AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0795080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0795080 MtrunA17_Chr5g0394631 78.017 232 34 3 1 232 1 215 4.02e-121 352
Msa0795080 MtrunA17_Chr5g0394631 68.617 188 49 5 1 184 214 395 1.57e-76 239
Msa0795080 MtrunA17_Chr5g0394621 78.191 188 41 0 1 188 1 188 1.38e-102 298
Msa0795080 MtrunA17_Chr5g0394681 100.000 113 0 0 183 295 278 390 8.99e-82 252
Msa0795080 MtrunA17_Chr1g0204951 61.905 189 68 2 1 187 1 187 2.00e-78 236
Msa0795080 MtrunA17_Chr1g0204971 59.259 189 73 2 1 187 1 187 2.65e-75 228
Msa0795080 MtrunA17_Chr4g0059181 80.531 113 22 0 183 295 280 392 1.84e-67 215
Msa0795080 MtrunA17_Chr3g0117811 78.761 113 24 0 183 295 251 363 3.26e-66 211
Msa0795080 MtrunA17_Chr6g0450871 78.761 113 24 0 183 295 263 375 3.23e-64 206
Msa0795080 MtrunA17_Chr1g0205071 78.761 113 24 0 183 295 270 382 1.61e-62 202
Msa0795080 MtrunA17_Chr7g0273661 41.667 156 88 1 17 172 4 156 3.38e-40 137
Msa0795080 MtrunA17_Chr7g0223361 39.181 171 94 3 17 184 4 167 2.60e-35 125
Msa0795080 MtrunA17_Chr7g0223351 38.788 165 96 3 20 184 7 166 1.73e-32 118
Msa0795080 MtrunA17_Chr4g0075541 39.806 103 61 1 183 285 258 359 4.50e-19 86.3
Msa0795080 MtrunA17_Chr4g0047211 40.594 101 58 1 187 285 216 316 7.05e-19 85.5
Msa0795080 MtrunA17_Chr4g0047191 40.594 101 58 1 187 285 221 321 7.10e-19 85.5
Msa0795080 MtrunA17_Chr3g0090261 40.909 88 52 0 183 270 253 340 1.19e-18 85.1
Msa0795080 MtrunA17_Chr4g0047201 44.186 86 48 0 187 272 377 462 3.30e-18 84.7
Msa0795080 MtrunA17_Chr2g0282321 35.537 121 70 3 183 295 334 454 2.18e-17 82.0
Msa0795080 MtrunA17_Chr5g0406251 31.250 112 77 0 183 294 461 572 4.53e-17 81.3
Msa0795080 MtrunA17_Chr5g0427651 41.837 98 52 1 184 276 818 915 3.42e-16 79.0
Msa0795080 MtrunA17_Chr3g0117731 38.372 86 53 0 187 272 232 317 5.11e-16 77.4
Msa0795080 MtrunA17_Chr4g0059121 37.209 86 54 0 187 272 233 318 9.45e-16 76.6
Msa0795080 MtrunA17_Chr3g0143531 38.095 84 52 0 183 266 191 274 1.69e-15 75.1
Msa0795080 MtrunA17_Chr1g0211611 31.858 113 76 1 183 294 467 579 3.98e-15 75.5
Msa0795080 MtrunA17_Chr6g0482711 34.951 103 67 0 183 285 829 931 9.57e-15 74.7
Msa0795080 MtrunA17_Chr1g0202101 36.250 80 50 1 183 262 449 527 1.40e-13 70.9
Msa0795080 MtrunA17_Chr4g0065211 35.000 80 52 0 193 272 1311 1390 3.48e-13 70.1
Msa0795080 MtrunA17_Chr2g0310781 35.000 80 52 0 193 272 1035 1114 6.07e-13 69.3
Msa0795080 MtrunA17_Chr8g0357611 35.556 90 54 1 194 279 1561 1650 6.47e-13 69.3
Msa0795080 MtrunA17_Chr2g0310761 35.227 88 53 1 193 276 1129 1216 9.58e-13 68.6
Msa0795080 MtrunA17_Chr1g0191171 33.945 109 68 1 165 269 836 944 9.72e-13 68.6
Msa0795080 MtrunA17_Chr4g0072741 29.134 127 85 2 151 272 978 1104 1.00e-12 68.6
Msa0795080 MtrunA17_Chr3g0105891 35.227 88 53 1 183 266 493 580 1.46e-12 67.8
Msa0795080 MtrunA17_Chr8g0392871 34.483 87 57 0 183 269 908 994 1.65e-12 67.8
Msa0795080 MtrunA17_Chr1g0151541 39.080 87 53 0 183 269 832 918 1.95e-12 67.8
Msa0795080 MtrunA17_Chr2g0305141 32.468 77 52 0 193 269 1273 1349 4.72e-12 66.6
Msa0795080 MtrunA17_Chr5g0431191 33.333 96 59 2 183 273 496 591 6.57e-12 65.9
Msa0795080 MtrunA17_Chr7g0244621 36.585 82 52 0 185 266 225 306 1.01e-11 64.7
Msa0795080 MtrunA17_Chr1g0179331 37.931 87 54 0 183 269 726 812 1.29e-11 65.1
Msa0795080 MtrunA17_Chr3g0132791 36.047 86 55 0 184 269 825 910 1.42e-11 65.1
Msa0795080 MtrunA17_Chr4g0068411 33.010 103 58 1 183 274 629 731 9.88e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0795080 AT4G14780.1 61.413 184 60 4 123 295 181 364 1.03e-69 220
Msa0795080 AT3G22750.1 83.186 113 19 0 183 295 266 378 4.60e-68 216
Msa0795080 AT3G01490.1 81.416 113 21 0 183 295 299 411 2.43e-67 216
Msa0795080 AT5G50000.1 76.991 113 26 0 183 295 273 385 2.95e-64 207
Msa0795080 AT3G63260.1 72.566 113 31 0 183 295 279 391 1.94e-58 192
Msa0795080 AT2G32030.1 51.515 165 73 3 21 184 24 182 8.97e-55 176
Msa0795080 AT2G32020.1 46.237 186 83 4 2 184 6 177 1.18e-49 163
Msa0795080 AT3G22560.1 40.854 164 92 2 21 182 7 167 1.33e-34 124
Msa0795080 AT3G01490.2 76.471 51 12 0 183 233 299 349 3.06e-22 95.5
Msa0795080 AT5G50000.2 84.444 45 7 0 183 227 273 317 3.14e-22 95.1
