AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0195980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0195980 MtrunA17_Chr2g0287341 71.859 199 45 2 21 217 1 190 1.03e-62 199
Msa0195980 MtrunA17_Chr2g0287341 49.333 75 34 2 309 379 126 200 1.01e-11 63.5
Msa0195980 MtrunA17_Chr2g0287321 90.361 83 8 0 297 379 95 177 1.25e-48 162
Msa0195980 MtrunA17_Chr2g0287321 29.630 216 73 5 24 219 13 169 5.84e-18 80.9
Msa0195980 MtrunA17_Chr2g0286581 37.273 220 68 6 23 217 13 187 6.44e-29 111
Msa0195980 MtrunA17_Chr2g0287391 35.149 202 100 8 21 217 1 176 2.75e-15 73.6
Msa0195980 MtrunA17_Chr1g0170131 34.335 233 99 8 23 215 2 220 6.22e-13 67.8
Msa0195980 MtrunA17_Chr2g0287301 53.704 54 23 1 23 74 13 66 6.86e-13 65.9
Msa0195980 MtrunA17_Chr2g0287311 38.636 220 90 5 21 217 11 208 9.13e-13 67.0
Msa0195980 MtrunA17_Chr2g0287401 33.824 204 80 7 21 217 1 156 4.47e-12 63.9
Msa0195980 MtrunA17_Chr2g0287331 53.846 52 22 1 27 76 3 54 1.45e-11 61.2
Msa0195980 MtrunA17_Chr2g0287331 66.071 56 15 1 216 267 64 119 2.59e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 70 sgRNAs with CRISPR-Local

Find 594 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTAAGGCAGATCAAATTT+TGG 0.261207 2_1:-12947509 Msa0195980:CDS
TCGGTTTCTGAAAGGGAAAT+TGG 0.276146 2_1:-12947479 Msa0195980:CDS
AACTCTCCTCAAAGTTGATA+TGG 0.279492 2_1:-12942205 Msa0195980:CDS
CCGCCGTCATCGCCGTAGTT+AGG 0.290696 2_1:+12948037 None:intergenic
TTTATCTCAAATGCACATTC+TGG 0.290745 2_1:-12947443 Msa0195980:CDS
TGTTTCACTTTGTCTTCATC+TGG 0.292772 2_1:+12942300 None:intergenic
GAGAGAAGATATGCAAATTC+TGG 0.305071 2_1:-12938892 Msa0195980:CDS
GGCTCAGTTGGATAGTGTTT+TGG 0.329190 2_1:-12938952 Msa0195980:CDS
TCAACACCAGCATCTTGTTC+TGG 0.347187 2_1:+12942363 None:intergenic
GAGTATTATCAATTCTATAA+AGG 0.360878 2_1:+12947959 None:intergenic
GATGATTGACGTTGCTCATT+TGG 0.379191 2_1:-12942271 Msa0195980:CDS
CAATCCATCCTCCACAGCTT+GGG 0.389170 2_1:+12942179 None:intergenic
CAGAGTTCTGAATCTCCCTT+TGG 0.401963 2_1:+12938914 None:intergenic
ATTTCGATCAACAGCTCCTC+CGG 0.414271 2_1:+12947982 None:intergenic
CGCCGTCATCGCCGTAGTTA+GGG 0.427219 2_1:+12948038 None:intergenic
GGGTTTCCATATCAACTTTG+AGG 0.427266 2_1:+12942199 None:intergenic
AGAAGAGGAAGAAGAGGAGA+AGG 0.428370 2_1:-12947620 Msa0195980:CDS
AGAGGAAGAAGAGGAAGAAG+AGG 0.429220 2_1:-12947626 Msa0195980:CDS
GAGCCACCTGCTTCATCATC+CGG 0.431808 2_1:+12938970 None:intergenic
AGAGGAAGAAGAGGAGAAGG+AGG 0.456985 2_1:-12947617 Msa0195980:CDS
GTGTCTCAAAAGCTTTCTGC+AGG 0.459684 2_1:-12947407 Msa0195980:intron
TCAATCCATCCTCCACAGCT+TGG 0.467200 2_1:+12942178 None:intergenic
CACGATAAGAATCGAATCAC+TGG 0.470313 2_1:-12948076 Msa0195980:intron
GATGAAGCAGGTGGCTCAGT+TGG 0.476181 2_1:-12938964 Msa0195980:CDS
GAAGATGATGATGATGAAGA+AGG 0.480860 2_1:-12947763 Msa0195980:CDS
CTCTTATTATTATATGAACA+AGG 0.482322 2_1:-12948743 None:intergenic
AGAGAGACAATTGATGATGA+TGG 0.486004 2_1:-12947536 Msa0195980:CDS
TGGATGTTCGGTTTCTGAAA+GGG 0.496222 2_1:-12947486 Msa0195980:CDS
AGAAGATGATGATGAAGAAG+AGG 0.498596 2_1:-12947644 Msa0195980:CDS
TTGATAATACTCTGCAATTG+AGG 0.502997 2_1:-12947948 Msa0195980:CDS
GATGATGATGAAGAAGGAGG+AGG 0.509827 2_1:-12947757 Msa0195980:CDS
GGCGATGACGGCGGAAGAGA+CGG 0.517218 2_1:-12948028 Msa0195980:CDS
TGATGAAGAAGAGGAAGAAG+AGG 0.519145 2_1:-12947635 Msa0195980:CDS
TGAGGTGCGTTTGCAAGTTG+TGG 0.522625 2_1:-12947930 Msa0195980:CDS
GTGGATGTTCGGTTTCTGAA+AGG 0.533998 2_1:-12947487 Msa0195980:CDS
GATGATGATGATGAAGAAGG+AGG 0.534833 2_1:-12947760 Msa0195980:CDS
GAATTTACTTTCTATCAAAG+AGG 0.536200 2_1:-12942235 Msa0195980:CDS
TTTCGATCAACAGCTCCTCC+GGG 0.539714 2_1:+12947983 None:intergenic
GACGGCGGAGTCACCGATCT+CGG 0.540182 2_1:-12948010 Msa0195980:CDS
GTCACCGATCTCGGTAGTCC+CGG 0.540650 2_1:-12948001 Msa0195980:CDS
AGCTTAGCCAACTCGTTCAT+CGG 0.543217 2_1:+12947583 None:intergenic
GACGAATGCAGCTGCTCGGT+GGG 0.543604 2_1:-12939018 Msa0195980:CDS
GACCCTAACTACGGCGATGA+CGG 0.547640 2_1:-12948040 Msa0195980:CDS
GAGATTGCTTGGTATGCCAA+AGG 0.549697 2_1:-12938930 Msa0195980:CDS
GAGGAACGCAGCTGCTCGGT+GGG 0.549703 2_1:-12939048 Msa0195980:CDS
GCTGCTCGGTGGGATAATCT+TGG 0.550634 2_1:-12939008 Msa0195980:CDS
GAAACCCAAGCTGTGGAGGA+TGG 0.553602 2_1:-12942183 Msa0195980:CDS
GATGATGATGGCAGTTGCTA+AGG 0.561376 2_1:-12947524 Msa0195980:CDS
CTCAATACCGACCCTAACTA+CGG 0.566415 2_1:-12948049 Msa0195980:CDS
AGATTGCTTGGTATGCCAAA+GGG 0.572586 2_1:-12938929 Msa0195980:CDS
TGTTGAGGAACGCAGCTGCT+CGG 0.577092 2_1:-12939052 Msa0195980:intron
CATCATCCAGAACAAGATGC+TGG 0.583270 2_1:-12942369 Msa0195980:CDS
TCCTCCGGGACTACCGAGAT+CGG 0.585220 2_1:+12947997 None:intergenic
TGAGGAACGCAGCTGCTCGG+TGG 0.585236 2_1:-12939049 Msa0195980:intron
ATCTCAAATGCACATTCTGG+AGG 0.586032 2_1:-12947440 Msa0195980:CDS
ATGAAGACAAAGTGAAACAA+TGG 0.590534 2_1:-12942296 Msa0195980:CDS
AGTTGACGAATGCAGCTGCT+CGG 0.603927 2_1:-12939022 Msa0195980:CDS
TGACGAATGCAGCTGCTCGG+TGG 0.611502 2_1:-12939019 Msa0195980:CDS
ACAATTGCCGATGAACGAGT+TGG 0.627265 2_1:-12947590 Msa0195980:CDS
TGATATGGAAACCCAAGCTG+TGG 0.630518 2_1:-12942190 Msa0195980:CDS
AGAAGATATGCAAATTCTGG+AGG 0.632564 2_1:-12938889 Msa0195980:CDS
GATGACGATGATGATGAAGA+TGG 0.633409 2_1:-12947673 Msa0195980:CDS
CCTAACTACGGCGATGACGG+CGG 0.643219 2_1:-12948037 Msa0195980:CDS
ACGATAAGAATCGAATCACT+GGG 0.643518 2_1:-12948075 Msa0195980:intron
TATGGAAACCCAAGCTGTGG+AGG 0.654505 2_1:-12942187 Msa0195980:CDS
GTCATCGCCGTAGTTAGGGT+CGG 0.674505 2_1:+12948042 None:intergenic
ACCGATCTCGGTAGTCCCGG+AGG 0.677550 2_1:-12947998 Msa0195980:CDS
GATGACGGCGGAAGAGACGG+CGG 0.679894 2_1:-12948025 Msa0195980:CDS
AAACCGGATGATGAAGCAGG+TGG 0.688078 2_1:-12938973 Msa0195980:CDS
ATAAGAATCGAATCACTGGG+AGG 0.742833 2_1:-12948072 Msa0195980:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTTTTATTTTTTT+TGG + chr2_1:12939175-12939194 None:intergenic 0.0%
!! ATAAAAAATAAAAATATGCA+AGG - chr2_1:12939125-12939144 Msa0195980:intron 10.0%
!!! ATTTTTTTTATTTTTTTTGG+TGG + chr2_1:12939279-12939298 None:intergenic 10.0%
!!! TTTGTATTTTTTTTTTTTTG+TGG + chr2_1:12939374-12939393 None:intergenic 10.0%
!! TATTTGATTATTAACTAATA+TGG - chr2_1:12940248-12940267 Msa0195980:intron 10.0%
!! TTAAAAAAACAAGATTAAAT+AGG + chr2_1:12942599-12942618 None:intergenic 10.0%
!!! AAAAAATAGATTTTTTGTAT+AGG - chr2_1:12942976-12942995 Msa0195980:intron 10.0%
!!! AAAAAAAGTGATTTTTATTA+TGG - chr2_1:12943090-12943109 Msa0195980:intron 10.0%
!!! TTTTTTTTTGCTTATAATTT+TGG - chr2_1:12943237-12943256 Msa0195980:intron 10.0%
!! TATATACATGTTATTAAAAA+AGG - chr2_1:12947468-12947487 Msa0195980:CDS 10.0%
!!! TTTGATAAATGTTTTTTTAA+AGG - chr2_1:12947862-12947881 Msa0195980:intron 10.0%
!!! ATGGATTTTTTTTTTTTTTT+GGG + chr2_1:12948187-12948206 None:intergenic 10.0%
!!! TATGGATTTTTTTTTTTTTT+TGG + chr2_1:12948188-12948207 None:intergenic 10.0%
!!! TTTTTTTATTTTTTTTGTGG+TGG + chr2_1:12939170-12939189 None:intergenic 15.0%
!! TTGAAATATATAGAAAACAT+AGG + chr2_1:12940471-12940490 None:intergenic 15.0%
!! TGAAAACATTATTATAAGTA+AGG - chr2_1:12940562-12940581 Msa0195980:intron 15.0%
!! GAAAACATTATTATAAGTAA+GGG - chr2_1:12940563-12940582 Msa0195980:intron 15.0%
!! AAAACATTATTATAAGTAAG+GGG - chr2_1:12940564-12940583 Msa0195980:intron 15.0%
!!! TCTCTTTAAAAAAAAATAGA+AGG + chr2_1:12940747-12940766 None:intergenic 15.0%
!!! TTTTTTTTTAAAGAGAAAAC+AGG - chr2_1:12940751-12940770 Msa0195980:intron 15.0%
!! AAAACTAAAACATAAGAATT+TGG + chr2_1:12942787-12942806 None:intergenic 15.0%
!! TAAAAAAAAGCTATAACAAA+CGG + chr2_1:12942818-12942837 None:intergenic 15.0%
!! AAAAAAATCACACTTATTAA+GGG + chr2_1:12943221-12943240 None:intergenic 15.0%
!! AAAAAAAATCACACTTATTA+AGG + chr2_1:12943222-12943241 None:intergenic 15.0%
!!! TTTTTTTTTAAGGCAAATTT+AGG + chr2_1:12944254-12944273 None:intergenic 15.0%
!!! AATATAACTAGAATTTGTTT+TGG + chr2_1:12944761-12944780 None:intergenic 15.0%
!! ACTAACATATTATTCATTTA+AGG + chr2_1:12946083-12946102 None:intergenic 15.0%
!! TCAATAAATTTCATTATGTT+TGG - chr2_1:12946349-12946368 Msa0195980:intron 15.0%
!! AAATAGACATTTAAAAAATC+TGG + chr2_1:12946474-12946493 None:intergenic 15.0%
!!! AAAATTCATTTAACTTTCAT+TGG - chr2_1:12947492-12947511 Msa0195980:CDS 15.0%
!! ATGTTTATAAGAGAATATTA+TGG - chr2_1:12947781-12947800 Msa0195980:CDS 15.0%
!! TGTTTATAAGAGAATATTAT+GGG - chr2_1:12947782-12947801 Msa0195980:CDS 15.0%
!! AAAAATGAAATAAAAATTGG+AGG - chr2_1:12948093-12948112 Msa0195980:intron 15.0%
!!! TTTTTTTTTTTGGGATTTTA+GGG + chr2_1:12948178-12948197 None:intergenic 15.0%
!!! TTTTTTTTTTTTGGGATTTT+AGG + chr2_1:12948179-12948198 None:intergenic 15.0%
!! TTAAATCCTTCATAATCATA+AGG - chr2_1:12938929-12938948 Msa0195980:CDS 20.0%
!! TTAATACCTTATGATTATGA+AGG + chr2_1:12938938-12938957 None:intergenic 20.0%
!!! TCATAATCATAAGGTATTAA+CGG - chr2_1:12938938-12938957 Msa0195980:CDS 20.0%
!! AAAATGATTTATTAATCTCG+TGG + chr2_1:12939008-12939027 None:intergenic 20.0%
!!! AATCATTTTTTCCTTTTTTG+AGG - chr2_1:12939019-12939038 Msa0195980:CDS 20.0%
!!! ATCATTTTTTCCTTTTTTGA+GGG - chr2_1:12939020-12939039 Msa0195980:CDS 20.0%
!!! TTATACATTTTTTTAACGCA+AGG - chr2_1:12939231-12939250 Msa0195980:intron 20.0%
!!! TTTTTTATTTTTTTTGGTGG+TGG + chr2_1:12939276-12939295 None:intergenic 20.0%
!!! TATACATTTTTTTTAACGCA+AGG - chr2_1:12939326-12939345 Msa0195980:intron 20.0%
!!! GTATTTTTTTTTTTTTGTGG+TGG + chr2_1:12939371-12939390 None:intergenic 20.0%
!! GAGTATTATCAATTCTATAA+AGG + chr2_1:12939589-12939608 None:intergenic 20.0%
!! TTGTTAAATGATTATGTTTC+TGG - chr2_1:12940497-12940516 Msa0195980:intron 20.0%
!!! AAAAAGTGTTAAGATATATG+TGG - chr2_1:12941368-12941387 Msa0195980:intron 20.0%
!!! GAAGATATTAGAATTTTTGT+TGG - chr2_1:12941955-12941974 Msa0195980:intron 20.0%
!!! GTCTTTTTTGCTTATATTAT+GGG + chr2_1:12942566-12942585 None:intergenic 20.0%
!!! TGTCTTTTTTGCTTATATTA+TGG + chr2_1:12942567-12942586 None:intergenic 20.0%
!!! GAATAAACAAAAGTTTTTCT+TGG + chr2_1:12942634-12942653 None:intergenic 20.0%
!!! AAACAATTTTCATTGACTAT+TGG + chr2_1:12942714-12942733 None:intergenic 20.0%
!!! TTCTTTGAAAAAAGTTTCAT+TGG + chr2_1:12942746-12942765 None:intergenic 20.0%
!! AAAAAAAAGCTATAACAAAC+GGG + chr2_1:12942817-12942836 None:intergenic 20.0%
!!! AACAAATAATCTAGTTTGTT+TGG + chr2_1:12943068-12943087 None:intergenic 20.0%
!!! TTTTTGCTTATAATTTTGGA+CGG - chr2_1:12943241-12943260 Msa0195980:intron 20.0%
!! ATTAATATGTTAATGAAGAG+AGG - chr2_1:12943301-12943320 Msa0195980:intron 20.0%
!! TTAATTCTTGACATTAAACA+TGG + chr2_1:12943467-12943486 None:intergenic 20.0%
!!! ATTGTGTTTTATCTGAATTA+GGG - chr2_1:12943519-12943538 Msa0195980:intron 20.0%
!! AATAGATTTATGGAAAAAGT+CGG + chr2_1:12943662-12943681 None:intergenic 20.0%
!!! CTTTTTCCATAAATCTATTA+TGG - chr2_1:12943663-12943682 Msa0195980:intron 20.0%
!! AATGCTTGAAATTAAGTTAA+AGG + chr2_1:12943871-12943890 None:intergenic 20.0%
!! TCATATACAAATTGATCAAA+AGG - chr2_1:12944067-12944086 Msa0195980:intron 20.0%
!! CATAAATGATGTGAAAAAAA+AGG - chr2_1:12944091-12944110 Msa0195980:intron 20.0%
!! TTGCCTTAAAAAAAAAATCA+AGG - chr2_1:12944258-12944277 Msa0195980:intron 20.0%
!!! TGACCTTGATTTTTTTTTTA+AGG + chr2_1:12944264-12944283 None:intergenic 20.0%
!!! TTATTAGCGTATTTTCTTTT+TGG + chr2_1:12944519-12944538 None:intergenic 20.0%
!! TGCAATAAATCATATTGTTA+GGG + chr2_1:12944682-12944701 None:intergenic 20.0%
!! ATGCAATAAATCATATTGTT+AGG + chr2_1:12944683-12944702 None:intergenic 20.0%
!! GAAAAAAAAACCATCAAAAT+CGG - chr2_1:12944806-12944825 Msa0195980:intron 20.0%
!!! TTTTCTTTTTTTGGGTTTTA+GGG + chr2_1:12944912-12944931 None:intergenic 20.0%
!!! ATTTTCTTTTTTTGGGTTTT+AGG + chr2_1:12944913-12944932 None:intergenic 20.0%
!!! TTCGATGATTTTCTTTTTTT+GGG + chr2_1:12944920-12944939 None:intergenic 20.0%
!!! TTTCGATGATTTTCTTTTTT+TGG + chr2_1:12944921-12944940 None:intergenic 20.0%
!! ATAATTAAAAGGCTAAAAGT+TGG - chr2_1:12945710-12945729 Msa0195980:intron 20.0%
!! AAGAAGATTTAAAAATGGAA+AGG - chr2_1:12945872-12945891 Msa0195980:intron 20.0%
!! ATAATGAAATTTATTGAGAG+TGG + chr2_1:12946346-12946365 None:intergenic 20.0%
!!! ACTCAATCTGATTTTTTATT+AGG + chr2_1:12946874-12946893 None:intergenic 20.0%
!! TTGAACAATTTACAATAAAG+GGG + chr2_1:12947236-12947255 None:intergenic 20.0%
!! CTTGAACAATTTACAATAAA+GGG + chr2_1:12947237-12947256 None:intergenic 20.0%
!! ACTTGAACAATTTACAATAA+AGG + chr2_1:12947238-12947257 None:intergenic 20.0%
!! TTATTAATGCTTATATCCTT+AGG + chr2_1:12947356-12947375 None:intergenic 20.0%
!!! TTTTGGAACTATATTATTCA+TGG - chr2_1:12947405-12947424 Msa0195980:intron 20.0%
!!! TTTGGAACTATATTATTCAT+GGG - chr2_1:12947406-12947425 Msa0195980:intron 20.0%
!!! ATTTTTGTGTTTAGTTAGAA+AGG - chr2_1:12947681-12947700 Msa0195980:CDS 20.0%
!! CATAATCATAAGGTATTAAC+GGG - chr2_1:12938939-12938958 Msa0195980:CDS 25.0%
!! TAATGATTTTCCCTCAAAAA+AGG + chr2_1:12939033-12939052 None:intergenic 25.0%
! AAATAAAAATATGCAAGGTC+TGG - chr2_1:12939130-12939149 Msa0195980:intron 25.0%
! AATAAAAATATGCAAGGTCT+GGG - chr2_1:12939131-12939150 Msa0195980:intron 25.0%
! AGACAATAATCAATACTAAG+AGG + chr2_1:12940191-12940210 None:intergenic 25.0%
! GAGATAGTTTCTTACTTAAA+TGG - chr2_1:12940345-12940364 Msa0195980:intron 25.0%
! CTTAAATGGTTGTAAATGAA+TGG - chr2_1:12940359-12940378 Msa0195980:intron 25.0%
! ATCAAGAAGAGAAAGTTATA+TGG + chr2_1:12940430-12940449 None:intergenic 25.0%
! ACATATTTGAAAGACTAAGT+TGG - chr2_1:12940631-12940650 Msa0195980:intron 25.0%
! CATATTTGAAAGACTAAGTT+GGG - chr2_1:12940632-12940651 Msa0195980:intron 25.0%
! GAATGAATAGTCATTATTGA+AGG - chr2_1:12940925-12940944 Msa0195980:intron 25.0%
!!! TTTTTAGAATGGTGAGAAAT+GGG - chr2_1:12941092-12941111 Msa0195980:intron 25.0%
! CGTAAATAATTCACAAAAAG+AGG + chr2_1:12941158-12941177 None:intergenic 25.0%
!! CAAAGTTAATAACGTTTTCT+TGG - chr2_1:12941407-12941426 Msa0195980:intron 25.0%
! CAAAATCACAATGCAAAAAA+AGG + chr2_1:12941547-12941566 None:intergenic 25.0%
