Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103190 | XP_024630954.1 | 97.656 | 512 | 12 | 0 | 1 | 512 | 1 | 512 | 0.0 | 1040 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103190 | sp|Q179T2|MUT7_AEDAE | 27.854 | 219 | 136 | 8 | 2 | 207 | 420 | 629 | 7.06e-15 | 81.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103190 | A0A396JEN7 | 97.656 | 512 | 12 | 0 | 1 | 512 | 1 | 512 | 0.0 | 1040 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003890 | Msa0103190 | 0.820015 | 8.574685e-53 | -8.615850e-47 |
| Msa0006110 | Msa0103190 | 0.815893 | 7.321644e-52 | -8.615850e-47 |
| Msa0012530 | Msa0103190 | 0.801770 | 7.696369e-49 | -8.615850e-47 |
| Msa0017510 | Msa0103190 | 0.815502 | 8.945346e-52 | -8.615850e-47 |
| Msa0045790 | Msa0103190 | 0.803741 | 3.015819e-49 | -8.615850e-47 |
| Msa0046160 | Msa0103190 | 0.805200 | 1.497434e-49 | -8.615850e-47 |
| Msa0078650 | Msa0103190 | 0.821258 | 4.443033e-53 | -8.615850e-47 |
| Msa0103190 | Msa0126370 | 0.821976 | 3.032204e-53 | -8.615850e-47 |
| Msa0103190 | Msa0157290 | 0.815527 | 8.830896e-52 | -8.615850e-47 |
| Msa0103190 | Msa0166870 | 0.808993 | 2.356579e-50 | -8.615850e-47 |
| Msa0103190 | Msa0195980 | 0.801698 | 7.963288e-49 | -8.615850e-47 |
| Msa0103190 | Msa0200260 | 0.819616 | 1.057590e-52 | -8.615850e-47 |
| Msa0103190 | Msa0220580 | 0.806843 | 6.754492e-50 | -8.615850e-47 |
| Msa0103190 | Msa0222620 | 0.801517 | 8.673914e-49 | -8.615850e-47 |
| Msa0103190 | Msa0243100 | 0.818361 | 2.040898e-52 | -8.615850e-47 |
| Msa0103190 | Msa0260780 | 0.816429 | 5.555378e-52 | -8.615850e-47 |
| Msa0103190 | Msa0264040 | 0.808336 | 3.256426e-50 | -8.615850e-47 |
| Msa0103190 | Msa0287650 | 0.809983 | 1.444925e-50 | -8.615850e-47 |
| Msa0103190 | Msa0309770 | 0.812916 | 3.331351e-51 | -8.615850e-47 |
| Msa0103190 | Msa0345970 | 0.812410 | 4.299250e-51 | -8.615850e-47 |
| Msa0103190 | Msa0357020 | 0.800520 | 1.387040e-48 | -8.615850e-47 |
| Msa0103190 | Msa0376350 | 0.806695 | 7.260939e-50 | -8.615850e-47 |
| Msa0103190 | Msa0417880 | 0.820083 | 8.273069e-53 | -8.615850e-47 |
| Msa0103190 | Msa0424790 | 0.806624 | 7.514239e-50 | -8.615850e-47 |
| Msa0103190 | Msa0428590 | 0.804654 | 1.947243e-49 | -8.615850e-47 |
| Msa0103190 | Msa0440750 | 0.824118 | 9.596376e-54 | -8.615850e-47 |
| Msa0103190 | Msa0516170 | 0.804381 | 2.219907e-49 | -8.615850e-47 |
| Msa0103190 | Msa0569200 | 0.810234 | 1.275681e-50 | -8.615850e-47 |
| Msa0103190 | Msa0569500 | 0.814774 | 1.298004e-51 | -8.615850e-47 |
| Msa0103190 | Msa0577500 | 0.801697 | 7.968074e-49 | -8.615850e-47 |
| Msa0103190 | Msa0655560 | 0.804347 | 2.256145e-49 | -8.615850e-47 |
| Msa0103190 | Msa0657970 | 0.810747 | 9.882448e-51 | -8.615850e-47 |
| Msa0103190 | Msa0672570 | 0.813781 | 2.151276e-51 | -8.615850e-47 |
| Msa0103190 | Msa0673460 | 0.820170 | 7.902656e-53 | -8.615850e-47 |
| Msa0103190 | Msa0681250 | 0.805353 | 1.390478e-49 | -8.615850e-47 |
| Msa0103190 | Msa0681270 | 0.828012 | 1.138586e-54 | -8.615850e-47 |
| Msa0103190 | Msa0682330 | 0.806699 | 7.247463e-50 | -8.615850e-47 |
| Msa0103190 | Msa0683510 | 0.800231 | 1.588361e-48 | -8.615850e-47 |
| Msa0103190 | Msa0697030 | 0.806924 | 6.493434e-50 | -8.615850e-47 |
| Msa0103190 | Msa0730430 | 0.823122 | 1.641236e-53 | -8.615850e-47 |
| Msa0103190 | Msa0740510 | 0.817420 | 3.328975e-52 | -8.615850e-47 |
| Msa0103190 | Msa0760130 | 0.807279 | 5.462696e-50 | -8.615850e-47 |
| Msa0103190 | Msa0767300 | 0.810522 | 1.105356e-50 | -8.615850e-47 |
| Msa0103190 | Msa0820770 | 0.811347 | 7.328221e-51 | -8.615850e-47 |
| Msa0103190 | Msa0825340 | 0.806995 | 6.275089e-50 | -8.615850e-47 |
| Msa0103190 | Msa0832340 | 0.825227 | 5.257200e-54 | -8.615850e-47 |
| Msa0103190 | Msa0844240 | 0.808205 | 3.472737e-50 | -8.615850e-47 |
| Msa0103190 | Msa0856920 | 0.800177 | 1.628694e-48 | -8.615850e-47 |
| Msa0103190 | Msa0861090 | 0.808838 | 2.544230e-50 | -8.615850e-47 |
| Msa0103190 | Msa0880140 | 0.811877 | 5.619215e-51 | -8.615850e-47 |
| Msa0103190 | Msa0880950 | 0.805653 | 1.203088e-49 | -8.615850e-47 |
| Msa0103190 | Msa0969520 | 0.802400 | 5.711127e-49 | -8.615850e-47 |
| Msa0103190 | Msa1004550 | 0.814770 | 1.300835e-51 | -8.615850e-47 |
| Msa0103190 | Msa1004600 | 0.813340 | 2.689460e-51 | -8.615850e-47 |
| Msa0103190 | Msa1004800 | 0.812217 | 4.736571e-51 | -8.615850e-47 |
| Msa0103190 | Msa1004840 | 0.829501 | 4.969240e-55 | -8.615850e-47 |
| Msa0103190 | Msa1041670 | 0.802827 | 4.663702e-49 | -8.615850e-47 |
| Msa0103190 | Msa1082500 | 0.802671 | 5.022318e-49 | -8.615850e-47 |
| Msa0103190 | Msa1115430 | 0.803005 | 4.284571e-49 | -8.615850e-47 |
| Msa0103190 | Msa1151900 | 0.807717 | 4.409242e-50 | -8.615850e-47 |
| Msa0103190 | Msa1151910 | 0.812223 | 4.724597e-51 | -8.615850e-47 |
| Msa0103190 | Msa1166560 | 0.801911 | 7.199846e-49 | -8.615850e-47 |
| Msa0103190 | Msa1189070 | 0.827974 | 1.162737e-54 | -8.615850e-47 |
| Msa0103190 | Msa1199570 | 0.832499 | 9.132002e-56 | -8.615850e-47 |
| Msa0103190 | Msa1209460 | 0.816188 | 6.289482e-52 | -8.615850e-47 |
| Msa0103190 | Msa1276660 | 0.801765 | 7.714781e-49 | -8.615850e-47 |
| Msa0103190 | Msa1284550 | 0.817522 | 3.157274e-52 | -8.615850e-47 |
| Msa0103190 | Msa1302830 | 0.820332 | 7.253295e-53 | -8.615850e-47 |
| Msa0103190 | Msa1328710 | 0.833640 | 4.749587e-56 | -8.615850e-47 |
| Msa0103190 | Msa1333480 | 0.811653 | 6.287741e-51 | -8.615850e-47 |
| Msa0103190 | Msa1353980 | 0.804594 | 2.004270e-49 | -8.615850e-47 |
| Msa0103190 | Msa1369120 | 0.818643 | 1.760851e-52 | -8.615850e-47 |
| Msa0103190 | Msa1409700 | 0.806075 | 9.808940e-50 | -8.615850e-47 |
| Msa0103190 | Msa1436480 | 0.814947 | 1.188562e-51 | -8.615850e-47 |
| Msa0103190 | Msa1452240 | 0.832021 | 1.198915e-55 | -8.615850e-47 |
| Msa0103190 | Msa1460020 | 0.810105 | 1.359691e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103190 | MtrunA17_Chr1g0146721 | 97.656 | 512 | 12 | 0 | 1 | 512 | 1 | 512 | 0.0 | 1040 |
| Msa0103190 | MtrunA17_Chr1g0192551 | 34.831 | 178 | 94 | 5 | 26 | 200 | 366 | 524 | 1.23e-17 | 85.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103190 | AT5G24340.1 | 61.840 | 511 | 178 | 5 | 9 | 512 | 5 | 505 | 0.0 | 618 |
| Msa0103190 | AT5G24340.2 | 61.179 | 492 | 174 | 5 | 9 | 493 | 5 | 486 | 0.0 | 582 |
| Msa0103190 | AT1G56310.2 | 34.426 | 183 | 98 | 5 | 21 | 200 | 367 | 530 | 1.86e-19 | 92.0 |
| Msa0103190 | AT1G56310.1 | 34.426 | 183 | 98 | 5 | 21 | 200 | 367 | 530 | 1.86e-19 | 92.0 |
Find 143 sgRNAs with CRISPR-Local
Find 379 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGAATATTTAAGGTCTTTC+AGG | 0.172278 | 1_3:-10314049 | Msa0103190:CDS |
| TTGCTTGCTCGGAATATTTA+AGG | 0.172649 | 1_3:-10314058 | Msa0103190:CDS |
| TGGACTGTCACCAACTTTAT+TGG | 0.183295 | 1_3:-10311522 | Msa0103190:CDS |
