Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901160 | XP_003620733.2 | 97.007 | 401 | 11 | 1 | 1 | 401 | 1 | 400 | 0.0 | 766 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901160 | sp|Q9LZ00|MED4_ARATH | 56.872 | 422 | 130 | 9 | 1 | 384 | 1 | 408 | 1.30e-128 | 380 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901160 | G7KQF7 | 97.007 | 401 | 11 | 1 | 1 | 401 | 1 | 400 | 0.0 | 766 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005000 | Msa0901160 | 0.807650 | 4.556411e-50 | -8.615850e-47 |
| Msa0023830 | Msa0901160 | 0.833125 | 6.380676e-56 | -8.615850e-47 |
| Msa0030310 | Msa0901160 | -0.815798 | 7.686850e-52 | -8.615850e-47 |
| Msa0032840 | Msa0901160 | 0.833816 | 4.290686e-56 | -8.615850e-47 |
| Msa0052350 | Msa0901160 | 0.809368 | 1.959148e-50 | -8.615850e-47 |
| Msa0097360 | Msa0901160 | 0.805727 | 1.160846e-49 | -8.615850e-47 |
| Msa0098390 | Msa0901160 | 0.812511 | 4.087493e-51 | -8.615850e-47 |
| Msa0112300 | Msa0901160 | 0.810750 | 9.869797e-51 | -8.615850e-47 |
| Msa0639120 | Msa0901160 | -0.807313 | 5.373242e-50 | -8.615850e-47 |
| Msa0650920 | Msa0901160 | -0.800648 | 1.305706e-48 | -8.615850e-47 |
| Msa0663900 | Msa0901160 | -0.823087 | 1.673223e-53 | -8.615850e-47 |
| Msa0687630 | Msa0901160 | -0.811546 | 6.631206e-51 | -8.615850e-47 |
| Msa0797120 | Msa0901160 | -0.821696 | 3.518806e-53 | -8.615850e-47 |
| Msa0798000 | Msa0901160 | 0.826001 | 3.446204e-54 | -8.615850e-47 |
| Msa0831870 | Msa0901160 | -0.801062 | 1.074888e-48 | -8.615850e-47 |
| Msa0127310 | Msa0901160 | -0.801885 | 7.291710e-49 | -8.615850e-47 |
| Msa0143080 | Msa0901160 | -0.824979 | 6.018648e-54 | -8.615850e-47 |
| Msa0162770 | Msa0901160 | 0.816853 | 4.464917e-52 | -8.615850e-47 |
| Msa0175290 | Msa0901160 | 0.811426 | 7.042440e-51 | -8.615850e-47 |
| Msa0183460 | Msa0901160 | -0.805986 | 1.024190e-49 | -8.615850e-47 |
| Msa0230550 | Msa0901160 | 0.822552 | 2.229103e-53 | -8.615850e-47 |
| Msa0231880 | Msa0901160 | -0.810478 | 1.129712e-50 | -8.615850e-47 |
| Msa0236980 | Msa0901160 | -0.834377 | 3.104971e-56 | -8.615850e-47 |
| Msa0370160 | Msa0901160 | 0.830003 | 3.751428e-55 | -8.615850e-47 |
| Msa0417610 | Msa0901160 | 0.813949 | 1.974979e-51 | -8.615850e-47 |
| Msa0436280 | Msa0901160 | 0.828955 | 6.740450e-55 | -8.615850e-47 |
| Msa0437690 | Msa0901160 | 0.847899 | 8.635920e-60 | -8.615850e-47 |
| Msa0440130 | Msa0901160 | 0.806938 | 6.450110e-50 | -8.615850e-47 |
| Msa0469910 | Msa0901160 | 0.803209 | 3.888513e-49 | -8.615850e-47 |
| Msa0304590 | Msa0901160 | -0.803239 | 3.832896e-49 | -8.615850e-47 |
| Msa0304660 | Msa0901160 | -0.806135 | 9.530380e-50 | -8.615850e-47 |
| Msa0328210 | Msa0901160 | -0.816812 | 4.559741e-52 | -8.615850e-47 |
| Msa0331700 | Msa0901160 | -0.804179 | 2.446298e-49 | -8.615850e-47 |
| Msa0509950 | Msa0901160 | 0.849088 | 4.047522e-60 | -8.615850e-47 |
| Msa0552810 | Msa0901160 | -0.803550 | 3.304851e-49 | -8.615850e-47 |
| Msa0553220 | Msa0901160 | 0.809296 | 2.029225e-50 | -8.615850e-47 |
| Msa0560470 | Msa0901160 | -0.810739 | 9.922560e-51 | -8.615850e-47 |
| Msa0562300 | Msa0901160 | 0.812014 | 5.246885e-51 | -8.615850e-47 |
| Msa0565620 | Msa0901160 | 0.800309 | 1.531111e-48 | -8.615850e-47 |
| Msa0581070 | Msa0901160 | -0.806142 | 9.497266e-50 | -8.615850e-47 |
| Msa0899240 | Msa0901160 | 0.838107 | 3.500696e-57 | -8.615850e-47 |
| Msa0901160 | Msa0926070 | 0.907393 | 5.319588e-81 | -8.615850e-47 |
| Msa0901160 | Msa0966720 | 0.961873 | 3.289870e-120 | -8.615850e-47 |
| Msa0901160 | Msa0974810 | -0.802199 | 6.284621e-49 | -8.615850e-47 |
| Msa0901160 | Msa1008060 | 0.824174 | 9.309376e-54 | -8.615850e-47 |
| Msa0901160 | Msa1028470 | 0.800104 | 1.685171e-48 | -8.615850e-47 |
| Msa0901160 | Msa1040400 | -0.803330 | 3.670653e-49 | -8.615850e-47 |
| Msa0901160 | Msa1069660 | 0.852791 | 3.660522e-61 | -8.615850e-47 |
| Msa0901160 | Msa1089840 | -0.800914 | 1.152403e-48 | -8.615850e-47 |
| Msa0901160 | Msa1126120 | 0.847852 | 8.898658e-60 | -8.615850e-47 |
| Msa0901160 | Msa1157420 | 0.826314 | 2.903921e-54 | -8.615850e-47 |
| Msa0901160 | Msa1165870 | -0.810541 | 1.095186e-50 | -8.615850e-47 |
| Msa0901160 | Msa1166010 | -0.808267 | 3.368640e-50 | -8.615850e-47 |
| Msa0901160 | Msa1171770 | 0.808061 | 3.726658e-50 | -8.615850e-47 |
| Msa0901160 | Msa1193950 | 0.833492 | 5.169718e-56 | -8.615850e-47 |
| Msa0901160 | Msa1204250 | -0.810612 | 1.056990e-50 | -8.615850e-47 |
| Msa0901160 | Msa1207270 | -0.808381 | 3.185270e-50 | -8.615850e-47 |
| Msa0901160 | Msa1246530 | 0.837071 | 6.454069e-57 | -8.615850e-47 |
| Msa0901160 | Msa1267260 | -0.802102 | 6.577366e-49 | -8.615850e-47 |
| Msa0901160 | Msa1269300 | -0.808665 | 2.769432e-50 | -8.615850e-47 |
| Msa0901160 | Msa1269580 | 0.828751 | 7.552140e-55 | -8.615850e-47 |
| Msa0901160 | Msa1295490 | 0.834668 | 2.624416e-56 | -8.615850e-47 |
| Msa0901160 | Msa1310690 | -0.804117 | 2.519714e-49 | -8.615850e-47 |
| Msa0901160 | Msa1333110 | -0.811317 | 7.438951e-51 | -8.615850e-47 |
| Msa0901160 | Msa1365150 | -0.812162 | 4.871611e-51 | -8.615850e-47 |
| Msa0901160 | Msa1365860 | -0.803102 | 4.091978e-49 | -8.615850e-47 |
| Msa0901160 | Msa1367880 | -0.817597 | 3.037193e-52 | -8.615850e-47 |
| Msa0901160 | Msa1403580 | 0.803237 | 3.836349e-49 | -8.615850e-47 |
