AlfalfaGEDB | Msa0649730

M. sativa cultivar zhongmu-4 / Msa0649730

KEGG: K08770
GO: -
PFAM: PF00240.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0649730	KAH0721915.1	100.000	533	0	0	1	533	121	653	0.0	1056

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	q. start	q. end	s. start	s. end	bit score
Msa0649730	sp\|P0CG71\|UBIQ1_CAEEL	95.685	533	23	1	533	1	533	1022
Msa0649730	sp\|P0CG71\|UBIQ1_CAEEL	95.685	533	23	1	533	77	609	1022
Msa0649730	sp\|P0CG71\|UBIQ1_CAEEL	95.685	533	23	1	533	153	685	1022
Msa0649730	sp\|P0CG71\|UBIQ1_CAEEL	95.685	533	23	1	533	229	761	1022
Msa0649730	sp\|P0CG71\|UBIQ1_CAEEL	95.865	532	22	1	532	305	836	1021

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0031180	Msa0649730	0.806182	9.312960e-50	-8.615850e-47
Msa0054820	Msa0649730	0.815293	9.956652e-52	-8.615850e-47
Msa0064110	Msa0649730	0.837145	6.178816e-57	-8.615850e-47
Msa0078480	Msa0649730	0.819112	1.378137e-52	-8.615850e-47
Msa0079390	Msa0649730	0.807175	5.747904e-50	-8.615850e-47
Msa0083090	Msa0649730	0.805670	1.193604e-49	-8.615850e-47
Msa0092440	Msa0649730	0.801477	8.840462e-49	-8.615850e-47
Msa0100160	Msa0649730	0.810532	1.099830e-50	-8.615850e-47
Msa0143850	Msa0649730	0.814972	1.173367e-51	-8.615850e-47
Msa0178510	Msa0649730	0.805526	1.279332e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0649730	MtrunA17_Chr8g0342711	100.000	533	0	0	1	533	4	536	1053
Msa0649730	MtrunA17_Chr4g0041701	99.812	533	1	0	1	533	1	533	1051
Msa0649730	MtrunA17_Chr4g0048591	99.625	533	2	0	1	533	4	536	1049
Msa0649730	MtrunA17_Chr4g0046831	96.998	533	0	1	1	533	80	596	1010
Msa0649730	MtrunA17_Chr4g0046831	96.623	533	2	1	1	533	4	520	1004
Msa0649730	MtrunA17_Chr4g0046801	99.782	458	1	0	76	533	3	460	904
Msa0649730	MtrunA17_Chr4g0046801	99.781	457	1	0	1	457	4	460	901
Msa0649730	MtrunA17_Chr4g0041641	100.000	457	0	0	77	533	5	461	902
Msa0649730	MtrunA17_Chr4g0041641	99.781	457	1	0	1	457	5	461	900
Msa0649730	MtrunA17_Chr8g0377821	100.000	380	0	0	1	380	9	388	751

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0649730	AT4G05320.2	100.000	457	0	0	77	533	1	457	903
Msa0649730	AT4G05320.2	99.781	457	1	0	1	457	1	457	900
Msa0649730	AT4G05320.4	100.000	457	0	0	77	533	1	457	903
Msa0649730	AT4G05320.4	99.781	457	1	0	1	457	1	457	900
Msa0649730	AT3G09790.2	74.864	553	114	6	1	532	3	551	763
Msa0649730	AT3G09790.2	74.047	551	118	6	1	530	79	625	747
Msa0649730	AT3G09790.1	74.864	553	114	6	1	532	3	551	763
Msa0649730	AT3G09790.1	74.047	551	118	6	1	530	79	625	747
Msa0649730	AT4G05320.1	100.000	381	0	0	153	533	1	381	754
Msa0649730	AT4G05320.1	99.738	381	1	0	1	381	1	381	751

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Find 142 sgRNAs with CRISPR-Local