!!! GTGATTTTGCCTTTAAAATA+TGG - chr2_1:12941558-12941577 Msa0195980:intron 25.0%
!! TGATTTGGCATGTAATATTA+TGG - chr2_1:12941692-12941711 Msa0195980:intron 25.0%
!! TGTGATAATTTTTGCAAATG+AGG - chr2_1:12941735-12941754 Msa0195980:intron 25.0%
! GGCTATAAATAATAATGCTA+AGG - chr2_1:12941756-12941775 Msa0195980:intron 25.0%
!!! TAATAATGCTAAGGTTTTGT+TGG - chr2_1:12941765-12941784 Msa0195980:intron 25.0%
!!! TCATGCTTTTTAGCTTTTAT+TGG - chr2_1:12941893-12941912 Msa0195980:intron 25.0%
!!! CATGCTTTTTAGCTTTTATT+GGG - chr2_1:12941894-12941913 Msa0195980:intron 25.0%
!!! ATGCTTTTTAGCTTTTATTG+GGG - chr2_1:12941895-12941914 Msa0195980:intron 25.0%
!! TATAGTTTTTGCTACTGTTA+TGG - chr2_1:12942261-12942280 Msa0195980:CDS 25.0%
!! AATAAAATTTTGTATCTCGC+CGG - chr2_1:12942513-12942532 Msa0195980:intron 25.0%
!! TTTTTGCTTATATTATGGGA+CGG + chr2_1:12942562-12942581 None:intergenic 25.0%
!!! TTTTCATTGACTATTGGTTA+TGG + chr2_1:12942708-12942727 None:intergenic 25.0%
! TGTGAAATGATGAAAAAGAA+TGG - chr2_1:12943352-12943371 Msa0195980:intron 25.0%
!! GATTGTGTTTTATCTGAATT+AGG - chr2_1:12943518-12943537 Msa0195980:intron 25.0%
! TATTAGTGGAACAATTTAAG+AGG + chr2_1:12943588-12943607 None:intergenic 25.0%
! ATGGAAATAAAGTCATGAAT+TGG - chr2_1:12944032-12944051 Msa0195980:intron 25.0%
!!! AAAAAGTACTTGCTTTTTGT+AGG + chr2_1:12944173-12944192 None:intergenic 25.0%
!!! GAAAGACTAGACTTTTAAAA+AGG + chr2_1:12944295-12944314 None:intergenic 25.0%
!! TTGTCTTTAAGAAATGAGAA+GGG + chr2_1:12944618-12944637 None:intergenic 25.0%
!! ATTGTCTTTAAGAAATGAGA+AGG + chr2_1:12944619-12944638 None:intergenic 25.0%
! TATTTCCAAACCATCAAAAT+CGG - chr2_1:12944777-12944796 Msa0195980:intron 25.0%
! GAATTTACTTTCTATCAAAG+AGG - chr2_1:12945310-12945329 Msa0195980:intron 25.0%
! TTAAAATTCGCAAAAAGCTT+CGG + chr2_1:12945400-12945419 None:intergenic 25.0%
! AATCATAACTTATCAAGAAG+AGG + chr2_1:12945544-12945563 None:intergenic 25.0%
! AAGTTATGATTATGCGTTTA+TGG - chr2_1:12945553-12945572 Msa0195980:intron 25.0%
! AATTAGTGTTTATTGCACAA+TGG - chr2_1:12945742-12945761 Msa0195980:intron 25.0%
! ATTAGGTAGACAATTCTATT+CGG - chr2_1:12945849-12945868 Msa0195980:intron 25.0%
! TTCGGAAGAAGATTTAAAAA+TGG - chr2_1:12945867-12945886 Msa0195980:intron 25.0%
! TCAAATTATTGAAGAGAGAT+TGG - chr2_1:12946197-12946216 Msa0195980:intron 25.0%
! GTTAGAACAATTCAAATTGA+TGG - chr2_1:12946223-12946242 Msa0195980:intron 25.0%
! GAAATTTGCATATTCATTCT+TGG + chr2_1:12946251-12946270 None:intergenic 25.0%
! TTTGTAATATCATAGTCCAT+AGG - chr2_1:12946437-12946456 Msa0195980:intron 25.0%
!!! ATGGTCACATTTTAAGTATA+AGG - chr2_1:12946703-12946722 Msa0195980:intron 25.0%
!! TGATTTTGAATACCAGTTTT+AGG - chr2_1:12946802-12946821 Msa0195980:intron 25.0%
! AGATATATCATTCCTAAAAC+TGG + chr2_1:12946817-12946836 None:intergenic 25.0%
!! CTATCTTTTCATTTGTGAAT+TGG - chr2_1:12946842-12946861 Msa0195980:intron 25.0%
!! CTTTCATTGGATTTTCTAAT+CGG - chr2_1:12947505-12947524 Msa0195980:CDS 25.0%
! TACATATTACTTGAATATGC+AGG - chr2_1:12947556-12947575 Msa0195980:CDS 25.0%
!! AGTTTCCTTTTAACCTTTTT+AGG + chr2_1:12948119-12948138 None:intergenic 25.0%
! AAAAATCCATACCTTAACAA+TGG - chr2_1:12948197-12948216 Msa0195980:intron 25.0%
ATAAAAATATGCAAGGTCTG+GGG - chr2_1:12939132-12939151 Msa0195980:intron 30.0%
!!! TTTATTTTTTTTGTGGTGGC+CGG + chr2_1:12939166-12939185 None:intergenic 30.0%
!!! ATTTTTTTTAACGCAAGGTC+CGG - chr2_1:12939331-12939350 Msa0195980:intron 30.0%
!!! TTTTTTTTTTTTGTGGTGGC+CGG + chr2_1:12939367-12939386 None:intergenic 30.0%
! TTGATAATACTCTGCAATTG+AGG - chr2_1:12939597-12939616 Msa0195980:intron 30.0%
TTGTTGATCATGAATTCGTT+AGG - chr2_1:12939648-12939667 Msa0195980:intron 30.0%
!! ATCAAATTTTGGTGGATGTT+CGG - chr2_1:12940047-12940066 Msa0195980:intron 30.0%
TTTATCTCAAATGCACATTC+TGG - chr2_1:12940102-12940121 Msa0195980:intron 30.0%
!! ATCACTTTTACTCTTCATTG+TGG + chr2_1:12940301-12940320 None:intergenic 30.0%
TAACTTTCTCTTCTTGATCT+TGG - chr2_1:12940432-12940451 Msa0195980:intron 30.0%
TGTGTACAATTGAAAGAAGT+AGG - chr2_1:12940591-12940610 Msa0195980:intron 30.0%
GGAAAAGTTGGAAAAAATGA+GGG - chr2_1:12940653-12940672 Msa0195980:intron 30.0%
CTTCAATGGTATTAAAAGCT+AGG + chr2_1:12940723-12940742 None:intergenic 30.0%
!! CTAGCTTTTAATACCATTGA+AGG - chr2_1:12940721-12940740 Msa0195980:intron 30.0%
AAAAAATAGAAGGCCTTCAA+TGG + chr2_1:12940737-12940756 None:intergenic 30.0%
!!! AATTGGTTTTTTCCCTGTTA+GGG + chr2_1:12940807-12940826 None:intergenic 30.0%
!!! TAATTGGTTTTTTCCCTGTT+AGG + chr2_1:12940808-12940827 None:intergenic 30.0%
! TGAATAGTGGAGGATTTAAT+TGG + chr2_1:12940824-12940843 None:intergenic 30.0%
! TTTTAGTCCTTGATGTTGAT+AGG - chr2_1:12940856-12940875 Msa0195980:intron 30.0%
TTTAGTCCTTGATGTTGATA+GGG - chr2_1:12940857-12940876 Msa0195980:intron 30.0%
ATGTAGAGTATATCTTGCAT+AGG - chr2_1:12940966-12940985 Msa0195980:intron 30.0%
TGTAGAGTATATCTTGCATA+GGG - chr2_1:12940967-12940986 Msa0195980:intron 30.0%
AGGAAACGGTATATAACAAT+TGG - chr2_1:12941056-12941075 Msa0195980:intron 30.0%
!!! GTTTTTAGAATGGTGAGAAA+TGG - chr2_1:12941091-12941110 Msa0195980:intron 30.0%
!!! TTTTAGAATGGTGAGAAATG+GGG - chr2_1:12941093-12941112 Msa0195980:intron 30.0%
AATCCCAACAGAAAGTAATT+TGG - chr2_1:12941447-12941466 Msa0195980:intron 30.0%
ACACCAAATTACTTTCTGTT+GGG + chr2_1:12941453-12941472 None:intergenic 30.0%
TACACCAAATTACTTTCTGT+TGG + chr2_1:12941454-12941473 None:intergenic 30.0%
!! CAGAAAGTAATTTGGTGTAT+CGG - chr2_1:12941455-12941474 Msa0195980:intron 30.0%
!! CACTTTGGTCCATATTTTAA+AGG + chr2_1:12941570-12941589 None:intergenic 30.0%
TAGAACAGGACAAACAAATT+TGG + chr2_1:12941626-12941645 None:intergenic 30.0%
AGGGAAAAAGTAAGAAAATC+CGG - chr2_1:12941656-12941675 Msa0195980:intron 30.0%
AAAAAGTAAGAAAATCCGGA+AGG - chr2_1:12941660-12941679 Msa0195980:intron 30.0%
AAAAGTAAGAAAATCCGGAA+GGG - chr2_1:12941661-12941680 Msa0195980:intron 30.0%
! TCTGTTTTATGAATGGTCTT+GGG - chr2_1:12941843-12941862 Msa0195980:intron 30.0%
!! TTGTGTTGTTGCTGAATTTT+AGG - chr2_1:12942031-12942050 Msa0195980:intron 30.0%
!! TGTGTTGTTGCTGAATTTTA+GGG - chr2_1:12942032-12942051 Msa0195980:intron 30.0%
!! TTGCTTTTAGTTAGAGTTGT+TGG - chr2_1:12942320-12942339 Msa0195980:CDS 30.0%
!! TTTTAGTTAGAGTTGTTGGT+TGG - chr2_1:12942324-12942343 Msa0195980:CDS 30.0%
! GTTAGCTACATATTGTTTCT+AGG - chr2_1:12942377-12942396 Msa0195980:CDS 30.0%
CCAAAACACAACCTTTATTA+AGG + chr2_1:12942407-12942426 None:intergenic 30.0%
! CCTTAATAAAGGTTGTGTTT+TGG - chr2_1:12942404-12942423 Msa0195980:intron 30.0%
! ATAAAATTTTGTATCTCGCC+GGG - chr2_1:12942514-12942533 Msa0195980:intron 30.0%
! TATTAAGGGTCTGTTTGTTA+CGG + chr2_1:12943207-12943226 None:intergenic 30.0%
ATGTTAATGAAGAGAGGAAA+AGG - chr2_1:12943307-12943326 Msa0195980:intron 30.0%
! GTATGATGATGTGTATAGAA+GGG + chr2_1:12943400-12943419 None:intergenic 30.0%
! TGTATGATGATGTGTATAGA+AGG + chr2_1:12943401-12943420 None:intergenic 30.0%
ATTAAACATGGACGTTAACT+CGG + chr2_1:12943455-12943474 None:intergenic 30.0%
! AACAGTGAGTTACATTTTGA+TGG - chr2_1:12943550-12943569 Msa0195980:intron 30.0%
!! CATTTTGATGGTTGTTCAAT+AGG - chr2_1:12943562-12943581 Msa0195980:intron 30.0%
CAAAATCACAACTCTATTAG+TGG + chr2_1:12943602-12943621 None:intergenic 30.0%
GAAGGACCATAATAGATTTA+TGG + chr2_1:12943672-12943691 None:intergenic 30.0%
TCTATTATGGTCCTTCATAA+AGG - chr2_1:12943676-12943695 Msa0195980:intron 30.0%
! AATGATTTTACACTCCTGTT+CGG - chr2_1:12943749-12943768 Msa0195980:intron 30.0%
ATTTCCAAACCATCAAAATC+GGG - chr2_1:12944778-12944797 Msa0195980:intron 30.0%
AAATCATCGAAACCTTAAGA+CGG - chr2_1:12944929-12944948 Msa0195980:intron 30.0%
ATTTCGATCATCAGTTCTAT+AGG + chr2_1:12944987-12945006 None:intergenic 30.0%
ATGAAGACAAAGTGAAACAA+TGG - chr2_1:12945249-12945268 Msa0195980:intron 30.0%
TTAAAAGGCTAAAAGTTGGA+AGG - chr2_1:12945714-12945733 Msa0195980:intron 30.0%
! TGCAATACTTTAGAGATTGA+AGG - chr2_1:12945822-12945841 Msa0195980:intron 30.0%
! ATACTTTAGAGATTGAAGGT+AGG - chr2_1:12945826-12945845 Msa0195980:intron 30.0%
AGGTTGGATCAAATTGAATA+TGG - chr2_1:12945948-12945967 Msa0195980:intron 30.0%
TGGATCAAATTGAATATGGA+TGG - chr2_1:12945952-12945971 Msa0195980:intron 30.0%
AAGCAACATTGTAATCGTTA+TGG - chr2_1:12945983-12946002 Msa0195980:intron 30.0%
AATTACACCTGTTAGTAGTA+AGG + chr2_1:12946134-12946153 None:intergenic 30.0%
ACTTGATGAAGAATATATCG+TGG - chr2_1:12946373-12946392 Msa0195980:intron 30.0%
! TAAACTTGATGCGATGTTTT+TGG - chr2_1:12946511-12946530 Msa0195980:intron 30.0%
! TTGGTTAGGATATGATTTTG+TGG - chr2_1:12946558-12946577 Msa0195980:intron 30.0%
! TGGTTAGGATATGATTTTGT+GGG - chr2_1:12946559-12946578 Msa0195980:intron 30.0%
! CAACATCATTCAATTCCTTT+TGG + chr2_1:12946637-12946656 None:intergenic 30.0%
GAATGATGTTGAATGTTATG+TGG - chr2_1:12946646-12946665 Msa0195980:intron 30.0%
! TTATGTGGACTTTTACAGTT+TGG - chr2_1:12946661-12946680 Msa0195980:intron 30.0%
! CTTTTACAGTTTGGAGAATT+TGG - chr2_1:12946670-12946689 Msa0195980:intron 30.0%
TCAAGCTTCAAACTAATTGA+TGG - chr2_1:12946756-12946775 Msa0195980:intron 30.0%
TCAGATTGAGTTTCCAAAAA+AGG - chr2_1:12946883-12946902 Msa0195980:intron 30.0%
CAGATTGAGTTTCCAAAAAA+GGG - chr2_1:12946884-12946903 Msa0195980:intron 30.0%
! ATTTTGTGCTCTTGATTGTT+AGG - chr2_1:12947067-12947086 Msa0195980:intron 30.0%
!! ACTCTTTTGTTTAGACTTGA+AGG - chr2_1:12947197-12947216 Msa0195980:intron 30.0%
!! TTTTGTTTAGACTTGAAGGT+GGG - chr2_1:12947201-12947220 Msa0195980:intron 30.0%
ATAGTGGCATTAGAAAATAC+AGG + chr2_1:12947432-12947451 None:intergenic 30.0%
!!! AGATTTTGATTTGTGCAGTA+TGG - chr2_1:12947528-12947547 Msa0195980:CDS 30.0%
!!! TGTTGATTTTGATTGTCCAT+TGG - chr2_1:12947736-12947755 Msa0195980:CDS 30.0%
CTTGTAAAATCTTTGTCCAA+TGG + chr2_1:12947755-12947774 None:intergenic 30.0%
TAAAAATTGGAGGCCTAAAA+AGG - chr2_1:12948103-12948122 Msa0195980:intron 30.0%
ATTTCGATCATCACTTCTTT+AGG + chr2_1:12948285-12948304 None:intergenic 30.0%
! AATCACAGTTCTACTTGTTA+AGG - chr2_1:12948422-12948441 Msa0195980:intron 30.0%
! GGTTTCAAATCGCAACTTTT+GGG - chr2_1:12938960-12938979 Msa0195980:CDS 35.0%
!!! TTATTTTTTTTGTGGTGGCC+GGG + chr2_1:12939165-12939184 None:intergenic 35.0%
!!! CATTTTTTTAACGCAAGGTC+CGG - chr2_1:12939236-12939255 Msa0195980:intron 35.0%
!!! ATTTTTTTAACGCAAGGTCC+GGG - chr2_1:12939237-12939256 Msa0195980:intron 35.0%
!!! TTATTTTTTTTGGTGGTGGC+CGG + chr2_1:12939272-12939291 None:intergenic 35.0%
!!! TTTTTTTTAACGCAAGGTCC+GGG - chr2_1:12939332-12939351 Msa0195980:intron 35.0%
!!! TTTTTTTTTTTGTGGTGGCC+GGG + chr2_1:12939366-12939385 None:intergenic 35.0%
ACGATAAGAATCGAATCACT+GGG - chr2_1:12939470-12939489 Msa0195980:intron 35.0%
CATTCCCTTTCTATATGCAA+AGG - chr2_1:12939694-12939713 Msa0195980:intron 35.0%
CAGACCTTTGCATATAGAAA+GGG + chr2_1:12939701-12939720 None:intergenic 35.0%
CTTTCTATATGCAAAGGTCT+GGG - chr2_1:12939700-12939719 Msa0195980:intron 35.0%
TCTTCTTCTTCTTCTTCTTG+AGG + chr2_1:12939761-12939780 None:intergenic 35.0%
! GAAGATGATGATGATGAAGA+AGG - chr2_1:12939782-12939801 Msa0195980:intron 35.0%
! AGAAGATGATGATGAAGAAG+AGG - chr2_1:12939901-12939920 Msa0195980:intron 35.0%
!! AGAGAGACAATTGATGATGA+TGG - chr2_1:12940009-12940028 Msa0195980:intron 35.0%
! TGCTAAGGCAGATCAAATTT+TGG - chr2_1:12940036-12940055 Msa0195980:intron 35.0%
! TAAGGCAGATCAAATTTTGG+TGG - chr2_1:12940039-12940058 Msa0195980:intron 35.0%
TACTCAACTGTCATCAGAAT+GGG + chr2_1:12940524-12940543 None:intergenic 35.0%
ATACTCAACTGTCATCAGAA+TGG + chr2_1:12940525-12940544 None:intergenic 35.0%
! AAGACTAAGTTGGGAAAAGT+TGG - chr2_1:12940641-12940660 Msa0195980:intron 35.0%
GGGAAAAGTTGGAAAAAATG+AGG - chr2_1:12940652-12940671 Msa0195980:intron 35.0%
ATATTGCAAAACGAGGGAAA+TGG - chr2_1:12940677-12940696 Msa0195980:intron 35.0%
TATTGCAAAACGAGGGAAAT+GGG - chr2_1:12940678-12940697 Msa0195980:intron 35.0%
ACTAACATAGTGAATAGTGG+AGG + chr2_1:12940834-12940853 None:intergenic 35.0%
ACGACTAACATAGTGAATAG+TGG + chr2_1:12940837-12940856 None:intergenic 35.0%
TAATGTCCCTATCAACATCA+AGG + chr2_1:12940866-12940885 None:intergenic 35.0%
!! TTTTGGCTAAGTGTAGATGA+AGG - chr2_1:12940894-12940913 Msa0195980:intron 35.0%
TATTGAAGGAAGTTCTTGTG+AGG - chr2_1:12940939-12940958 Msa0195980:intron 35.0%
CTTGTCCTTACAATTCTTCT+AGG - chr2_1:12941008-12941027 Msa0195980:intron 35.0%
GAAAGACATTTGTGCTTTAG+AGG - chr2_1:12941036-12941055 Msa0195980:intron 35.0%
!! CATTTGTGCTTTAGAGGAAA+CGG - chr2_1:12941042-12941061 Msa0195980:intron 35.0%
!! GGTATATAACAATTGGTTCG+CGG - chr2_1:12941063-12941082 Msa0195980:intron 35.0%
!! GTATATAACAATTGGTTCGC+GGG - chr2_1:12941064-12941083 Msa0195980:intron 35.0%
!! TATATAACAATTGGTTCGCG+GGG - chr2_1:12941065-12941084 Msa0195980:intron 35.0%
!! TGACTAGTTTATGGAGAGAT+AGG - chr2_1:12941119-12941138 Msa0195980:intron 35.0%
ATGCTATAGTGCAAGATTAG+AGG - chr2_1:12941206-12941225 Msa0195980:intron 35.0%
TGCTATAGTGCAAGATTAGA+GGG - chr2_1:12941207-12941226 Msa0195980:intron 35.0%
GTTATTAACTTTGACAGTGC+TGG + chr2_1:12941400-12941419 None:intergenic 35.0%
! ACCAAAGTGTTTAGTTAGCT+TGG - chr2_1:12941581-12941600 Msa0195980:intron 35.0%
ACCAAGCTAACTAAACACTT+TGG + chr2_1:12941585-12941604 None:intergenic 35.0%
!!! GGTTTTGTTGGATGAGATAA+AGG - chr2_1:12941777-12941796 Msa0195980:intron 35.0%
TTTGTTGGATGAGATAAAGG+TGG - chr2_1:12941780-12941799 Msa0195980:intron 35.0%
ACCATTCATAAAACAGACAC+GGG + chr2_1:12941840-12941859 None:intergenic 35.0%
GACCATTCATAAAACAGACA+CGG + chr2_1:12941841-12941860 None:intergenic 35.0%
! GTCTGTTTTATGAATGGTCT+TGG - chr2_1:12941842-12941861 Msa0195980:intron 35.0%
TAATAAGCAAACAATCCCTC+GGG + chr2_1:12941870-12941889 None:intergenic 35.0%
CTAATAAGCAAACAATCCCT+CGG + chr2_1:12941871-12941890 None:intergenic 35.0%
!!! TTTAGCTTTTATTGGGGACT+TGG - chr2_1:12941901-12941920 Msa0195980:intron 35.0%
!! TTAGCTTTTATTGGGGACTT+GGG - chr2_1:12941902-12941921 Msa0195980:intron 35.0%
TTGATGTGTTCACTGTGTTT+AGG - chr2_1:12942076-12942095 Msa0195980:intron 35.0%
! TGTTCACTGTGTTTAGGTTT+GGG - chr2_1:12942082-12942101 Msa0195980:intron 35.0%
!! GCTACATATTGTTTCTAGGA+TGG - chr2_1:12942381-12942400 Msa0195980:CDS 35.0%
!! TTCTAGGATGGCCTTAATAA+AGG - chr2_1:12942393-12942412 Msa0195980:CDS 35.0%
! TTTCTTTTCCTACTAGATGC+AGG - chr2_1:12942484-12942503 Msa0195980:intron 35.0%
! TTCTTTTCCTACTAGATGCA+GGG - chr2_1:12942485-12942504 Msa0195980:intron 35.0%
TTAACTCGGTCAAAATGATG+TGG + chr2_1:12943441-12943460 None:intergenic 35.0%
ATTTATGGAAAAAGTCGGTC+GGG + chr2_1:12943657-12943676 None:intergenic 35.0%
GATTTATGGAAAAAGTCGGT+CGG + chr2_1:12943658-12943677 None:intergenic 35.0%
ATTATTGTGTCTAACCGAAC+AGG + chr2_1:12943766-12943785 None:intergenic 35.0%
TTGAAATAGCCCTCATATGT+AGG - chr2_1:12944191-12944210 Msa0195980:intron 35.0%
TGAAATAGCCCTCATATGTA+GGG - chr2_1:12944192-12944211 Msa0195980:intron 35.0%
ATTCTCATCCCTACATATGA+GGG + chr2_1:12944203-12944222 None:intergenic 35.0%
TATTCTCATCCCTACATATG+AGG + chr2_1:12944204-12944223 None:intergenic 35.0%
TCATATGTAGGGATGAGAAT+AGG - chr2_1:12944203-12944222 Msa0195980:intron 35.0%
! TTTCTTACACCCGATTTTGA+TGG + chr2_1:12944790-12944809 None:intergenic 35.0%
! GTATTAGGATCCGATTTTGA+TGG + chr2_1:12944819-12944838 None:intergenic 35.0%
TGATGATCGAAATCCTTGTT+AGG - chr2_1:12944994-12945013 Msa0195980:intron 35.0%
GATGATCGAAATCCTTGTTA+GGG - chr2_1:12944995-12945014 Msa0195980:intron 35.0%
! AAGTGCTTCTTCCACATTTT+AGG + chr2_1:12945086-12945105 None:intergenic 35.0%
TGTTTCACTTTGTCTTCATC+TGG + chr2_1:12945248-12945267 None:intergenic 35.0%
!! AACTCTCCTCAAAGTTGATA+TGG - chr2_1:12945340-12945359 Msa0195980:intron 35.0%
AGAGATTGTTCTTGCTCAAA+TGG - chr2_1:12945467-12945486 Msa0195980:intron 35.0%
GCGCAATCACGATAATTAAA+AGG - chr2_1:12945699-12945718 Msa0195980:intron 35.0%
ATTGCACAATGGAGAAAAAG+TGG - chr2_1:12945753-12945772 Msa0195980:intron 35.0%
TAGAGATTGAAGGTAGGATT+AGG - chr2_1:12945832-12945851 Msa0195980:intron 35.0%
AATTTGATCCAACCTAACTC+AGG + chr2_1:12945943-12945962 None:intergenic 35.0%
!!! AGTCATTCATGGTTTTGAGT+TGG - chr2_1:12946029-12946048 Msa0195980:intron 35.0%
ACAGATTCCTTACTACTAAC+AGG - chr2_1:12946124-12946143 Msa0195980:intron 35.0%
CCAATCTCTCTTCAATATGT+TGG + chr2_1:12946163-12946182 None:intergenic 35.0%
CCAACATATTGAAGAGAGAT+TGG - chr2_1:12946160-12946179 Msa0195980:intron 35.0%
AACTGCATTCTCTTCATTCA+TGG - chr2_1:12946314-12946333 Msa0195980:intron 35.0%
!! TCTGGAATTTTCTTCTCCTA+TGG + chr2_1:12946456-12946475 None:intergenic 35.0%
CGCATCAAGTTTACAAAATC+TGG + chr2_1:12946504-12946523 None:intergenic 35.0%
!!! GCGATGTTTTTGGCAAATTA+TGG - chr2_1:12946521-12946540 Msa0195980:intron 35.0%
TGGCAAATTATGGTCTTTGA+TGG - chr2_1:12946531-12946550 Msa0195980:intron 35.0%
CCAAAGTGAATATGATGTTG+TGG + chr2_1:12946597-12946616 None:intergenic 35.0%
CCACAACATCATATTCACTT+TGG - chr2_1:12946594-12946613 Msa0195980:intron 35.0%
!! CATATTCACTTTGGTGCTTT+AGG - chr2_1:12946603-12946622 Msa0195980:intron 35.0%
! CTTTAGGTGGTTTTTCCAAA+AGG - chr2_1:12946619-12946638 Msa0195980:intron 35.0%
! AGAATTTGGTGATAACGCAA+TGG - chr2_1:12946684-12946703 Msa0195980:intron 35.0%
AGTTTCCAAAAAAGGGAAAG+TGG - chr2_1:12946891-12946910 Msa0195980:intron 35.0%
GTTTCCAAAAAAGGGAAAGT+GGG - chr2_1:12946892-12946911 Msa0195980:intron 35.0%
CACATATAGAAGAAGAGAGA+TGG + chr2_1:12946952-12946971 None:intergenic 35.0%
CATCTCTCTTCTTCTATATG+TGG - chr2_1:12946950-12946969 Msa0195980:intron 35.0%
!! TTGTTAGGCTCTGGATTATA+TGG - chr2_1:12947082-12947101 Msa0195980:intron 35.0%
! TATGGATTGCGAATTTCATC+TGG - chr2_1:12947129-12947148 Msa0195980:intron 35.0%
!!! TTTCATCTGGATGGTTTTGA+AGG - chr2_1:12947142-12947161 Msa0195980:intron 35.0%
!! CTTTTGTTTAGACTTGAAGG+TGG - chr2_1:12947200-12947219 Msa0195980:intron 35.0%
AACCAATCTGTATCATTCCA+TGG - chr2_1:12947325-12947344 Msa0195980:intron 35.0%
! ATGTGCATTAAGAGTGGTTT+TGG - chr2_1:12947388-12947407 Msa0195980:intron 35.0%
CAATGTCAAGAAGACTATAG+TGG + chr2_1:12947448-12947467 None:intergenic 35.0%
! TTTTTCCTTATGCTCTTGAC+AGG - chr2_1:12947969-12947988 Msa0195980:CDS 35.0%
! ATATACCTGTCAAGAGCATA+AGG + chr2_1:12947977-12947996 None:intergenic 35.0%
!!! TTGGGATTTTAGGGTTTCAT+GGG + chr2_1:12948169-12948188 None:intergenic 35.0%
!!! TTTGGGATTTTAGGGTTTCA+TGG + chr2_1:12948170-12948189 None:intergenic 35.0%
AATCCATACCTTAACAATGG+CGG - chr2_1:12948200-12948219 Msa0195980:intron 35.0%
TCTTTAGGCAGAATCATGAT+CGG + chr2_1:12948270-12948289 None:intergenic 35.0%
! TGCATGAATCAACTCTAGAA+AGG + chr2_1:12948308-12948327 None:intergenic 35.0%
!! CATGCAATACTCTGAAATTG+AGG - chr2_1:12948322-12948341 Msa0195980:intron 35.0%
! TTGGTGATCAAGAGAAAAAC+CGG - chr2_1:12948556-12948575 Msa0195980:intron 35.0%
!!! ATAGTGTTTTGGAGATTGCT+TGG - chr2_1:12948604-12948623 Msa0195980:intron 35.0%
GAGAGAAGATATGCAAATTC+TGG - chr2_1:12948653-12948672 Msa0195980:intron 35.0%
AGAAGATATGCAAATTCTGG+AGG - chr2_1:12948656-12948675 Msa0195980:intron 35.0%
! GGGTTTCAAATCGCAACTTT+TGG - chr2_1:12938959-12938978 Msa0195980:CDS 40.0%
! TGAGCTTAACTCAGTTGGTA+TGG - chr2_1:12939085-12939104 Msa0195980:intron 40.0%
!!! TATTTTTTTTGTGGTGGCCG+GGG + chr2_1:12939164-12939183 None:intergenic 40.0%
!!! TTTTTTTAACGCAAGGTCCG+GGG - chr2_1:12939238-12939257 Msa0195980:intron 40.0%
!!! TTTTTTTAACGCAAGGTCCG+GGG - chr2_1:12939238-12939257 Msa0195980:intron 40.0%
!!! TTTTTTTTTTGTGGTGGCCG+GGG + chr2_1:12939365-12939384 None:intergenic 40.0%
CACGATAAGAATCGAATCAC+TGG - chr2_1:12939469-12939488 Msa0195980:intron 40.0%
ATAAGAATCGAATCACTGGG+AGG - chr2_1:12939473-12939492 Msa0195980:intron 40.0%
GAAGCTCTTATCGAGATTCA+CGG - chr2_1:12939670-12939689 Msa0195980:intron 40.0%
CCAGACCTTTGCATATAGAA+AGG + chr2_1:12939702-12939721 None:intergenic 40.0%
CCTTTCTATATGCAAAGGTC+TGG - chr2_1:12939699-12939718 Msa0195980:intron 40.0%
! GATGATGATGATGAAGAAGG+AGG - chr2_1:12939785-12939804 Msa0195980:intron 40.0%
! GATGACGATGATGATGAAGA+TGG - chr2_1:12939872-12939891 Msa0195980:intron 40.0%
TGATGAAGAAGAGGAAGAAG+AGG - chr2_1:12939910-12939929 Msa0195980:intron 40.0%
! TGGATGTTCGGTTTCTGAAA+GGG - chr2_1:12940059-12940078 Msa0195980:intron 40.0%
! TCGGTTTCTGAAAGGGAAAT+TGG - chr2_1:12940066-12940085 Msa0195980:intron 40.0%
ATCTCAAATGCACATTCTGG+AGG - chr2_1:12940105-12940124 Msa0195980:intron 40.0%
ACTCAACTGTCATCAGAATG+GGG + chr2_1:12940523-12940542 None:intergenic 40.0%
! TGAGGGTATATTGCAAAACG+AGG - chr2_1:12940670-12940689 Msa0195980:intron 40.0%
! GAGGGTATATTGCAAAACGA+GGG - chr2_1:12940671-12940690 Msa0195980:intron 40.0%
! GGGACATTAACTCAGTCTTT+TGG - chr2_1:12940877-12940896 Msa0195980:intron 40.0%
GTCCTTACAATTCTTCTAGG+TGG - chr2_1:12941011-12941030 Msa0195980:intron 40.0%
CACCACCTAGAAGAATTGTA+AGG + chr2_1:12941016-12941035 None:intergenic 40.0%
CTTACAATTCTTCTAGGTGG+TGG - chr2_1:12941014-12941033 Msa0195980:intron 40.0%
!! ATGGGGCTTTGACTAGTTTA+TGG - chr2_1:12941110-12941129 Msa0195980:intron 40.0%
CTAGTTTATGGAGAGATAGG+CGG - chr2_1:12941122-12941141 Msa0195980:intron 40.0%
ATAGAACCAGCAGTTCTTGA+AGG + chr2_1:12941303-12941322 None:intergenic 40.0%
!! TCAAGAACTGCTGGTTCTAT+TGG - chr2_1:12941303-12941322 Msa0195980:intron 40.0%
!! GGATGTTGGTGATTGAGAAT+AGG - chr2_1:12941329-12941348 Msa0195980:intron 40.0%
TGAGAATAGGTTCAGTAGCA+TGG - chr2_1:12941342-12941361 Msa0195980:intron 40.0%
CACACTCGAGAATCTTCAAT+TGG + chr2_1:12941490-12941509 None:intergenic 40.0%
TGAAGATTCTCGAGTGTGTT+TGG - chr2_1:12941492-12941511 Msa0195980:intron 40.0%
TCCTGTTCTAGTGTTTGAGT+AGG - chr2_1:12941636-12941655 Msa0195980:intron 40.0%
CCTGTTCTAGTGTTTGAGTA+GGG - chr2_1:12941637-12941656 Msa0195980:intron 40.0%
ATGAGATAAAGGTGGTATCG+TGG - chr2_1:12941788-12941807 Msa0195980:intron 40.0%
CCATTCATAAAACAGACACG+GGG + chr2_1:12941839-12941858 None:intergenic 40.0%
! TAGCTTTTATTGGGGACTTG+GGG - chr2_1:12941903-12941922 Msa0195980:intron 40.0%
!! GTTCTGGTTATTTGAGTTGC+AGG - chr2_1:12942003-12942022 Msa0195980:intron 40.0%
AATTCAGCAACAACACAACC+AGG + chr2_1:12942029-12942048 None:intergenic 40.0%
! GTGTTCACTGTGTTTAGGTT+TGG - chr2_1:12942081-12942100 Msa0195980:intron 40.0%
AGAAAAAGACAATCCAGGTC+TGG + chr2_1:12942156-12942175 None:intergenic 40.0%
! CTTTTTCTGCTGGAATTCTC+AGG - chr2_1:12942168-12942187 Msa0195980:intron 40.0%
!!! GGTTGTGTTTTGGTTCTTTG+AGG - chr2_1:12942414-12942433 Msa0195980:intron 40.0%
TTATAGACCCTGCATCTAGT+AGG + chr2_1:12942495-12942514 None:intergenic 40.0%
GATGATGTGTATAGAAGGGA+CGG + chr2_1:12943396-12943415 None:intergenic 40.0%
TTAACCACACGCCTTTATGA+AGG + chr2_1:12943690-12943709 None:intergenic 40.0%
! TTCATAAAGGCGTGTGGTTA+AGG - chr2_1:12943689-12943708 Msa0195980:intron 40.0%
!! TACACCCGATTTTGATGGTT+TGG + chr2_1:12944785-12944804 None:intergenic 40.0%
AGGTTCGATTGGTACGTATT+AGG + chr2_1:12944834-12944853 None:intergenic 40.0%
AAACCTTAAGACGGTGATGA+TGG - chr2_1:12944938-12944957 Msa0195980:intron 40.0%
TGGTCGTTGATCCTAAAATG+TGG - chr2_1:12945072-12945091 Msa0195980:intron 40.0%
AGTCGCTGATCTAACTTCTA+AGG - chr2_1:12945124-12945143 Msa0195980:intron 40.0%
GATGATTGACGTTGCTCATT+TGG - chr2_1:12945274-12945293 Msa0195980:intron 40.0%
GGGTTTCCATATCAACTTTG+AGG + chr2_1:12945349-12945368 None:intergenic 40.0%
TGTCTATGACAGCTCGATAA+AGG - chr2_1:12945668-12945687 Msa0195980:intron 40.0%
AAAGGTCCAAGAAGAATGCA+AGG - chr2_1:12945890-12945909 Msa0195980:intron 40.0%
ACATTGCCTTGCATTCTTCT+TGG + chr2_1:12945899-12945918 None:intergenic 40.0%
AGAAGAATGCAAGGCAATGT+TGG - chr2_1:12945899-12945918 Msa0195980:intron 40.0%
TTATGGCAAATGCTGCTGAA+TGG - chr2_1:12946000-12946019 Msa0195980:intron 40.0%
AATGGTTGAGGAGTCATTCA+TGG - chr2_1:12946018-12946037 Msa0195980:intron 40.0%
CTTCTGTCGTGACGAAATTA+TGG - chr2_1:12946275-12946294 Msa0195980:intron 40.0%
TATGGTCTTTGATGGAAGCT+TGG - chr2_1:12946539-12946558 Msa0195980:intron 40.0%
TCTTTGATGGAAGCTTGGTT+AGG - chr2_1:12946544-12946563 Msa0195980:intron 40.0%
!! ATTCACTTTGGTGCTTTAGG+TGG - chr2_1:12946606-12946625 Msa0195980:intron 40.0%
!!! ACAACCCACTTTCCCTTTTT+TGG + chr2_1:12946899-12946918 None:intergenic 40.0%
TTTGATGCGACTAGAAGCTA+TGG - chr2_1:12947111-12947130 Msa0195980:intron 40.0%
GATTGCGAATTTCATCTGGA+TGG - chr2_1:12947133-12947152 Msa0195980:intron 40.0%
!!! ATCTGGATGGTTTTGAAGGT+GGG - chr2_1:12947146-12947165 Msa0195980:intron 40.0%
GTTCTGTAATGCAATCACAG+AGG - chr2_1:12947173-12947192 Msa0195980:intron 40.0%
GACCATGGAATGATACAGAT+TGG + chr2_1:12947330-12947349 None:intergenic 40.0%
TATATCCTTAGGCTTGACCA+TGG + chr2_1:12947345-12947364 None:intergenic 40.0%
TGATGCATGTGCATTAAGAG+TGG - chr2_1:12947382-12947401 Msa0195980:intron 40.0%
TAATAGACATGTGCATCGCA+CGG - chr2_1:12948049-12948068 Msa0195980:CDS 40.0%
GGAGGCCTAAAAAGGTTAAA+AGG - chr2_1:12948111-12948130 Msa0195980:intron 40.0%
!!! TCAACACGCTGATTTTGTTG+TGG + chr2_1:12948145-12948164 None:intergenic 40.0%
TTTAGGCAGAATCATGATCG+GGG + chr2_1:12948268-12948287 None:intergenic 40.0%
CTTTAGGCAGAATCATGATC+GGG + chr2_1:12948269-12948288 None:intergenic 40.0%
ATGTGATTCTTCGCGAATTG+AGG + chr2_1:12948384-12948403 None:intergenic 40.0%
! CAGTTCTACTTGTTAAGGTC+TGG - chr2_1:12948427-12948446 Msa0195980:intron 40.0%
AGATTGCTTGGTATGCCAAA+GGG - chr2_1:12948616-12948635 Msa0195980:intron 40.0%
CTCAATACCGACCCTAACTA+CGG - chr2_1:12939496-12939515 Msa0195980:intron 45.0%
ATTTCGATCAACAGCTCCTC+CGG + chr2_1:12939566-12939585 None:intergenic 45.0%
! GATGATGATGAAGAAGGAGG+AGG - chr2_1:12939788-12939807 Msa0195980:intron 45.0%
AGAGGAAGAAGAGGAAGAAG+AGG - chr2_1:12939919-12939938 Msa0195980:intron 45.0%
AGAAGAGGAAGAAGAGGAGA+AGG - chr2_1:12939925-12939944 Msa0195980:intron 45.0%
ACAATTGCCGATGAACGAGT+TGG - chr2_1:12939955-12939974 Msa0195980:intron 45.0%
AGCTTAGCCAACTCGTTCAT+CGG + chr2_1:12939965-12939984 None:intergenic 45.0%
!! GATGATGATGGCAGTTGCTA+AGG - chr2_1:12940021-12940040 Msa0195980:intron 45.0%
GTGGATGTTCGGTTTCTGAA+AGG - chr2_1:12940058-12940077 Msa0195980:intron 45.0%
GTGTCTCAAAAGCTTTCTGC+AGG - chr2_1:12940138-12940157 Msa0195980:intron 45.0%
CAAAACGAGGGAAATGGGAT+AGG - chr2_1:12940683-12940702 Msa0195980:intron 45.0%
AGGGAAATGGGATAGGAAAG+TGG - chr2_1:12940690-12940709 Msa0195980:intron 45.0%
GGGAAATGGGATAGGAAAGT+GGG - chr2_1:12940691-12940710 Msa0195980:intron 45.0%
AATGTGACAAGGCGAAATGG+TGG + chr2_1:12940781-12940800 None:intergenic 45.0%
ACCATTTCGCCTTGTCACAT+TGG - chr2_1:12940780-12940799 Msa0195980:intron 45.0%
ACCAATGTGACAAGGCGAAA+TGG + chr2_1:12940784-12940803 None:intergenic 45.0%
TGTTAGGGACCAATGTGACA+AGG + chr2_1:12940792-12940811 None:intergenic 45.0%
TTGTCACATTGGTCCCTAAC+AGG - chr2_1:12940791-12940810 Msa0195980:intron 45.0%
TGTCACATTGGTCCCTAACA+GGG - chr2_1:12940792-12940811 Msa0195980:intron 45.0%
ATATCTTGCATAGGGCAGAG+TGG - chr2_1:12940975-12940994 Msa0195980:intron 45.0%
TATCTTGCATAGGGCAGAGT+GGG - chr2_1:12940976-12940995 Msa0195980:intron 45.0%
TTTATGGAGAGATAGGCGGA+TGG - chr2_1:12941126-12941145 Msa0195980:intron 45.0%
TTATGGAGAGATAGGCGGAT+GGG - chr2_1:12941127-12941146 Msa0195980:intron 45.0%
TAGTGCAAGATTAGAGGGTG+AGG - chr2_1:12941212-12941231 Msa0195980:intron 45.0%
AGTGCAAGATTAGAGGGTGA+GGG - chr2_1:12941213-12941232 Msa0195980:intron 45.0%
!!! TCTGGAGGTGGGTTTTTTCT+TGG - chr2_1:12941245-12941264 Msa0195980:intron 45.0%
GCGTAGGAGATTGTTTGTGT+GGG - chr2_1:12941267-12941286 Msa0195980:intron 45.0%
TAGGAGATTGTTTGTGTGGG+AGG - chr2_1:12941270-12941289 Msa0195980:intron 45.0%
TAACCTCCTTCAAGAACTGC+TGG - chr2_1:12941294-12941313 Msa0195980:intron 45.0%
!! AGAACTGCTGGTTCTATTGG+AGG - chr2_1:12941306-12941325 Msa0195980:intron 45.0%
!! GAACTGCTGGTTCTATTGGA+GGG - chr2_1:12941307-12941326 Msa0195980:intron 45.0%
!! AACTGCTGGTTCTATTGGAG+GGG - chr2_1:12941308-12941327 Msa0195980:intron 45.0%
GAATAGGTTCAGTAGCATGG+AGG - chr2_1:12941345-12941364 Msa0195980:intron 45.0%
CCCTACTCAAACACTAGAAC+AGG + chr2_1:12941640-12941659 None:intergenic 45.0%
AAGAAAATCCGGAAGGGCTA+TGG - chr2_1:12941667-12941686 Msa0195980:intron 45.0%
AGAAAATCCGGAAGGGCTAT+GGG - chr2_1:12941668-12941687 Msa0195980:intron 45.0%
AAATCAACCCATAGCCCTTC+CGG + chr2_1:12941678-12941697 None:intergenic 45.0%
AGATAAAGGTGGTATCGTGG+AGG - chr2_1:12941791-12941810 Msa0195980:intron 45.0%
! CCCCGTGTCTGTTTTATGAA+TGG - chr2_1:12941836-12941855 Msa0195980:intron 45.0%
ATCTTCACGACGACATCACA+GGG + chr2_1:12941941-12941960 None:intergenic 45.0%
TATCTTCACGACGACATCAC+AGG + chr2_1:12941942-12941961 None:intergenic 45.0%
! TCACTGTGTTTAGGTTTGGG+AGG - chr2_1:12942085-12942104 Msa0195980:intron 45.0%
CCAGCAGAAAAAGACAATCC+AGG + chr2_1:12942161-12942180 None:intergenic 45.0%
! CCTGGATTGTCTTTTTCTGC+TGG - chr2_1:12942158-12942177 Msa0195980:intron 45.0%
GAGGTTCTGTTGCATCTACT+AGG - chr2_1:12942433-12942452 Msa0195980:intron 45.0%
GTTGCATCTACTAGGCTCTT+CGG - chr2_1:12942441-12942460 Msa0195980:intron 45.0%
AGTATCTCAGAACGAGTACC+CGG + chr2_1:12942535-12942554 None:intergenic 45.0%
GTCGGGAATTGCAACTCAAT+CGG + chr2_1:12943640-12943659 None:intergenic 45.0%
! TATTTTGCTTGCGTTCCGTC+GGG + chr2_1:12944870-12944889 None:intergenic 45.0%
! GTATTTTGCTTGCGTTCCGT+CGG + chr2_1:12944871-12944890 None:intergenic 45.0%
TCTATAGGTAGCACCGTGAT+CGG + chr2_1:12944972-12944991 None:intergenic 45.0%
AGTTAGATCAGCGACTTCAG+TGG + chr2_1:12945120-12945139 None:intergenic 45.0%
CATCATCCAGAACAAGATGC+TGG - chr2_1:12945176-12945195 Msa0195980:intron 45.0%
TCAACACCAGCATCTTGTTC+TGG + chr2_1:12945185-12945204 None:intergenic 45.0%
TGATATGGAAACCCAAGCTG+TGG - chr2_1:12945355-12945374 Msa0195980:intron 45.0%
AGACCAAACCTGAGTTAGGT+TGG - chr2_1:12945932-12945951 Msa0195980:intron 45.0%
GATCCAACCTAACTCAGGTT+TGG + chr2_1:12945938-12945957 None:intergenic 45.0%
CAAATGCTGCTGAATGGTTG+AGG - chr2_1:12946006-12946025 Msa0195980:intron 45.0%
!!! TTCATGGTTTTGAGTTGGCC+TGG - chr2_1:12946034-12946053 Msa0195980:intron 45.0%
!!! TCATGGTTTTGAGTTGGCCT+GGG - chr2_1:12946035-12946054 Msa0195980:intron 45.0%
!! GACATTGACTCGTTCAGATC+TGG + chr2_1:12946411-12946430 None:intergenic 45.0%
GAAGAAGAGAGATGGAGCAA+TGG + chr2_1:12946944-12946963 None:intergenic 45.0%
GCTAGGGTGAAAGAAGATAG+TGG + chr2_1:12947031-12947050 None:intergenic 45.0%
!! GAACACATGCAAGCTTGCTA+GGG + chr2_1:12947047-12947066 None:intergenic 45.0%
! TGAACACATGCAAGCTTGCT+AGG + chr2_1:12947048-12947067 None:intergenic 45.0%
TGCTCTTGATTGTTAGGCTC+TGG - chr2_1:12947073-12947092 Msa0195980:intron 45.0%
!!! CATCTGGATGGTTTTGAAGG+TGG - chr2_1:12947145-12947164 Msa0195980:intron 45.0%
TCATTCCATGGTCAAGCCTA+AGG - chr2_1:12947337-12947356 Msa0195980:intron 45.0%
AATAGACATGTGCATCGCAC+GGG - chr2_1:12948050-12948069 Msa0195980:CDS 45.0%
TCACCGCCATTGTTAAGGTA+TGG + chr2_1:12948206-12948225 None:intergenic 45.0%
TGTCATCACCGCCATTGTTA+AGG + chr2_1:12948211-12948230 None:intergenic 45.0%
TAACAATGGCGGTGATGACA+CGG - chr2_1:12948211-12948230 Msa0195980:intron 45.0%
TGAGGTGCGTTTGCAACTTA+TGG - chr2_1:12948340-12948359 Msa0195980:intron 45.0%
TTCGTCGTCCTGAATTGTTG+AGG - chr2_1:12948478-12948497 Msa0195980:intron 45.0%
GAAAAACCGGATGATGAAGC+AGG - chr2_1:12948569-12948588 Msa0195980:intron 45.0%
! GGCTCAGTTGGATAGTGTTT+TGG - chr2_1:12948593-12948612 Msa0195980:intron 45.0%
GAGATTGCTTGGTATGCCAA+AGG - chr2_1:12948615-12948634 Msa0195980:intron 45.0%
!! CAGAGTTCTGAATCTCCCTT+TGG + chr2_1:12948634-12948653 None:intergenic 45.0%
!!! TATTTTTTTTATTTTTTTTG+TGG + chr2_1:12939173-12939192 None:intergenic 5.0%
!!! ATATTAATTTTTTTAAAAAC+GGG + chr2_1:12943289-12943308 None:intergenic 5.0%
!!! CATATTAATTTTTTTAAAAA+CGG + chr2_1:12943290-12943309 None:intergenic 5.0%
!!! TTTTCAAATAATATTTTTTA+AGG - chr2_1:12944724-12944743 Msa0195980:intron 5.0%
!! ATTAAAAATGAAATAAAAAT+TGG - chr2_1:12948090-12948109 Msa0195980:intron 5.0%
CCAACTGAGTTAAGCTCACG+AGG + chr2_1:12939083-12939102 None:intergenic 50.0%
CCTCGTGAGCTTAACTCAGT+TGG - chr2_1:12939080-12939099 Msa0195980:intron 50.0%
TTTCGATCAACAGCTCCTCC+GGG + chr2_1:12939565-12939584 None:intergenic 50.0%
TGAGGTGCGTTTGCAAGTTG+TGG - chr2_1:12939615-12939634 Msa0195980:intron 50.0%
AGAGGAAGAAGAGGAGAAGG+AGG - chr2_1:12939928-12939947 Msa0195980:intron 50.0%
ATCTTGCATAGGGCAGAGTG+GGG - chr2_1:12940977-12940996 Msa0195980:intron 50.0%
!! CGCGGGGACAGTTTTTAGAA+TGG - chr2_1:12941081-12941100 Msa0195980:intron 50.0%
TATGGAGAGATAGGCGGATG+GGG - chr2_1:12941128-12941147 Msa0195980:intron 50.0%
CAAGATTAGAGGGTGAGGGA+AGG - chr2_1:12941217-12941236 Msa0195980:intron 50.0%
TGAGGGAAGGTAATGTCTGG+AGG - chr2_1:12941230-12941249 Msa0195980:intron 50.0%
GGAAGGTAATGTCTGGAGGT+GGG - chr2_1:12941234-12941253 Msa0195980:intron 50.0%
!!! GGTGGGTTTTTTCTTGGCGT+AGG - chr2_1:12941251-12941270 Msa0195980:intron 50.0%
GGCGTAGGAGATTGTTTGTG+TGG - chr2_1:12941266-12941285 Msa0195980:intron 50.0%
GAACCAGCAGTTCTTGAAGG+AGG + chr2_1:12941300-12941319 None:intergenic 50.0%
GGTTCTATTGGAGGGGATGT+TGG - chr2_1:12941315-12941334 Msa0195980:intron 50.0%
!! CTCGAGTGTGTTTGGTGTGT+TGG - chr2_1:12941500-12941519 Msa0195980:intron 50.0%
!! GGAAGGGCTATGGGTTGATT+TGG - chr2_1:12941677-12941696 Msa0195980:intron 50.0%
TAAAGGTGGTATCGTGGAGG+TGG - chr2_1:12941794-12941813 Msa0195980:intron 50.0%
! GAGGTGGAGTTTGAGACTGA+AGG - chr2_1:12941810-12941829 Msa0195980:intron 50.0%
! CTTTTATTGGGGACTTGGGG+TGG - chr2_1:12941906-12941925 Msa0195980:intron 50.0%
CAGCAGCAGAGAACAGAAAG+GGG + chr2_1:12941981-12942000 None:intergenic 50.0%
GCAGCAGCAGAGAACAGAAA+GGG + chr2_1:12941982-12942001 None:intergenic 50.0%
CTTTCTGTTCTCTGCTGCTG+CGG - chr2_1:12941981-12942000 Msa0195980:intron 50.0%
!! GGTTATTTGAGTTGCAGGCC+TGG - chr2_1:12942008-12942027 Msa0195980:intron 50.0%
TCAGCGAAAAGAACCAGACC+TGG - chr2_1:12942140-12942159 Msa0195980:intron 50.0%
CTGCTGGAATTCTCAGGTGA+AGG - chr2_1:12942174-12942193 Msa0195980:intron 50.0%
GCATCGAATGACAGTCCCTA+CGG + chr2_1:12942213-12942232 None:intergenic 50.0%
! TGGTCCTTCATAAAGGCGTG+TGG - chr2_1:12943683-12943702 Msa0195980:intron 50.0%
!! CCTTAAGACGGTGATGATGG+CGG - chr2_1:12944941-12944960 Msa0195980:intron 50.0%
TGCTCGAGTCAACCCTAACA+AGG + chr2_1:12945010-12945029 None:intergenic 50.0%
CGAGCAATCCTCTGCAAATG+AGG - chr2_1:12945024-12945043 Msa0195980:intron 50.0%
CAAACGCACCTCATTTGCAG+AGG + chr2_1:12945035-12945054 None:intergenic 50.0%
TTGCAAGCTGTGGAAATCGC+TGG - chr2_1:12945052-12945071 Msa0195980:intron 50.0%
TATGGAAACCCAAGCTGTGG+AGG - chr2_1:12945358-12945377 Msa0195980:intron 50.0%
CAATCCATCCTCCACAGCTT+GGG + chr2_1:12945369-12945388 None:intergenic 50.0%
TCAATCCATCCTCCACAGCT+TGG + chr2_1:12945370-12945389 None:intergenic 50.0%
! GCAAGGCAATGTTGGCTACT+TGG - chr2_1:12945907-12945926 Msa0195980:intron 50.0%
GGCTAGACCAAACCTGAGTT+AGG - chr2_1:12945928-12945947 Msa0195980:intron 50.0%
!!! GATGGTTTTGAAGGTGGGTG+TGG - chr2_1:12947151-12947170 Msa0195980:intron 50.0%
GCTGCGTTCCTCAACAATTC+AGG + chr2_1:12948489-12948508 None:intergenic 50.0%
AGTTGACGAATGCAGCTGCT+CGG - chr2_1:12948523-12948542 Msa0195980:intron 50.0%
AAACCGGATGATGAAGCAGG+TGG - chr2_1:12948572-12948591 Msa0195980:intron 50.0%
GTCATCGCCGTAGTTAGGGT+CGG + chr2_1:12939506-12939525 None:intergenic 55.0%
GACCCTAACTACGGCGATGA+CGG - chr2_1:12939505-12939524 Msa0195980:intron 55.0%
GGGTGAGGGAAGGTAATGTC+TGG - chr2_1:12941227-12941246 Msa0195980:intron 55.0%
GGGAAGGTAATGTCTGGAGG+TGG - chr2_1:12941233-12941252 Msa0195980:intron 55.0%
! ATGAATGGTCTTGGGACCCG+AGG - chr2_1:12941851-12941870 Msa0195980:intron 55.0%
! TGAATGGTCTTGGGACCCGA+GGG - chr2_1:12941852-12941871 Msa0195980:intron 55.0%
TTATTGGGGACTTGGGGTGG+AGG - chr2_1:12941909-12941928 Msa0195980:intron 55.0%
CGCAGCAGCAGAGAACAGAA+AGG + chr2_1:12941983-12942002 None:intergenic 55.0%
GGAATTCTCAGGTGAAGGCG+CGG - chr2_1:12942179-12942198 Msa0195980:CDS 55.0%
! AGGCGCGGTTTTTCTACCGT+AGG - chr2_1:12942194-12942213 Msa0195980:CDS 55.0%
! GGCGCGGTTTTTCTACCGTA+GGG - chr2_1:12942195-12942214 Msa0195980:CDS 55.0%
GGACTGTGAGCAGGTTCGAT+TGG + chr2_1:12944845-12944864 None:intergenic 55.0%
CCGCCATCATCACCGTCTTA+AGG + chr2_1:12944944-12944963 None:intergenic 55.0%
TGAGGTGCGTTTGCAAGCTG+TGG - chr2_1:12945042-12945061 Msa0195980:intron 55.0%
GAAACCCAAGCTGTGGAGGA+TGG - chr2_1:12945362-12945381 Msa0195980:intron 55.0%
!! TTTGAGTTGGCCTGGGAAGC+AGG - chr2_1:12946042-12946061 Msa0195980:intron 55.0%
CTTTGTGAAGCCTGCTTCCC+AGG + chr2_1:12946055-12946074 None:intergenic 55.0%
GCACGGGTCAAACGTCTAGT+AGG - chr2_1:12948066-12948085 Msa0195980:CDS 55.0%
TGTTGAGGAACGCAGCTGCT+CGG - chr2_1:12948493-12948512 Msa0195980:intron 55.0%
! GCTGCTCGGTGGGATAATCT+TGG - chr2_1:12948537-12948556 Msa0195980:intron 55.0%
GAGCCACCTGCTTCATCATC+CGG + chr2_1:12948578-12948597 None:intergenic 55.0%
GATGAAGCAGGTGGCTCAGT+TGG - chr2_1:12948581-12948600 Msa0195980:intron 55.0%
! AAGGTCTGGGGTTCGAACCC+CGG - chr2_1:12939144-12939163 Msa0195980:intron 60.0%
AAGGTCCGGGGTTCGAACTC+CGG - chr2_1:12939250-12939269 Msa0195980:intron 60.0%
CGCCGTCATCGCCGTAGTTA+GGG + chr2_1:12939510-12939529 None:intergenic 60.0%
! CCTAACTACGGCGATGACGG+CGG - chr2_1:12939508-12939527 Msa0195980:intron 60.0%
GTCACCGATCTCGGTAGTCC+CGG - chr2_1:12939544-12939563 Msa0195980:intron 60.0%
TCCTCCGGGACTACCGAGAT+CGG + chr2_1:12939551-12939570 None:intergenic 60.0%
GTTCTCTGCTGCTGCGGTTC+TGG - chr2_1:12941987-12942006 Msa0195980:intron 60.0%
TTGCTTGCGTTCCGTCGGGT+CGG + chr2_1:12944866-12944885 None:intergenic 60.0%
TGGCGGTGATGACACGGAAG+CGG - chr2_1:12948217-12948236 Msa0195980:intron 60.0%
TGACGAATGCAGCTGCTCGG+TGG - chr2_1:12948526-12948545 Msa0195980:intron 60.0%
GACGAATGCAGCTGCTCGGT+GGG - chr2_1:12948527-12948546 Msa0195980:intron 60.0%
AAGGTCCGGGGTTCGAACCC+CGG - chr2_1:12939345-12939364 Msa0195980:intron 65.0%
CCGCCGTCATCGCCGTAGTT+AGG + chr2_1:12939511-12939530 None:intergenic 65.0%
! GGCGATGACGGCGGAAGAGA+CGG - chr2_1:12939517-12939536 Msa0195980:intron 65.0%
! GATGACGGCGGAAGAGACGG+CGG - chr2_1:12939520-12939539 Msa0195980:intron 65.0%
GACGGCGGAGTCACCGATCT+CGG - chr2_1:12939535-12939554 Msa0195980:intron 65.0%
ACCGATCTCGGTAGTCCCGG+AGG - chr2_1:12939547-12939566 Msa0195980:intron 65.0%
CTGCTCACAGTCCGACCCGA+CGG - chr2_1:12944852-12944871 Msa0195980:intron 65.0%
!! GATGGCGGAGTCGCCGATCA+CGG - chr2_1:12944956-12944975 Msa0195980:intron 65.0%
CGGTGATGACACGGAAGCGG+CGG - chr2_1:12948220-12948239 Msa0195980:intron 65.0%
TGAGGAACGCAGCTGCTCGG+TGG - chr2_1:12948496-12948515 Msa0195980:intron 65.0%
GAGGAACGCAGCTGCTCGGT+GGG - chr2_1:12948497-12948516 Msa0195980:intron 65.0%
GGTGGCCGGAGTTCGAACCC+CGG + chr2_1:12939258-12939277 None:intergenic 70.0%
CGTCGGGTCGGACTGTGAGC+AGG + chr2_1:12944854-12944873 None:intergenic 70.0%
ACGGAAGCGGCGGCGCATGA+TGG - chr2_1:12948230-12948249 Msa0195980:intron 70.0%
GAAGCGGCGGCGCATGATGG+AGG - chr2_1:12948233-12948252 Msa0195980:intron 70.0%
GGTGGCCGGGGTTCGAACCC+CGG + chr2_1:12939152-12939171 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 12938815 12948752 12938815 ID=Msa0195980;Name=Msa0195980
chr2_1 mRNA 12938815 12948752 12938815 ID=Msa0195980-mRNA-1;Parent=Msa0195980;Name=Msa0195980-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0|0|0.66|0|0|6|0|381
chr2_1 exon 12948744 12948752 12948744 ID=Msa0195980-mRNA-1:exon:5675;Parent=Msa0195980-mRNA-1
chr2_1 exon 12948689 12948696 12948689 ID=Msa0195980-mRNA-1:exon:5674;Parent=Msa0195980-mRNA-1
chr2_1 exon 12947903 12948089 12947903 ID=Msa0195980-mRNA-1:exon:5673;Parent=Msa0195980-mRNA-1
chr2_1 exon 12947408 12947851 12947408 ID=Msa0195980-mRNA-1:exon:5672;Parent=Msa0195980-mRNA-1
chr2_1 exon 12942177 12942421 12942177 ID=Msa0195980-mRNA-1:exon:5671;Parent=Msa0195980-mRNA-1
chr2_1 exon 12938815 12939067 12938815 ID=Msa0195980-mRNA-1:exon:5670;Parent=Msa0195980-mRNA-1
chr2_1 CDS 12948744 12948752 12948744 ID=Msa0195980-mRNA-1:cds;Parent=Msa0195980-mRNA-1
chr2_1 CDS 12948689 12948696 12948689 ID=Msa0195980-mRNA-1:cds;Parent=Msa0195980-mRNA-1
chr2_1 CDS 12947903 12948089 12947903 ID=Msa0195980-mRNA-1:cds;Parent=Msa0195980-mRNA-1
chr2_1 CDS 12947408 12947851 12947408 ID=Msa0195980-mRNA-1:cds;Parent=Msa0195980-mRNA-1
chr2_1 CDS 12942177 12942421 12942177 ID=Msa0195980-mRNA-1:cds;Parent=Msa0195980-mRNA-1
chr2_1 CDS 12938815 12939067 12938815 ID=Msa0195980-mRNA-1:cds;Parent=Msa0195980-mRNA-1
Gene Sequence

>Msa0195980

ATGAACAAGAAAAGAGTAATCGAATCACTGGGAGGCTCAATACCGACCCTAACTACGGCGATGACGGCGGAAGAGACGGCGGAGTCACCGATCTCGGTAGTCCCGGAGGAGCTGTTGATCGAAATCCTTTATAGAATTGATAATACTCTGCAATTGAGGTGCGTTTGCAAGTTGTGGAAATCGCTCGTTGTTGATCATGAATTCGTCTGGGAACAGTACAATGCTTTCAAATTGCAGAATATTATGCCTCAAGAAGAAGAAGAAGAAGAAGAAGATGATGATGATGAAGAAGGAGGAGGAGATGATGATGATGATGATGATGATGATGATGATGAAGCAGAAGTAGCAGATGAAGAAGAAGATGACGATGATGATGAAGATGGTGAAGAAGAAGATGATGATGAAGAAGAGGAAGAAGAGGAAGAAGAGGAGAAGGAGGAGAAACAATTGCCGATGAACGAGTTGGCTAAGCTTGATAATCTTGATGAAGAAGAAAAAGAGAGACAATTGATGATGATGGCAGTTGCTAAGGCAGATCAAATTTTGGTGGATGTTCGGTTTCTGAAAGGGAAATTGGAAACTATTAATGATTTATCTCAAATGCACATTCTGGAGGATAAAATGAAGTGTCTCAAAAGCTTTCTGCAGGTCAAGAAACACATTGATGCTTTCAAATCGCATCATCCAGAACAAGATGCTGGTGTTGAAGATGCTGCTGAAGAAAAAGAAGAAAAAGACGATGCTGCTCCAGATGAAGACAAAGTGAAACAATGGTTGATGATTGACGTTGCTCATTTGGATAAGCTTTTGTTGAATTTACTTTCTATCAAAGAGGATATGAAAACTCTCCTCAAAGTTGATATGGAAACCCAAGCTGTGGAGGATGGATTGAAGAACGCAGCTGCTCGGTGGGATAAGTTGACGAATGCAGCTGCTCGGTGGGATAATCTTGGTGATCAAGAGAAAAACCGGATGATGAAGCAGGTGGCTCAGTTGGATAGTGTTTTGGAGATTGCTTGGTATGCCAAAGGGAGATTCAGAACTCTGAGAGAAGATATGCAAATTCTGGAGGATAGATTGAAGTGTCTCAAAATCTTTCTGAAGATTTATCATAAGTCTACAACATCTTCATCTTCTCAGTTATGA

Protein sequence

>Msa0195980

MNKKRVIESLGGSIPTLTTAMTAEETAESPISVVPEELLIEILYRIDNTLQLRCVCKLWKSLVVDHEFVWEQYNAFKLQNIMPQEEEEEEEDDDDEEGGGDDDDDDDDDDDEAEVADEEEDDDDDEDGEEEDDDEEEEEEEEEEKEEKQLPMNELAKLDNLDEEEKERQLMMMAVAKADQILVDVRFLKGKLETINDLSQMHILEDKMKCLKSFLQVKKHIDAFKSHHPEQDAGVEDAAEEKEEKDDAAPDEDKVKQWLMIDVAHLDKLLLNLLSIKEDMKTLLKVDMETQAVEDGLKNAAARWDKLTNAAARWDNLGDQEKNRMMKQVAQLDSVLEIAWYAKGRFRTLREDMQILEDRLKCLKIFLKIYHKSTTSSSSQL*