| Msa0901160 | Msa1403930 | 0.819536 | 1.103239e-52 | -8.615850e-47 |
| Msa0901160 | Msa1404190 | -0.806322 | 8.703993e-50 | -8.615850e-47 |
| Msa0901160 | Msa1418960 | 0.828838 | 7.197766e-55 | -8.615850e-47 |
| Msa0901160 | Msa1429360 | 0.828592 | 8.252482e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901160 | MtrunA17_Chr6g0487271 | 97.007 | 401 | 11 | 1 | 1 | 401 | 1 | 400 | 0.0 | 766 |
| Msa0901160 | MtrunA17_Chr8g0371901 | 82.946 | 387 | 58 | 5 | 1 | 383 | 1 | 383 | 0.0 | 622 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901160 | AT5G02850.1 | 56.872 | 422 | 130 | 9 | 1 | 384 | 1 | 408 | 1.32e-129 | 380 |
Find 134 sgRNAs with CRISPR-Local
Find 286 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGTCGCACCAGTTAATT+TGG | 0.177926 | 6_1:-97419464 | Msa0901160:CDS |
| CACCCAGGTGGTGGCTTAAT+TGG | 0.216315 | 6_1:+97419589 | None:intergenic |
| GCCTGCCCTGCTCCAAATTC+TGG | 0.232745 | 6_1:+97419883 | None:intergenic |
| TCTTTGGTTTCAACCGATTT+TGG | 0.233348 | 6_1:+97419769 | None:intergenic |
| CTCAGCATCTTTGAGTTTGT+TGG | 0.245184 | 6_1:+97420086 | None:intergenic |
| CGGAAACAGCTTCAAACATT+TGG | 0.246319 | 6_1:+97420196 | None:intergenic |
| GGTGCGACTTGAATAATTTC+TGG | 0.283186 | 6_1:+97419475 | None:intergenic |
| AGCTTTGGAGGGGTAGGGTT+TGG | 0.285527 | 6_1:+97420513 | None:intergenic |
| GTCTGAGGAGGAGGGAGCTT+TGG | 0.301684 | 6_1:+97420498 | None:intergenic |
| ATCTCCTAATTTCAATCTCT+TGG | 0.306619 | 6_1:+97420014 | None:intergenic |
| TGAATAATTTCTGGCAGCTT+TGG | 0.318616 | 6_1:+97419484 | None:intergenic |
| CCGGCCGGAACAGTAAAATT+TGG | 0.323594 | 6_1:+97419652 | None:intergenic |
| AGCAGGGCAGGCCCCTCTCC+GGG | 0.330122 | 6_1:-97419872 | Msa0901160:CDS |
| AGGATTTCTTTGGTGGTAGA+AGG | 0.339370 | 6_1:+97420243 | None:intergenic |
| TTTGGAATCAACGGTGAGTT+AGG | 0.340306 | 6_1:+97420531 | None:intergenic |
| AAAACCAAGAGATTGAAATT+AGG | 0.343447 | 6_1:-97420018 | Msa0901160:CDS |
| GCAAATTTGCCTGGAATTCA+AGG | 0.344882 | 6_1:-97419685 | Msa0901160:CDS |
| GCACCAGTTAATTTGGATCT+TGG | 0.347400 | 6_1:-97419457 | Msa0901160:CDS |
| TCTCCAAGATCCAAATTAAC+TGG | 0.347464 | 6_1:+97419454 | None:intergenic |
| GGAGGGAGCTTTGGAGGGGT+AGG | 0.360592 | 6_1:+97420507 | None:intergenic |
| ATTTGCTCGTCTTGCGGTGC+AGG | 0.361373 | 6_1:+97419838 | None:intergenic |
| GGCAATTGTACAGGCATTCC+AGG | 0.364622 | 6_1:+97419622 | None:intergenic |
| CTTCAAACATTTGGGTTTGA+AGG | 0.366665 | 6_1:+97420205 | None:intergenic |
| GAGCAGGGCAGGCCCCTCTC+CGG | 0.368053 | 6_1:-97419873 | Msa0901160:CDS |
| AGGCAAATTTGCAAGTGAAT+TGG | 0.374413 | 6_1:+97419696 | None:intergenic |
| ACGGTGAGTTAGGGTTTGTT+AGG | 0.376902 | 6_1:+97420541 | None:intergenic |
| GAGGGAGCTTTGGAGGGGTA+GGG | 0.379909 | 6_1:+97420508 | None:intergenic |
| ATCAAGAACTTCCTGGAGTT+CGG | 0.381691 | 6_1:+97420176 | None:intergenic |
| GGAAACAGCTTCAAACATTT+GGG | 0.383652 | 6_1:+97420197 | None:intergenic |
| GAAAAGTGAAAGGATTTCTT+TGG | 0.383698 | 6_1:+97420233 | None:intergenic |
| ATCACCCAACAAGTCCCTTT+GGG | 0.404501 | 6_1:-97420346 | Msa0901160:CDS |
| TTCAAAGAGCTTAGTAGATA+AGG | 0.405104 | 6_1:+97420371 | None:intergenic |
| AATTCACTTGCAAATTTGCC+TGG | 0.406267 | 6_1:-97419694 | Msa0901160:CDS |
| GGTAGCAGTCCTTGAATTCC+AGG | 0.407829 | 6_1:+97419676 | None:intergenic |
| GGATATTGGATTACCAAAAT+CGG | 0.408119 | 6_1:-97419782 | Msa0901160:CDS |
| TGATGGGTAGTCTGAGGAGG+AGG | 0.415458 | 6_1:+97420489 | None:intergenic |
| TTGCCAAATGGCGGTCTTGA+TGG | 0.418201 | 6_1:+97420466 | None:intergenic |
| GAGAGAGTAGAGCAGGAGAA+GGG | 0.422762 | 6_1:+97420442 | None:intergenic |
| TATCACCCAACAAGTCCCTT+TGG | 0.427973 | 6_1:-97420347 | Msa0901160:CDS |
| GTTCCGGCCGGTTGGAAGCC+TGG | 0.429451 | 6_1:-97419640 | Msa0901160:CDS |
| AACTGTTGTTCCTCAATCCT+TGG | 0.432983 | 6_1:+97419526 | None:intergenic |
| TGTTCCTCAATCCTTGGTAC+TGG | 0.434205 | 6_1:+97419532 | None:intergenic |
| CCTGGTTTCCACCCAGGTGG+TGG | 0.435107 | 6_1:+97419580 | None:intergenic |
| GGCTTAATTGGTATATCAAT+AGG | 0.438106 | 6_1:+97419601 | None:intergenic |
| GGGAGAAGAGAGAGTAGAGC+AGG | 0.440905 | 6_1:+97420435 | None:intergenic |
| GCCAGAATTTGGAGCAGGGC+AGG | 0.446799 | 6_1:-97419884 | Msa0901160:CDS |
| ACTAACCCAAAGGGACTTGT+TGG | 0.448740 | 6_1:+97420341 | None:intergenic |
| ACAAGCACTTCTTCAGCAAA+TGG | 0.457716 | 6_1:-97420397 | Msa0901160:CDS |
| ACCAGGGGATCCTGTGGCAT+TGG | 0.462353 | 6_1:-97419563 | Msa0901160:CDS |
| TGAAGAAGTGCTTGTGCTCT+AGG | 0.469628 | 6_1:+97420405 | None:intergenic |
| AGAGAGAGTAGAGCAGGAGA+AGG | 0.470176 | 6_1:+97420441 | None:intergenic |
| CCACCACCTGGGTGGAAACC+AGG | 0.470533 | 6_1:-97419580 | Msa0901160:CDS |
| AAACATTTGGGTTTGAAGGT+TGG | 0.480073 | 6_1:+97420209 | None:intergenic |
| TTTGTTAGGCCTAGCCTAGC+AGG | 0.483942 | 6_1:+97420555 | None:intergenic |
| TGAGGAGGAGGGAGCTTTGG+AGG | 0.484585 | 6_1:+97420501 | None:intergenic |
| GCACCGCCAGAATTTGGAGC+AGG | 0.486070 | 6_1:-97419889 | Msa0901160:CDS |
| CAGGAGAAGGGGTTGCCAAA+TGG | 0.490997 | 6_1:+97420454 | None:intergenic |
| TCACCATCAAGACCGCCATT+TGG | 0.491419 | 6_1:-97420469 | Msa0901160:CDS |
| CCTTGTGAAGAAAGGAAGGT+TGG | 0.493462 | 6_1:+97420300 | None:intergenic |
| GTGGAAGTGCACCCCGGAGA+GGG | 0.493664 | 6_1:+97419860 | None:intergenic |
| TGAAGCTGTTTCCGAACTCC+AGG | 0.494808 | 6_1:-97420187 | Msa0901160:CDS |