| TGGACAGGTTGAACCGTATT+TGG | 0.193079 | 1_3:-10316075 | Msa0103190:intron |
| AGTGGATTTCTAGAGGTTTC+TGG | 0.222774 | 1_3:+10317328 | None:intergenic |
| CCCTCCCTCTCTCTTCAATA+TGG | 0.225431 | 1_3:-10317116 | Msa0103190:CDS |
| TTCTTGTTAAATAAGCAATT+TGG | 0.256042 | 1_3:+10311565 | None:intergenic |
| AAGAAGCAGTTGCCAATTAA+TGG | 0.266519 | 1_3:-10312880 | Msa0103190:CDS |
| GTTGGGGATTTCACTATCTA+AGG | 0.266528 | 1_3:-10315958 | Msa0103190:intron |
| ACTCAGCCATTGTTAGCTTT+TGG | 0.273099 | 1_3:-10310673 | Msa0103190:three_prime_UTR |
| TCTCTGGGAAGCCCATTAAT+TGG | 0.275370 | 1_3:+10312868 | None:intergenic |
| TTGGGTTGAAAGAGCTATTC+AGG | 0.279184 | 1_3:-10313146 | Msa0103190:CDS |
| TTAACAAGAATTTAGAGTTT+TGG | 0.282841 | 1_3:-10311552 | Msa0103190:CDS |
| TTCTTGTTCTGATGTTGTTC+AGG | 0.290742 | 1_3:-10313055 | Msa0103190:CDS |
| CGAACTTCTGTACTGCATTA+TGG | 0.303283 | 1_3:+10311177 | None:intergenic |
| CGCCGAGTTGACACGCGATT+TGG | 0.332673 | 1_3:+10317172 | None:intergenic |
| AATTGGGGAAAGATATTAAC+TGG | 0.343664 | 1_3:+10310611 | None:intergenic |
| ACTTCGAATGGATAATCTAT+TGG | 0.346561 | 1_3:+10313176 | None:intergenic |
| TTCAAAGACAACGTATTTAG+TGG | 0.347954 | 1_3:+10310899 | None:intergenic |
| GGACTGTCACCAACTTTATT+GGG | 0.348017 | 1_3:-10311521 | Msa0103190:CDS |
| GAAGAGATGAATGAAGGTTT+TGG | 0.355240 | 1_3:+10317374 | None:intergenic |
| CGACGAGGGAGGTTTGAGTT+AGG | 0.362587 | 1_3:+10317259 | None:intergenic |
| TCCATTCGAAGTGCAAATCT+TGG | 0.365006 | 1_3:-10313165 | Msa0103190:CDS |
| GATCTTCGTTAATATTTAGT+TGG | 0.370178 | 1_3:+10311686 | None:intergenic |
| TCTGTACTGCATTATGGTAC+TGG | 0.375544 | 1_3:+10311183 | None:intergenic |
| ACCATTTGTGGAGAATTGTT+GGG | 0.393604 | 1_3:-10315975 | Msa0103190:CDS |
| AGAAGCAGTTGCCAATTAAT+GGG | 0.394347 | 1_3:-10312879 | Msa0103190:CDS |
| AGACGGTGGGGAATGAGTTT+TGG | 0.396979 | 1_3:+10317202 | None:intergenic |
| AATTCAAACCTTATCGAAAC+CGG | 0.401870 | 1_3:+10316984 | None:intergenic |
| CAAAACATTTACGTTGTGTT+GGG | 0.402928 | 1_3:-10312415 | Msa0103190:CDS |
| CACCTTGGGATCCAATAGTT+GGG | 0.419800 | 1_3:-10312807 | Msa0103190:CDS |
| TTTGAGTTAGGGAACGAGTT+AGG | 0.421933 | 1_3:+10317271 | None:intergenic |
| AAGAGAGAGGGAGGGAGATA+AGG | 0.425681 | 1_3:+10317124 | None:intergenic |
| TTGTCAGAAAACATGGTGAT+AGG | 0.426512 | 1_3:-10312954 | Msa0103190:CDS |
| CAGGCAACGGTTACCGAAGA+AGG | 0.426909 | 1_3:-10314030 | Msa0103190:intron |
| AAGAGTTTGTCAACCATTTG+TGG | 0.436956 | 1_3:-10315987 | Msa0103190:CDS |
| ATACTCTATTACCTTGGTTC+AGG | 0.437955 | 1_3:+10312362 | None:intergenic |
| GAAGTGATGTATACCACATC+AGG | 0.441192 | 1_3:-10310812 | Msa0103190:three_prime_UTR |
| CCATAGCTGCATATGTCATC+TGG | 0.441623 | 1_3:+10314088 | None:intergenic |
| GGTTCAGGCTTCTTTGAAGA+AGG | 0.443658 | 1_3:+10312377 | None:intergenic |
| AGGAGCTCCAATGTAGTGAT+TGG | 0.446279 | 1_3:-10314134 | Msa0103190:CDS |
| CCTCCCTCTCTCTTCAATAT+GGG | 0.447072 | 1_3:-10317115 | Msa0103190:CDS |
| ATTTCTAGAGGTTTCTGGTT+CGG | 0.449204 | 1_3:+10317333 | None:intergenic |
| CCCCAACAATTCTCCACAAA+TGG | 0.450171 | 1_3:+10315974 | None:intergenic |
| GTCATCTGGTCTTCTGTAAG+AGG | 0.455188 | 1_3:+10314102 | None:intergenic |
| CCATTCGAAGTGCAAATCTT+GGG | 0.457879 | 1_3:-10313164 | Msa0103190:CDS |
| CTGTACTGCATTATGGTACT+GGG | 0.458731 | 1_3:+10311184 | None:intergenic |
| GCACCTTGGGATCCAATAGT+TGG | 0.460032 | 1_3:-10312808 | Msa0103190:CDS |
| AAAGTTCCTCTGTGATGTTA+TGG | 0.461542 | 1_3:-10312770 | Msa0103190:intron |
| CTGCGGAAACCAGCATTTCT+CGG | 0.462154 | 1_3:+10317085 | None:intergenic |
| ATAACATCACAGAGGAACTT+TGG | 0.466771 | 1_3:+10312772 | None:intergenic |
| AACCATTTGTGGAGAATTGT+TGG | 0.467719 | 1_3:-10315976 | Msa0103190:CDS |
| GAAGAGGAAGAGATGAATGA+AGG | 0.469740 | 1_3:+10317368 | None:intergenic |
| CCCAAGATTTGCACTTCGAA+TGG | 0.470113 | 1_3:+10313164 | None:intergenic |
| ATGCAATCCCGGTTTCGATA+AGG | 0.470492 | 1_3:-10316992 | Msa0103190:intron |
| TCCGCAGATATCTTGAAGCT+TGG | 0.472276 | 1_3:-10317069 | Msa0103190:CDS |
| GCAAAACATTTACGTTGTGT+TGG | 0.472670 | 1_3:-10312416 | Msa0103190:CDS |
| GTGGCAAGGTACCGCACCTT+GGG | 0.474336 | 1_3:-10312821 | Msa0103190:CDS |
| ACGAGTTAGGTGAGTGAACT+CGG | 0.479955 | 1_3:+10317284 | None:intergenic |
| ATATACTCAGGTTGAAGGCT+TGG | 0.480503 | 1_3:-10312438 | Msa0103190:intron |
| GTTCAGGTGATACCTTCAGC+AGG | 0.480716 | 1_3:-10313039 | Msa0103190:CDS |
| TCGTCTGCGGTTTAATGTAA+TGG | 0.487271 | 1_3:-10310924 | Msa0103190:three_prime_UTR |
| AACTAACTATTTAATTTCAA+CGG | 0.487872 | 1_3:-10310834 | Msa0103190:three_prime_UTR |
| ATTCTACGCTGCAGGAGAGT+TGG | 0.488155 | 1_3:-10313208 | Msa0103190:intron |
| GACGAGGGAGGTTTGAGTTA+GGG | 0.492859 | 1_3:+10317260 | None:intergenic |
| AAGGAATATACTCAGGTTGA+AGG | 0.492962 | 1_3:-10312443 | Msa0103190:intron |
| ATGGATGCTCATTGCTTGCT+CGG | 0.498298 | 1_3:-10314069 | Msa0103190:CDS |
| ACAATACCTCCCAATAAAGT+TGG | 0.500595 | 1_3:+10311512 | None:intergenic |
| ATTGCATCCTTGTTCACAAA+AGG | 0.500679 | 1_3:+10317008 | None:intergenic |
| TGTGAACAAGGATGCAATCC+CGG | 0.506138 | 1_3:-10317003 | Msa0103190:CDS |
| CCAGATGACATATGCAGCTA+TGG | 0.508239 | 1_3:-10314088 | Msa0103190:CDS |
| GGAACCTCTCCGAGAAATGC+TGG | 0.508729 | 1_3:-10317094 | Msa0103190:CDS |
| ATAGCCTCTTCAGTTGAAAG+TGG | 0.510202 | 1_3:+10311616 | None:intergenic |
| TGAATCACTGCCCCTGCTGA+AGG | 0.517305 | 1_3:+10313027 | None:intergenic |
| CCATTTGTGGAGAATTGTTG+GGG | 0.523216 | 1_3:-10315974 | Msa0103190:CDS |
| CGAGTTGACACGCGATTTGG+AGG | 0.530138 | 1_3:+10317175 | None:intergenic |
| ATTTAAGGTCTTTCAGGCAA+CGG | 0.532461 | 1_3:-10314043 | Msa0103190:CDS |
| TTCAATGGAAATGTATTCAG+TGG | 0.535048 | 1_3:+10311087 | None:intergenic |
| GTTAGCTATGGGAAAAGAGA+TGG | 0.538188 | 1_3:+10317399 | None:intergenic |
| AGTTCGGACGGGTTTCCACT+CGG | 0.540037 | 1_3:+10317227 | None:intergenic |
| GATTAATTTAAACTTTGTCA+AGG | 0.540547 | 1_3:-10311131 | Msa0103190:exon |
| GAGGGAGGGAGATAAGGTCG+AGG | 0.541400 | 1_3:+10317130 | None:intergenic |
| GAGGCTATTGAAGCTGCAAA+GGG | 0.542175 | 1_3:-10311601 | Msa0103190:CDS |
| TTTAAAGGAATTGTATTCAG+TGG | 0.552369 | 1_3:+10310955 | None:intergenic |
| AGTGGCAAGGTACCGCACCT+TGG | 0.553048 | 1_3:-10312822 | Msa0103190:CDS |
| AGAGGCTATTGAAGCTGCAA+AGG | 0.553698 | 1_3:-10311602 | Msa0103190:CDS |
| TCTAGAGGTTTCTGGTTCGG+TGG | 0.554263 | 1_3:+10317336 | None:intergenic |
| GAAGCCACTTTCAACTGAAG+AGG | 0.554381 | 1_3:-10311620 | Msa0103190:CDS |
| TGATTCAAAAGTCATCATGT+AGG | 0.563710 | 1_3:-10313011 | Msa0103190:CDS |
| TTAAACAAATTGCATCCATA+CGG | 0.563825 | 1_3:+10310722 | None:intergenic |
| TTGAAAATTGTCAGAAAACA+TGG | 0.565414 | 1_3:-10312961 | Msa0103190:CDS |
| GTGAGTGAACTCGGGTGAGT+CGG | 0.567429 | 1_3:+10317293 | None:intergenic |
| GATTCAAAAGTCATCATGTA+GGG | 0.569974 | 1_3:-10313010 | Msa0103190:CDS |
| GATTAATTTAAACTTCGTCA+AGG | 0.570655 | 1_3:-10310999 | Msa0103190:three_prime_UTR |
| CCCATATTGAAGAGAGAGGG+AGG | 0.572831 | 1_3:+10317115 | None:intergenic |
| TCATCTCTTCCTCTTCAACA+TGG | 0.574204 | 1_3:-10317361 | Msa0103190:exon |
| GGAGGGAGATAAGGTCGAGG+AGG | 0.575742 | 1_3:+10317133 | None:intergenic |
| TCAAGATGCACAAAATGCAA+TGG | 0.575984 | 1_3:-10311655 | Msa0103190:CDS |
| ACACTCGTAATATCCAAATA+CGG | 0.580297 | 1_3:+10316062 | None:intergenic |
| ATTTAGAGAACTTTGATGAG+TGG | 0.582031 | 1_3:-10312840 | Msa0103190:CDS |
| ACCTTGGGATCCAATAGTTG+GGG | 0.583139 | 1_3:-10312806 | Msa0103190:CDS |
| ATGTAGGGATACTAAGCCAA+TGG | 0.584459 | 1_3:-10312995 | Msa0103190:CDS |
| ATTCAAACCTTATCGAAACC+GGG | 0.584714 | 1_3:+10316985 | None:intergenic |
| AGTGAACTCGGGTGAGTCGG+TGG | 0.585940 | 1_3:+10317296 | None:intergenic |
| GTGACGAAGTGGATTTCTAG+AGG | 0.586873 | 1_3:+10317321 | None:intergenic |
| CTCCAAATCGCGTGTCAACT+CGG | 0.589593 | 1_3:-10317174 | Msa0103190:CDS |
| ATTTGGAGGAGTGAGACGGT+GGG | 0.590066 | 1_3:+10317189 | None:intergenic |
| GAGAACTTTGATGAGTGGCA+AGG | 0.591373 | 1_3:-10312835 | Msa0103190:CDS |
| GATTTGGAGGAGTGAGACGG+TGG | 0.592283 | 1_3:+10317188 | None:intergenic |
| TTCAGGTGATACCTTCAGCA+GGG | 0.596087 | 1_3:-10313038 | Msa0103190:CDS |
| CGAGTTAGGTGAGTGAACTC+GGG | 0.599637 | 1_3:+10317285 | None:intergenic |
| CTGTCACCAACTTTATTGGG+AGG | 0.600563 | 1_3:-10311518 | Msa0103190:intron |
| GTTGTGACCAATCACTACAT+TGG | 0.602180 | 1_3:+10314127 | None:intergenic |
| GTTCCCATATTGAAGAGAGA+GGG | 0.604804 | 1_3:+10317112 | None:intergenic |
| GATGCACAAAATGCAATGGA+AGG | 0.607518 | 1_3:-10311651 | Msa0103190:CDS |
| GGTTCCCATATTGAAGAGAG+AGG | 0.608783 | 1_3:+10317111 | None:intergenic |
| TCGTCGGACTCGACGCCGAG+TGG | 0.612313 | 1_3:-10317242 | Msa0103190:CDS |
| CAGCAACAACAGTTGAGAGA+AGG | 0.613102 | 1_3:+10310868 | None:intergenic |
| TCTTCAAGTAATCCCTGATG+TGG | 0.613317 | 1_3:+10310799 | None:intergenic |
| TCTGAATGATAAATGCCGTA+TGG | 0.614774 | 1_3:-10310737 | Msa0103190:three_prime_UTR |
| GAACTCGGGTGAGTCGGTGG+TGG | 0.616952 | 1_3:+10317299 | None:intergenic |
| CCATATTGAAGAGAGAGGGA+GGG | 0.618013 | 1_3:+10317116 | None:intergenic |
| AAGGATGTGCACGTGAGTAA+TGG | 0.620225 | 1_3:-10310980 | Msa0103190:three_prime_UTR |
| AAGGATGTGCACGTGAGTAA+TGG | 0.620225 | 1_3:-10311112 | Msa0103190:three_prime_UTR |
| TCGGTGGATCCATGTTGAAG+AGG | 0.623084 | 1_3:+10317352 | None:intergenic |
| AGTCGGTGGTGGTGACGAAG+TGG | 0.632308 | 1_3:+10317310 | None:intergenic |
| CTCGGCGTCGAGTCCGACGA+GGG | 0.632562 | 1_3:+10317245 | None:intergenic |
| TTTGGAGGAGTGAGACGGTG+GGG | 0.638956 | 1_3:+10317190 | None:intergenic |
| TCAGGTGATACCTTCAGCAG+GGG | 0.648948 | 1_3:-10313037 | Msa0103190:CDS |
| CGCGATTTGGAGGAGTGAGA+CGG | 0.650990 | 1_3:+10317185 | None:intergenic |
| CTAACTCAAACCTCCCTCGT+CGG | 0.652710 | 1_3:-10317258 | Msa0103190:CDS |
| ACTCGGCGTCGAGTCCGACG+AGG | 0.653753 | 1_3:+10317244 | None:intergenic |
| TTGTCACCAAAAGCTAACAA+TGG | 0.658647 | 1_3:+10310667 | None:intergenic |
| AACTATTGGATCCCAAGGTG+CGG | 0.659265 | 1_3:+10312810 | None:intergenic |
| AAAAGCTAACAATGGCTGAG+TGG | 0.666874 | 1_3:+10310675 | None:intergenic |
| ATGTATAAACTAATTGTACA+CGG | 0.669784 | 1_3:+10311022 | None:intergenic |
| GGCGTCGAGTCCGACGAGGG+AGG | 0.674089 | 1_3:+10317248 | None:intergenic |
| AAGTGATGTATACCACATCA+GGG | 0.681223 | 1_3:-10310811 | Msa0103190:three_prime_UTR |
| GAAACCAGCATTTCTCGGAG+AGG | 0.684392 | 1_3:+10317090 | None:intergenic |
| TCCAAGCTTCAAGATATCTG+CGG | 0.684999 | 1_3:+10317068 | None:intergenic |
| CTTCAAAGAAGCCTGAACCA+AGG | 0.685428 | 1_3:-10312373 | Msa0103190:intron |
| CCTTGGGATCCAATAGTTGG+GGG | 0.730135 | 1_3:-10312805 | Msa0103190:CDS |
| TGCTTACCATAACATCACAG+AGG | 0.777770 | 1_3:+10312764 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAAAAAAACTAGTTT+TGG | - | chr1_3:10312481-10312500 | Msa0103190:intron | 10.0% |
| !!! | ATAATACTTTTCTAAATCAA+AGG | + | chr1_3:10312518-10312537 | None:intergenic | 15.0% |
| !! | TAGTTTCTATCTTAAAAAAA+TGG | + | chr1_3:10312557-10312576 | None:intergenic | 15.0% |
| !! | ACATGAATAAAATAATTGTA+AGG | + | chr1_3:10313138-10313157 | None:intergenic | 15.0% |
| !! | ATTCTGTAACTAATAATATT+TGG | + | chr1_3:10313649-10313668 | None:intergenic | 15.0% |
| !! | TATGTTTATTGAGTTTAAAA+AGG | - | chr1_3:10313671-10313690 | Msa0103190:intron | 15.0% |
| !! | TTATACTTAGATTAGTATAA+AGG | - | chr1_3:10316205-10316224 | Msa0103190:intron | 15.0% |
| !! | AAAACAAAATATAGAATCAT+TGG | + | chr1_3:10316676-10316695 | None:intergenic | 15.0% |
| !!! | AACTAACTATTTAATTTCAA+CGG | - | chr1_3:10317204-10317223 | Msa0103190:CDS | 15.0% |
| !! | ACTTATAAAACCAATTAGAA+CGG | - | chr1_3:10311387-10311406 | Msa0103190:intron | 20.0% |
| !! | AATATAATATATGCAAAGTC+CGG | - | chr1_3:10311448-10311467 | Msa0103190:intron | 20.0% |
| !!! | AATTGGCTTTTTTTTTTTTG+TGG | + | chr1_3:10311491-10311510 | None:intergenic | 20.0% |
| !! | AAACATACTGATAGTTATAT+TGG | + | chr1_3:10311646-10311665 | None:intergenic | 20.0% |
| !! | TATCTTAAAAAAATGGAGTT+CGG | + | chr1_3:10312550-10312569 | None:intergenic | 20.0% |
| !! | AAGAATATTTAAGCTTTACA+TGG | + | chr1_3:10313074-10313093 | None:intergenic | 20.0% |
| !! | AAAAAAACATAGATGTTCTT+TGG | + | chr1_3:10313382-10313401 | None:intergenic | 20.0% |
| !! | TGAGTTTAAAAAGGAATAAT+AGG | - | chr1_3:10313680-10313699 | Msa0103190:intron | 20.0% |
| !! | ATGTATATAATAGGACATAA+GGG | - | chr1_3:10313766-10313785 | Msa0103190:intron | 20.0% |
| !!! | TATATGGCTTATTTTATAAC+TGG | - | chr1_3:10314289-10314308 | Msa0103190:intron | 20.0% |
| !!! | TTTTTTGTCTTTTCTTGATA+TGG | + | chr1_3:10314353-10314372 | None:intergenic | 20.0% |
| !! | TTTAAAAAATGCAAACTGAA+AGG | + | chr1_3:10314492-10314511 | None:intergenic | 20.0% |
| !!! | TCGTTTGTTAAAATAAATAG+TGG | - | chr1_3:10314515-10314534 | Msa0103190:intron | 20.0% |
| !! | ATATTTATTGAAATGCGTTA+TGG | - | chr1_3:10315494-10315513 | Msa0103190:intron | 20.0% |
| !! | TAAGTTCATTATTATTTGTG+TGG | - | chr1_3:10315738-10315757 | Msa0103190:intron | 20.0% |
| !!! | TAGAAAGATTACATATTTTG+AGG | - | chr1_3:10315962-10315981 | Msa0103190:CDS | 20.0% |
| !! | TAGTATAACATTATCTTTCA+AGG | - | chr1_3:10316029-10316048 | Msa0103190:CDS | 20.0% |
| !!! | GTATAGAATGTTAATTTTCA+TGG | - | chr1_3:10316068-10316087 | Msa0103190:CDS | 20.0% |
| !!! | ATTTGACTTAAAAAATCCAT+GGG | + | chr1_3:10316139-10316158 | None:intergenic | 20.0% |
| !!! | AATTTGACTTAAAAAATCCA+TGG | + | chr1_3:10316140-10316159 | None:intergenic | 20.0% |
| !! | AGTCAAATTAATATTTAACC+TGG | - | chr1_3:10316151-10316170 | Msa0103190:intron | 20.0% |
| !!! | ATAAGCAATTTGGTATTTTT+TGG | + | chr1_3:10316466-10316485 | None:intergenic | 20.0% |
| !! | TTCTTGTTAAATAAGCAATT+TGG | + | chr1_3:10316476-10316495 | None:intergenic | 20.0% |
| !!! | TTAACAAGAATTTAGAGTTT+TGG | - | chr1_3:10316486-10316505 | Msa0103190:intron | 20.0% |
| !! | GTTATGTAAGATAAATGATA+AGG | + | chr1_3:10316591-10316610 | None:intergenic | 20.0% |
| !! | AAATAACTTCAAAACATATG+AGG | + | chr1_3:10316729-10316748 | None:intergenic | 20.0% |
| !! | GATTAATTTAAACTTTGTCA+AGG | - | chr1_3:10316907-10316926 | Msa0103190:intron | 20.0% |
| !! | ATGTATAAACTAATTGTACA+CGG | + | chr1_3:10317019-10317038 | None:intergenic | 20.0% |
| ! | GTTGTAATAATTAGTTACAC+CGG | - | chr1_3:10311232-10311251 | Msa0103190:intron | 25.0% |
| ! | ATTCTAACTTCTTAACTAAC+CGG | + | chr1_3:10311254-10311273 | None:intergenic | 25.0% |
| ! | ATATAATATATGCAAAGTCC+GGG | - | chr1_3:10311449-10311468 | Msa0103190:intron | 25.0% |
| !! | TAAGTACTCATTTAGAATCA+CGG | - | chr1_3:10311519-10311538 | Msa0103190:CDS | 25.0% |
| ! | CAGGAATTTAATATATGTGA+TGG | - | chr1_3:10311670-10311689 | Msa0103190:CDS | 25.0% |
| ! | CATCTTCAGTTTAAGAAAAA+TGG | - | chr1_3:10312006-10312025 | Msa0103190:intron | 25.0% |
| ! | TTCAGTTTAAGAAAAATGGA+AGG | - | chr1_3:10312010-10312029 | Msa0103190:intron | 25.0% |
| !!! | AGCCATTCAATTCAATTTTT+TGG | - | chr1_3:10312122-10312141 | Msa0103190:intron | 25.0% |
| !!! | GCCATTCAATTCAATTTTTT+GGG | - | chr1_3:10312123-10312142 | Msa0103190:CDS | 25.0% |
| ! | ACCCAAAAAATTGAATTGAA+TGG | + | chr1_3:10312127-10312146 | None:intergenic | 25.0% |
| !!! | CACAATTAGAAGTTAGTTTT+CGG | - | chr1_3:10312263-10312282 | Msa0103190:intron | 25.0% |
| ! | AGGAACACTAGAAAATATAT+CGG | + | chr1_3:10312434-10312453 | None:intergenic | 25.0% |
| ! | AATAATACTGTAGGATACAA+AGG | + | chr1_3:10312454-10312473 | None:intergenic | 25.0% |
| ! | TTTGTCGAAAATAATACTGT+AGG | + | chr1_3:10312463-10312482 | None:intergenic | 25.0% |
| !!! | AAAACAAGATGTTAGCTTTT+TGG | + | chr1_3:10312638-10312657 | None:intergenic | 25.0% |
| !! | ATTTGTTAACTTAAACTTCC+AGG | + | chr1_3:10312742-10312761 | None:intergenic | 25.0% |
| !! | CTGGCAATATTTATGTATTT+TGG | + | chr1_3:10313008-10313027 | None:intergenic | 25.0% |
| ! | CAAAATACATAAATATTGCC+AGG | - | chr1_3:10313006-10313025 | Msa0103190:CDS | 25.0% |
| ! | AAATTTCATTCCTAAGTAGA+TGG | - | chr1_3:10313306-10313325 | Msa0103190:intron | 25.0% |
| ! | TAGTCAACTTACAAAAGATT+AGG | + | chr1_3:10313469-10313488 | None:intergenic | 25.0% |
| ! | CAGTTTATGTTAATAGAAAC+AGG | - | chr1_3:10313743-10313762 | Msa0103190:intron | 25.0% |
| ! | AGAAACAGGATGTATATAAT+AGG | - | chr1_3:10313757-10313776 | Msa0103190:intron | 25.0% |
| ! | GATGTATATAATAGGACATA+AGG | - | chr1_3:10313765-10313784 | Msa0103190:intron | 25.0% |
| ! | TGTATATAATAGGACATAAG+GGG | - | chr1_3:10313767-10313786 | Msa0103190:intron | 25.0% |
| ! | GCGAATTAATTTAAACTAGA+GGG | + | chr1_3:10314149-10314168 | None:intergenic | 25.0% |
| !!! | CAGCATTCTATTTTTCAAAT+TGG | - | chr1_3:10314199-10314218 | Msa0103190:intron | 25.0% |
| !! | AATTTCTTCTGAAGAGTTTA+TGG | + | chr1_3:10314251-10314270 | None:intergenic | 25.0% |
| ! | TATTCTATATCCATTCACTA+AGG | - | chr1_3:10314769-10314788 | Msa0103190:intron | 25.0% |
| ! | TACACAGAATTTCTTGTAAT+TGG | - | chr1_3:10314797-10314816 | Msa0103190:intron | 25.0% |
| ! | TTCAACAAAAATTCATCCAT+TGG | + | chr1_3:10315062-10315081 | None:intergenic | 25.0% |
| ! | TTGAAAATTGTCAGAAAACA+TGG | - | chr1_3:10315077-10315096 | Msa0103190:intron | 25.0% |
| !! | TTCTCTAAATGTTTTTCTCT+GGG | + | chr1_3:10315188-10315207 | None:intergenic | 25.0% |
| ! | GTTCATAAAAATTGAAGAGA+GGG | + | chr1_3:10315327-10315346 | None:intergenic | 25.0% |
| ! | TGGAGCATATAATATATGAT+CGG | - | chr1_3:10315424-10315443 | Msa0103190:intron | 25.0% |
| ! | ATAAAATGTGAGTATGAATC+TGG | - | chr1_3:10315571-10315590 | Msa0103190:intron | 25.0% |
| ! | TCAATTTCTCAAGCAATATA+TGG | + | chr1_3:10316282-10316301 | None:intergenic | 25.0% |
| ! | GATCTTCGTTAATATTTAGT+TGG | + | chr1_3:10316355-10316374 | None:intergenic | 25.0% |
| ! | TAAGATAAATGATAAGGCAA+TGG | + | chr1_3:10316585-10316604 | None:intergenic | 25.0% |
| ! | AAAACATATGAGGTGAAAAA+GGG | + | chr1_3:10316719-10316738 | None:intergenic | 25.0% |
| !!! | ATTTATTTTGACTACGAAAG+AGG | - | chr1_3:10316745-10316764 | Msa0103190:intron | 25.0% |
| !!! | TTTATTTTGACTACGAAAGA+GGG | - | chr1_3:10316746-10316765 | Msa0103190:intron | 25.0% |
| ! | CTGTAATAATAAATCAGAGT+AGG | + | chr1_3:10316784-10316803 | None:intergenic | 25.0% |
| ! | GATTAATTTAAACTTCGTCA+AGG | - | chr1_3:10317039-10317058 | Msa0103190:CDS | 25.0% |
| ! | TTTAAAGGAATTGTATTCAG+TGG | + | chr1_3:10317086-10317105 | None:intergenic | 25.0% |
| !! | CAGACGATATTTTTCTTTAA+AGG | + | chr1_3:10317101-10317120 | None:intergenic | 25.0% |
| ! | TTAAAGAAAAATATCGTCTG+CGG | - | chr1_3:10317101-10317120 | Msa0103190:CDS | 25.0% |
| ! | TTAAACAAATTGCATCCATA+CGG | + | chr1_3:10317319-10317338 | None:intergenic | 25.0% |
| AATTCAAACCTTATCGAAAC+CGG | + | chr1_3:10311057-10311076 | None:intergenic | 30.0% | |
| ACTCATCGAGAATTGTAATA+TGG | + | chr1_3:10311161-10311180 | None:intergenic | 30.0% | |
| TACCATACTACAATTCTTGA+TGG | - | chr1_3:10311284-10311303 | Msa0103190:intron | 30.0% | |
| TTCCATCAAGAATTGTAGTA+TGG | + | chr1_3:10311289-10311308 | None:intergenic | 30.0% | |
| TATAATATATGCAAAGTCCG+GGG | - | chr1_3:10311450-10311469 | Msa0103190:intron | 30.0% | |
| !!! | TTTTTTTTTTTTGTGGTGGC+CGG | + | chr1_3:10311484-10311503 | None:intergenic | 30.0% |
| !!! | TGGCTTTTTTTTTTTTGTGG+TGG | + | chr1_3:10311488-10311507 | None:intergenic | 30.0% |
| GAGTACTTAGTTGTTCTAAT+TGG | + | chr1_3:10311508-10311527 | None:intergenic | 30.0% | |
| AAAATGTAGAAGCTCCAATT+TGG | + | chr1_3:10311580-10311599 | None:intergenic | 30.0% | |
| ACTGATAGTTATATTGGCAA+TGG | + | chr1_3:10311640-10311659 | None:intergenic | 30.0% | |
| ACTATCAGTATGTTTAATGC+AGG | - | chr1_3:10311651-10311670 | Msa0103190:CDS | 30.0% | |
| TGTAATATGATATCAGAGTC+AGG | + | chr1_3:10311717-10311736 | None:intergenic | 30.0% | |
| ACACTCGTAATATCCAAATA+CGG | + | chr1_3:10311979-10311998 | None:intergenic | 30.0% | |
| TTGCTGTATTAAATGTAGTC+AGG | - | chr1_3:10312391-10312410 | Msa0103190:CDS | 30.0% | |
| !!! | AAAACTAGTTTTGGAAGCTA+AGG | - | chr1_3:10312490-10312509 | Msa0103190:intron | 30.0% |
| !!! | AAACTAGTTTTGGAAGCTAA+GGG | - | chr1_3:10312491-10312510 | Msa0103190:intron | 30.0% |
| GTCATAAACGTAGATATGTT+TGG | - | chr1_3:10312579-10312598 | Msa0103190:intron | 30.0% | |
| CCTATATAATAGAGTCTATG+TGG | + | chr1_3:10312923-10312942 | None:intergenic | 30.0% | |
| CCACATAGACTCTATTATAT+AGG | - | chr1_3:10312920-10312939 | Msa0103190:CDS | 30.0% | |
| ATGTCAGACATCAATATACA+CGG | - | chr1_3:10313154-10313173 | Msa0103190:CDS | 30.0% | |
| ! | ATATACACGGTGTCAAAATT+AGG | - | chr1_3:10313167-10313186 | Msa0103190:CDS | 30.0% |
| !! | ATTAGGTGCTTTATTTCTGT+AGG | - | chr1_3:10313184-10313203 | Msa0103190:CDS | 30.0% |
| TTAGGAATGAAATTTGCACA+AGG | + | chr1_3:10313301-10313320 | None:intergenic | 30.0% | |
| TTTGTTGAATCCATCTACTT+AGG | + | chr1_3:10313319-10313338 | None:intergenic | 30.0% | |
| ACATGCTTTCTCAAATTTGT+TGG | - | chr1_3:10313561-10313580 | Msa0103190:intron | 30.0% | |
| TAGTAACTGAAAATGCTAGT+TGG | + | chr1_3:10313855-10313874 | None:intergenic | 30.0% | |
| GACTGAATTATGTTTGCTTT+AGG | - | chr1_3:10313884-10313903 | Msa0103190:intron | 30.0% | |
| CTTTCAGTAAAAACCTTCTT+CGG | + | chr1_3:10314024-10314043 | None:intergenic | 30.0% | |
| CGCGAATTAATTTAAACTAG+AGG | + | chr1_3:10314150-10314169 | None:intergenic | 30.0% | |
| GATGATGCAGAAAAGATATA+TGG | - | chr1_3:10314273-10314292 | Msa0103190:intron | 30.0% | |
| AAAATTATTTGTGCCATCCT+TGG | - | chr1_3:10314371-10314390 | Msa0103190:intron | 30.0% | |
| GCAAAGTGAAACTATTAATC+AGG | + | chr1_3:10314417-10314436 | None:intergenic | 30.0% | |
| GATGTGAAAGTAAGATCATA+TGG | + | chr1_3:10314738-10314757 | None:intergenic | 30.0% | |
| TTTATTAAATTCTACGCTGC+AGG | - | chr1_3:10314822-10314841 | Msa0103190:intron | 30.0% | |
| ACTTCGAATGGATAATCTAT+TGG | + | chr1_3:10314865-10314884 | None:intergenic | 30.0% | |
| TGATTCAAAAGTCATCATGT+AGG | - | chr1_3:10315027-10315046 | Msa0103190:intron | 30.0% | |
| GATTCAAAAGTCATCATGTA+GGG | - | chr1_3:10315028-10315047 | Msa0103190:intron | 30.0% | |
| ! | GTTCTCTAAATGTTTTTCTC+TGG | + | chr1_3:10315189-10315208 | None:intergenic | 30.0% |
| ATTTAGAGAACTTTGATGAG+TGG | - | chr1_3:10315198-10315217 | Msa0103190:intron | 30.0% | |
| CGTTCATAAAAATTGAAGAG+AGG | + | chr1_3:10315328-10315347 | None:intergenic | 30.0% | |
| TATACCCTTTCGTTAATCTT+TGG | - | chr1_3:10315353-10315372 | Msa0103190:intron | 30.0% | |
| TAGTTAAATTCCAATCACTC+TGG | - | chr1_3:10315404-10315423 | Msa0103190:intron | 30.0% | |
| ATTGAAATGCGTTATGGAAA+AGG | - | chr1_3:10315500-10315519 | Msa0103190:intron | 30.0% | |
| CAAAACATTTACGTTGTGTT+GGG | - | chr1_3:10315623-10315642 | Msa0103190:intron | 30.0% | |
| AAAAAATGAACAGCTACTTG+AGG | - | chr1_3:10315916-10315935 | Msa0103190:intron | 30.0% | |
| TATCTTTCAAGGAACTCTTA+TGG | - | chr1_3:10316040-10316059 | Msa0103190:CDS | 30.0% | |
| !!! | CAATTTTAGCTGTGTCATTA+TGG | + | chr1_3:10316307-10316326 | None:intergenic | 30.0% |
| GTTGGAAAGTTTCAATAATC+TGG | + | chr1_3:10316337-10316356 | None:intergenic | 30.0% | |
| !! | TTTAGAGTTTTGGCAATGTA+TGG | - | chr1_3:10316496-10316515 | Msa0103190:intron | 30.0% |
| !! | ATAGAATCATTGGTTTCAGT+TGG | + | chr1_3:10316666-10316685 | None:intergenic | 30.0% |
| CAAAACATATGAGGTGAAAA+AGG | + | chr1_3:10316720-10316739 | None:intergenic | 30.0% | |
| !!! | TTATTTTGACTACGAAAGAG+GGG | - | chr1_3:10316747-10316766 | Msa0103190:intron | 30.0% |
| TTCAATGGAAATGTATTCAG+TGG | + | chr1_3:10316954-10316973 | None:intergenic | 30.0% | |
| ! | AGACTGACATTTTTCTTCAA+TGG | + | chr1_3:10316969-10316988 | None:intergenic | 30.0% |
| TTCAAAGACAACGTATTTAG+TGG | + | chr1_3:10317142-10317161 | None:intergenic | 30.0% | |
| ! | GAAGAGATGAATGAAGGTTT+TGG | + | chr1_3:10310667-10310686 | None:intergenic | 35.0% |
| !! | ATTTCTAGAGGTTTCTGGTT+CGG | + | chr1_3:10310708-10310727 | None:intergenic | 35.0% |
| ! | TCTTCTACCTTTTGTGAACA+AGG | - | chr1_3:10311023-10311042 | Msa0103190:three_prime_UTR | 35.0% |
| ATTGCATCCTTGTTCACAAA+AGG | + | chr1_3:10311033-10311052 | None:intergenic | 35.0% | |
| ATTCAAACCTTATCGAAACC+GGG | + | chr1_3:10311056-10311075 | None:intergenic | 35.0% | |
| TGTTCTATTGTCGTATCTCT+TGG | + | chr1_3:10311365-10311384 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTTTTGTGGTGGCC+GGG | + | chr1_3:10311483-10311502 | None:intergenic | 35.0% |
| !!! | TTTTCACGTTTTTCAAGCCT+TGG | - | chr1_3:10311596-10311615 | Msa0103190:CDS | 35.0% |
| !!! | TTTCACGTTTTTCAAGCCTT+GGG | - | chr1_3:10311597-10311616 | Msa0103190:CDS | 35.0% |
| ! | GACTGGTTAGTTGTTCTAAT+TGG | + | chr1_3:10311846-10311865 | None:intergenic | 35.0% |
| ACTAGTCAGTTCATTTAGAC+TGG | + | chr1_3:10311863-10311882 | None:intergenic | 35.0% | |
| AAGAGTTTGTCAACCATTTG+TGG | - | chr1_3:10312051-10312070 | Msa0103190:intron | 35.0% | |
| AACCATTTGTGGAGAATTGT+TGG | - | chr1_3:10312062-10312081 | Msa0103190:intron | 35.0% | |
| ACCATTTGTGGAGAATTGTT+GGG | - | chr1_3:10312063-10312082 | Msa0103190:intron | 35.0% | |
| TGTGTTCAGAAAACAAGTAG+TGG | - | chr1_3:10312154-10312173 | Msa0103190:CDS | 35.0% | |
| ! | CAAATATCACAGCATTGAGT+AGG | - | chr1_3:10312202-10312221 | Msa0103190:CDS | 35.0% |
| !!! | AAGTTAGTTTTCGGTGTTTG+TGG | - | chr1_3:10312272-10312291 | Msa0103190:intron | 35.0% |
| ! | GAGTTTTCACTTAGCATATG+AGG | - | chr1_3:10312343-10312362 | Msa0103190:intron | 35.0% |
| TTGTATAAAACACATCGTCC+TGG | - | chr1_3:10312721-10312740 | Msa0103190:intron | 35.0% | |
| ! | ATGGCCTTAAACTTGTATCA+TGG | - | chr1_3:10312781-10312800 | Msa0103190:CDS | 35.0% |
| GAAGCCATGATACAAGTTTA+AGG | + | chr1_3:10312788-10312807 | None:intergenic | 35.0% | |
| CTTAATACATGAACAGTGAG+CGG | - | chr1_3:10312828-10312847 | Msa0103190:CDS | 35.0% | |
| TTAATACATGAACAGTGAGC+GGG | - | chr1_3:10312829-10312848 | Msa0103190:CDS | 35.0% | |
| TCTCTAGTTATCTCTCATTC+AGG | + | chr1_3:10312860-10312879 | None:intergenic | 35.0% | |
| AGATAACTAGAGACATGTGA+TGG | - | chr1_3:10312867-10312886 | Msa0103190:CDS | 35.0% | |
| GTGTAGTTCAAAGTTCAAAC+CGG | + | chr1_3:10312901-10312920 | None:intergenic | 35.0% | |
| GCTTTATATAACCTTGCAGT+CGG | + | chr1_3:10313044-10313063 | None:intergenic | 35.0% | |
| TCAAAGCATAAGTTGCAAGT+TGG | - | chr1_3:10313093-10313112 | Msa0103190:CDS | 35.0% | |
| TTGGCAGCATTAATGTTCTT+TGG | + | chr1_3:10313417-10313436 | None:intergenic | 35.0% | |
| ACATTAATGCTGCCAACATA+AGG | - | chr1_3:10313421-10313440 | Msa0103190:intron | 35.0% | |
| GTTTAAACCAGTCCTTATGT+TGG | + | chr1_3:10313436-10313455 | None:intergenic | 35.0% | |
| ! | TTTTGCTCCATTGGAATTTC+AGG | - | chr1_3:10313815-10313834 | Msa0103190:intron | 35.0% |
| ! | TTTGGAACCTGAAATTCCAA+TGG | + | chr1_3:10313825-10313844 | None:intergenic | 35.0% |
| TTGCTTGCTCGGAATATTTA+AGG | - | chr1_3:10313980-10313999 | Msa0103190:intron | 35.0% | |
| ! | CGGAATATTTAAGGTCTTTC+AGG | - | chr1_3:10313989-10314008 | Msa0103190:intron | 35.0% |
| ! | ATTTAAGGTCTTTCAGGCAA+CGG | - | chr1_3:10313995-10314014 | Msa0103190:intron | 35.0% |
| GAAAGTTTCATACCAATCTC+TGG | - | chr1_3:10314039-10314058 | Msa0103190:CDS | 35.0% | |
| ! | TCTATAGTTTGTCCAGAGAT+TGG | + | chr1_3:10314054-10314073 | None:intergenic | 35.0% |
| TTGGATCGATTAAGTTTGAC+TGG | - | chr1_3:10314218-10314237 | Msa0103190:intron | 35.0% | |
| TTCTTGATATGGAACTCAAG+TGG | + | chr1_3:10314342-10314361 | None:intergenic | 35.0% | |
| CAAATGGAAAATTCCAAGGA+TGG | + | chr1_3:10314387-10314406 | None:intergenic | 35.0% | |
| GACACAAATGGAAAATTCCA+AGG | + | chr1_3:10314391-10314410 | None:intergenic | 35.0% | |
| TTAATCAGGCAAGACACAAA+TGG | + | chr1_3:10314403-10314422 | None:intergenic | 35.0% | |
| TTGACCAAGTAGCAGATTAT+TGG | - | chr1_3:10314445-10314464 | Msa0103190:intron | 35.0% | |
| TGACCAAGTAGCAGATTATT+GGG | - | chr1_3:10314446-10314465 | Msa0103190:intron | 35.0% | |
| GTGTATACATCCTTAGTGAA+TGG | + | chr1_3:10314782-10314801 | None:intergenic | 35.0% | |
| ! | CACACAATTTTGTGAAGCTT+TGG | - | chr1_3:10314944-10314963 | Msa0103190:intron | 35.0% |
| TTCTTGTTCTGATGTTGTTC+AGG | - | chr1_3:10314983-10315002 | Msa0103190:intron | 35.0% | |
| TTGTCAGAAAACATGGTGAT+AGG | - | chr1_3:10315084-10315103 | Msa0103190:intron | 35.0% | |
| ! | TGGTGATAGGATTTTGCTAA+AGG | - | chr1_3:10315097-10315116 | Msa0103190:intron | 35.0% |
| !!! | CGTTTCTTTTTTGAGGTCTT+GGG | + | chr1_3:10315137-10315156 | None:intergenic | 35.0% |
| CCAAGACCTCAAAAAAGAAA+CGG | - | chr1_3:10315135-10315154 | Msa0103190:intron | 35.0% | |
| !!! | CTTCTTCCGTTTCTTTTTTG+AGG | + | chr1_3:10315144-10315163 | None:intergenic | 35.0% |
| AAGAAGCAGTTGCCAATTAA+TGG | - | chr1_3:10315158-10315177 | Msa0103190:intron | 35.0% | |
| AGAAGCAGTTGCCAATTAAT+GGG | - | chr1_3:10315159-10315178 | Msa0103190:intron | 35.0% | |
| ATAACATCACAGAGGAACTT+TGG | + | chr1_3:10315269-10315288 | None:intergenic | 35.0% | |
| AAAGTTCCTCTGTGATGTTA+TGG | - | chr1_3:10315268-10315287 | Msa0103190:intron | 35.0% | |
| ACCTCCAAAGATTAACGAAA+GGG | + | chr1_3:10315360-10315379 | None:intergenic | 35.0% | |
| AACCTCCAAAGATTAACGAA+AGG | + | chr1_3:10315361-10315380 | None:intergenic | 35.0% | |
| ! | ATCTTTGGAGGTTAAGCAAT+AGG | - | chr1_3:10315368-10315387 | Msa0103190:intron | 35.0% |
| ATTATATGCTCCAGAGTGAT+TGG | + | chr1_3:10315417-10315436 | None:intergenic | 35.0% | |
| AATGCGTTATGGAAAAGGAA+AGG | - | chr1_3:10315505-10315524 | Msa0103190:intron | 35.0% | |
| ATGTGAGTATGAATCTGGTA+AGG | - | chr1_3:10315576-10315595 | Msa0103190:intron | 35.0% | |
| ATCTGGTAAGGAATATACTC+AGG | - | chr1_3:10315588-10315607 | Msa0103190:intron | 35.0% | |
| !! | AAGGAATATACTCAGGTTGA+AGG | - | chr1_3:10315595-10315614 | Msa0103190:intron | 35.0% |
| GCAAAACATTTACGTTGTGT+TGG | - | chr1_3:10315622-10315641 | Msa0103190:intron | 35.0% | |
| ATACTCTATTACCTTGGTTC+AGG | + | chr1_3:10315679-10315698 | None:intergenic | 35.0% | |
| ! | AGAAGCATACTCTATTACCT+TGG | + | chr1_3:10315685-10315704 | None:intergenic | 35.0% |
| ! | TTCTATTTTCCTCTTCCTGT+CGG | - | chr1_3:10315773-10315792 | Msa0103190:intron | 35.0% |
| ACAATGATAATTCATCCGAC+AGG | + | chr1_3:10315791-10315810 | None:intergenic | 35.0% | |
| !!! | AGAAAAGAGTGCTTTTGACA+CGG | - | chr1_3:10315840-10315859 | Msa0103190:intron | 35.0% |
| ACCATGCAAAAAATGAGCTA+GGG | + | chr1_3:10316241-10316260 | None:intergenic | 35.0% | |
| TCAAGATGCACAAAATGCAA+TGG | - | chr1_3:10316383-10316402 | Msa0103190:intron | 35.0% | |
| ACAATACCTCCCAATAAAGT+TGG | + | chr1_3:10316529-10316548 | None:intergenic | 35.0% | |
| AGTTGGATTAAGTAAGCGTT+TGG | + | chr1_3:10316649-10316668 | None:intergenic | 35.0% | |
| TATTGTGCCTGTCATATTCA+GGG | - | chr1_3:10316829-10316848 | Msa0103190:intron | 35.0% | |
| TGAAGAAAAATGTCAGTCTG+TGG | - | chr1_3:10316970-10316989 | Msa0103190:intron | 35.0% | |
| AAGTGATGTATACCACATCA+GGG | - | chr1_3:10317227-10317246 | Msa0103190:CDS | 35.0% | |
| TCTGAATGATAAATGCCGTA+TGG | - | chr1_3:10317301-10317320 | Msa0103190:CDS | 35.0% | |
| TTGTCACCAAAAGCTAACAA+TGG | + | chr1_3:10317374-10317393 | None:intergenic | 35.0% | |
| GTTAGCTATGGGAAAAGAGA+TGG | + | chr1_3:10310642-10310661 | None:intergenic | 40.0% | |
| !! | AGGTTTTGGTGGTTAGCTAT+GGG | + | chr1_3:10310653-10310672 | None:intergenic | 40.0% |
| !! | AAGGTTTTGGTGGTTAGCTA+TGG | + | chr1_3:10310654-10310673 | None:intergenic | 40.0% |
| !! | GAGATGAATGAAGGTTTTGG+TGG | + | chr1_3:10310664-10310683 | None:intergenic | 40.0% |
| GAAGAGGAAGAGATGAATGA+AGG | + | chr1_3:10310673-10310692 | None:intergenic | 40.0% | |
| TCATCTCTTCCTCTTCAACA+TGG | - | chr1_3:10310677-10310696 | Msa0103190:three_prime_UTR | 40.0% | |
| ! | AGTGGATTTCTAGAGGTTTC+TGG | + | chr1_3:10310713-10310732 | None:intergenic | 40.0% |
| ! | TTTGAGTTAGGGAACGAGTT+AGG | + | chr1_3:10310770-10310789 | None:intergenic | 40.0% |
| !! | GGAATGAGTTTTGGTGAGTT+CGG | + | chr1_3:10310830-10310849 | None:intergenic | 40.0% |
| GTTCCCATATTGAAGAGAGA+GGG | + | chr1_3:10310929-10310948 | None:intergenic | 40.0% | |
| TCCAAGCTTCAAGATATCTG+CGG | + | chr1_3:10310973-10310992 | None:intergenic | 40.0% | |
| !!! | TTTTTTTTTTGTGGTGGCCG+GGG | + | chr1_3:10311482-10311501 | None:intergenic | 40.0% |
| ! | GTACTCATTTAGAATCACGG+TGG | - | chr1_3:10311522-10311541 | Msa0103190:CDS | 40.0% |
| GTTTGGCTAATGCTCCAAAT+TGG | - | chr1_3:10311563-10311582 | Msa0103190:CDS | 40.0% | |
| GTTGTGATGATTCGTGTTTG+TGG | - | chr1_3:10311933-10311952 | Msa0103190:intron | 40.0% | |
| TTCGTGTTTGTGGTGAATTG+TGG | - | chr1_3:10311943-10311962 | Msa0103190:intron | 40.0% | |
| CCATTTGTGGAGAATTGTTG+GGG | - | chr1_3:10312064-10312083 | Msa0103190:intron | 40.0% | |
| GTTGGGGATTTCACTATCTA+AGG | - | chr1_3:10312080-10312099 | Msa0103190:intron | 40.0% | |
| AGAGAATGAGTGCACATGAA+TGG | - | chr1_3:10312762-10312781 | Msa0103190:intron | 40.0% | |
| TTCTCTCACAAGAGTCAGTT+AGG | - | chr1_3:10312805-10312824 | Msa0103190:CDS | 40.0% | |
| GAATGTGTTCTGCATCAAGA+AGG | - | chr1_3:10313225-10313244 | Msa0103190:intron | 40.0% | |
| ! | AAGCATGTGTTTTGCTCCAT+TGG | - | chr1_3:10313806-10313825 | Msa0103190:intron | 40.0% |
| ATGCTAGTTGGCAAAGTCTT+TGG | + | chr1_3:10313843-10313862 | None:intergenic | 40.0% | |
| GTTGTGACCAATCACTACAT+TGG | + | chr1_3:10313914-10313933 | None:intergenic | 40.0% | |
| ACGAAATACAACACAACCAG+AGG | + | chr1_3:10314077-10314096 | None:intergenic | 40.0% | |
| ! | TGAGACTTTGCTGCATTGAT+TGG | - | chr1_3:10314110-10314129 | Msa0103190:CDS | 40.0% |
| CTTCCCAATAATCTGCTACT+TGG | + | chr1_3:10314452-10314471 | None:intergenic | 40.0% | |
| TCCATTCGAAGTGCAAATCT+TGG | - | chr1_3:10314873-10314892 | Msa0103190:intron | 40.0% | |
| CCATTCGAAGTGCAAATCTT+GGG | - | chr1_3:10314874-10314893 | Msa0103190:intron | 40.0% | |
| !! | TTGGGTTGAAAGAGCTATTC+AGG | - | chr1_3:10314892-10314911 | Msa0103190:intron | 40.0% |
| ATGTAGGGATACTAAGCCAA+TGG | - | chr1_3:10315043-10315062 | Msa0103190:intron | 40.0% | |
| !!! | CCGTTTCTTTTTTGAGGTCT+TGG | + | chr1_3:10315138-10315157 | None:intergenic | 40.0% |
| TGCTTACCATAACATCACAG+AGG | + | chr1_3:10315277-10315296 | None:intergenic | 40.0% | |
| ACCCTTTCGTTAATCTTTGG+AGG | - | chr1_3:10315356-10315375 | Msa0103190:intron | 40.0% | |
| !! | ATATACTCAGGTTGAAGGCT+TGG | - | chr1_3:10315600-10315619 | Msa0103190:intron | 40.0% |
| ATAATTCATCCGACAGGAAG+AGG | + | chr1_3:10315785-10315804 | None:intergenic | 40.0% | |
| !!! | GAAAAGAGTGCTTTTGACAC+GGG | - | chr1_3:10315841-10315860 | Msa0103190:intron | 40.0% |
| TCAAGGAACTCTTATGGAGT+AGG | - | chr1_3:10316046-10316065 | Msa0103190:CDS | 40.0% | |
| ACAGCAAAGACAAACTTTCC+AGG | + | chr1_3:10316172-10316191 | None:intergenic | 40.0% | |
| ATGCAAAAAATGAGCTAGGG+AGG | + | chr1_3:10316238-10316257 | None:intergenic | 40.0% | |
| !!! | TCCCTAGCTCATTTTTTGCA+TGG | - | chr1_3:10316237-10316256 | Msa0103190:intron | 40.0% |
| CACCATGCAAAAAATGAGCT+AGG | + | chr1_3:10316242-10316261 | None:intergenic | 40.0% | |
| !!! | CTAGCTCATTTTTTGCATGG+TGG | - | chr1_3:10316240-10316259 | Msa0103190:intron | 40.0% |
| GATGCACAAAATGCAATGGA+AGG | - | chr1_3:10316387-10316406 | Msa0103190:intron | 40.0% | |
| ATAGCCTCTTCAGTTGAAAG+TGG | + | chr1_3:10316425-10316444 | None:intergenic | 40.0% | |
| TGGACTGTCACCAACTTTAT+TGG | - | chr1_3:10316516-10316535 | Msa0103190:intron | 40.0% | |
| GGACTGTCACCAACTTTATT+GGG | - | chr1_3:10316517-10316536 | Msa0103190:intron | 40.0% | |
| ! | AGGGAATTCGTTTGGCTTAA+CGG | + | chr1_3:10316700-10316719 | None:intergenic | 40.0% |
| GGTGAAAAAGGGAATTCGTT+TGG | + | chr1_3:10316708-10316727 | None:intergenic | 40.0% | |
| GTATTGTGCCTGTCATATTC+AGG | - | chr1_3:10316828-10316847 | Msa0103190:intron | 40.0% | |
| CTGTACTGCATTATGGTACT+GGG | + | chr1_3:10316857-10316876 | None:intergenic | 40.0% | |
| TCTGTACTGCATTATGGTAC+TGG | + | chr1_3:10316858-10316877 | None:intergenic | 40.0% | |
| CGAACTTCTGTACTGCATTA+TGG | + | chr1_3:10316864-10316883 | None:intergenic | 40.0% | |
| TCGTCTGCGGTTTAATGTAA+TGG | - | chr1_3:10317114-10317133 | Msa0103190:CDS | 40.0% | |
| GAAGTGATGTATACCACATC+AGG | - | chr1_3:10317226-10317245 | Msa0103190:CDS | 40.0% | |
| TCTTCAAGTAATCCCTGATG+TGG | + | chr1_3:10317242-10317261 | None:intergenic | 40.0% | |
| AAAAGCTAACAATGGCTGAG+TGG | + | chr1_3:10317366-10317385 | None:intergenic | 40.0% | |
| !!! | ACTCAGCCATTGTTAGCTTT+TGG | - | chr1_3:10317365-10317384 | Msa0103190:five_prime_UTR | 40.0% |
| ! | GTGACGAAGTGGATTTCTAG+AGG | + | chr1_3:10310720-10310739 | None:intergenic | 45.0% |
| ACGAGTTAGGTGAGTGAACT+CGG | + | chr1_3:10310757-10310776 | None:intergenic | 45.0% | |
| !! | TGAGTTTTGGTGAGTTCGGA+CGG | + | chr1_3:10310826-10310845 | None:intergenic | 45.0% |
| CCATATTGAAGAGAGAGGGA+GGG | + | chr1_3:10310925-10310944 | None:intergenic | 45.0% | |
| CCTCCCTCTCTCTTCAATAT+GGG | - | chr1_3:10310923-10310942 | Msa0103190:three_prime_UTR | 45.0% | |
| GGTTCCCATATTGAAGAGAG+AGG | + | chr1_3:10310930-10310949 | None:intergenic | 45.0% | |
| TCCGCAGATATCTTGAAGCT+TGG | - | chr1_3:10310969-10310988 | Msa0103190:three_prime_UTR | 45.0% | |
| TGTGAACAAGGATGCAATCC+CGG | - | chr1_3:10311035-10311054 | Msa0103190:three_prime_UTR | 45.0% | |
| ATGCAATCCCGGTTTCGATA+AGG | - | chr1_3:10311046-10311065 | Msa0103190:three_prime_UTR | 45.0% | |
| CTCATGAGGACCGTTCTAAT+TGG | + | chr1_3:10311400-10311419 | None:intergenic | 45.0% | |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | - | chr1_3:10311416-10311435 | Msa0103190:intron | 45.0% |
| TAGCCAAACGCACAATAGGT+GGG | + | chr1_3:10311552-10311571 | None:intergenic | 45.0% | |
| TTAGCCAAACGCACAATAGG+TGG | + | chr1_3:10311553-10311572 | None:intergenic | 45.0% | |
| GCATTAGCCAAACGCACAAT+AGG | + | chr1_3:10311556-10311575 | None:intergenic | 45.0% | |
| CTCAACTATGAGTTCGATCG+AGG | + | chr1_3:10311742-10311761 | None:intergenic | 45.0% | |
| GTTTGTGGTGAATTGTGGAC+AGG | - | chr1_3:10311948-10311967 | Msa0103190:intron | 45.0% | |
| ! | TGGACAGGTTGAACCGTATT+TGG | - | chr1_3:10311963-10311982 | Msa0103190:intron | 45.0% |
| CCCCAACAATTCTCCACAAA+TGG | + | chr1_3:10312067-10312086 | None:intergenic | 45.0% | |
| ! | ACATGTGATGGTGAAACTGC+CGG | - | chr1_3:10312879-10312898 | Msa0103190:CDS | 45.0% |
| AATGCTGCCAACATAAGGAC+TGG | - | chr1_3:10313426-10313445 | Msa0103190:intron | 45.0% | |
| AGGAGCTCCAATGTAGTGAT+TGG | - | chr1_3:10313904-10313923 | Msa0103190:intron | 45.0% | |
| ! | GTCATCTGGTCTTCTGTAAG+AGG | + | chr1_3:10313939-10313958 | None:intergenic | 45.0% |
| CCATAGCTGCATATGTCATC+TGG | + | chr1_3:10313953-10313972 | None:intergenic | 45.0% | |
| CCAGATGACATATGCAGCTA+TGG | - | chr1_3:10313950-10313969 | Msa0103190:intron | 45.0% | |
| ATGGATGCTCATTGCTTGCT+CGG | - | chr1_3:10313969-10313988 | Msa0103190:intron | 45.0% | |
| CTGGACAAACTATAGACCTC+TGG | - | chr1_3:10314058-10314077 | Msa0103190:CDS | 45.0% | |
| CCCAAGATTTGCACTTCGAA+TGG | + | chr1_3:10314877-10314896 | None:intergenic | 45.0% | |
| TTCAGGTGATACCTTCAGCA+GGG | - | chr1_3:10315000-10315019 | Msa0103190:intron | 45.0% | |
| ! | TCTCTGGGAAGCCCATTAAT+TGG | + | chr1_3:10315173-10315192 | None:intergenic | 45.0% |
| GAGAACTTTGATGAGTGGCA+AGG | - | chr1_3:10315203-10315222 | Msa0103190:intron | 45.0% | |
| AACTATTGGATCCCAAGGTG+CGG | + | chr1_3:10315231-10315250 | None:intergenic | 45.0% | |
| CACCTTGGGATCCAATAGTT+GGG | - | chr1_3:10315231-10315250 | Msa0103190:intron | 45.0% | |
| ACCTTGGGATCCAATAGTTG+GGG | - | chr1_3:10315232-10315251 | Msa0103190:intron | 45.0% | |
| TATCCATCTCCCCCAACTAT+TGG | + | chr1_3:10315245-10315264 | None:intergenic | 45.0% | |
| ! | GGTTCAGGCTTCTTTGAAGA+AGG | + | chr1_3:10315664-10315683 | None:intergenic | 45.0% |
| CTTCAAAGAAGCCTGAACCA+AGG | - | chr1_3:10315665-10315684 | Msa0103190:intron | 45.0% | |
| AATGTGCTCCCTGCTCATAA+CGG | - | chr1_3:10316100-10316119 | Msa0103190:intron | 45.0% | |
| ! | GAAGCCACTTTCAACTGAAG+AGG | - | chr1_3:10316418-10316437 | Msa0103190:intron | 45.0% |
| AGAGGCTATTGAAGCTGCAA+AGG | - | chr1_3:10316436-10316455 | Msa0103190:intron | 45.0% | |
| GAGGCTATTGAAGCTGCAAA+GGG | - | chr1_3:10316437-10316456 | Msa0103190:intron | 45.0% | |
| CTGTCACCAACTTTATTGGG+AGG | - | chr1_3:10316520-10316539 | Msa0103190:intron | 45.0% | |
| CAACTCGCAACAAACTGAAC+AGG | + | chr1_3:10316555-10316574 | None:intergenic | 45.0% | |
| AAGGATGTGCACGTGAGTAA+TGG | - | chr1_3:10316926-10316945 | Msa0103190:intron | 45.0% | |
| AAGGATGTGCACGTGAGTAA+TGG | - | chr1_3:10316926-10316945 | Msa0103190:intron | 45.0% | |
| CAGCAACAACAGTTGAGAGA+AGG | + | chr1_3:10317173-10317192 | None:intergenic | 45.0% | |
| TCGGTGGATCCATGTTGAAG+AGG | + | chr1_3:10310689-10310708 | None:intergenic | 50.0% | |
| !! | TCTAGAGGTTTCTGGTTCGG+TGG | + | chr1_3:10310705-10310724 | None:intergenic | 50.0% |
| CGAGTTAGGTGAGTGAACTC+GGG | + | chr1_3:10310756-10310775 | None:intergenic | 50.0% | |
| ! | GACGAGGGAGGTTTGAGTTA+GGG | + | chr1_3:10310781-10310800 | None:intergenic | 50.0% |
| CTAACTCAAACCTCCCTCGT+CGG | - | chr1_3:10310780-10310799 | Msa0103190:three_prime_UTR | 50.0% | |
| !! | GAGTTTTGGTGAGTTCGGAC+GGG | + | chr1_3:10310825-10310844 | None:intergenic | 50.0% |
| ! | AGACGGTGGGGAATGAGTTT+TGG | + | chr1_3:10310839-10310858 | None:intergenic | 50.0% |
| ATTTGGAGGAGTGAGACGGT+GGG | + | chr1_3:10310852-10310871 | None:intergenic | 50.0% | |
| CTCCAAATCGCGTGTCAACT+CGG | - | chr1_3:10310864-10310883 | Msa0103190:three_prime_UTR | 50.0% | |
| AAGAGAGAGGGAGGGAGATA+AGG | + | chr1_3:10310917-10310936 | None:intergenic | 50.0% | |
| CCCTCCCTCTCTCTTCAATA+TGG | - | chr1_3:10310922-10310941 | Msa0103190:three_prime_UTR | 50.0% | |
| CCCATATTGAAGAGAGAGGG+AGG | + | chr1_3:10310926-10310945 | None:intergenic | 50.0% | |
| GAAACCAGCATTTCTCGGAG+AGG | + | chr1_3:10310951-10310970 | None:intergenic | 50.0% | |
| CTGCGGAAACCAGCATTTCT+CGG | + | chr1_3:10310956-10310975 | None:intergenic | 50.0% | |
| CCAACTGAGCTAAGCTCATG+AGG | + | chr1_3:10311414-10311433 | None:intergenic | 50.0% | |
| CCTCATGAGCTTAGCTCAGT+TGG | - | chr1_3:10311411-10311430 | Msa0103190:intron | 50.0% | |
| TACCCCACCTATTGTGCGTT+TGG | - | chr1_3:10311546-10311565 | Msa0103190:CDS | 50.0% | |
| AGCCAAACGCACAATAGGTG+GGG | + | chr1_3:10311551-10311570 | None:intergenic | 50.0% | |
| GTATACATTCTCGCGTCCCA+AGG | + | chr1_3:10311616-10311635 | None:intergenic | 50.0% | |
| AGTCGGTCACTATTCAGACC+TGG | + | chr1_3:10313027-10313046 | None:intergenic | 50.0% | |
| CTGAATAGTGACCGACTGCA+AGG | - | chr1_3:10313030-10313049 | Msa0103190:CDS | 50.0% | |
| ATTCTACGCTGCAGGAGAGT+TGG | - | chr1_3:10314830-10314849 | Msa0103190:intron | 50.0% | |
| GTTCAGGTGATACCTTCAGC+AGG | - | chr1_3:10314999-10315018 | Msa0103190:intron | 50.0% | |
| TCAGGTGATACCTTCAGCAG+GGG | - | chr1_3:10315001-10315020 | Msa0103190:intron | 50.0% | |
| GCACCTTGGGATCCAATAGT+TGG | - | chr1_3:10315230-10315249 | Msa0103190:intron | 50.0% | |
| CCTTGGGATCCAATAGTTGG+GGG | - | chr1_3:10315233-10315252 | Msa0103190:intron | 50.0% | |
| GATCCAATAGTTGGGGGAGA+TGG | - | chr1_3:10315239-10315258 | Msa0103190:intron | 50.0% | |
| ATGTGCTCCCTGCTCATAAC+GGG | - | chr1_3:10316101-10316120 | Msa0103190:intron | 50.0% | |
| ACTCTAGCCCGTTATGAGCA+GGG | + | chr1_3:10316111-10316130 | None:intergenic | 50.0% | |
| AACTCTAGCCCGTTATGAGC+AGG | + | chr1_3:10316112-10316131 | None:intergenic | 50.0% | |
| CTGGGTTCCCTGAATATGAC+AGG | + | chr1_3:10316839-10316858 | None:intergenic | 50.0% | |
| GTGAGTGAACTCGGGTGAGT+CGG | + | chr1_3:10310748-10310767 | None:intergenic | 55.0% | |
| ! | CGACGAGGGAGGTTTGAGTT+AGG | + | chr1_3:10310782-10310801 | None:intergenic | 55.0% |
| ! | AGTTCGGACGGGTTTCCACT+CGG | + | chr1_3:10310814-10310833 | None:intergenic | 55.0% |
| TTTGGAGGAGTGAGACGGTG+GGG | + | chr1_3:10310851-10310870 | None:intergenic | 55.0% | |
| GATTTGGAGGAGTGAGACGG+TGG | + | chr1_3:10310853-10310872 | None:intergenic | 55.0% | |
| ! | CGCGATTTGGAGGAGTGAGA+CGG | + | chr1_3:10310856-10310875 | None:intergenic | 55.0% |
| ! | CGAGTTGACACGCGATTTGG+AGG | + | chr1_3:10310866-10310885 | None:intergenic | 55.0% |
| GGAACCTCTCCGAGAAATGC+TGG | - | chr1_3:10310944-10310963 | Msa0103190:three_prime_UTR | 55.0% | |
| AAAGTCCGGGGTTCAAACCC+CGG | - | chr1_3:10311462-10311481 | Msa0103190:intron | 55.0% | |
| CAGGCAACGGTTACCGAAGA+AGG | - | chr1_3:10314008-10314027 | Msa0103190:intron | 55.0% | |
| TGAATCACTGCCCCTGCTGA+AGG | + | chr1_3:10315014-10315033 | None:intergenic | 55.0% | |
| CCCCCAACTATTGGATCCCA+AGG | + | chr1_3:10315236-10315255 | None:intergenic | 55.0% | |
| ! | AGTCGGTGGTGGTGACGAAG+TGG | + | chr1_3:10310731-10310750 | None:intergenic | 60.0% |
| AGTGAACTCGGGTGAGTCGG+TGG | + | chr1_3:10310745-10310764 | None:intergenic | 60.0% | |
| ! | CGCCGAGTTGACACGCGATT+TGG | + | chr1_3:10310869-10310888 | None:intergenic | 60.0% |
| GGAGGGAGATAAGGTCGAGG+AGG | + | chr1_3:10310908-10310927 | None:intergenic | 60.0% | |
| GAGGGAGGGAGATAAGGTCG+AGG | + | chr1_3:10310911-10310930 | None:intergenic | 60.0% | |
| !! | AGTGGCAAGGTACCGCACCT+TGG | - | chr1_3:10315216-10315235 | Msa0103190:intron | 60.0% |
| !! | GTGGCAAGGTACCGCACCTT+GGG | - | chr1_3:10315217-10315236 | Msa0103190:intron | 60.0% |
| ! | CGGGCTAGAGTTTGAGCCCA+TGG | - | chr1_3:10316120-10316139 | Msa0103190:intron | 60.0% |
| GAACTCGGGTGAGTCGGTGG+TGG | + | chr1_3:10310742-10310761 | None:intergenic | 65.0% | |
| ! | CTCGGCGTCGAGTCCGACGA+GGG | + | chr1_3:10310796-10310815 | None:intergenic | 70.0% |
| ! | ACTCGGCGTCGAGTCCGACG+AGG | + | chr1_3:10310797-10310816 | None:intergenic | 70.0% |
| TCGTCGGACTCGACGCCGAG+TGG | - | chr1_3:10310796-10310815 | Msa0103190:three_prime_UTR | 70.0% | |
| GGTGGCCGGGGTTTGAACCC+CGG | + | chr1_3:10311470-10311489 | None:intergenic | 70.0% | |
| ! | GGCGTCGAGTCCGACGAGGG+AGG | + | chr1_3:10310793-10310812 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 10310618 | 10317442 | 10310618 | ID=Msa0103190;Name=Msa0103190 |
| chr1_3 | mRNA | 10310618 | 10317442 | 10310618 | ID=Msa0103190-mRNA-1;Parent=Msa0103190;Name=Msa0103190-mRNA-1;_AED=0.15;_eAED=0.15;_QI=78|1|1|1|1|1|8|530|513 |
| chr1_3 | exon | 10310618 | 10311210 | 10310618 | ID=Msa0103190-mRNA-1:exon:4316;Parent=Msa0103190-mRNA-1 |
| chr1_3 | exon | 10311519 | 10311722 | 10311519 | ID=Msa0103190-mRNA-1:exon:4315;Parent=Msa0103190-mRNA-1 |
| chr1_3 | exon | 10312123 | 10312246 | 10312123 | ID=Msa0103190-mRNA-1:exon:4314;Parent=Msa0103190-mRNA-1 |
| chr1_3 | exon | 10312374 | 10312450 | 10312374 | ID=Msa0103190-mRNA-1:exon:4313;Parent=Msa0103190-mRNA-1 |
| chr1_3 | exon | 10312771 | 10313216 | 10312771 | ID=Msa0103190-mRNA-1:exon:4312;Parent=Msa0103190-mRNA-1 |
| chr1_3 | exon | 10314031 | 10314154 | 10314031 | ID=Msa0103190-mRNA-1:exon:4311;Parent=Msa0103190-mRNA-1 |
| chr1_3 | exon | 10315959 | 10316090 | 10315959 | ID=Msa0103190-mRNA-1:exon:4310;Parent=Msa0103190-mRNA-1 |
| chr1_3 | exon | 10316993 | 10317442 | 10316993 | ID=Msa0103190-mRNA-1:exon:4309;Parent=Msa0103190-mRNA-1 |
| chr1_3 | five_prime_UTR | 10317365 | 10317442 | 10317365 | ID=Msa0103190-mRNA-1:five_prime_utr;Parent=Msa0103190-mRNA-1 |
| chr1_3 | CDS | 10316993 | 10317364 | 10316993 | ID=Msa0103190-mRNA-1:cds;Parent=Msa0103190-mRNA-1 |
| chr1_3 | CDS | 10315959 | 10316090 | 10315959 | ID=Msa0103190-mRNA-1:cds;Parent=Msa0103190-mRNA-1 |
| chr1_3 | CDS | 10314031 | 10314154 | 10314031 | ID=Msa0103190-mRNA-1:cds;Parent=Msa0103190-mRNA-1 |
| chr1_3 | CDS | 10312771 | 10313216 | 10312771 | ID=Msa0103190-mRNA-1:cds;Parent=Msa0103190-mRNA-1 |
| chr1_3 | CDS | 10312374 | 10312450 | 10312374 | ID=Msa0103190-mRNA-1:cds;Parent=Msa0103190-mRNA-1 |
| chr1_3 | CDS | 10312123 | 10312246 | 10312123 | ID=Msa0103190-mRNA-1:cds;Parent=Msa0103190-mRNA-1 |
| chr1_3 | CDS | 10311519 | 10311722 | 10311519 | ID=Msa0103190-mRNA-1:cds;Parent=Msa0103190-mRNA-1 |
| chr1_3 | CDS | 10311148 | 10311210 | 10311148 | ID=Msa0103190-mRNA-1:cds;Parent=Msa0103190-mRNA-1 |
| chr1_3 | three_prime_UTR | 10310618 | 10311147 | 10310618 | ID=Msa0103190-mRNA-1:three_prime_utr;Parent=Msa0103190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
