AlfalfaGEDB | Msa0901160

M. sativa cultivar zhongmu-4 / Msa0901160

KEGG: -
GO: GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141
PFAM: PF10018.12

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0901160	XP_003620733.2	97.007	401	11	1	1	401	1	400	0.0	766

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0901160	sp\|Q9LZ00\|MED4_ARATH	56.872	422	130	9	1	384	1	408	1.30e-128	380

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0901160	G7KQF7	97.007	401	11	1	1	401	1	400	0.0	766

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005000	Msa0901160	0.807650	4.556411e-50	-8.615850e-47
Msa0023830	Msa0901160	0.833125	6.380676e-56	-8.615850e-47
Msa0030310	Msa0901160	-0.815798	7.686850e-52	-8.615850e-47
Msa0032840	Msa0901160	0.833816	4.290686e-56	-8.615850e-47
Msa0052350	Msa0901160	0.809368	1.959148e-50	-8.615850e-47
Msa0097360	Msa0901160	0.805727	1.160846e-49	-8.615850e-47
Msa0098390	Msa0901160	0.812511	4.087493e-51	-8.615850e-47
Msa0112300	Msa0901160	0.810750	9.869797e-51	-8.615850e-47
Msa0127310	Msa0901160	-0.801885	7.291710e-49	-8.615850e-47
Msa0143080	Msa0901160	-0.824979	6.018648e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0901160	MtrunA17_Chr6g0487271	97.007	401	11	1	1	401	1	400	0.0	766
Msa0901160	MtrunA17_Chr8g0371901	82.946	387	58	5	1	383	1	383	0.0	622

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0901160	AT5G02850.1	56.872	422	130	9	1	384	1	408	1.32e-129	380

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Find 134 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAAGAGATTGAAATT+AGG	0.343447	6_1:-97420018	Msa0901160:CDS
AAACATTTGGGTTTGAAGGT+TGG	0.480073	6_1:+97420209	None:intergenic
AACCAAAGAGAAAACAATTG+AGG	0.581394	6_1:-97419755	Msa0901160:CDS
AACTGTTGTTCCTCAATCCT+TGG	0.432983	6_1:+97419526	None:intergenic
AAGAGATTGAAATTAGGAGA+TGG	0.566608	6_1:-97420012	Msa0901160:CDS
AAGTGAAAGGATTTCTTTGG+TGG	0.499520	6_1:+97420236	None:intergenic
AAGTGCTTGTGCTCTAGGAA+GGG	0.584261	6_1:+97420410	None:intergenic
AAGTTGTACAGTCACCTGCT+AGG	0.628027	6_1:-97420569	Msa0901160:CDS
AATGGCGGTCTTGATGGTGA+TGG	0.591018	6_1:+97420472	None:intergenic
AATTCACTTGCAAATTTGCC+TGG	0.406267	6_1:-97419694	Msa0901160:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCAAAGAGCTTAGTAGATA+AGG	+	chr6_1:97419613-97419632	None:intergenic	30.0%
GAAAAGTGAAAGGATTTCTT+TGG	+	chr6_1:97419751-97419770	None:intergenic	30.0%
ATCTCCTAATTTCAATCTCT+TGG	+	chr6_1:97419970-97419989	None:intergenic	30.0%
AAGAGATTGAAATTAGGAGA+TGG	-	chr6_1:97419969-97419988	Msa0901160:CDS	30.0%
GGATATTGGATTACCAAAAT+CGG	-	chr6_1:97420199-97420218	Msa0901160:CDS	30.0%
AACCAAAGAGAAAACAATTG+AGG	-	chr6_1:97420226-97420245	Msa0901160:CDS	30.0%
ATATCAATAGGCAATTGTAC+AGG	+	chr6_1:97420371-97420390	None:intergenic	30.0%
GGCTTAATTGGTATATCAAT+AGG	+	chr6_1:97420383-97420402	None:intergenic	30.0%
TTCAAAGAGCTTAGTAGATA+AGG	+	chr6_1:97419613-97419632	None:intergenic	30.0%
GAAAAGTGAAAGGATTTCTT+TGG	+	chr6_1:97419751-97419770	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	97419399	97420604	97419399	ID=Msa0901160;Name=Msa0901160
chr6_1	mRNA	97419399	97420604	97419399	ID=Msa0901160-mRNA-1;Parent=Msa0901160;Name=Msa0901160-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|401
chr6_1	exon	97419399	97420604	97419399	ID=Msa0901160-mRNA-1:exon:17129;Parent=Msa0901160-mRNA-1
chr6_1	CDS	97419399	97420604	97419399	ID=Msa0901160-mRNA-1:cds;Parent=Msa0901160-mRNA-1

