.0%
GGGGCCTGTTGTCTCAATCA+AGG - chr6_1:30235237-30235256 None:intergenic 55.0%
AAAACAGGACTTGGGGAGGG+GGG - chr6_1:30235256-30235275 None:intergenic 55.0%
GTCTCTCTGTCATGGTCGGT+CGG - chr6_1:30236723-30236742 None:intergenic 55.0%
CTCGCCTGACCAATGGTTTG+AGG - chr6_1:30236850-30236869 None:intergenic 55.0%
TACTCTGCTCGCCTGACCAA+TGG - chr6_1:30236857-30236876 None:intergenic 55.0%
ATTGGTCAGGCGAGCAGAGT+AGG + chr6_1:30236856-30236875 Msa0881880:three_prime_UTR 55.0%
GAAGCGACGGGAGAAAGTGG+AGG - chr6_1:30229765-30229784 None:intergenic 60.0%
GGAGAAGCGACGGGAGAAAG+TGG - chr6_1:30229768-30229787 None:intergenic 60.0%
ATGCGACGGTGGAGAAGCGA+CGG - chr6_1:30229778-30229797 None:intergenic 60.0%
GGAGAAGGAAGCGGATGCGA+CGG - chr6_1:30229792-30229811 None:intergenic 60.0%
CGTACCTCGGGAGAAGGAAG+CGG - chr6_1:30229801-30229820 None:intergenic 60.0%
GTAGTTGGAGGAGGACACGC+TGG + chr6_1:30229945-30229964 Msa0881880:CDS 60.0%
TTTGCAGGCGCACCAACTGC+TGG - chr6_1:30230502-30230521 None:intergenic 60.0%
CATGAAGTGGACGCGCTTGG+TGG + chr6_1:30230535-30230554 Msa0881880:CDS 60.0%
!! GACGCGCTTGGTGGTGACAT+AGG + chr6_1:30230544-30230563 Msa0881880:CDS 60.0%
GCTGGCGAGTCTGCTTCACA+TGG + chr6_1:30232195-30232214 Msa0881880:three_prime_UTR 60.0%
AACTGGAACTCCAGCCCGAG+TGG + chr6_1:30232266-30232285 Msa0881880:three_prime_UTR 60.0%
CTCCAGCCCGAGTGGACATT+CGG + chr6_1:30232274-30232293 Msa0881880:three_prime_UTR 60.0%
TCAGGCACATCTCGACCCTC+CGG - chr6_1:30233620-30233639 None:intergenic 60.0%
GTAAGGCTCTCGCAGGTCCT+TGG - chr6_1:30234795-30234814 None:intergenic 60.0%
AGGACCTGCGAGAGCCTTAC+CGG + chr6_1:30234795-30234814 Msa0881880:three_prime_UTR 60.0%
ACATCCGGTAAGGCTCTCGC+AGG - chr6_1:30234802-30234821 None:intergenic 60.0%
GTCAGGCGAGCAGAGTAGGT+GGG + chr6_1:30236860-30236879 Msa0881880:three_prime_UTR 60.0%
TCAGGCGAGCAGAGTAGGTG+GGG + chr6_1:30236861-30236880 Msa0881880:three_prime_UTR 60.0%
GCGACGGGAGAAAGTGGAGG+CGG - chr6_1:30229762-30229781 None:intergenic 65.0%
TGCGACGGTGGAGAAGCGAC+GGG - chr6_1:30229777-30229796 None:intergenic 65.0%
GAAGGAAGCGGATGCGACGG+TGG - chr6_1:30229789-30229808 None:intergenic 65.0%
GCATCCGCTTCCTTCTCCCG+AGG + chr6_1:30229794-30229813 Msa0881880:CDS 65.0%
TCTATGCCCGCAGGGAGAGC+TGG + chr6_1:30232177-30232196 Msa0881880:three_prime_UTR 65.0%
AGACTCGCCAGCTCTCCCTG+CGG - chr6_1:30232187-30232206 None:intergenic 65.0%
GTCCGAATGTCCACTCGGGC+TGG - chr6_1:30232279-30232298 None:intergenic 65.0%
GGTCAGGCGAGCAGAGTAGG+TGG + chr6_1:30236859-30236878 Msa0881880:three_prime_UTR 65.0%
GACTCGCCAGCTCTCCCTGC+GGG - chr6_1:30232186-30232205 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 30229447 30237267 30229447 ID=Msa0881880;Name=Msa0881880
chr6_1 mRNA 30229447 30237267 30229447 ID=Msa0881880-mRNA-1;Parent=Msa0881880;Name=Msa0881880-mRNA-1;_AED=0.06;_eAED=0.06;_QI=170|0.92|0.92|1|0.76|0.85|14|2274|188
chr6_1 exon 30229447 30229815 30229447 ID=Msa0881880-mRNA-1:exon:7502;Parent=Msa0881880-mRNA-1
chr6_1 exon 30229904 30230049 30229904 ID=Msa0881880-mRNA-1:exon:7503;Parent=Msa0881880-mRNA-1
chr6_1 exon 30230490 30230581 30230490 ID=Msa0881880-mRNA-1:exon:7504;Parent=Msa0881880-mRNA-1
chr6_1 exon 30231370 30231460 30231370 ID=Msa0881880-mRNA-1:exon:7505;Parent=Msa0881880-mRNA-1
chr6_1 exon 30232011 30232341 30232011 ID=Msa0881880-mRNA-1:exon:7506;Parent=Msa0881880-mRNA-1
chr6_1 exon 30232813 30232992 30232813 ID=Msa0881880-mRNA-1:exon:7507;Parent=Msa0881880-mRNA-1
chr6_1 exon 30233572 30233912 30233572 ID=Msa0881880-mRNA-1:exon:7508;Parent=Msa0881880-mRNA-1
chr6_1 exon 30234005 30234198 30234005 ID=Msa0881880-mRNA-1:exon:7509;Parent=Msa0881880-mRNA-1
chr6_1 exon 30234289 30234507 30234289 ID=Msa0881880-mRNA-1:exon:7510;Parent=Msa0881880-mRNA-1
chr6_1 exon 30234686 30234828 30234686 ID=Msa0881880-mRNA-1:exon:7511;Parent=Msa0881880-mRNA-1
chr6_1 exon 30234938 30235104 30234938 ID=Msa0881880-mRNA-1:exon:7512;Parent=Msa0881880-mRNA-1
chr6_1 exon 30235953 30236170 30235953 ID=Msa0881880-mRNA-1:exon:7513;Parent=Msa0881880-mRNA-1
chr6_1 exon 30236319 30236411 30236319 ID=Msa0881880-mRNA-1:exon:7514;Parent=Msa0881880-mRNA-1
chr6_1 exon 30236841 30237267 30236841 ID=Msa0881880-mRNA-1:exon:7515;Parent=Msa0881880-mRNA-1
chr6_1 five_prime_UTR 30229447 30229616 30229447 ID=Msa0881880-mRNA-1:five_prime_utr;Parent=Msa0881880-mRNA-1
chr6_1 CDS 30229617 30229815 30229617 ID=Msa0881880-mRNA-1:cds;Parent=Msa0881880-mRNA-1
chr6_1 CDS 30229904 30230049 30229904 ID=Msa0881880-mRNA-1:cds;Parent=Msa0881880-mRNA-1
chr6_1 CDS 30230490 30230581 30230490 ID=Msa0881880-mRNA-1:cds;Parent=Msa0881880-mRNA-1
chr6_1 CDS 30231370 30231460 30231370 ID=Msa0881880-mRNA-1:cds;Parent=Msa0881880-mRNA-1
chr6_1 CDS 30232011 30232049 30232011 ID=Msa0881880-mRNA-1:cds;Parent=Msa0881880-mRNA-1
chr6_1 three_prime_UTR 30232050 30232341 30232050 ID=Msa0881880-mRNA-1:three_prime_utr;Parent=Msa0881880-mRNA-1
chr6_1 three_prime_UTR 30232813 30232992 30232813 ID=Msa0881880-mRNA-1:three_prime_utr;Parent=Msa0881880-mRNA-1
chr6_1 three_prime_UTR 30233572 30233912 30233572 ID=Msa0881880-mRNA-1:three_prime_utr;Parent=Msa0881880-mRNA-1
chr6_1 three_prime_UTR 30234005 30234198 30234005 ID=Msa0881880-mRNA-1:three_prime_utr;Parent=Msa0881880-mRNA-1
chr6_1 three_prime_UTR 30234289 30234507 30234289 ID=Msa0881880-mRNA-1:three_prime_utr;Parent=Msa0881880-mRNA-1
chr6_1 three_prime_UTR 30234686 30234828 30234686 ID=Msa0881880-mRNA-1:three_prime_utr;Parent=Msa0881880-mRNA-1
chr6_1 three_prime_UTR 30234938 30235104 30234938 ID=Msa0881880-mRNA-1:three_prime_utr;Parent=Msa0881880-mRNA-1
chr6_1 three_prime_UTR 30235953 30236170 30235953 ID=Msa0881880-mRNA-1:three_prime_utr;Parent=Msa0881880-mRNA-1
chr6_1 three_prime_UTR 30236319 30236411 30236319 ID=Msa0881880-mRNA-1:three_prime_utr;Parent=Msa0881880-mRNA-1
chr6_1 three_prime_UTR 30236841 30237267 30236841 ID=Msa0881880-mRNA-1:three_prime_utr;Parent=Msa0881880-mRNA-1
Gene Sequence

>Msa0881880

ATGTCAACGGTGCCATTTACTCTGCATTTCTGTCGCTTTACCCGATATTTTCGCAAAACGCTCTTTCCTACTTCATCTATCACTCTTCTCAACCCTCCTTCCCTCAATTTCCGACGAACAACTCACCGGAGAATCTCCTTTTCCGCCTCCACTTTCTCCCGTCGCTTCTCCACCGTCGCATCCGCTTCCTTCTCCCGAGATTTGGATTTTGAATTCGGAACAGAAAAATATGATGTGATTGTAGTTGGAGGAGGACACGCTGGTTGCGAAGCTGCTCTTGCTTCTGCACGTTTGGGTGCAAGAACTCTTCTTCTTACTCTCAACATTGACAGGATTGCGTGGCAGCCTTGTAATCCAGCAGTTGGTGCGCCTGCAAAGTCCCAGCTCGTTCATGAAGTGGACGCGCTTGGTGGTGACATAGGGAAAATTGCTGATAGATGCTACTTACAAAAGCGTGTACTCAATTCTTCAAAAGGTCCTGCAGTTCGTGCTTTACGTGCTCAGACTGATAAAAGGGAATATGCTTTGTACTCCAAACCTTTCTATTCGAGAGGCCATGGTCACTGA
Protein sequence

>Msa0881880

MSTVPFTLHFCRFTRYFRKTLFPTSSITLLNPPSLNFRRTTHRRISFSASTFSRRFSTVASASFSRDLDFEFGTEKYDVIVVGGGHAGCEAALASARLGARTLLLTLNIDRIAWQPCNPAVGAPAKSQLVHEVDALGGDIGKIADRCYLQKRVLNSSKGPAVRALRAQTDKREYALYSKPFYSRGHGH*