| AAGTGAAAGGATTTCTTTGG+TGG | 0.499520 | 6_1:+97420236 | None:intergenic |
| AGAGAGTAGAGCAGGAGAAG+GGG | 0.504201 | 6_1:+97420443 | None:intergenic |
| CTTGTGAAGAAAGGAAGGTT+GGG | 0.505188 | 6_1:+97420301 | None:intergenic |
| TCCAATGCCACAGGATCCCC+TGG | 0.507062 | 6_1:+97419562 | None:intergenic |
| AGGCATTCCAGGCTTCCAAC+CGG | 0.512872 | 6_1:+97419633 | None:intergenic |
| GAAGTGCTTGTGCTCTAGGA+AGG | 0.517707 | 6_1:+97420409 | None:intergenic |
| GCAAGTGAATTGGTATCCAC+AGG | 0.521071 | 6_1:+97419706 | None:intergenic |
| CCAACCTTCCTTTCTTCACA+AGG | 0.521794 | 6_1:-97420300 | Msa0901160:CDS |
| TGCTCGTCTTGCGGTGCAGG+TGG | 0.522400 | 6_1:+97419841 | None:intergenic |
| CTAACCCAAAGGGACTTGTT+GGG | 0.527508 | 6_1:+97420342 | None:intergenic |
| TGCCCTGCTCCAAATTCTGG+CGG | 0.529365 | 6_1:+97419886 | None:intergenic |
| TTGGAATCAACGGTGAGTTA+GGG | 0.530123 | 6_1:+97420532 | None:intergenic |
| TCAATCTTCATCATCAGTGC+TGG | 0.532755 | 6_1:+97419399 | None:intergenic |
| GAAGGTTGGTGAAAAGTGAA+AGG | 0.533645 | 6_1:+97420223 | None:intergenic |
| TCCACAGGCTGTAGAGGTGG+AGG | 0.539725 | 6_1:+97419721 | None:intergenic |
| GGATCCCCTGGTTTCCACCC+AGG | 0.540867 | 6_1:+97419574 | None:intergenic |
| ATTTCTGGCAGCTTTGGCTG+AGG | 0.545599 | 6_1:+97419490 | None:intergenic |
| GCTCTCATTTGCTCGTCTTG+CGG | 0.546241 | 6_1:+97419832 | None:intergenic |
| CCTCAATCCTTGGTACTGGA+AGG | 0.551589 | 6_1:+97419536 | None:intergenic |
| ATACCAATTAAGCCACCACC+TGG | 0.555177 | 6_1:-97419592 | Msa0901160:CDS |
| GTGGTTGGCCTTGTGAAGAA+AGG | 0.558899 | 6_1:+97420292 | None:intergenic |
| CACCACCTGGGTGGAAACCA+GGG | 0.560314 | 6_1:-97419579 | Msa0901160:CDS |
| GCTTGTGCTCTAGGAAGGGG+TGG | 0.564547 | 6_1:+97420414 | None:intergenic |
| CAGCTTCAGCTGAGACGATA+CGG | 0.565245 | 6_1:+97419957 | None:intergenic |
| AAGAGATTGAAATTAGGAGA+TGG | 0.566608 | 6_1:-97420012 | Msa0901160:CDS |
| CACCGCCAGAATTTGGAGCA+GGG | 0.567068 | 6_1:-97419888 | Msa0901160:CDS |
| TTGGTATCCACAGGCTGTAG+AGG | 0.567683 | 6_1:+97419715 | None:intergenic |
| AGTGCTTGTGCTCTAGGAAG+GGG | 0.571087 | 6_1:+97420411 | None:intergenic |
| CTTTGGGTTAGTGCATTCCG+TGG | 0.572353 | 6_1:-97420330 | Msa0901160:CDS |
| ACGGAATGCACTAACCCAAA+GGG | 0.574073 | 6_1:+97420332 | None:intergenic |
| CACGGAATGCACTAACCCAA+AGG | 0.576730 | 6_1:+97420331 | None:intergenic |
| GTGCAGGTGGAAGTGCACCC+CGG | 0.578942 | 6_1:+97419854 | None:intergenic |
| ATTCCAGGCTTCCAACCGGC+CGG | 0.578994 | 6_1:+97419637 | None:intergenic |
| AACCAAAGAGAAAACAATTG+AGG | 0.581394 | 6_1:-97419755 | Msa0901160:CDS |
| GATGGGTAGTCTGAGGAGGA+GGG | 0.582639 | 6_1:+97420490 | None:intergenic |
| CCTTCCAGTACCAAGGATTG+AGG | 0.583142 | 6_1:-97419536 | Msa0901160:CDS |
| TGGAAGTGCACCCCGGAGAG+GGG | 0.583218 | 6_1:+97419861 | None:intergenic |
| TCCCCTGGTTTCCACCCAGG+TGG | 0.584198 | 6_1:+97419577 | None:intergenic |
| AAGTGCTTGTGCTCTAGGAA+GGG | 0.584261 | 6_1:+97420410 | None:intergenic |
| GCCGGAACAGTAAAATTTGG+AGG | 0.585314 | 6_1:+97419655 | None:intergenic |
| GGGGTAGGGTTTGGAATCAA+CGG | 0.586537 | 6_1:+97420522 | None:intergenic |
| ATATCAATAGGCAATTGTAC+AGG | 0.586960 | 6_1:+97419613 | None:intergenic |
| GTACAGTCACCTGCTAGGCT+AGG | 0.587842 | 6_1:-97420564 | Msa0901160:CDS |
| CTCAATCCTTGGTACTGGAA+GGG | 0.589075 | 6_1:+97419537 | None:intergenic |
| GGAAGGGAGTCCAATGCCAC+AGG | 0.589132 | 6_1:+97419553 | None:intergenic |
| GTATCCACAGGCTGTAGAGG+TGG | 0.589928 | 6_1:+97419718 | None:intergenic |
| AATGGCGGTCTTGATGGTGA+TGG | 0.591018 | 6_1:+97420472 | None:intergenic |
| GCGATGCAGAAGAACGTGGT+TGG | 0.591190 | 6_1:+97420277 | None:intergenic |
| GTGGAAACCAGGGGATCCTG+TGG | 0.596117 | 6_1:-97419569 | Msa0901160:CDS |
| AGCTTTGGCTGAGGAACATG+AGG | 0.596605 | 6_1:+97419499 | None:intergenic |
| GCAGGGCAGGCCCCTCTCCG+GGG | 0.600577 | 6_1:-97419871 | Msa0901160:CDS |
| GAGGAGGAGGGAGCTTTGGA+GGG | 0.602240 | 6_1:+97420502 | None:intergenic |
| ACAAACTCAAAGATGCTGAG+AGG | 0.603103 | 6_1:-97420083 | Msa0901160:CDS |
| GCCTCCACCTCTACAGCCTG+TGG | 0.606957 | 6_1:-97419722 | Msa0901160:CDS |
| CAAACTCAAAGATGCTGAGA+GGG | 0.610630 | 6_1:-97420082 | Msa0901160:CDS |
| TGGACTCCCTTCCAGTACCA+AGG | 0.613510 | 6_1:-97419543 | Msa0901160:CDS |
| ACCACCTGGGTGGAAACCAG+GGG | 0.616693 | 6_1:-97419578 | Msa0901160:CDS |
| GGTGGAAGTGCACCCCGGAG+AGG | 0.620003 | 6_1:+97419859 | None:intergenic |
| AGGAGGAGGGAGCTTTGGAG+GGG | 0.620746 | 6_1:+97420503 | None:intergenic |
| GGAAGGTTGGGAGTGATCCA+CGG | 0.622197 | 6_1:+97420313 | None:intergenic |
| GAGAAGGGGTTGCCAAATGG+CGG | 0.622502 | 6_1:+97420457 | None:intergenic |
| TGGTGATGGGTAGTCTGAGG+AGG | 0.625548 | 6_1:+97420486 | None:intergenic |
| ATGGCGGTCTTGATGGTGAT+GGG | 0.626326 | 6_1:+97420473 | None:intergenic |
| TAGCAGGTGACTGTACAACT+TGG | 0.627325 | 6_1:+97420571 | None:intergenic |
| AAGTTGTACAGTCACCTGCT+AGG | 0.628027 | 6_1:-97420569 | Msa0901160:CDS |
| CTTGTGCTCTAGGAAGGGGT+GGG | 0.628225 | 6_1:+97420415 | None:intergenic |
| TTGGCCTTGTGAAGAAAGGA+AGG | 0.645978 | 6_1:+97420296 | None:intergenic |
| CAATTAAGCCACCACCTGGG+TGG | 0.660310 | 6_1:-97419588 | Msa0901160:CDS |
| TGATGGTGATGGGTAGTCTG+AGG | 0.664895 | 6_1:+97420483 | None:intergenic |
| TACCAATTAAGCCACCACCT+GGG | 0.694068 | 6_1:-97419591 | Msa0901160:CDS |
| TCGAGCGATGCAGAAGAACG+TGG | 0.694080 | 6_1:+97420273 | None:intergenic |
| GCTTTGGCTGAGGAACATGA+GGG | 0.732836 | 6_1:+97419500 | None:intergenic |
| TGCTAAGCAAAAGATCGACG+AGG | 0.767137 | 6_1:-97420145 | Msa0901160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAAACCAAGAGATTGAAATT+AGG | - | chr6_1:97419963-97419982 | Msa0901160:CDS | 25.0% |
| !! | GTTATATAATTTTGCAGATC+TGG | - | chr6_1:97420178-97420197 | Msa0901160:CDS | 25.0% |
| ! | AAAACCAAGAGATTGAAATT+AGG | - | chr6_1:97419963-97419982 | Msa0901160:CDS | 25.0% |
| !! | GTTATATAATTTTGCAGATC+TGG | - | chr6_1:97420178-97420197 | Msa0901160:CDS | 25.0% |
| TTCAAAGAGCTTAGTAGATA+AGG | + | chr6_1:97419613-97419632 | None:intergenic | 30.0% | |
| GAAAAGTGAAAGGATTTCTT+TGG | + | chr6_1:97419751-97419770 | None:intergenic | 30.0% | |
| ATCTCCTAATTTCAATCTCT+TGG | + | chr6_1:97419970-97419989 | None:intergenic | 30.0% | |
| AAGAGATTGAAATTAGGAGA+TGG | - | chr6_1:97419969-97419988 | Msa0901160:CDS | 30.0% | |
| ! | AATTTTGCAGATCTGGATAT+TGG | - | chr6_1:97420185-97420204 | Msa0901160:CDS | 30.0% |
| GGATATTGGATTACCAAAAT+CGG | - | chr6_1:97420199-97420218 | Msa0901160:CDS | 30.0% | |
| AACCAAAGAGAAAACAATTG+AGG | - | chr6_1:97420226-97420245 | Msa0901160:CDS | 30.0% | |
| ATATCAATAGGCAATTGTAC+AGG | + | chr6_1:97420371-97420390 | None:intergenic | 30.0% | |
| GGCTTAATTGGTATATCAAT+AGG | + | chr6_1:97420383-97420402 | None:intergenic | 30.0% | |
| TTCAAAGAGCTTAGTAGATA+AGG | + | chr6_1:97419613-97419632 | None:intergenic | 30.0% | |
| GAAAAGTGAAAGGATTTCTT+TGG | + | chr6_1:97419751-97419770 | None:intergenic | 30.0% | |
| ATCTCCTAATTTCAATCTCT+TGG | + | chr6_1:97419970-97419989 | None:intergenic | 30.0% | |
| AAGAGATTGAAATTAGGAGA+TGG | - | chr6_1:97419969-97419988 | Msa0901160:CDS | 30.0% | |
| ! | AATTTTGCAGATCTGGATAT+TGG | - | chr6_1:97420185-97420204 | Msa0901160:CDS | 30.0% |
| GGATATTGGATTACCAAAAT+CGG | - | chr6_1:97420199-97420218 | Msa0901160:CDS | 30.0% | |
| AACCAAAGAGAAAACAATTG+AGG | - | chr6_1:97420226-97420245 | Msa0901160:CDS | 30.0% | |
| ATATCAATAGGCAATTGTAC+AGG | + | chr6_1:97420371-97420390 | None:intergenic | 30.0% | |
| GGCTTAATTGGTATATCAAT+AGG | + | chr6_1:97420383-97420402 | None:intergenic | 30.0% | |
| AAGTGAAAGGATTTCTTTGG+TGG | + | chr6_1:97419748-97419767 | None:intergenic | 35.0% | |
| ! | AAACATTTGGGTTTGAAGGT+TGG | + | chr6_1:97419775-97419794 | None:intergenic | 35.0% |
| ! | CTTCAAACATTTGGGTTTGA+AGG | + | chr6_1:97419779-97419798 | None:intergenic | 35.0% |
| GGAAACAGCTTCAAACATTT+GGG | + | chr6_1:97419787-97419806 | None:intergenic | 35.0% | |
| ! | CTTTTTGATCAAGAACTTCC+TGG | + | chr6_1:97419815-97419834 | None:intergenic | 35.0% |
| !! | TCTTTGGTTTCAACCGATTT+TGG | + | chr6_1:97420215-97420234 | None:intergenic | 35.0% |
| ! | AGCCTCAATTGTTTTCTCTT+TGG | + | chr6_1:97420231-97420250 | None:intergenic | 35.0% |
| AGGCAAATTTGCAAGTGAAT+TGG | + | chr6_1:97420288-97420307 | None:intergenic | 35.0% | |
| AATTCACTTGCAAATTTGCC+TGG | - | chr6_1:97420287-97420306 | Msa0901160:CDS | 35.0% | |
| ! | ACCTCCAAATTTTACTGTTC+CGG | - | chr6_1:97420325-97420344 | Msa0901160:CDS | 35.0% |
| !! | TGAATAATTTCTGGCAGCTT+TGG | + | chr6_1:97420500-97420519 | None:intergenic | 35.0% |
| TCTCCAAGATCCAAATTAAC+TGG | + | chr6_1:97420530-97420549 | None:intergenic | 35.0% | |
| AAGTGAAAGGATTTCTTTGG+TGG | + | chr6_1:97419748-97419767 | None:intergenic | 35.0% | |
| ! | AAACATTTGGGTTTGAAGGT+TGG | + | chr6_1:97419775-97419794 | None:intergenic | 35.0% |
| ! | CTTCAAACATTTGGGTTTGA+AGG | + | chr6_1:97419779-97419798 | None:intergenic | 35.0% |
| GGAAACAGCTTCAAACATTT+GGG | + | chr6_1:97419787-97419806 | None:intergenic | 35.0% | |
| ! | CTTTTTGATCAAGAACTTCC+TGG | + | chr6_1:97419815-97419834 | None:intergenic | 35.0% |
| !! | TCTTTGGTTTCAACCGATTT+TGG | + | chr6_1:97420215-97420234 | None:intergenic | 35.0% |
| ! | AGCCTCAATTGTTTTCTCTT+TGG | + | chr6_1:97420231-97420250 | None:intergenic | 35.0% |
| AGGCAAATTTGCAAGTGAAT+TGG | + | chr6_1:97420288-97420307 | None:intergenic | 35.0% | |
| AATTCACTTGCAAATTTGCC+TGG | - | chr6_1:97420287-97420306 | Msa0901160:CDS | 35.0% | |
| ! | ACCTCCAAATTTTACTGTTC+CGG | - | chr6_1:97420325-97420344 | Msa0901160:CDS | 35.0% |
| !! | TGAATAATTTCTGGCAGCTT+TGG | + | chr6_1:97420500-97420519 | None:intergenic | 35.0% |
| TCTCCAAGATCCAAATTAAC+TGG | + | chr6_1:97420530-97420549 | None:intergenic | 35.0% | |
| TTGGAATCAACGGTGAGTTA+GGG | + | chr6_1:97419452-97419471 | None:intergenic | 40.0% | |
| ! | TTTGGAATCAACGGTGAGTT+AGG | + | chr6_1:97419453-97419472 | None:intergenic | 40.0% |
| ACAAGCACTTCTTCAGCAAA+TGG | - | chr6_1:97419584-97419603 | Msa0901160:CDS | 40.0% | |
| CTTGTGAAGAAAGGAAGGTT+GGG | + | chr6_1:97419683-97419702 | None:intergenic | 40.0% | |
| ! | AGGATTTCTTTGGTGGTAGA+AGG | + | chr6_1:97419741-97419760 | None:intergenic | 40.0% |
| !! | GAAGGTTGGTGAAAAGTGAA+AGG | + | chr6_1:97419761-97419780 | None:intergenic | 40.0% |
| CGGAAACAGCTTCAAACATT+TGG | + | chr6_1:97419788-97419807 | None:intergenic | 40.0% | |
| ATCAAGAACTTCCTGGAGTT+CGG | + | chr6_1:97419808-97419827 | None:intergenic | 40.0% | |
| ! | CTCAGCATCTTTGAGTTTGT+TGG | + | chr6_1:97419898-97419917 | None:intergenic | 40.0% |
| ACAAACTCAAAGATGCTGAG+AGG | - | chr6_1:97419898-97419917 | Msa0901160:CDS | 40.0% | |
| CAAACTCAAAGATGCTGAGA+GGG | - | chr6_1:97419899-97419918 | Msa0901160:CDS | 40.0% | |
| GCAAATTTGCCTGGAATTCA+AGG | - | chr6_1:97420296-97420315 | Msa0901160:CDS | 40.0% | |
| AACTGTTGTTCCTCAATCCT+TGG | + | chr6_1:97420458-97420477 | None:intergenic | 40.0% | |
| GGTGCGACTTGAATAATTTC+TGG | + | chr6_1:97420509-97420528 | None:intergenic | 40.0% | |
| TCAAGTCGCACCAGTTAATT+TGG | - | chr6_1:97420517-97420536 | Msa0901160:CDS | 40.0% | |
| ! | GCACCAGTTAATTTGGATCT+TGG | - | chr6_1:97420524-97420543 | Msa0901160:CDS | 40.0% |
| TCAATCTTCATCATCAGTGC+TGG | + | chr6_1:97420585-97420604 | None:intergenic | 40.0% | |
| TTGGAATCAACGGTGAGTTA+GGG | + | chr6_1:97419452-97419471 | None:intergenic | 40.0% | |
| ! | TTTGGAATCAACGGTGAGTT+AGG | + | chr6_1:97419453-97419472 | None:intergenic | 40.0% |
| ACAAGCACTTCTTCAGCAAA+TGG | - | chr6_1:97419584-97419603 | Msa0901160:CDS | 40.0% | |
| CTTGTGAAGAAAGGAAGGTT+GGG | + | chr6_1:97419683-97419702 | None:intergenic | 40.0% | |
| ! | AGGATTTCTTTGGTGGTAGA+AGG | + | chr6_1:97419741-97419760 | None:intergenic | 40.0% |
| !! | GAAGGTTGGTGAAAAGTGAA+AGG | + | chr6_1:97419761-97419780 | None:intergenic | 40.0% |
| CGGAAACAGCTTCAAACATT+TGG | + | chr6_1:97419788-97419807 | None:intergenic | 40.0% | |
| ATCAAGAACTTCCTGGAGTT+CGG | + | chr6_1:97419808-97419827 | None:intergenic | 40.0% | |
| ! | CTCAGCATCTTTGAGTTTGT+TGG | + | chr6_1:97419898-97419917 | None:intergenic | 40.0% |
| ACAAACTCAAAGATGCTGAG+AGG | - | chr6_1:97419898-97419917 | Msa0901160:CDS | 40.0% | |
| CAAACTCAAAGATGCTGAGA+GGG | - | chr6_1:97419899-97419918 | Msa0901160:CDS | 40.0% | |
| GCAAATTTGCCTGGAATTCA+AGG | - | chr6_1:97420296-97420315 | Msa0901160:CDS | 40.0% | |
| AACTGTTGTTCCTCAATCCT+TGG | + | chr6_1:97420458-97420477 | None:intergenic | 40.0% | |
| GGTGCGACTTGAATAATTTC+TGG | + | chr6_1:97420509-97420528 | None:intergenic | 40.0% | |
| TCAAGTCGCACCAGTTAATT+TGG | - | chr6_1:97420517-97420536 | Msa0901160:CDS | 40.0% | |
| ! | GCACCAGTTAATTTGGATCT+TGG | - | chr6_1:97420524-97420543 | Msa0901160:CDS | 40.0% |
| TCAATCTTCATCATCAGTGC+TGG | + | chr6_1:97420585-97420604 | None:intergenic | 40.0% | |
| TAGCAGGTGACTGTACAACT+TGG | + | chr6_1:97419413-97419432 | None:intergenic | 45.0% | |
| AAGTTGTACAGTCACCTGCT+AGG | - | chr6_1:97419412-97419431 | Msa0901160:CDS | 45.0% | |
| ! | ACGGTGAGTTAGGGTTTGTT+AGG | + | chr6_1:97419443-97419462 | None:intergenic | 45.0% |
| !! | AAGTGCTTGTGCTCTAGGAA+GGG | + | chr6_1:97419574-97419593 | None:intergenic | 45.0% |
| !! | TGAAGAAGTGCTTGTGCTCT+AGG | + | chr6_1:97419579-97419598 | None:intergenic | 45.0% |
| TATCACCCAACAAGTCCCTT+TGG | - | chr6_1:97419634-97419653 | Msa0901160:CDS | 45.0% | |
| ATCACCCAACAAGTCCCTTT+GGG | - | chr6_1:97419635-97419654 | Msa0901160:CDS | 45.0% | |
| ! | CTAACCCAAAGGGACTTGTT+GGG | + | chr6_1:97419642-97419661 | None:intergenic | 45.0% |
| ACTAACCCAAAGGGACTTGT+TGG | + | chr6_1:97419643-97419662 | None:intergenic | 45.0% | |
| ACGGAATGCACTAACCCAAA+GGG | + | chr6_1:97419652-97419671 | None:intergenic | 45.0% | |
| CCTTGTGAAGAAAGGAAGGT+TGG | + | chr6_1:97419684-97419703 | None:intergenic | 45.0% | |
| CCAACCTTCCTTTCTTCACA+AGG | - | chr6_1:97419681-97419700 | Msa0901160:CDS | 45.0% | |
| !! | TTGGCCTTGTGAAGAAAGGA+AGG | + | chr6_1:97419688-97419707 | None:intergenic | 45.0% |
| TGCTAAGCAAAAGATCGACG+AGG | - | chr6_1:97419836-97419855 | Msa0901160:CDS | 45.0% | |
| ! | ACTTTTGCACCGCCAGAATT+TGG | - | chr6_1:97420086-97420105 | Msa0901160:CDS | 45.0% |
| GCAAGTGAATTGGTATCCAC+AGG | + | chr6_1:97420278-97420297 | None:intergenic | 45.0% | |
| GCCGGAACAGTAAAATTTGG+AGG | + | chr6_1:97420329-97420348 | None:intergenic | 45.0% | |
| ! | CCAAATTTTACTGTTCCGGC+CGG | - | chr6_1:97420329-97420348 | Msa0901160:CDS | 45.0% |
| ATACCAATTAAGCCACCACC+TGG | - | chr6_1:97420389-97420408 | Msa0901160:CDS | 45.0% | |
| TACCAATTAAGCCACCACCT+GGG | - | chr6_1:97420390-97420409 | Msa0901160:CDS | 45.0% | |
| ! | CTCAATCCTTGGTACTGGAA+GGG | + | chr6_1:97420447-97420466 | None:intergenic | 45.0% |
| TGTTCCTCAATCCTTGGTAC+TGG | + | chr6_1:97420452-97420471 | None:intergenic | 45.0% | |
| TAGCAGGTGACTGTACAACT+TGG | + | chr6_1:97419413-97419432 | None:intergenic | 45.0% | |
| AAGTTGTACAGTCACCTGCT+AGG | - | chr6_1:97419412-97419431 | Msa0901160:CDS | 45.0% | |
| ! | ACGGTGAGTTAGGGTTTGTT+AGG | + | chr6_1:97419443-97419462 | None:intergenic | 45.0% |
| !! | AAGTGCTTGTGCTCTAGGAA+GGG | + | chr6_1:97419574-97419593 | None:intergenic | 45.0% |
| !! | TGAAGAAGTGCTTGTGCTCT+AGG | + | chr6_1:97419579-97419598 | None:intergenic | 45.0% |
| TATCACCCAACAAGTCCCTT+TGG | - | chr6_1:97419634-97419653 | Msa0901160:CDS | 45.0% | |
| ATCACCCAACAAGTCCCTTT+GGG | - | chr6_1:97419635-97419654 | Msa0901160:CDS | 45.0% | |
| ! | CTAACCCAAAGGGACTTGTT+GGG | + | chr6_1:97419642-97419661 | None:intergenic | 45.0% |
| ACTAACCCAAAGGGACTTGT+TGG | + | chr6_1:97419643-97419662 | None:intergenic | 45.0% | |
| ACGGAATGCACTAACCCAAA+GGG | + | chr6_1:97419652-97419671 | None:intergenic | 45.0% | |
| CCTTGTGAAGAAAGGAAGGT+TGG | + | chr6_1:97419684-97419703 | None:intergenic | 45.0% | |
| CCAACCTTCCTTTCTTCACA+AGG | - | chr6_1:97419681-97419700 | Msa0901160:CDS | 45.0% | |
| !! | TTGGCCTTGTGAAGAAAGGA+AGG | + | chr6_1:97419688-97419707 | None:intergenic | 45.0% |
| TGCTAAGCAAAAGATCGACG+AGG | - | chr6_1:97419836-97419855 | Msa0901160:CDS | 45.0% | |
| ! | ACTTTTGCACCGCCAGAATT+TGG | - | chr6_1:97420086-97420105 | Msa0901160:CDS | 45.0% |
| GCAAGTGAATTGGTATCCAC+AGG | + | chr6_1:97420278-97420297 | None:intergenic | 45.0% | |
| GCCGGAACAGTAAAATTTGG+AGG | + | chr6_1:97420329-97420348 | None:intergenic | 45.0% | |
| ! | CCAAATTTTACTGTTCCGGC+CGG | - | chr6_1:97420329-97420348 | Msa0901160:CDS | 45.0% |
| ATACCAATTAAGCCACCACC+TGG | - | chr6_1:97420389-97420408 | Msa0901160:CDS | 45.0% | |
| TACCAATTAAGCCACCACCT+GGG | - | chr6_1:97420390-97420409 | Msa0901160:CDS | 45.0% | |
| ! | CTCAATCCTTGGTACTGGAA+GGG | + | chr6_1:97420447-97420466 | None:intergenic | 45.0% |
| TGTTCCTCAATCCTTGGTAC+TGG | + | chr6_1:97420452-97420471 | None:intergenic | 45.0% | |
| TTTGTTAGGCCTAGCCTAGC+AGG | + | chr6_1:97419429-97419448 | None:intergenic | 50.0% | |
| ! | GGGGTAGGGTTTGGAATCAA+CGG | + | chr6_1:97419462-97419481 | None:intergenic | 50.0% |
| !! | TGATGGTGATGGGTAGTCTG+AGG | + | chr6_1:97419501-97419520 | None:intergenic | 50.0% |
| !! | ATGGCGGTCTTGATGGTGAT+GGG | + | chr6_1:97419511-97419530 | None:intergenic | 50.0% |
| !! | AATGGCGGTCTTGATGGTGA+TGG | + | chr6_1:97419512-97419531 | None:intergenic | 50.0% |
| TCACCATCAAGACCGCCATT+TGG | - | chr6_1:97419512-97419531 | Msa0901160:CDS | 50.0% | |
| TTGCCAAATGGCGGTCTTGA+TGG | + | chr6_1:97419518-97419537 | None:intergenic | 50.0% | |
| AGAGAGTAGAGCAGGAGAAG+GGG | + | chr6_1:97419541-97419560 | None:intergenic | 50.0% | |
| GAGAGAGTAGAGCAGGAGAA+GGG | + | chr6_1:97419542-97419561 | None:intergenic | 50.0% | |
| AGAGAGAGTAGAGCAGGAGA+AGG | + | chr6_1:97419543-97419562 | None:intergenic | 50.0% | |
| !! | AGTGCTTGTGCTCTAGGAAG+GGG | + | chr6_1:97419573-97419592 | None:intergenic | 50.0% |
| !! | GAAGTGCTTGTGCTCTAGGA+AGG | + | chr6_1:97419575-97419594 | None:intergenic | 50.0% |
| CACGGAATGCACTAACCCAA+AGG | + | chr6_1:97419653-97419672 | None:intergenic | 50.0% | |
| !! | CTTTGGGTTAGTGCATTCCG+TGG | - | chr6_1:97419651-97419670 | Msa0901160:CDS | 50.0% |
| !! | GTGGTTGGCCTTGTGAAGAA+AGG | + | chr6_1:97419692-97419711 | None:intergenic | 50.0% |
| ! | TGAAGCTGTTTCCGAACTCC+AGG | - | chr6_1:97419794-97419813 | Msa0901160:CDS | 50.0% |
| CAGCTTCAGCTGAGACGATA+CGG | + | chr6_1:97420027-97420046 | None:intergenic | 50.0% | |
| GCTCTCATTTGCTCGTCTTG+CGG | + | chr6_1:97420152-97420171 | None:intergenic | 50.0% | |
| TTGGTATCCACAGGCTGTAG+AGG | + | chr6_1:97420269-97420288 | None:intergenic | 50.0% | |
| GGTAGCAGTCCTTGAATTCC+AGG | + | chr6_1:97420308-97420327 | None:intergenic | 50.0% | |
| CCGGCCGGAACAGTAAAATT+TGG | + | chr6_1:97420332-97420351 | None:intergenic | 50.0% | |
| ! | ATTTTACTGTTCCGGCCGGT+TGG | - | chr6_1:97420333-97420352 | Msa0901160:CDS | 50.0% |
| GGCAATTGTACAGGCATTCC+AGG | + | chr6_1:97420362-97420381 | None:intergenic | 50.0% | |
| ! | CCTCAATCCTTGGTACTGGA+AGG | + | chr6_1:97420448-97420467 | None:intergenic | 50.0% |
| CCTTCCAGTACCAAGGATTG+AGG | - | chr6_1:97420445-97420464 | Msa0901160:CDS | 50.0% | |
| GCTTTGGCTGAGGAACATGA+GGG | + | chr6_1:97420484-97420503 | None:intergenic | 50.0% | |
| ! | AGCTTTGGCTGAGGAACATG+AGG | + | chr6_1:97420485-97420504 | None:intergenic | 50.0% |
| !! | ATTTCTGGCAGCTTTGGCTG+AGG | + | chr6_1:97420494-97420513 | None:intergenic | 50.0% |
| TTTGTTAGGCCTAGCCTAGC+AGG | + | chr6_1:97419429-97419448 | None:intergenic | 50.0% | |
| ! | GGGGTAGGGTTTGGAATCAA+CGG | + | chr6_1:97419462-97419481 | None:intergenic | 50.0% |
| !! | TGATGGTGATGGGTAGTCTG+AGG | + | chr6_1:97419501-97419520 | None:intergenic | 50.0% |
| !! | ATGGCGGTCTTGATGGTGAT+GGG | + | chr6_1:97419511-97419530 | None:intergenic | 50.0% |
| !! | AATGGCGGTCTTGATGGTGA+TGG | + | chr6_1:97419512-97419531 | None:intergenic | 50.0% |
| TCACCATCAAGACCGCCATT+TGG | - | chr6_1:97419512-97419531 | Msa0901160:CDS | 50.0% | |
| TTGCCAAATGGCGGTCTTGA+TGG | + | chr6_1:97419518-97419537 | None:intergenic | 50.0% | |
| AGAGAGTAGAGCAGGAGAAG+GGG | + | chr6_1:97419541-97419560 | None:intergenic | 50.0% | |
| GAGAGAGTAGAGCAGGAGAA+GGG | + | chr6_1:97419542-97419561 | None:intergenic | 50.0% | |
| AGAGAGAGTAGAGCAGGAGA+AGG | + | chr6_1:97419543-97419562 | None:intergenic | 50.0% | |
| !! | AGTGCTTGTGCTCTAGGAAG+GGG | + | chr6_1:97419573-97419592 | None:intergenic | 50.0% |
| !! | GAAGTGCTTGTGCTCTAGGA+AGG | + | chr6_1:97419575-97419594 | None:intergenic | 50.0% |
| CACGGAATGCACTAACCCAA+AGG | + | chr6_1:97419653-97419672 | None:intergenic | 50.0% | |
| !! | CTTTGGGTTAGTGCATTCCG+TGG | - | chr6_1:97419651-97419670 | Msa0901160:CDS | 50.0% |
| !! | GTGGTTGGCCTTGTGAAGAA+AGG | + | chr6_1:97419692-97419711 | None:intergenic | 50.0% |
| ! | TGAAGCTGTTTCCGAACTCC+AGG | - | chr6_1:97419794-97419813 | Msa0901160:CDS | 50.0% |
| CAGCTTCAGCTGAGACGATA+CGG | + | chr6_1:97420027-97420046 | None:intergenic | 50.0% | |
| GCTCTCATTTGCTCGTCTTG+CGG | + | chr6_1:97420152-97420171 | None:intergenic | 50.0% | |
| TTGGTATCCACAGGCTGTAG+AGG | + | chr6_1:97420269-97420288 | None:intergenic | 50.0% | |
| GGTAGCAGTCCTTGAATTCC+AGG | + | chr6_1:97420308-97420327 | None:intergenic | 50.0% | |
| CCGGCCGGAACAGTAAAATT+TGG | + | chr6_1:97420332-97420351 | None:intergenic | 50.0% | |
| ! | ATTTTACTGTTCCGGCCGGT+TGG | - | chr6_1:97420333-97420352 | Msa0901160:CDS | 50.0% |
| GGCAATTGTACAGGCATTCC+AGG | + | chr6_1:97420362-97420381 | None:intergenic | 50.0% | |
| ! | CCTCAATCCTTGGTACTGGA+AGG | + | chr6_1:97420448-97420467 | None:intergenic | 50.0% |
| CCTTCCAGTACCAAGGATTG+AGG | - | chr6_1:97420445-97420464 | Msa0901160:CDS | 50.0% | |
| GCTTTGGCTGAGGAACATGA+GGG | + | chr6_1:97420484-97420503 | None:intergenic | 50.0% | |
| ! | AGCTTTGGCTGAGGAACATG+AGG | + | chr6_1:97420485-97420504 | None:intergenic | 50.0% |
| !! | ATTTCTGGCAGCTTTGGCTG+AGG | + | chr6_1:97420494-97420513 | None:intergenic | 50.0% |
| GTACAGTCACCTGCTAGGCT+AGG | - | chr6_1:97419417-97419436 | Msa0901160:CDS | 55.0% | |
| !! | AGCTTTGGAGGGGTAGGGTT+TGG | + | chr6_1:97419471-97419490 | None:intergenic | 55.0% |
| GATGGGTAGTCTGAGGAGGA+GGG | + | chr6_1:97419494-97419513 | None:intergenic | 55.0% | |
| ! | TGATGGGTAGTCTGAGGAGG+AGG | + | chr6_1:97419495-97419514 | None:intergenic | 55.0% |
| !! | TGGTGATGGGTAGTCTGAGG+AGG | + | chr6_1:97419498-97419517 | None:intergenic | 55.0% |
| GAGAAGGGGTTGCCAAATGG+CGG | + | chr6_1:97419527-97419546 | None:intergenic | 55.0% | |
| CAGGAGAAGGGGTTGCCAAA+TGG | + | chr6_1:97419530-97419549 | None:intergenic | 55.0% | |
| GGGAGAAGAGAGAGTAGAGC+AGG | + | chr6_1:97419549-97419568 | None:intergenic | 55.0% | |
| !! | CTTGTGCTCTAGGAAGGGGT+GGG | + | chr6_1:97419569-97419588 | None:intergenic | 55.0% |
| GGAAGGTTGGGAGTGATCCA+CGG | + | chr6_1:97419671-97419690 | None:intergenic | 55.0% | |
| GCGATGCAGAAGAACGTGGT+TGG | + | chr6_1:97419707-97419726 | None:intergenic | 55.0% | |
| TCGAGCGATGCAGAAGAACG+TGG | + | chr6_1:97419711-97419730 | None:intergenic | 55.0% | |
| CAGCTGAGACGATACGGTTG+AGG | + | chr6_1:97420021-97420040 | None:intergenic | 55.0% | |
| ! | CACCGCCAGAATTTGGAGCA+GGG | - | chr6_1:97420093-97420112 | Msa0901160:CDS | 55.0% |
| TGCCCTGCTCCAAATTCTGG+CGG | + | chr6_1:97420098-97420117 | None:intergenic | 55.0% | |
| ATTTGCTCGTCTTGCGGTGC+AGG | + | chr6_1:97420146-97420165 | None:intergenic | 55.0% | |
| GTATCCACAGGCTGTAGAGG+TGG | + | chr6_1:97420266-97420285 | None:intergenic | 55.0% | |
| AGGCATTCCAGGCTTCCAAC+CGG | + | chr6_1:97420351-97420370 | None:intergenic | 55.0% | |
| ! | CACCCAGGTGGTGGCTTAAT+TGG | + | chr6_1:97420395-97420414 | None:intergenic | 55.0% |
| CAATTAAGCCACCACCTGGG+TGG | - | chr6_1:97420393-97420412 | Msa0901160:CDS | 55.0% | |
| TGGACTCCCTTCCAGTACCA+AGG | - | chr6_1:97420438-97420457 | Msa0901160:CDS | 55.0% | |
| GTACAGTCACCTGCTAGGCT+AGG | - | chr6_1:97419417-97419436 | Msa0901160:CDS | 55.0% | |
| !! | AGCTTTGGAGGGGTAGGGTT+TGG | + | chr6_1:97419471-97419490 | None:intergenic | 55.0% |
| GATGGGTAGTCTGAGGAGGA+GGG | + | chr6_1:97419494-97419513 | None:intergenic | 55.0% | |
| ! | TGATGGGTAGTCTGAGGAGG+AGG | + | chr6_1:97419495-97419514 | None:intergenic | 55.0% |
| !! | TGGTGATGGGTAGTCTGAGG+AGG | + | chr6_1:97419498-97419517 | None:intergenic | 55.0% |
| GAGAAGGGGTTGCCAAATGG+CGG | + | chr6_1:97419527-97419546 | None:intergenic | 55.0% | |
| CAGGAGAAGGGGTTGCCAAA+TGG | + | chr6_1:97419530-97419549 | None:intergenic | 55.0% | |
| GGGAGAAGAGAGAGTAGAGC+AGG | + | chr6_1:97419549-97419568 | None:intergenic | 55.0% | |
| !! | CTTGTGCTCTAGGAAGGGGT+GGG | + | chr6_1:97419569-97419588 | None:intergenic | 55.0% |
| GGAAGGTTGGGAGTGATCCA+CGG | + | chr6_1:97419671-97419690 | None:intergenic | 55.0% | |
| GCGATGCAGAAGAACGTGGT+TGG | + | chr6_1:97419707-97419726 | None:intergenic | 55.0% | |
| TCGAGCGATGCAGAAGAACG+TGG | + | chr6_1:97419711-97419730 | None:intergenic | 55.0% | |
| CAGCTGAGACGATACGGTTG+AGG | + | chr6_1:97420021-97420040 | None:intergenic | 55.0% | |
| ! | CACCGCCAGAATTTGGAGCA+GGG | - | chr6_1:97420093-97420112 | Msa0901160:CDS | 55.0% |
| TGCCCTGCTCCAAATTCTGG+CGG | + | chr6_1:97420098-97420117 | None:intergenic | 55.0% | |
| ATTTGCTCGTCTTGCGGTGC+AGG | + | chr6_1:97420146-97420165 | None:intergenic | 55.0% | |
| GTATCCACAGGCTGTAGAGG+TGG | + | chr6_1:97420266-97420285 | None:intergenic | 55.0% | |
| AGGCATTCCAGGCTTCCAAC+CGG | + | chr6_1:97420351-97420370 | None:intergenic | 55.0% | |
| ! | CACCCAGGTGGTGGCTTAAT+TGG | + | chr6_1:97420395-97420414 | None:intergenic | 55.0% |
| CAATTAAGCCACCACCTGGG+TGG | - | chr6_1:97420393-97420412 | Msa0901160:CDS | 55.0% | |
| TGGACTCCCTTCCAGTACCA+AGG | - | chr6_1:97420438-97420457 | Msa0901160:CDS | 55.0% | |
| !! | GAGGGAGCTTTGGAGGGGTA+GGG | + | chr6_1:97419476-97419495 | None:intergenic | 60.0% |
| !! | AGGAGGAGGGAGCTTTGGAG+GGG | + | chr6_1:97419481-97419500 | None:intergenic | 60.0% |
| !! | GAGGAGGAGGGAGCTTTGGA+GGG | + | chr6_1:97419482-97419501 | None:intergenic | 60.0% |
| ! | TGAGGAGGAGGGAGCTTTGG+AGG | + | chr6_1:97419483-97419502 | None:intergenic | 60.0% |
| GTCTGAGGAGGAGGGAGCTT+TGG | + | chr6_1:97419486-97419505 | None:intergenic | 60.0% | |
| !! | GCTTGTGCTCTAGGAAGGGG+TGG | + | chr6_1:97419570-97419589 | None:intergenic | 60.0% |
| ! | GCACCGCCAGAATTTGGAGC+AGG | - | chr6_1:97420092-97420111 | Msa0901160:CDS | 60.0% |
| ! | GCCAGAATTTGGAGCAGGGC+AGG | - | chr6_1:97420097-97420116 | Msa0901160:CDS | 60.0% |
| GCCTGCCCTGCTCCAAATTC+TGG | + | chr6_1:97420101-97420120 | None:intergenic | 60.0% | |
| TCCACAGGCTGTAGAGGTGG+AGG | + | chr6_1:97420263-97420282 | None:intergenic | 60.0% | |
| ATTCCAGGCTTCCAACCGGC+CGG | + | chr6_1:97420347-97420366 | None:intergenic | 60.0% | |
| CACCACCTGGGTGGAAACCA+GGG | - | chr6_1:97420402-97420421 | Msa0901160:CDS | 60.0% | |
| ACCACCTGGGTGGAAACCAG+GGG | - | chr6_1:97420403-97420422 | Msa0901160:CDS | 60.0% | |
| GTGGAAACCAGGGGATCCTG+TGG | - | chr6_1:97420412-97420431 | Msa0901160:CDS | 60.0% | |
| ACCAGGGGATCCTGTGGCAT+TGG | - | chr6_1:97420418-97420437 | Msa0901160:CDS | 60.0% | |
| TCCAATGCCACAGGATCCCC+TGG | + | chr6_1:97420422-97420441 | None:intergenic | 60.0% | |
| GGAAGGGAGTCCAATGCCAC+AGG | + | chr6_1:97420431-97420450 | None:intergenic | 60.0% | |
| !! | GAGGGAGCTTTGGAGGGGTA+GGG | + | chr6_1:97419476-97419495 | None:intergenic | 60.0% |
| !! | AGGAGGAGGGAGCTTTGGAG+GGG | + | chr6_1:97419481-97419500 | None:intergenic | 60.0% |
| !! | GAGGAGGAGGGAGCTTTGGA+GGG | + | chr6_1:97419482-97419501 | None:intergenic | 60.0% |
| ! | TGAGGAGGAGGGAGCTTTGG+AGG | + | chr6_1:97419483-97419502 | None:intergenic | 60.0% |
| GTCTGAGGAGGAGGGAGCTT+TGG | + | chr6_1:97419486-97419505 | None:intergenic | 60.0% | |
| !! | GCTTGTGCTCTAGGAAGGGG+TGG | + | chr6_1:97419570-97419589 | None:intergenic | 60.0% |
| ! | GCACCGCCAGAATTTGGAGC+AGG | - | chr6_1:97420092-97420111 | Msa0901160:CDS | 60.0% |
| ! | GCCAGAATTTGGAGCAGGGC+AGG | - | chr6_1:97420097-97420116 | Msa0901160:CDS | 60.0% |
| GCCTGCCCTGCTCCAAATTC+TGG | + | chr6_1:97420101-97420120 | None:intergenic | 60.0% | |
| TCCACAGGCTGTAGAGGTGG+AGG | + | chr6_1:97420263-97420282 | None:intergenic | 60.0% | |
| ATTCCAGGCTTCCAACCGGC+CGG | + | chr6_1:97420347-97420366 | None:intergenic | 60.0% | |
| CACCACCTGGGTGGAAACCA+GGG | - | chr6_1:97420402-97420421 | Msa0901160:CDS | 60.0% | |
| ACCACCTGGGTGGAAACCAG+GGG | - | chr6_1:97420403-97420422 | Msa0901160:CDS | 60.0% | |
| GTGGAAACCAGGGGATCCTG+TGG | - | chr6_1:97420412-97420431 | Msa0901160:CDS | 60.0% | |
| ACCAGGGGATCCTGTGGCAT+TGG | - | chr6_1:97420418-97420437 | Msa0901160:CDS | 60.0% | |
| TCCAATGCCACAGGATCCCC+TGG | + | chr6_1:97420422-97420441 | None:intergenic | 60.0% | |
| GGAAGGGAGTCCAATGCCAC+AGG | + | chr6_1:97420431-97420450 | None:intergenic | 60.0% | |
| !! | GGAGGGAGCTTTGGAGGGGT+AGG | + | chr6_1:97419477-97419496 | None:intergenic | 65.0% |
| ! | TGGAAGTGCACCCCGGAGAG+GGG | + | chr6_1:97420123-97420142 | None:intergenic | 65.0% |
| ! | GTGGAAGTGCACCCCGGAGA+GGG | + | chr6_1:97420124-97420143 | None:intergenic | 65.0% |
| ! | GTGCAGGTGGAAGTGCACCC+CGG | + | chr6_1:97420130-97420149 | None:intergenic | 65.0% |
| TGCTCGTCTTGCGGTGCAGG+TGG | + | chr6_1:97420143-97420162 | None:intergenic | 65.0% | |
| GCCTCCACCTCTACAGCCTG+TGG | - | chr6_1:97420259-97420278 | Msa0901160:CDS | 65.0% | |
| CCTGGTTTCCACCCAGGTGG+TGG | + | chr6_1:97420404-97420423 | None:intergenic | 65.0% | |
| CCACCACCTGGGTGGAAACC+AGG | - | chr6_1:97420401-97420420 | Msa0901160:CDS | 65.0% | |
| TCCCCTGGTTTCCACCCAGG+TGG | + | chr6_1:97420407-97420426 | None:intergenic | 65.0% | |
| GGATCCCCTGGTTTCCACCC+AGG | + | chr6_1:97420410-97420429 | None:intergenic | 65.0% | |
| !! | GGAGGGAGCTTTGGAGGGGT+AGG | + | chr6_1:97419477-97419496 | None:intergenic | 65.0% |
| ! | TGGAAGTGCACCCCGGAGAG+GGG | + | chr6_1:97420123-97420142 | None:intergenic | 65.0% |
| ! | GTGGAAGTGCACCCCGGAGA+GGG | + | chr6_1:97420124-97420143 | None:intergenic | 65.0% |
| ! | GTGCAGGTGGAAGTGCACCC+CGG | + | chr6_1:97420130-97420149 | None:intergenic | 65.0% |
| TGCTCGTCTTGCGGTGCAGG+TGG | + | chr6_1:97420143-97420162 | None:intergenic | 65.0% | |
| GCCTCCACCTCTACAGCCTG+TGG | - | chr6_1:97420259-97420278 | Msa0901160:CDS | 65.0% | |
| CCTGGTTTCCACCCAGGTGG+TGG | + | chr6_1:97420404-97420423 | None:intergenic | 65.0% | |
| CCACCACCTGGGTGGAAACC+AGG | - | chr6_1:97420401-97420420 | Msa0901160:CDS | 65.0% | |
| TCCCCTGGTTTCCACCCAGG+TGG | + | chr6_1:97420407-97420426 | None:intergenic | 65.0% | |
| GGATCCCCTGGTTTCCACCC+AGG | + | chr6_1:97420410-97420429 | None:intergenic | 65.0% | |
| ! | GGTGGAAGTGCACCCCGGAG+AGG | + | chr6_1:97420125-97420144 | None:intergenic | 70.0% |
| GTTCCGGCCGGTTGGAAGCC+TGG | - | chr6_1:97420341-97420360 | Msa0901160:CDS | 70.0% | |
| ! | GGTGGAAGTGCACCCCGGAG+AGG | + | chr6_1:97420125-97420144 | None:intergenic | 70.0% |
| GTTCCGGCCGGTTGGAAGCC+TGG | - | chr6_1:97420341-97420360 | Msa0901160:CDS | 70.0% | |
| GAGCAGGGCAGGCCCCTCTC+CGG | - | chr6_1:97420108-97420127 | Msa0901160:CDS | 75.0% | |
| AGCAGGGCAGGCCCCTCTCC+GGG | - | chr6_1:97420109-97420128 | Msa0901160:CDS | 75.0% | |
| GAGCAGGGCAGGCCCCTCTC+CGG | - | chr6_1:97420108-97420127 | Msa0901160:CDS | 75.0% | |
| AGCAGGGCAGGCCCCTCTCC+GGG | - | chr6_1:97420109-97420128 | Msa0901160:CDS | 75.0% | |
| ! | GCAGGGCAGGCCCCTCTCCG+GGG | - | chr6_1:97420110-97420129 | Msa0901160:CDS | 80.0% |
| ! | GCAGGGCAGGCCCCTCTCCG+GGG | - | chr6_1:97420110-97420129 | Msa0901160:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 97419399 | 97420604 | 97419399 | ID=Msa0901160;Name=Msa0901160 |
| chr6_1 | mRNA | 97419399 | 97420604 | 97419399 | ID=Msa0901160-mRNA-1;Parent=Msa0901160;Name=Msa0901160-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|-1|0|1|-1|1|1|0|401 |
| chr6_1 | exon | 97419399 | 97420604 | 97419399 | ID=Msa0901160-mRNA-1:exon:17129;Parent=Msa0901160-mRNA-1 |
| chr6_1 | CDS | 97419399 | 97420604 | 97419399 | ID=Msa0901160-mRNA-1:cds;Parent=Msa0901160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