Gene Sequence

>Msa0901160

ATGCTTCAACACCAAGTTGTACAGTCACCTGCTAGGCTAGGCCTAACAAACCCTAACTCACCGTTGATTCCAAACCCTACCCCTCCAAAGCTCCCTCCTCCTCAGACTACCCATCACCATCAAGACCGCCATTTGGCAACCCCTTCTCCTGCTCTACTCTCTCTTCTCCCACCCCTTCCTAGAGCACAAGCACTTCTTCAGCAAATGGCTTCCTTATCTACTAAGCTCTTTGAAGTATCACCCAACAAGTCCCTTTGGGTTAGTGCATTCCGTGGATCACTCCCAACCTTCCTTTCTTCACAAGGCCAACCACGTTCTTCTGCATCGCTCGACTCATCTCCTTCTACCACCAAAGAAATCCTTTCACTTTTCACCAACCTTCAAACCCAAATGTTTGAAGCTGTTTCCGAACTCCAGGAAGTTCTTGATCAAAAAGATGCTAAGCAAAAGATCGACGAGGAAATTCGCTCAAAAGATTCAGCACTTCTTGCATTTGCCAACAAACTCAAAGATGCTGAGAGGGTACTTGATATTCTTGTTGATGATTACTCTGATTATCGCAGCAAAACCAAGAGATTGAAATTAGGAGATGGAAGTGAAGATGATTCTTCTTTGACTACCTCAACCGTATCGTCTCAGCTGAAGCTGTCAGATATATTATCATATGCTCATCGAATAAGTTATACAACTTTTGCACCGCCAGAATTTGGAGCAGGGCAGGCCCCTCTCCGGGGTGCACTTCCACCTGCACCGCAAGACGAGCAAATGAGAGCTTCACAGTTATATAATTTTGCAGATCTGGATATTGGATTACCAAAATCGGTTGAAACCAAAGAGAAAACAATTGAGGCTATTGTTGAGCCTCCACCTCTACAGCCTGTGGATACCAATTCACTTGCAAATTTGCCTGGAATTCAAGGACTGCTACCTCCAAATTTTACTGTTCCGGCCGGTTGGAAGCCTGGAATGCCTGTACAATTGCCTATTGATATACCAATTAAGCCACCACCTGGGTGGAAACCAGGGGATCCTGTGGCATTGGACTCCCTTCCAGTACCAAGGATTGAGGAACAACAGTTGCACCCTCATGTTCCTCAGCCAAAGCTGCCAGAAATTATTCAAGTCGCACCAGTTAATTTGGATCTTGGAGAAAGTGACAGTAGTGACTATAGTAGTGATGATGCCAGCACTGATGATGAAGATTGA

Protein sequence

>Msa0901160

MLQHQVVQSPARLGLTNPNSPLIPNPTPPKLPPPQTTHHHQDRHLATPSPALLSLLPPLPRAQALLQQMASLSTKLFEVSPNKSLWVSAFRGSLPTFLSSQGQPRSSASLDSSPSTTKEILSLFTNLQTQMFEAVSELQEVLDQKDAKQKIDEEIRSKDSALLAFANKLKDAERVLDILVDDYSDYRSKTKRLKLGDGSEDDSSLTTSTVSSQLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFADLDIGLPKSVETKEKTIEAIVEPPPLQPVDTNSLANLPGIQGLLPPNFTVPAGWKPGMPVQLPIDIPIKPPPGWKPGDPVALDSLPVPRIEEQQLHPHVPQPKLPEIIQVAPVNLDLGESDSSDYSSDDASTDDED*