Msa0795080 AT3G63260.2 77.778 45 10 0 183 227 279 323 2.67e-19 87.0
Msa0795080 AT1G62400.1 38.947 95 58 0 183 277 257 351 4.40e-19 87.0
Msa0795080 AT5G58950.1 39.091 110 62 2 187 294 384 490 5.33e-19 87.4
Msa0795080 AT2G24360.1 41.573 89 52 0 183 271 301 389 2.89e-18 84.7
Msa0795080 AT3G46930.1 40.659 91 53 1 183 272 336 426 6.68e-18 84.0
Msa0795080 AT3G46930.2 40.659 91 53 1 183 272 371 461 8.60e-18 83.6
Msa0795080 AT4G31170.7 39.326 89 54 0 183 271 302 390 1.98e-17 82.4
Msa0795080 AT4G31170.6 39.326 89 54 0 183 271 302 390 1.98e-17 82.4
Msa0795080 AT4G31170.5 39.326 89 54 0 183 271 302 390 1.98e-17 82.4
Msa0795080 AT4G31170.1 39.326 89 54 0 183 271 302 390 1.98e-17 82.4
Msa0795080 AT4G31170.2 39.326 89 54 0 183 271 302 390 1.98e-17 82.4
Msa0795080 AT4G31170.3 39.326 89 54 0 183 271 302 390 1.98e-17 82.4
Msa0795080 AT4G31170.8 39.326 89 54 0 183 271 302 390 1.98e-17 82.4
Msa0795080 AT4G35780.1 33.019 106 71 0 183 288 458 563 2.29e-16 79.7
Msa0795080 AT2G17700.1 34.483 87 57 0 183 269 452 538 1.43e-15 77.0
Msa0795080 AT3G46920.1 37.975 79 49 0 193 271 996 1074 6.27e-14 72.8
Msa0795080 AT3G46920.2 37.975 79 49 0 193 271 1062 1140 6.84e-14 72.4
Msa0795080 AT4G38470.1 31.034 87 60 0 183 269 456 542 8.93e-14 72.0
Msa0795080 AT4G38470.2 31.034 87 60 0 183 269 456 542 1.03e-13 71.6
Msa0795080 AT1G18160.1 35.632 87 56 0 183 269 884 970 5.80e-13 69.7
Msa0795080 AT1G16270.1 36.250 80 51 0 193 272 1053 1132 6.04e-13 69.7
Msa0795080 AT1G16270.2 36.250 80 51 0 193 272 1053 1132 6.04e-13 69.7
Msa0795080 AT1G16270.3 36.250 80 51 0 193 272 1053 1132 6.04e-13 69.7
Msa0795080 AT1G79570.2 33.750 80 53 0 193 272 1154 1233 7.05e-13 69.3
Msa0795080 AT1G79570.1 33.750 80 53 0 193 272 1154 1233 7.05e-13 69.3
Msa0795080 AT5G11850.1 40.230 87 52 0 183 269 778 864 1.05e-12 68.9
Msa0795080 AT4G23050.1 32.323 99 67 0 183 281 636 734 1.24e-12 68.6
Msa0795080 AT4G23050.2 32.323 99 67 0 183 281 637 735 1.24e-12 68.6
Msa0795080 AT4G24480.2 40.698 86 51 0 184 269 841 926 2.06e-12 68.2
Msa0795080 AT4G24480.3 40.698 86 51 0 184 269 841 926 2.09e-12 68.2
Msa0795080 AT4G24480.1 40.698 86 51 0 184 269 846 931 2.21e-12 67.8
Msa0795080 AT3G24715.1 33.766 77 51 0 193 269 1026 1102 3.02e-12 67.4
Msa0795080 AT3G24715.3 33.766 77 51 0 193 269 1026 1102 3.02e-12 67.4
Msa0795080 AT3G24715.2 33.766 77 51 0 193 269 1026 1102 3.02e-12 67.4
Msa0795080 AT1G73660.1 32.990 97 65 0 183 279 917 1013 3.08e-12 67.4
Msa0795080 AT5G57610.1 35.526 76 49 0 194 269 972 1047 4.22e-12 67.0
Msa0795080 AT1G08720.1 32.727 110 70 1 165 270 816 925 6.49e-12 66.6
Msa0795080 AT2G35050.1 32.500 80 54 0 193 272 1163 1242 1.24e-11 65.9
Msa0795080 AT2G35050.2 32.500 80 54 0 193 272 1163 1242 1.24e-11 65.9
Msa0795080 AT5G58520.1 34.524 84 51 1 183 262 511 594 3.04e-11 64.3
Msa0795080 AT5G03730.2 34.862 109 67 1 165 269 700 808 4.47e-11 63.9
Msa0795080 AT5G03730.1 34.862 109 67 1 165 269 700 808 4.47e-11 63.9
Msa0795080 AT1G04700.1 33.766 77 51 0 193 269 956 1032 5.01e-11 63.9
Msa0795080 AT1G04700.2 33.766 77 51 0 193 269 956 1032 5.01e-11 63.9

Find 90 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGACAACACCTTGGAATTTC+TGG 0.164779 5_3:-6971002 None:intergenic
GGTGCATTTATGCATGAAAA+AGG 0.205427 5_3:+6971461 Msa0795080:three_prime_UTR
TAACAGAAAGGAAGATTAAT+TGG 0.226860 5_3:+6971335 Msa0795080:three_prime_UTR
TCCTAAGAATTCCTTCCTTC+TGG 0.242611 5_3:-6970405 None:intergenic
ACAGAACTTGCCTATGTTCT+AGG 0.250597 5_3:+6970232 Msa0795080:CDS
GTTGATGCCTTGTTCTTTGC+TGG 0.260002 5_3:-6970089 None:intergenic
CAACCTGAACTTTGATCTTC+AGG 0.272746 5_3:-6971146 None:intergenic
ATCACCACATCCTTCATTTC+CGG 0.278826 5_3:-6971080 None:intergenic
ATGTTCTAGGATCTAAATAT+TGG 0.302360 5_3:+6970245 Msa0795080:CDS
TGTATGTAGTACTGAATATC+TGG 0.310649 5_3:+6971439 Msa0795080:three_prime_UTR
AACACAATGATCAAGGATTC+TGG 0.313379 5_3:-6971204 None:intergenic
CCTTGTTCTTTGCTGGTGTA+TGG 0.318147 5_3:-6970082 None:intergenic
TGTTCTAGGATCTAAATATT+GGG 0.318462 5_3:+6970246 Msa0795080:CDS
TCAAGGATTCTGGAAAATTA+AGG 0.336562 5_3:-6971194 None:intergenic
TGCCTTAATGATCGTGCTAT+TGG 0.357294 5_3:+6970157 Msa0795080:CDS
ATATACCAAACAAATTTCTA+TGG 0.388477 5_3:+6970122 Msa0795080:CDS
TCTCCCCAATCACTGGTTCT+TGG 0.390355 5_3:+6971504 Msa0795080:three_prime_UTR
ATTCCTGAAGATCAAAGTTC+AGG 0.390746 5_3:+6971143 Msa0795080:CDS
TCCAGAAGGAAGGAATTCTT+AGG 0.397920 5_3:+6970404 Msa0795080:CDS
GTCTTCCGCTGTCGTTCGTC+AGG 0.402964 5_3:+6970855 Msa0795080:CDS
GAAAATTAAGGACCTCTTTG+AGG 0.403220 5_3:-6971182 None:intergenic
CAGCTTTGGCATTTGCTTGT+GGG 0.403396 5_3:+6970783 Msa0795080:CDS
GGCCAATAGCACGATCATTA+AGG 0.403869 5_3:-6970159 None:intergenic
ACATCACATGTCCTGTTGTA+AGG 0.404211 5_3:-6970757 None:intergenic
TTGCACCATAGAAATTTGTT+TGG 0.404833 5_3:-6970127 None:intergenic
CGAACATCATGCGGAAATGC+TGG 0.407802 5_3:+6971036 Msa0795080:CDS
TTGTTGATGTTGAAAATGTT+GGG 0.408191 5_3:+6970353 Msa0795080:CDS
GAAAAGGTCGGAGTGCGATT+TGG 0.410859 5_3:-6969988 None:intergenic
AGCCTTTGTTAAGAAAGAAA+AGG 0.429130 5_3:-6971386 None:intergenic
TTCTGACCTTGATGAGCTCC+TGG 0.433077 5_3:+6970015 Msa0795080:CDS
CTTTCCTGCGGAGGAGAGAA+TGG 0.433774 5_3:+6971308 Msa0795080:three_prime_UTR
CTCTCCTCCGCAGGAAAGAA+TGG 0.438189 5_3:-6971303 None:intergenic
TTTGTTGATGTTGAAAATGT+TGG 0.442167 5_3:+6970352 Msa0795080:CDS
ATAGCCAAGAACCAGTGATT+GGG 0.444741 5_3:-6971508 None:intergenic
TATAGCCAAGAACCAGTGAT+TGG 0.448649 5_3:-6971509 None:intergenic
TTCATTTCCGGACGTTTGAT+CGG 0.449784 5_3:-6971068 None:intergenic
GCCTTTGTTAAGAAAGAAAA+GGG 0.456522 5_3:-6971385 None:intergenic
ACATGTGATGTATACAGCTT+TGG 0.460987 5_3:+6970769 Msa0795080:CDS
ACATCAGCAAAGCTTAGATC+TGG 0.462493 5_3:-6970832 None:intergenic
AGTGGCCAAGTTCTGCTCTT+GGG 0.462852 5_3:+6970057 Msa0795080:CDS
TGGATGGTAAACCTTACAAC+AGG 0.463320 5_3:+6970746 Msa0795080:CDS
AAGTGGCCAAGTTCTGCTCT+TGG 0.474319 5_3:+6970056 Msa0795080:CDS
GGATCTAAATATTGGGGTAA+AGG 0.475846 5_3:+6970253 Msa0795080:CDS
AGGAAGTATTTGTTCATGAA+AGG 0.475944 5_3:+6970424 Msa0795080:CDS
GATCAAACGTCCGGAAATGA+AGG 0.484017 5_3:+6971070 Msa0795080:CDS
TTTCATCAGCTCTCCATACC+AGG 0.488476 5_3:-6970033 None:intergenic
CAAAGAGTGTTGGAGAAAGC+TGG 0.497277 5_3:+6970379 Msa0795080:CDS
GAGAATGGTTGTTAACAGAA+AGG 0.507856 5_3:+6971323 Msa0795080:three_prime_UTR
TCAAGGTCAGAAAGATGAAA+AGG 0.513299 5_3:-6970004 None:intergenic
TGCGAATCCGATCAAACGTC+CGG 0.515906 5_3:+6971061 Msa0795080:CDS
ACAGCTTTGGCATTTGCTTG+TGG 0.516448 5_3:+6970782 Msa0795080:CDS
GCAAAGCTTAGATCTGGATA+AGG 0.517678 5_3:-6970826 None:intergenic
AAGTACAGAAGACTGGAAAT+CGG 0.518400 5_3:+6971241 Msa0795080:three_prime_UTR
ATATTTAGATCCTAGAACAT+AGG 0.519203 5_3:-6970242 None:intergenic
TCTCTTGAACACAATGATCA+AGG 0.523986 5_3:-6971211 None:intergenic
AAGCACTGGATACAAGCAAA+GGG 0.525088 5_3:+6971111 Msa0795080:CDS
TGAGGTGAAGTACAGAAGAC+TGG 0.527560 5_3:+6971234 Msa0795080:three_prime_UTR
ACCTTGATGAGCTCCTGGTA+TGG 0.539184 5_3:+6970020 Msa0795080:CDS
GGTGATAATGCTAGAAGCAC+TGG 0.555302 5_3:+6971097 Msa0795080:CDS
GATCACCTCATGATAAAAGC+AGG 0.555612 5_3:+6970200 Msa0795080:CDS
TCCATACCAGGAGCTCATCA+AGG 0.558283 5_3:-6970021 None:intergenic
AATGCACTCGGACAACACCT+TGG 0.561533 5_3:-6971011 None:intergenic
ATGATGTTCGCCAATGCACT+CGG 0.564817 5_3:-6971023 None:intergenic
TGTTGGGTCTCAAAGAGTGT+TGG 0.566749 5_3:+6970369 Msa0795080:CDS
ACAACCATTCTCTCCTCCGC+AGG 0.570050 5_3:-6971312 None:intergenic
AAGGTGTTGTCCGAGTGCAT+TGG 0.570264 5_3:+6971013 Msa0795080:CDS
ACGTCCGGAAATGAAGGATG+TGG 0.574365 5_3:+6971076 Msa0795080:CDS
TGGTTCCCAAGAGCAGAACT+TGG 0.574822 5_3:-6970062 None:intergenic
ACCGTTACCATTCTTTCCTG+CGG 0.588760 5_3:+6971296 Msa0795080:three_prime_UTR
ATTTACGACCAGAAATTCCA+AGG 0.591935 5_3:+6970994 Msa0795080:CDS
GTTCTAGGATCTAAATATTG+GGG 0.601221 5_3:+6970247 Msa0795080:CDS
CCATACACCAGCAAAGAACA+AGG 0.601334 5_3:+6970082 Msa0795080:CDS
TCCGCAGGAAAGAATGGTAA+CGG 0.608374 5_3:-6971297 None:intergenic
GTATGTAGTACTGAATATCT+GGG 0.612295 5_3:+6971440 Msa0795080:three_prime_UTR
TAGCCAAGAACCAGTGATTG+GGG 0.616479 5_3:-6971507 None:intergenic
GGAGAAAGCTGGTTTCCAGA+AGG 0.617484 5_3:+6970390 Msa0795080:CDS
GTTACCATTCTTTCCTGCGG+AGG 0.621742 5_3:+6971299 Msa0795080:three_prime_UTR
AACTTGTTTCACAACATACG+TGG 0.623050 5_3:-6970281 None:intergenic
AAAGCTGGTTTCCAGAAGGA+AGG 0.623258 5_3:+6970394 Msa0795080:CDS
ATCATTGTGTTCAAGAGATG+AGG 0.626832 5_3:+6971216 Msa0795080:three_prime_UTR
GAACATCATGCGGAAATGCT+GGG 0.627023 5_3:+6971037 Msa0795080:CDS
GAAGCACTGGATACAAGCAA+AGG 0.628719 5_3:+6971110 Msa0795080:CDS
GGTCAGAAAGATGAAAAGGT+CGG 0.638104 5_3:-6970000 None:intergenic
TGTTGTGAAACAAGTTGTCA+AGG 0.644645 5_3:+6970288 Msa0795080:CDS
TCATACCTGACGAACGACAG+CGG 0.651460 5_3:-6970860 None:intergenic
GTGCATTGGCGAACATCATG+CGG 0.658866 5_3:+6971027 Msa0795080:CDS
TTTATTTCTTCCAAACCAGG+TGG 0.661410 5_3:+6969941 Msa0795080:CDS
GCACTGGATACAAGCAAAGG+GGG 0.687987 5_3:+6971113 Msa0795080:CDS
ATCTTGATTTCAGAGAAACA+CGG 0.706701 5_3:-6970180 None:intergenic
AGCACTGGATACAAGCAAAG+GGG 0.722345 5_3:+6971112 Msa0795080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATAGACAAATATGTTA+CGG - chr5_3:6970925-6970944 None:intergenic 15.0%
!! TAAAATAGACAAATATGTTA+CGG - chr5_3:6970925-6970944 None:intergenic 15.0%
!! ATATACCAAACAAATTTCTA+TGG + chr5_3:6970122-6970141 Msa0795080:CDS 20.0%
!!! GGTTTTATTATTGACATTAT+TGG + chr5_3:6971356-6971375 Msa0795080:three_prime_UTR 20.0%
!! ATATACCAAACAAATTTCTA+TGG + chr5_3:6970122-6970141 Msa0795080:CDS 20.0%
!!! GGTTTTATTATTGACATTAT+TGG + chr5_3:6971356-6971375 Msa0795080:three_prime_UTR 20.0%
! ATATTTAGATCCTAGAACAT+AGG - chr5_3:6970245-6970264 None:intergenic 25.0%
!!! ATGTTCTAGGATCTAAATAT+TGG + chr5_3:6970245-6970264 Msa0795080:CDS 25.0%
!!! TGTTCTAGGATCTAAATATT+GGG + chr5_3:6970246-6970265 Msa0795080:CDS 25.0%
! TTTGTTGATGTTGAAAATGT+TGG + chr5_3:6970352-6970371 Msa0795080:CDS 25.0%
! TTGTTGATGTTGAAAATGTT+GGG + chr5_3:6970353-6970372 Msa0795080:CDS 25.0%
! CCAAACAAATAAATCATAGT+TGG - chr5_3:6970495-6970514 None:intergenic 25.0%
! CCAACTATGATTTATTTGTT+TGG + chr5_3:6970492-6970511 Msa0795080:intron 25.0%
! ATTTGTTTGGAAATCCTTTA+TGG + chr5_3:6970505-6970524 Msa0795080:intron 25.0%
!! AAGAATCTGAAATACCATAA+AGG - chr5_3:6970522-6970541 None:intergenic 25.0%
! TAACAGAAAGGAAGATTAAT+TGG + chr5_3:6971335-6971354 Msa0795080:three_prime_UTR 25.0%
! ATATTTAGATCCTAGAACAT+AGG - chr5_3:6970245-6970264 None:intergenic 25.0%
!!! ATGTTCTAGGATCTAAATAT+TGG + chr5_3:6970245-6970264 Msa0795080:CDS 25.0%
!!! TGTTCTAGGATCTAAATATT+GGG + chr5_3:6970246-6970265 Msa0795080:CDS 25.0%
! TTTGTTGATGTTGAAAATGT+TGG + chr5_3:6970352-6970371 Msa0795080:CDS 25.0%
! TTGTTGATGTTGAAAATGTT+GGG + chr5_3:6970353-6970372 Msa0795080:CDS 25.0%
! CCAAACAAATAAATCATAGT+TGG - chr5_3:6970495-6970514 None:intergenic 25.0%
! CCAACTATGATTTATTTGTT+TGG + chr5_3:6970492-6970511 Msa0795080:intron 25.0%
! ATTTGTTTGGAAATCCTTTA+TGG + chr5_3:6970505-6970524 Msa0795080:intron 25.0%
!! AAGAATCTGAAATACCATAA+AGG - chr5_3:6970522-6970541 None:intergenic 25.0%
! TAACAGAAAGGAAGATTAAT+TGG + chr5_3:6971335-6971354 Msa0795080:three_prime_UTR 25.0%
!! ACTTTTATTTCTTCCAAACC+AGG + chr5_3:6969938-6969957 Msa0795080:CDS 30.0%
! TTGCACCATAGAAATTTGTT+TGG - chr5_3:6970130-6970149 None:intergenic 30.0%
ATCTTGATTTCAGAGAAACA+CGG - chr5_3:6970183-6970202 None:intergenic 30.0%
!! GTTCTAGGATCTAAATATTG+GGG + chr5_3:6970247-6970266 Msa0795080:CDS 30.0%
!! AGGAAGTATTTGTTCATGAA+AGG + chr5_3:6970424-6970443 Msa0795080:CDS 30.0%
TATCTTACGAATTAATCGCA+TGG + chr5_3:6970668-6970687 Msa0795080:intron 30.0%
! ATTACACAATGTGTAGGTTT+TGG + chr5_3:6970726-6970745 Msa0795080:intron 30.0%
TTAATGTTACACGTGACATA+TGG + chr5_3:6970942-6970961 Msa0795080:intron 30.0%
! TCAAGGATTCTGGAAAATTA+AGG - chr5_3:6971197-6971216 None:intergenic 30.0%
AACGGTTAAACTGTAAAAAC+TGG - chr5_3:6971282-6971301 None:intergenic 30.0%
! TCCCTTTTCTTTCTTAACAA+AGG + chr5_3:6971384-6971403 Msa0795080:three_prime_UTR 30.0%
GCCTTTGTTAAGAAAGAAAA+GGG - chr5_3:6971388-6971407 None:intergenic 30.0%
AGCCTTTGTTAAGAAAGAAA+AGG - chr5_3:6971389-6971408 None:intergenic 30.0%
! TGTATGTAGTACTGAATATC+TGG + chr5_3:6971439-6971458 Msa0795080:three_prime_UTR 30.0%
! GTATGTAGTACTGAATATCT+GGG + chr5_3:6971440-6971459 Msa0795080:three_prime_UTR 30.0%
GTGCATTTATGCATGAAAAA+GGG + chr5_3:6971462-6971481 Msa0795080:three_prime_UTR 30.0%
!! ACTTTTATTTCTTCCAAACC+AGG + chr5_3:6969938-6969957 Msa0795080:CDS 30.0%
! TTGCACCATAGAAATTTGTT+TGG - chr5_3:6970130-6970149 None:intergenic 30.0%
ATCTTGATTTCAGAGAAACA+CGG - chr5_3:6970183-6970202 None:intergenic 30.0%
!! GTTCTAGGATCTAAATATTG+GGG + chr5_3:6970247-6970266 Msa0795080:CDS 30.0%
!! AGGAAGTATTTGTTCATGAA+AGG + chr5_3:6970424-6970443 Msa0795080:CDS 30.0%
TATCTTACGAATTAATCGCA+TGG + chr5_3:6970668-6970687 Msa0795080:intron 30.0%
! ATTACACAATGTGTAGGTTT+TGG + chr5_3:6970726-6970745 Msa0795080:intron 30.0%
TTAATGTTACACGTGACATA+TGG + chr5_3:6970942-6970961 Msa0795080:intron 30.0%
! TCAAGGATTCTGGAAAATTA+AGG - chr5_3:6971197-6971216 None:intergenic 30.0%
AACGGTTAAACTGTAAAAAC+TGG - chr5_3:6971282-6971301 None:intergenic 30.0%
! TCCCTTTTCTTTCTTAACAA+AGG + chr5_3:6971384-6971403 Msa0795080:three_prime_UTR 30.0%
GCCTTTGTTAAGAAAGAAAA+GGG - chr5_3:6971388-6971407 None:intergenic 30.0%
AGCCTTTGTTAAGAAAGAAA+AGG - chr5_3:6971389-6971408 None:intergenic 30.0%
! TGTATGTAGTACTGAATATC+TGG + chr5_3:6971439-6971458 Msa0795080:three_prime_UTR 30.0%
! GTATGTAGTACTGAATATCT+GGG + chr5_3:6971440-6971459 Msa0795080:three_prime_UTR 30.0%
GTGCATTTATGCATGAAAAA+GGG + chr5_3:6971462-6971481 Msa0795080:three_prime_UTR 30.0%
! TTTATTTCTTCCAAACCAGG+TGG + chr5_3:6969941-6969960 Msa0795080:CDS 35.0%
TCAAGGTCAGAAAGATGAAA+AGG - chr5_3:6970007-6970026 None:intergenic 35.0%
!! TTGTTCCTGCTTTTATCATG+AGG - chr5_3:6970208-6970227 None:intergenic 35.0%
GGATCTAAATATTGGGGTAA+AGG + chr5_3:6970253-6970272 Msa0795080:CDS 35.0%
! AACTTGTTTCACAACATACG+TGG - chr5_3:6970284-6970303 None:intergenic 35.0%
TGTTGTGAAACAAGTTGTCA+AGG + chr5_3:6970288-6970307 Msa0795080:CDS 35.0%
ACATGTGATGTATACAGCTT+TGG + chr5_3:6970769-6970788 Msa0795080:CDS 35.0%
! GTCAGGTATGATTACGTTTT+CGG + chr5_3:6970872-6970891 Msa0795080:intron 35.0%
ATTTACGACCAGAAATTCCA+AGG + chr5_3:6970994-6971013 Msa0795080:CDS 35.0%
ATTCCTGAAGATCAAAGTTC+AGG + chr5_3:6971143-6971162 Msa0795080:CDS 35.0%
!!! TTTTGTTTTGCACCTCAAAG+AGG + chr5_3:6971170-6971189 Msa0795080:CDS 35.0%
GAAAATTAAGGACCTCTTTG+AGG - chr5_3:6971185-6971204 None:intergenic 35.0%
AACACAATGATCAAGGATTC+TGG - chr5_3:6971207-6971226 None:intergenic 35.0%
TCTCTTGAACACAATGATCA+AGG - chr5_3:6971214-6971233 None:intergenic 35.0%
ATCATTGTGTTCAAGAGATG+AGG + chr5_3:6971216-6971235 Msa0795080:three_prime_UTR 35.0%
AAGTACAGAAGACTGGAAAT+CGG + chr5_3:6971241-6971260 Msa0795080:three_prime_UTR 35.0%
! GACTGGAAATCGGTATTTTA+TGG + chr5_3:6971251-6971270 Msa0795080:three_prime_UTR 35.0%
GAGAATGGTTGTTAACAGAA+AGG + chr5_3:6971323-6971342 Msa0795080:three_prime_UTR 35.0%
GGTGCATTTATGCATGAAAA+AGG + chr5_3:6971461-6971480 Msa0795080:three_prime_UTR 35.0%
! TTTATTTCTTCCAAACCAGG+TGG + chr5_3:6969941-6969960 Msa0795080:CDS 35.0%
TCAAGGTCAGAAAGATGAAA+AGG - chr5_3:6970007-6970026 None:intergenic 35.0%
!! TTGTTCCTGCTTTTATCATG+AGG - chr5_3:6970208-6970227 None:intergenic 35.0%
GGATCTAAATATTGGGGTAA+AGG + chr5_3:6970253-6970272 Msa0795080:CDS 35.0%
! AACTTGTTTCACAACATACG+TGG - chr5_3:6970284-6970303 None:intergenic 35.0%
TGTTGTGAAACAAGTTGTCA+AGG + chr5_3:6970288-6970307 Msa0795080:CDS 35.0%
ACATGTGATGTATACAGCTT+TGG + chr5_3:6970769-6970788 Msa0795080:CDS 35.0%
! GTCAGGTATGATTACGTTTT+CGG + chr5_3:6970872-6970891 Msa0795080:intron 35.0%
ATTTACGACCAGAAATTCCA+AGG + chr5_3:6970994-6971013 Msa0795080:CDS 35.0%
ATTCCTGAAGATCAAAGTTC+AGG + chr5_3:6971143-6971162 Msa0795080:CDS 35.0%
!!! TTTTGTTTTGCACCTCAAAG+AGG + chr5_3:6971170-6971189 Msa0795080:CDS 35.0%
GAAAATTAAGGACCTCTTTG+AGG - chr5_3:6971185-6971204 None:intergenic 35.0%
AACACAATGATCAAGGATTC+TGG - chr5_3:6971207-6971226 None:intergenic 35.0%
TCTCTTGAACACAATGATCA+AGG - chr5_3:6971214-6971233 None:intergenic 35.0%
ATCATTGTGTTCAAGAGATG+AGG + chr5_3:6971216-6971235 Msa0795080:three_prime_UTR 35.0%
AAGTACAGAAGACTGGAAAT+CGG + chr5_3:6971241-6971260 Msa0795080:three_prime_UTR 35.0%
! GACTGGAAATCGGTATTTTA+TGG + chr5_3:6971251-6971270 Msa0795080:three_prime_UTR 35.0%
GAGAATGGTTGTTAACAGAA+AGG + chr5_3:6971323-6971342 Msa0795080:three_prime_UTR 35.0%
GGTGCATTTATGCATGAAAA+AGG + chr5_3:6971461-6971480 Msa0795080:three_prime_UTR 35.0%
GGTCAGAAAGATGAAAAGGT+CGG - chr5_3:6970003-6970022 None:intergenic 40.0%
ATGGAGAGCTGATGAAAAAG+TGG + chr5_3:6970039-6970058 Msa0795080:CDS 40.0%
TGCCTTAATGATCGTGCTAT+TGG + chr5_3:6970157-6970176 Msa0795080:CDS 40.0%
GATCACCTCATGATAAAAGC+AGG + chr5_3:6970200-6970219 Msa0795080:CDS 40.0%
ACAGAACTTGCCTATGTTCT+AGG + chr5_3:6970232-6970251 Msa0795080:CDS 40.0%
TCCAGAAGGAAGGAATTCTT+AGG + chr5_3:6970404-6970423 Msa0795080:CDS 40.0%
TCCTAAGAATTCCTTCCTTC+TGG - chr5_3:6970408-6970427 None:intergenic 40.0%
!! AATCGCATGGTTTGTTAGAC+AGG + chr5_3:6970681-6970700 Msa0795080:intron 40.0%
CCTACACATTGTGTAATGCA+TGG - chr5_3:6970723-6970742 None:intergenic 40.0%
CCATGCATTACACAATGTGT+AGG + chr5_3:6970720-6970739 Msa0795080:intron 40.0%
!!! CACAATGTGTAGGTTTTGGA+TGG + chr5_3:6970730-6970749 Msa0795080:intron 40.0%
TGGATGGTAAACCTTACAAC+AGG + chr5_3:6970746-6970765 Msa0795080:CDS 40.0%
ACATCACATGTCCTGTTGTA+AGG - chr5_3:6970760-6970779 None:intergenic 40.0%
GCAAAGCTTAGATCTGGATA+AGG - chr5_3:6970829-6970848 None:intergenic 40.0%
ACATCAGCAAAGCTTAGATC+TGG - chr5_3:6970835-6970854 None:intergenic 40.0%
!!! TACGTTTTCGGTGTCATTTG+TGG + chr5_3:6970884-6970903 Msa0795080:intron 40.0%
TTCATTTCCGGACGTTTGAT+CGG - chr5_3:6971071-6971090 None:intergenic 40.0%
ATCACCACATCCTTCATTTC+CGG - chr5_3:6971083-6971102 None:intergenic 40.0%
!! AAGCACTGGATACAAGCAAA+GGG + chr5_3:6971111-6971130 Msa0795080:CDS 40.0%
CAACCTGAACTTTGATCTTC+AGG - chr5_3:6971149-6971168 None:intergenic 40.0%
ACAAAAATCTCCCCAATCAC+TGG + chr5_3:6971497-6971516 Msa0795080:three_prime_UTR 40.0%
ATAGCCAAGAACCAGTGATT+GGG - chr5_3:6971511-6971530 None:intergenic 40.0%
TATAGCCAAGAACCAGTGAT+TGG - chr5_3:6971512-6971531 None:intergenic 40.0%
GGTCAGAAAGATGAAAAGGT+CGG - chr5_3:6970003-6970022 None:intergenic 40.0%
ATGGAGAGCTGATGAAAAAG+TGG + chr5_3:6970039-6970058 Msa0795080:CDS 40.0%
TGCCTTAATGATCGTGCTAT+TGG + chr5_3:6970157-6970176 Msa0795080:CDS 40.0%
GATCACCTCATGATAAAAGC+AGG + chr5_3:6970200-6970219 Msa0795080:CDS 40.0%
ACAGAACTTGCCTATGTTCT+AGG + chr5_3:6970232-6970251 Msa0795080:CDS 40.0%
TCCAGAAGGAAGGAATTCTT+AGG + chr5_3:6970404-6970423 Msa0795080:CDS 40.0%
TCCTAAGAATTCCTTCCTTC+TGG - chr5_3:6970408-6970427 None:intergenic 40.0%
!! AATCGCATGGTTTGTTAGAC+AGG + chr5_3:6970681-6970700 Msa0795080:intron 40.0%
CCTACACATTGTGTAATGCA+TGG - chr5_3:6970723-6970742 None:intergenic 40.0%
CCATGCATTACACAATGTGT+AGG + chr5_3:6970720-6970739 Msa0795080:intron 40.0%
!!! CACAATGTGTAGGTTTTGGA+TGG + chr5_3:6970730-6970749 Msa0795080:intron 40.0%
TGGATGGTAAACCTTACAAC+AGG + chr5_3:6970746-6970765 Msa0795080:CDS 40.0%
ACATCACATGTCCTGTTGTA+AGG - chr5_3:6970760-6970779 None:intergenic 40.0%
GCAAAGCTTAGATCTGGATA+AGG - chr5_3:6970829-6970848 None:intergenic 40.0%
ACATCAGCAAAGCTTAGATC+TGG - chr5_3:6970835-6970854 None:intergenic 40.0%
!!! TACGTTTTCGGTGTCATTTG+TGG + chr5_3:6970884-6970903 Msa0795080:intron 40.0%
TTCATTTCCGGACGTTTGAT+CGG - chr5_3:6971071-6971090 None:intergenic 40.0%
ATCACCACATCCTTCATTTC+CGG - chr5_3:6971083-6971102 None:intergenic 40.0%
!! AAGCACTGGATACAAGCAAA+GGG + chr5_3:6971111-6971130 Msa0795080:CDS 40.0%
CAACCTGAACTTTGATCTTC+AGG - chr5_3:6971149-6971168 None:intergenic 40.0%
ACAAAAATCTCCCCAATCAC+TGG + chr5_3:6971497-6971516 Msa0795080:three_prime_UTR 40.0%
ATAGCCAAGAACCAGTGATT+GGG - chr5_3:6971511-6971530 None:intergenic 40.0%
TATAGCCAAGAACCAGTGAT+TGG - chr5_3:6971512-6971531 None:intergenic 40.0%
! CTTTTCATTGCCACCTGGTT+TGG - chr5_3:6969954-6969973 None:intergenic 45.0%
! ATGCTCTTTTCATTGCCACC+TGG - chr5_3:6969959-6969978 None:intergenic 45.0%
TTTCATCAGCTCTCCATACC+AGG - chr5_3:6970036-6970055 None:intergenic 45.0%
CCTTGTTCTTTGCTGGTGTA+TGG - chr5_3:6970085-6970104 None:intergenic 45.0%
CCATACACCAGCAAAGAACA+AGG + chr5_3:6970082-6970101 Msa0795080:CDS 45.0%
! GTTGATGCCTTGTTCTTTGC+TGG - chr5_3:6970092-6970111 None:intergenic 45.0%
GGCCAATAGCACGATCATTA+AGG - chr5_3:6970162-6970181 None:intergenic 45.0%
! TGTTGGGTCTCAAAGAGTGT+TGG + chr5_3:6970369-6970388 Msa0795080:CDS 45.0%
!! CAAAGAGTGTTGGAGAAAGC+TGG + chr5_3:6970379-6970398 Msa0795080:CDS 45.0%
! AAAGCTGGTTTCCAGAAGGA+AGG + chr5_3:6970394-6970413 Msa0795080:CDS 45.0%
! ACAGCTTTGGCATTTGCTTG+TGG + chr5_3:6970782-6970801 Msa0795080:CDS 45.0%
! CAGCTTTGGCATTTGCTTGT+GGG + chr5_3:6970783-6970802 Msa0795080:CDS 45.0%
GGACAACACCTTGGAATTTC+TGG - chr5_3:6971005-6971024 None:intergenic 45.0%
ATGATGTTCGCCAATGCACT+CGG - chr5_3:6971026-6971045 None:intergenic 45.0%
GAACATCATGCGGAAATGCT+GGG + chr5_3:6971037-6971056 Msa0795080:CDS 45.0%
GATCAAACGTCCGGAAATGA+AGG + chr5_3:6971070-6971089 Msa0795080:CDS 45.0%
! GGTGATAATGCTAGAAGCAC+TGG + chr5_3:6971097-6971116 Msa0795080:CDS 45.0%
!! GAAGCACTGGATACAAGCAA+AGG + chr5_3:6971110-6971129 Msa0795080:CDS 45.0%
! AGCACTGGATACAAGCAAAG+GGG + chr5_3:6971112-6971131 Msa0795080:CDS 45.0%
TGAGGTGAAGTACAGAAGAC+TGG + chr5_3:6971234-6971253 Msa0795080:three_prime_UTR 45.0%
ACCGTTACCATTCTTTCCTG+CGG + chr5_3:6971296-6971315 Msa0795080:three_prime_UTR 45.0%
TCCGCAGGAAAGAATGGTAA+CGG - chr5_3:6971300-6971319 None:intergenic 45.0%
TAGCCAAGAACCAGTGATTG+GGG - chr5_3:6971510-6971529 None:intergenic 45.0%
! CTTTTCATTGCCACCTGGTT+TGG - chr5_3:6969954-6969973 None:intergenic 45.0%
! ATGCTCTTTTCATTGCCACC+TGG - chr5_3:6969959-6969978 None:intergenic 45.0%
TTTCATCAGCTCTCCATACC+AGG - chr5_3:6970036-6970055 None:intergenic 45.0%
CCTTGTTCTTTGCTGGTGTA+TGG - chr5_3:6970085-6970104 None:intergenic 45.0%
CCATACACCAGCAAAGAACA+AGG + chr5_3:6970082-6970101 Msa0795080:CDS 45.0%
! GTTGATGCCTTGTTCTTTGC+TGG - chr5_3:6970092-6970111 None:intergenic 45.0%
GGCCAATAGCACGATCATTA+AGG - chr5_3:6970162-6970181 None:intergenic 45.0%
! TGTTGGGTCTCAAAGAGTGT+TGG + chr5_3:6970369-6970388 Msa0795080:CDS 45.0%
!! CAAAGAGTGTTGGAGAAAGC+TGG + chr5_3:6970379-6970398 Msa0795080:CDS 45.0%
! AAAGCTGGTTTCCAGAAGGA+AGG + chr5_3:6970394-6970413 Msa0795080:CDS 45.0%
! ACAGCTTTGGCATTTGCTTG+TGG + chr5_3:6970782-6970801 Msa0795080:CDS 45.0%
! CAGCTTTGGCATTTGCTTGT+GGG + chr5_3:6970783-6970802 Msa0795080:CDS 45.0%
GGACAACACCTTGGAATTTC+TGG - chr5_3:6971005-6971024 None:intergenic 45.0%
ATGATGTTCGCCAATGCACT+CGG - chr5_3:6971026-6971045 None:intergenic 45.0%
GAACATCATGCGGAAATGCT+GGG + chr5_3:6971037-6971056 Msa0795080:CDS 45.0%
GATCAAACGTCCGGAAATGA+AGG + chr5_3:6971070-6971089 Msa0795080:CDS 45.0%
! GGTGATAATGCTAGAAGCAC+TGG + chr5_3:6971097-6971116 Msa0795080:CDS 45.0%
!! GAAGCACTGGATACAAGCAA+AGG + chr5_3:6971110-6971129 Msa0795080:CDS 45.0%
! AGCACTGGATACAAGCAAAG+GGG + chr5_3:6971112-6971131 Msa0795080:CDS 45.0%
TGAGGTGAAGTACAGAAGAC+TGG + chr5_3:6971234-6971253 Msa0795080:three_prime_UTR 45.0%
ACCGTTACCATTCTTTCCTG+CGG + chr5_3:6971296-6971315 Msa0795080:three_prime_UTR 45.0%
TCCGCAGGAAAGAATGGTAA+CGG - chr5_3:6971300-6971319 None:intergenic 45.0%
TAGCCAAGAACCAGTGATTG+GGG - chr5_3:6971510-6971529 None:intergenic 45.0%
GAAAAGGTCGGAGTGCGATT+TGG - chr5_3:6969991-6970010 None:intergenic 50.0%
TTCTGACCTTGATGAGCTCC+TGG + chr5_3:6970015-6970034 Msa0795080:CDS 50.0%
ACCTTGATGAGCTCCTGGTA+TGG + chr5_3:6970020-6970039 Msa0795080:CDS 50.0%
TCCATACCAGGAGCTCATCA+AGG - chr5_3:6970024-6970043 None:intergenic 50.0%
AAGTGGCCAAGTTCTGCTCT+TGG + chr5_3:6970056-6970075 Msa0795080:CDS 50.0%
AGTGGCCAAGTTCTGCTCTT+GGG + chr5_3:6970057-6970076 Msa0795080:CDS 50.0%
TGGTTCCCAAGAGCAGAACT+TGG - chr5_3:6970065-6970084 None:intergenic 50.0%
! GGAGAAAGCTGGTTTCCAGA+AGG + chr5_3:6970390-6970409 Msa0795080:CDS 50.0%
TCATACCTGACGAACGACAG+CGG - chr5_3:6970863-6970882 None:intergenic 50.0%
AATGCACTCGGACAACACCT+TGG - chr5_3:6971014-6971033 None:intergenic 50.0%
!! AAGGTGTTGTCCGAGTGCAT+TGG + chr5_3:6971013-6971032 Msa0795080:CDS 50.0%
! GTGCATTGGCGAACATCATG+CGG + chr5_3:6971027-6971046 Msa0795080:CDS 50.0%
CGAACATCATGCGGAAATGC+TGG + chr5_3:6971036-6971055 Msa0795080:CDS 50.0%
TGCGAATCCGATCAAACGTC+CGG + chr5_3:6971061-6971080 Msa0795080:CDS 50.0%
ACGTCCGGAAATGAAGGATG+TGG + chr5_3:6971076-6971095 Msa0795080:CDS 50.0%
GCACTGGATACAAGCAAAGG+GGG + chr5_3:6971113-6971132 Msa0795080:CDS 50.0%
GTTACCATTCTTTCCTGCGG+AGG + chr5_3:6971299-6971318 Msa0795080:three_prime_UTR 50.0%
!! TCTCCCCAATCACTGGTTCT+TGG + chr5_3:6971504-6971523 Msa0795080:three_prime_UTR 50.0%
GAAAAGGTCGGAGTGCGATT+TGG - chr5_3:6969991-6970010 None:intergenic 50.0%
TTCTGACCTTGATGAGCTCC+TGG + chr5_3:6970015-6970034 Msa0795080:CDS 50.0%
ACCTTGATGAGCTCCTGGTA+TGG + chr5_3:6970020-6970039 Msa0795080:CDS 50.0%
TCCATACCAGGAGCTCATCA+AGG - chr5_3:6970024-6970043 None:intergenic 50.0%
AAGTGGCCAAGTTCTGCTCT+TGG + chr5_3:6970056-6970075 Msa0795080:CDS 50.0%
AGTGGCCAAGTTCTGCTCTT+GGG + chr5_3:6970057-6970076 Msa0795080:CDS 50.0%
TGGTTCCCAAGAGCAGAACT+TGG - chr5_3:6970065-6970084 None:intergenic 50.0%
! GGAGAAAGCTGGTTTCCAGA+AGG + chr5_3:6970390-6970409 Msa0795080:CDS 50.0%
TCATACCTGACGAACGACAG+CGG - chr5_3:6970863-6970882 None:intergenic 50.0%
AATGCACTCGGACAACACCT+TGG - chr5_3:6971014-6971033 None:intergenic 50.0%
!! AAGGTGTTGTCCGAGTGCAT+TGG + chr5_3:6971013-6971032 Msa0795080:CDS 50.0%
! GTGCATTGGCGAACATCATG+CGG + chr5_3:6971027-6971046 Msa0795080:CDS 50.0%
CGAACATCATGCGGAAATGC+TGG + chr5_3:6971036-6971055 Msa0795080:CDS 50.0%
TGCGAATCCGATCAAACGTC+CGG + chr5_3:6971061-6971080 Msa0795080:CDS 50.0%
ACGTCCGGAAATGAAGGATG+TGG + chr5_3:6971076-6971095 Msa0795080:CDS 50.0%
GCACTGGATACAAGCAAAGG+GGG + chr5_3:6971113-6971132 Msa0795080:CDS 50.0%
GTTACCATTCTTTCCTGCGG+AGG + chr5_3:6971299-6971318 Msa0795080:three_prime_UTR 50.0%
!! TCTCCCCAATCACTGGTTCT+TGG + chr5_3:6971504-6971523 Msa0795080:three_prime_UTR 50.0%
CTGGATACAAGCAAAGGGGG+TGG + chr5_3:6971116-6971135 Msa0795080:CDS 55.0%
CTCTCCTCCGCAGGAAAGAA+TGG - chr5_3:6971306-6971325 None:intergenic 55.0%
CTTTCCTGCGGAGGAGAGAA+TGG + chr5_3:6971308-6971327 Msa0795080:three_prime_UTR 55.0%
ACAACCATTCTCTCCTCCGC+AGG - chr5_3:6971315-6971334 None:intergenic 55.0%
CTGGATACAAGCAAAGGGGG+TGG + chr5_3:6971116-6971135 Msa0795080:CDS 55.0%
CTCTCCTCCGCAGGAAAGAA+TGG - chr5_3:6971306-6971325 None:intergenic 55.0%
CTTTCCTGCGGAGGAGAGAA+TGG + chr5_3:6971308-6971327 Msa0795080:three_prime_UTR 55.0%
ACAACCATTCTCTCCTCCGC+AGG - chr5_3:6971315-6971334 None:intergenic 55.0%
GTCTTCCGCTGTCGTTCGTC+AGG + chr5_3:6970855-6970874 Msa0795080:CDS 60.0%
GTCTTCCGCTGTCGTTCGTC+AGG + chr5_3:6970855-6970874 Msa0795080:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 6969929 6971546 6969929 ID=Msa0795080;Name=Msa0795080
chr5_3 mRNA 6969929 6971546 6969929 ID=Msa0795080-mRNA-1;Parent=Msa0795080;Name=Msa0795080-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0.5|0.33|1|1|1|3|347|295
chr5_3 exon 6969929 6970474 6969929 ID=Msa0795080-mRNA-1:exon:2829;Parent=Msa0795080-mRNA-1
chr5_3 exon 6970742 6970876 6970742 ID=Msa0795080-mRNA-1:exon:2830;Parent=Msa0795080-mRNA-1
chr5_3 exon 6970993 6971546 6970993 ID=Msa0795080-mRNA-1:exon:2831;Parent=Msa0795080-mRNA-1
chr5_3 CDS 6969929 6970474 6969929 ID=Msa0795080-mRNA-1:cds;Parent=Msa0795080-mRNA-1
chr5_3 CDS 6970742 6970876 6970742 ID=Msa0795080-mRNA-1:cds;Parent=Msa0795080-mRNA-1
chr5_3 CDS 6970993 6971199 6970993 ID=Msa0795080-mRNA-1:cds;Parent=Msa0795080-mRNA-1
chr5_3 three_prime_UTR 6971200 6971546 6971200 ID=Msa0795080-mRNA-1:three_prime_utr;Parent=Msa0795080-mRNA-1
Gene Sequence

>Msa0795080

ATGGAGGAAACTTTTATTTCTTCCAAACCAGGTGGCAATGAAAAGAGCATTGATTTGAACCAAATCGCACTCCGACCTTTTCATCTTTCTGACCTTGATGAGCTCCTGGTATGGAGAGCTGATGAAAAAGTGGCCAAGTTCTGCTCTTGGGAACCATACACCAGCAAAGAACAAGGCATCAACTTCATTGAAAATATACCAAACAAATTTCTATGGTGCAAAGCAATATGCCTTAATGATCGTGCTATTGGCCGTGTTTCTCTGAAATCAAGATCACCTCATGATAAAAGCAGGAACAAAACTACAGAACTTGCCTATGTTCTAGGATCTAAATATTGGGGTAAAGGAATTGCCACGTATGTTGTGAAACAAGTTGTCAAGGTTGCATTCAGTGAGTTGTCACACTTAGAAAGAGTTGAAGCTTTTGTTGATGTTGAAAATGTTGGGTCTCAAAGAGTGTTGGAGAAAGCTGGTTTCCAGAAGGAAGGAATTCTTAGGAAGTATTTGTTCATGAAAGGAAAAAGTAGAGATATGATCATATTCAGTGTTTTGGATGGTAAACCTTACAACAGGACATGTGATGTATACAGCTTTGGCATTTGCTTGTGGGAAATTTATTGCTGTGATATGCCTTATCCAGATCTAAGCTTTGCTGATGTGTCTTCCGCTGTCGTTCGTCAGAATTTACGACCAGAAATTCCAAGGTGTTGTCCGAGTGCATTGGCGAACATCATGCGGAAATGCTGGGATGCGAATCCGATCAAACGTCCGGAAATGAAGGATGTGGTGATAATGCTAGAAGCACTGGATACAAGCAAAGGGGGTGGAATGATTCCTGAAGATCAAAGTTCAGGTTGCTTTTGTTTTGCACCTCAAAGAGGTCCTTAA

Protein sequence

>Msa0795080

MEETFISSKPGGNEKSIDLNQIALRPFHLSDLDELLVWRADEKVAKFCSWEPYTSKEQGINFIENIPNKFLWCKAICLNDRAIGRVSLKSRSPHDKSRNKTTELAYVLGSKYWGKGIATYVVKQVVKVAFSELSHLERVEAFVDVENVGSQRVLEKAGFQKEGILRKYLFMKGKSRDMIIFSVLDGKPYNRTCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVRQNLRPEIPRCCPSALANIMRKCWDANPIKRPEMKDVVIMLEALDTSKGGGMIPEDQSSGCFCFAPQRGP*