Find 372 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAAGCCTCTGCTGATC+TGG	0.304914	4_3:-56379738	None:intergenic
AAAATAAGCCTCTGCTGATC+TGG	0.363325	4_3:-56378826	None:intergenic
AAAATTAGCCTCTGCTGGTC+TGG	0.379713	4_3:-56379054	None:intergenic
AAAATTAGTCTCTGTTGGTC+TGG	0.437526	4_3:-56379510	None:intergenic
AAAGACTATTACTTTGGAGG+TGG	0.523715	4_3:+56378744	Msa0649730:CDS
AAAGGAATCCACTCTTCATT+TGG	0.350557	4_3:+56378900	Msa0649730:CDS
AAATAAGCCTCTGCTGATCT+GGG	0.465164	4_3:-56379737	None:intergenic
AACACACTTAGAAGCCACCA+CGG	0.699059	4_3:-56379845	None:intergenic
AAGATAAGCCTCTGCTGATC+AGG	0.398269	4_3:-56378370	None:intergenic
AAGATAAGCCTCTGCTGATC+AGG	0.404708	4_3:-56378598	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCTTTGTGAAAACATTGAC+TGG	+	chr4_3:56378265-56378284	Msa0649730:CDS	30.0%
ATATTCGTTAAGACTTTGAC+CGG	+	chr4_3:56378493-56378512	Msa0649730:CDS	30.0%
GAAAGCTAAGATTCAAGATA+AGG	+	chr4_3:56378792-56378811	Msa0649730:CDS	30.0%
TACCGGAAAAACTATTACTT+TGG	+	chr4_3:56378966-56378985	Msa0649730:CDS	30.0%
TAATGTCAAGGCAAAAATTC+AGG	+	chr4_3:56379014-56379033	Msa0649730:CDS	30.0%
GCAAAAATTCAGGATAAAGA+GGG	+	chr4_3:56379024-56379043	Msa0649730:CDS	30.0%
TGGAAAAACTATTACTTTGG+AGG	+	chr4_3:56379197-56379216	Msa0649730:CDS	30.0%
GAAAGCTAAGATTCAAGATA+AGG	+	chr4_3:56378792-56378811	Msa0649730:CDS	30.0%
TAATGTGAAGGCAAAAATTC+AGG	+	chr4_3:56379470-56379489	Msa0649730:CDS	30.0%
GCAAAAATTCAGGATAAAGA+GGG	+	chr4_3:56379024-56379043	Msa0649730:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	56378259	56379860	56378259	ID=Msa0649730;Name=Msa0649730
chr4_3	mRNA	56378259	56379860	56378259	ID=Msa0649730-mRNA-1;Parent=Msa0649730;Name=Msa0649730-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|533
chr4_3	exon	56378259	56379860	56378259	ID=Msa0649730-mRNA-1:exon:14607;Parent=Msa0649730-mRNA-1
chr4_3	CDS	56378259	56379860	56378259	ID=Msa0649730-mRNA-1:cds;Parent=Msa0649730-mRNA-1

Gene Sequence

>Msa0649730

ATGCAAATCTTTGTGAAAACATTGACTGGCAAAACCATCACCCTTGAGGTGGAATCATCGGATACAATTGATAATGTCAAGGCCAAGATTCAGGACAAAGAGGGTATCCCTCCTGATCAGCAGAGGCTTATCTTTGCTGGGAAACAACTCGAGGATGGAAGAACCCTAGCTGATTATAACATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAATGCAGATATTCGTTAAGACTTTGACCGGAAAAACCATCACCCTAGAGGTTGAATCCTCGGATACCATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGTATCCCACCTGATCAGCAGAGGCTTATCTTTGCAGGGAAACAACTAGAAGATGGAAGGACCCTAGCTGATTATAACATCCAGAAGGAATCCACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAATGCAGATTTTTGTGAAGACTTTGACGGGAAAGACTATTACTTTGGAGGTGGAGAGTTCAGATACTATTGATAATGTGAAAGCTAAGATTCAAGATAAGGAGGGTATCCCTCCAGATCAGCAGAGGCTTATTTTTGCTGGCAAGCAACTTGAAGATGGAAGGACCCTTGCTGATTATAATATCCAAAAGGAATCCACTCTTCATTTGGTTTTGCGGCTTCGTGGTGGTATGCAAATTTTTGTGAAGACCCTTACCGGAAAAACTATTACTTTGGAGGTTGAGAGTTCCGATACTATTGATAATGTCAAGGCAAAAATTCAGGATAAAGAGGGCATTCCTCCAGACCAGCAGAGGCTAATTTTTGCCGGGAAGCAGTTGGAGGATGGTCGAACTCTGGCTGATTATAATATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGCGGAATGCAAATTTTTGTTAAGACTTTAACTGGAAAAACTATTACTTTGGAGGTTGAGAGTTCAGATACTATTGATAATGTGAAAGCTAAGATTCAAGATAAGGAGGGTATCCCTCCTGATCAACAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGAAGGACACTTGCTGATTATAACATCCAGAAGGAGTCCACTCTCCATTTGGTTTTGAGGCTTCGTGGGGGTATGCAGATTTTTGTTAAGACCCTTACTGGAAAGACCATAACTTTGGAGGTTGAGAGTTCTGATACAATTGATAATGTGAAGGCAAAAATTCAGGATAAAGAGGGCATTCCTCCAGACCAACAGAGACTAATTTTTGCCGGAAAGCAATTGGAGGATGGTCGTACTTTGGCTGATTATAATATCCAGAAGGAATCTACTTTGCATTTGGTTTTGAGGCTTCGTGGTGGCATGCAAATATTTGTGAAGACACTTACTGGGAAGACTATTACCTTGGAGGTGGAAAGCTCTGATACTATTGATAATGTGAAAGCAAAGATACAAGATAAGGAGGGTATTCCCCCAGATCAGCAGAGGCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGTACTCTGGCAGATTACAATATTCAGAAAGAATCTACCCTGCATCTTGTTCTTCGTCTCCGTGGTGGCTTCTAA

Protein sequence

>Msa0649730

MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF*