Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0225000 | AFK44462.1 | 81.633 | 98 | 10 | 1 | 2 | 91 | 409 | 506 | 1.74e-46 | 165 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0225000 | I3SW20 | 81.633 | 98 | 10 | 1 | 2 | 91 | 409 | 506 | 8.29e-47 | 165 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038350 | Msa0225000 | -0.825080 | 5.695478e-54 | -8.615850e-47 |
| Msa0145670 | Msa0225000 | 0.802936 | 4.427224e-49 | -8.615850e-47 |
| Msa0158020 | Msa0225000 | 0.805609 | 1.228993e-49 | -8.615850e-47 |
| Msa0185640 | Msa0225000 | -0.807953 | 3.929082e-50 | -8.615850e-47 |
| Msa0225000 | Msa0226250 | 0.809776 | 1.600846e-50 | -8.615850e-47 |
| Msa0225000 | Msa0258670 | -0.805409 | 1.353786e-49 | -8.615850e-47 |
| Msa0225000 | Msa0266000 | -0.810410 | 1.168710e-50 | -8.615850e-47 |
| Msa0225000 | Msa0269360 | 0.811588 | 6.494695e-51 | -8.615850e-47 |
| Msa0225000 | Msa0275670 | 0.815860 | 7.445836e-52 | -8.615850e-47 |
| Msa0225000 | Msa0298940 | 0.813648 | 2.300759e-51 | -8.615850e-47 |
| Msa0225000 | Msa0303990 | 0.854122 | 1.518617e-61 | -8.615850e-47 |
| Msa0225000 | Msa0304740 | 0.819589 | 1.072778e-52 | -8.615850e-47 |
| Msa0225000 | Msa0325470 | 0.820946 | 5.243027e-53 | -8.615850e-47 |
| Msa0225000 | Msa0331590 | 0.813174 | 2.925402e-51 | -8.615850e-47 |
| Msa0225000 | Msa0333720 | -0.829733 | 4.364393e-55 | -8.615850e-47 |
| Msa0225000 | Msa0342340 | -0.809928 | 1.484857e-50 | -8.615850e-47 |
| Msa0225000 | Msa0450050 | 0.805096 | 1.574556e-49 | -8.615850e-47 |
| Msa0225000 | Msa0459770 | -0.807489 | 4.929063e-50 | -8.615850e-47 |
| Msa0225000 | Msa0480980 | 0.805521 | 1.282551e-49 | -8.615850e-47 |
| Msa0225000 | Msa0526640 | -0.815896 | 7.307447e-52 | -8.615850e-47 |
| Msa0225000 | Msa0538700 | 0.819108 | 1.380868e-52 | -8.615850e-47 |
| Msa0225000 | Msa0574170 | 0.801089 | 1.061460e-48 | -8.615850e-47 |
| Msa0225000 | Msa0575250 | 0.801188 | 1.013065e-48 | -8.615850e-47 |
| Msa0225000 | Msa0581760 | 0.831227 | 1.881199e-55 | -8.615850e-47 |
| Msa0225000 | Msa0621890 | 0.821272 | 4.410310e-53 | -8.615850e-47 |
| Msa0225000 | Msa0638280 | 0.818606 | 1.795951e-52 | -8.615850e-47 |
| Msa0225000 | Msa0638320 | 0.815943 | 7.136230e-52 | -8.615850e-47 |
| Msa0225000 | Msa0657670 | 0.828670 | 7.902708e-55 | -8.615850e-47 |
| Msa0225000 | Msa0677270 | 0.809647 | 1.706379e-50 | -8.615850e-47 |
| Msa0225000 | Msa0722930 | 0.801122 | 1.045160e-48 | -8.615850e-47 |
| Msa0225000 | Msa0756630 | -0.815352 | 9.659458e-52 | -8.615850e-47 |
| Msa0225000 | Msa0766100 | -0.805132 | 1.547333e-49 | -8.615850e-47 |
| Msa0225000 | Msa0792510 | 0.821216 | 4.542134e-53 | -8.615850e-47 |
| Msa0225000 | Msa0845590 | -0.814047 | 1.879112e-51 | -8.615850e-47 |
| Msa0225000 | Msa0946120 | 0.816516 | 5.313054e-52 | -8.615850e-47 |
| Msa0225000 | Msa0968320 | -0.802846 | 4.621992e-49 | -8.615850e-47 |
| Msa0225000 | Msa0980440 | 0.821930 | 3.107445e-53 | -8.615850e-47 |
| Msa0225000 | Msa1008490 | 0.814248 | 1.697253e-51 | -8.615850e-47 |
| Msa0225000 | Msa1033440 | -0.805603 | 1.232738e-49 | -8.615850e-47 |
| Msa0225000 | Msa1036390 | 0.844109 | 9.265283e-59 | -8.615850e-47 |
| Msa0225000 | Msa1038050 | 0.809219 | 2.108556e-50 | -8.615850e-47 |
| Msa0225000 | Msa1040120 | 0.811109 | 8.250952e-51 | -8.615850e-47 |
| Msa0225000 | Msa1073110 | -0.815724 | 7.984378e-52 | -8.615850e-47 |
| Msa0225000 | Msa1076680 | 0.831711 | 1.429677e-55 | -8.615850e-47 |
| Msa0225000 | Msa1083410 | 0.805721 | 1.164174e-49 | -8.615850e-47 |
| Msa0225000 | Msa1098560 | 0.810637 | 1.043876e-50 | -8.615850e-47 |
| Msa0225000 | Msa1128160 | 0.825652 | 4.170702e-54 | -8.615850e-47 |
| Msa0225000 | Msa1129250 | 0.804051 | 2.600322e-49 | -8.615850e-47 |
| Msa0225000 | Msa1165360 | 0.821255 | 4.448979e-53 | -8.615850e-47 |
| Msa0225000 | Msa1170040 | -0.803564 | 3.282866e-49 | -8.615850e-47 |
| Msa0225000 | Msa1201990 | 0.813108 | 3.024809e-51 | -8.615850e-47 |
| Msa0225000 | Msa1204980 | -0.805222 | 1.481157e-49 | -8.615850e-47 |
| Msa0225000 | Msa1205010 | -0.808930 | 2.430857e-50 | -8.615850e-47 |
| Msa0225000 | Msa1220230 | 0.827237 | 1.747541e-54 | -8.615850e-47 |
| Msa0225000 | Msa1221200 | -0.822603 | 2.168621e-53 | -8.615850e-47 |
| Msa0225000 | Msa1222970 | 0.851235 | 1.012664e-60 | -8.615850e-47 |
| Msa0225000 | Msa1222990 | 0.803841 | 2.876115e-49 | -8.615850e-47 |
| Msa0225000 | Msa1229690 | 0.817345 | 3.460942e-52 | -8.615850e-47 |
| Msa0225000 | Msa1254770 | 0.800710 | 1.268471e-48 | -8.615850e-47 |
| Msa0225000 | Msa1254950 | 0.804317 | 2.289505e-49 | -8.615850e-47 |
| Msa0225000 | Msa1256540 | -0.808772 | 2.628456e-50 | -8.615850e-47 |
| Msa0225000 | Msa1261470 | 0.826852 | 2.160435e-54 | -8.615850e-47 |
| Msa0225000 | Msa1264020 | 0.838597 | 2.615792e-57 | -8.615850e-47 |
| Msa0225000 | Msa1265960 | 0.829872 | 4.035816e-55 | -8.615850e-47 |
| Msa0225000 | Msa1284220 | 0.816746 | 4.717420e-52 | -8.615850e-47 |
| Msa0225000 | Msa1296960 | -0.815206 | 1.040940e-51 | -8.615850e-47 |
| Msa0225000 | Msa1304180 | 0.823213 | 1.562941e-53 | -8.615850e-47 |
| Msa0225000 | Msa1329990 | 0.821287 | 4.375265e-53 | -8.615850e-47 |
| Msa0225000 | Msa1335860 | 0.831399 | 1.706541e-55 | -8.615850e-47 |
| Msa0225000 | Msa1353530 | 0.804112 | 2.526109e-49 | -8.615850e-47 |
| Msa0225000 | Msa1358870 | -0.806671 | 7.345920e-50 | -8.615850e-47 |
| Msa0225000 | Msa1367080 | 0.844829 | 5.930999e-59 | -8.615850e-47 |
| Msa0225000 | Msa1373950 | 0.810517 | 1.108502e-50 | -8.615850e-47 |
| Msa0225000 | Msa1385900 | 0.808799 | 2.593226e-50 | -8.615850e-47 |
| Msa0225000 | Msa1411070 | 0.802463 | 5.544501e-49 | -8.615850e-47 |
| Msa0225000 | Msa1427760 | 0.828602 | 8.207541e-55 | -8.615850e-47 |
| Msa0225000 | Msa1431000 | 0.826018 | 3.414624e-54 | -8.615850e-47 |
| Msa0225000 | Msa1438270 | 0.804966 | 1.676329e-49 | -8.615850e-47 |
| Msa0225000 | Msa1454290 | -0.803891 | 2.807226e-49 | -8.615850e-47 |
| Msa0225000 | Msa1464560 | 0.807935 | 3.964196e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0225000 | MtrunA17_Chr2g0331241 | 81.633 | 98 | 10 | 1 | 2 | 91 | 409 | 506 | 1.74e-50 | 165 |
| Msa0225000 | MtrunA17_Chr8g0350901 | 94.118 | 51 | 3 | 0 | 41 | 91 | 11 | 61 | 7.06e-32 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0225000 | AT3G16230.13 | 59.783 | 92 | 28 | 1 | 3 | 85 | 229 | 320 | 5.62e-31 | 111 |
| Msa0225000 | AT3G16230.3 | 59.783 | 92 | 28 | 1 | 3 | 85 | 313 | 404 | 1.01e-30 | 112 |
| Msa0225000 | AT3G16230.12 | 59.783 | 92 | 28 | 1 | 3 | 85 | 313 | 404 | 1.01e-30 | 112 |
| Msa0225000 | AT3G16230.10 | 59.783 | 92 | 28 | 1 | 3 | 85 | 353 | 444 | 2.06e-30 | 111 |
| Msa0225000 | AT3G16230.2 | 59.783 | 92 | 28 | 1 | 3 | 85 | 353 | 444 | 2.06e-30 | 111 |
| Msa0225000 | AT3G16230.1 | 59.783 | 92 | 28 | 1 | 3 | 85 | 353 | 444 | 2.06e-30 | 111 |
| Msa0225000 | AT3G16220.1 | 46.591 | 88 | 40 | 2 | 4 | 85 | 169 | 255 | 7.09e-21 | 83.6 |
Find 14 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATATAAGCCGCTGGTGTTC+AGG | 0.332174 | 2_1:+75050803 | Msa0225000:intron |
| CGAAACATATTCAAGCAGTA+TGG | 0.390783 | 2_1:+75050862 | Msa0225000:CDS |
| CGCTGGTGTTCAGGACAAAT+CGG | 0.437383 | 2_1:+75050812 | Msa0225000:CDS |
| TGTTAAAGCTGGACTTGTCT+TGG | 0.438646 | 2_1:+75050114 | Msa0225000:CDS |
| GCAGTATGGATCAGAGGACT+GGG | 0.480693 | 2_1:+75050876 | Msa0225000:CDS |
| ATTGATGCATATGTTAAAGC+TGG | 0.482111 | 2_1:+75050103 | Msa0225000:CDS |
| AGCAGTATGGATCAGAGGAC+TGG | 0.508829 | 2_1:+75050875 | Msa0225000:CDS |
| TGATGCTAAACAAGGACTGA+AGG | 0.585400 | 2_1:+75050141 | Msa0225000:CDS |
| CGATTTGTCCTGAACACCAG+CGG | 0.594621 | 2_1:-75050811 | None:intergenic |
| AGTATGGATCAGAGGACTGG+GGG | 0.620757 | 2_1:+75050878 | Msa0225000:CDS |
| ATTCAAGCAGTATGGATCAG+AGG | 0.622044 | 2_1:+75050870 | Msa0225000:CDS |
| TTGGAGAATGATGCTAAACA+AGG | 0.654196 | 2_1:+75050133 | Msa0225000:CDS |
| CAGTATGGATCAGAGGACTG+GGG | 0.660986 | 2_1:+75050877 | Msa0225000:CDS |
| GTATGGATCAGAGGACTGGG+GGG | 0.685351 | 2_1:+75050879 | Msa0225000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATACAAATGTAATTCA+TGG | - | chr2_1:75050362-75050381 | None:intergenic | 15.0% |
| !! | AAATATACAAATGTAATTCA+TGG | - | chr2_1:75050362-75050381 | None:intergenic | 15.0% |
| !! | TGAAGGTAAATTAAATTTAG+CGG | + | chr2_1:75050158-75050177 | Msa0225000:intron | 20.0% |
| !!! | AAAGTAATCATATTGATAGT+AGG | - | chr2_1:75050240-75050259 | None:intergenic | 20.0% |
| !! | TACTATCAATATGATTACTT+TGG | + | chr2_1:75050239-75050258 | Msa0225000:intron | 20.0% |
| !! | CAGATAACAAAATGAAATTA+TGG | - | chr2_1:75050303-75050322 | None:intergenic | 20.0% |
| !!! | TTTCCAGCTTTAAATTATAA+AGG | + | chr2_1:75050444-75050463 | Msa0225000:intron | 20.0% |
| !!! | AAACCTTTATAATTTAAAGC+TGG | - | chr2_1:75050450-75050469 | None:intergenic | 20.0% |
| !!! | GCTTTAAATTATAAAGGTTT+TGG | + | chr2_1:75050450-75050469 | Msa0225000:intron | 20.0% |
| !! | GTCTAAAAGAAAAGATAAAA+GGG | - | chr2_1:75050701-75050720 | None:intergenic | 20.0% |
| !! | AGTCTAAAAGAAAAGATAAA+AGG | - | chr2_1:75050702-75050721 | None:intergenic | 20.0% |
| !!! | AACAATGTTTTAAAAAGCAA+GGG | - | chr2_1:75050760-75050779 | None:intergenic | 20.0% |
| !!! | TAACAATGTTTTAAAAAGCA+AGG | - | chr2_1:75050761-75050780 | None:intergenic | 20.0% |
| !! | TGAAGGTAAATTAAATTTAG+CGG | + | chr2_1:75050158-75050177 | Msa0225000:intron | 20.0% |
| !!! | AAAGTAATCATATTGATAGT+AGG | - | chr2_1:75050240-75050259 | None:intergenic | 20.0% |
| !! | TACTATCAATATGATTACTT+TGG | + | chr2_1:75050239-75050258 | Msa0225000:intron | 20.0% |
| !! | CAGATAACAAAATGAAATTA+TGG | - | chr2_1:75050303-75050322 | None:intergenic | 20.0% |
| !!! | TTTCCAGCTTTAAATTATAA+AGG | + | chr2_1:75050444-75050463 | Msa0225000:intron | 20.0% |
| !!! | AAACCTTTATAATTTAAAGC+TGG | - | chr2_1:75050450-75050469 | None:intergenic | 20.0% |
| !!! | GCTTTAAATTATAAAGGTTT+TGG | + | chr2_1:75050450-75050469 | Msa0225000:intron | 20.0% |
| !! | GTCTAAAAGAAAAGATAAAA+GGG | - | chr2_1:75050701-75050720 | None:intergenic | 20.0% |
| !! | AGTCTAAAAGAAAAGATAAA+AGG | - | chr2_1:75050702-75050721 | None:intergenic | 20.0% |
| !!! | AACAATGTTTTAAAAAGCAA+GGG | - | chr2_1:75050760-75050779 | None:intergenic | 20.0% |
| !!! | TAACAATGTTTTAAAAAGCA+AGG | - | chr2_1:75050761-75050780 | None:intergenic | 20.0% |
| ! | TAGTATGTATAATCAAAACC+AGG | - | chr2_1:75050043-75050062 | None:intergenic | 25.0% |
| !! | AATATGATTACTTTGGTTCA+AGG | + | chr2_1:75050246-75050265 | Msa0225000:intron | 25.0% |
| !! | TATAATTTAAAGCTGGAAAG+AGG | - | chr2_1:75050443-75050462 | None:intergenic | 25.0% |
| ! | ACGAGAAAAAAAACTAAAGA+AGG | + | chr2_1:75050498-75050517 | Msa0225000:intron | 25.0% |
| !!! | AAAGTACAGTCTTATTATGA+AGG | - | chr2_1:75050560-75050579 | None:intergenic | 25.0% |
| !! | AGATTTTCATTTGATGAGAA+TGG | + | chr2_1:75050934-75050953 | Msa0225000:CDS | 25.0% |
| ! | TAGTATGTATAATCAAAACC+AGG | - | chr2_1:75050043-75050062 | None:intergenic | 25.0% |
| !! | AATATGATTACTTTGGTTCA+AGG | + | chr2_1:75050246-75050265 | Msa0225000:intron | 25.0% |
| !! | TATAATTTAAAGCTGGAAAG+AGG | - | chr2_1:75050443-75050462 | None:intergenic | 25.0% |
| ! | ACGAGAAAAAAAACTAAAGA+AGG | + | chr2_1:75050498-75050517 | Msa0225000:intron | 25.0% |
| !!! | AAAGTACAGTCTTATTATGA+AGG | - | chr2_1:75050560-75050579 | None:intergenic | 25.0% |
| !! | AGATTTTCATTTGATGAGAA+TGG | + | chr2_1:75050934-75050953 | Msa0225000:CDS | 25.0% |
| ATTGATGCATATGTTAAAGC+TGG | + | chr2_1:75050103-75050122 | Msa0225000:CDS | 30.0% | |
| GTAATTCATGGTCAAAACAT+GGG | - | chr2_1:75050350-75050369 | None:intergenic | 30.0% | |
| TGTAATTCATGGTCAAAACA+TGG | - | chr2_1:75050351-75050370 | None:intergenic | 30.0% | |
| TGCATAAGTAACATTGATAC+TGG | - | chr2_1:75050396-75050415 | None:intergenic | 30.0% | |
| !! | ATGCATTATTTCTAGCAGAA+TGG | + | chr2_1:75050411-75050430 | Msa0225000:intron | 30.0% |
| !! | ACAGTCTTATTATGAAGGTA+AGG | - | chr2_1:75050555-75050574 | None:intergenic | 30.0% |
| TTATACTTTGCTTGTAGGTT+TGG | + | chr2_1:75050590-75050609 | Msa0225000:intron | 30.0% | |
| ATTGATGCATATGTTAAAGC+TGG | + | chr2_1:75050103-75050122 | Msa0225000:CDS | 30.0% | |
| GTAATTCATGGTCAAAACAT+GGG | - | chr2_1:75050350-75050369 | None:intergenic | 30.0% | |
| TGTAATTCATGGTCAAAACA+TGG | - | chr2_1:75050351-75050370 | None:intergenic | 30.0% | |
| TGCATAAGTAACATTGATAC+TGG | - | chr2_1:75050396-75050415 | None:intergenic | 30.0% | |
| !! | ATGCATTATTTCTAGCAGAA+TGG | + | chr2_1:75050411-75050430 | Msa0225000:intron | 30.0% |
| !! | ACAGTCTTATTATGAAGGTA+AGG | - | chr2_1:75050555-75050574 | None:intergenic | 30.0% |
| TTATACTTTGCTTGTAGGTT+TGG | + | chr2_1:75050590-75050609 | Msa0225000:intron | 30.0% | |
| TTGGAGAATGATGCTAAACA+AGG | + | chr2_1:75050133-75050152 | Msa0225000:CDS | 35.0% | |
| GAAGGTTATCATCTTCTTTG+AGG | + | chr2_1:75050516-75050535 | Msa0225000:intron | 35.0% | |
| AAGCAAAGTATAACAGCATG+GGG | - | chr2_1:75050583-75050602 | None:intergenic | 35.0% | |
| CAAGCAAAGTATAACAGCAT+GGG | - | chr2_1:75050584-75050603 | None:intergenic | 35.0% | |
| ACAAGCAAAGTATAACAGCA+TGG | - | chr2_1:75050585-75050604 | None:intergenic | 35.0% | |
| TGCTGTTATACTTTGCTTGT+AGG | + | chr2_1:75050585-75050604 | Msa0225000:intron | 35.0% | |
| CGAAACATATTCAAGCAGTA+TGG | + | chr2_1:75050862-75050881 | Msa0225000:CDS | 35.0% | |
| !! | CCTGCATATTTTCAGGAAAA+GGG | - | chr2_1:75050984-75051003 | None:intergenic | 35.0% |
| !! | ACCTGCATATTTTCAGGAAA+AGG | - | chr2_1:75050985-75051004 | None:intergenic | 35.0% |
| TTGGAGAATGATGCTAAACA+AGG | + | chr2_1:75050133-75050152 | Msa0225000:CDS | 35.0% | |
| GAAGGTTATCATCTTCTTTG+AGG | + | chr2_1:75050516-75050535 | Msa0225000:intron | 35.0% | |
| AAGCAAAGTATAACAGCATG+GGG | - | chr2_1:75050583-75050602 | None:intergenic | 35.0% | |
| CAAGCAAAGTATAACAGCAT+GGG | - | chr2_1:75050584-75050603 | None:intergenic | 35.0% | |
| ACAAGCAAAGTATAACAGCA+TGG | - | chr2_1:75050585-75050604 | None:intergenic | 35.0% | |
| TGCTGTTATACTTTGCTTGT+AGG | + | chr2_1:75050585-75050604 | Msa0225000:intron | 35.0% | |
| CGAAACATATTCAAGCAGTA+TGG | + | chr2_1:75050862-75050881 | Msa0225000:CDS | 35.0% | |
| !! | CCTGCATATTTTCAGGAAAA+GGG | - | chr2_1:75050984-75051003 | None:intergenic | 35.0% |
| !! | ACCTGCATATTTTCAGGAAA+AGG | - | chr2_1:75050985-75051004 | None:intergenic | 35.0% |
| TGTTAAAGCTGGACTTGTCT+TGG | + | chr2_1:75050114-75050133 | Msa0225000:CDS | 40.0% | |
| TGATGCTAAACAAGGACTGA+AGG | + | chr2_1:75050141-75050160 | Msa0225000:CDS | 40.0% | |
| GAAGGTAAGGTTTCCTATCA+GGG | - | chr2_1:75050542-75050561 | None:intergenic | 40.0% | |
| TGAAGGTAAGGTTTCCTATC+AGG | - | chr2_1:75050543-75050562 | None:intergenic | 40.0% | |
| ATGCCTTGCATTCATCAAAG+TGG | - | chr2_1:75050661-75050680 | None:intergenic | 40.0% | |
| CTTTGATGAATGCAAGGCAT+AGG | + | chr2_1:75050661-75050680 | Msa0225000:intron | 40.0% | |
| TGAATGCAAGGCATAGGAAA+AGG | + | chr2_1:75050667-75050686 | Msa0225000:intron | 40.0% | |
| ATGTTCAGCAGCAAAAGCTA+AGG | - | chr2_1:75050734-75050753 | None:intergenic | 40.0% | |
| AAATAGCTGATATAAGCCGC+TGG | + | chr2_1:75050795-75050814 | Msa0225000:intron | 40.0% | |
| ATTCAAGCAGTATGGATCAG+AGG | + | chr2_1:75050870-75050889 | Msa0225000:CDS | 40.0% | |
| ! | CCCTTTTCCTGAAAATATGC+AGG | + | chr2_1:75050981-75051000 | Msa0225000:CDS | 40.0% |
| ! | CACTCTACCTGCATATTTTC+AGG | - | chr2_1:75050991-75051010 | None:intergenic | 40.0% |
| TGTTAAAGCTGGACTTGTCT+TGG | + | chr2_1:75050114-75050133 | Msa0225000:CDS | 40.0% | |
| TGATGCTAAACAAGGACTGA+AGG | + | chr2_1:75050141-75050160 | Msa0225000:CDS | 40.0% | |
| GAAGGTAAGGTTTCCTATCA+GGG | - | chr2_1:75050542-75050561 | None:intergenic | 40.0% | |
| TGAAGGTAAGGTTTCCTATC+AGG | - | chr2_1:75050543-75050562 | None:intergenic | 40.0% | |
| ATGCCTTGCATTCATCAAAG+TGG | - | chr2_1:75050661-75050680 | None:intergenic | 40.0% | |
| CTTTGATGAATGCAAGGCAT+AGG | + | chr2_1:75050661-75050680 | Msa0225000:intron | 40.0% | |
| TGAATGCAAGGCATAGGAAA+AGG | + | chr2_1:75050667-75050686 | Msa0225000:intron | 40.0% | |
| ATGTTCAGCAGCAAAAGCTA+AGG | - | chr2_1:75050734-75050753 | None:intergenic | 40.0% | |
| AAATAGCTGATATAAGCCGC+TGG | + | chr2_1:75050795-75050814 | Msa0225000:intron | 40.0% | |
| ATTCAAGCAGTATGGATCAG+AGG | + | chr2_1:75050870-75050889 | Msa0225000:CDS | 40.0% | |
| ! | CCCTTTTCCTGAAAATATGC+AGG | + | chr2_1:75050981-75051000 | Msa0225000:CDS | 40.0% |
| ! | CACTCTACCTGCATATTTTC+AGG | - | chr2_1:75050991-75051010 | None:intergenic | 40.0% |
| TATGGATCTGTCATCGTACC+TGG | + | chr2_1:75050022-75050041 | Msa0225000:intron | 45.0% | |
| !! | ATCTTCTTTGAGGCCCTGAT+AGG | + | chr2_1:75050526-75050545 | Msa0225000:intron | 45.0% |
| ! | ACGCCACTTTGATGAATGCA+AGG | + | chr2_1:75050655-75050674 | Msa0225000:intron | 45.0% |
| TATGGATCTGTCATCGTACC+TGG | + | chr2_1:75050022-75050041 | Msa0225000:intron | 45.0% | |
| !! | ATCTTCTTTGAGGCCCTGAT+AGG | + | chr2_1:75050526-75050545 | Msa0225000:intron | 45.0% |
| ! | ACGCCACTTTGATGAATGCA+AGG | + | chr2_1:75050655-75050674 | Msa0225000:intron | 45.0% |
| !!! | AAAGTTTTTTTTTTTTTTTT+TGG | + | chr2_1:75049978-75049997 | Msa0225000:intron | 5.0% |
| !!! | AAGTTTTTTTTTTTTTTTTT+GGG | + | chr2_1:75049979-75049998 | Msa0225000:intron | 5.0% |
| !! | TTATAAATTACAAATAATTA+TGG | + | chr2_1:75050004-75050023 | Msa0225000:intron | 5.0% |
| !!! | AAAGTTTTTTTTTTTTTTTT+TGG | + | chr2_1:75049978-75049997 | Msa0225000:intron | 5.0% |
| !!! | AAGTTTTTTTTTTTTTTTTT+GGG | + | chr2_1:75049979-75049998 | Msa0225000:intron | 5.0% |
| !! | TTATAAATTACAAATAATTA+TGG | + | chr2_1:75050004-75050023 | Msa0225000:intron | 5.0% |
| GATATAAGCCGCTGGTGTTC+AGG | + | chr2_1:75050803-75050822 | Msa0225000:intron | 50.0% | |
| CGATTTGTCCTGAACACCAG+CGG | - | chr2_1:75050814-75050833 | None:intergenic | 50.0% | |
| CGCTGGTGTTCAGGACAAAT+CGG | + | chr2_1:75050812-75050831 | Msa0225000:CDS | 50.0% | |
| AGCAGTATGGATCAGAGGAC+TGG | + | chr2_1:75050875-75050894 | Msa0225000:CDS | 50.0% | |
| GCAGTATGGATCAGAGGACT+GGG | + | chr2_1:75050876-75050895 | Msa0225000:CDS | 50.0% | |
| CAGTATGGATCAGAGGACTG+GGG | + | chr2_1:75050877-75050896 | Msa0225000:CDS | 50.0% | |
| AGTATGGATCAGAGGACTGG+GGG | + | chr2_1:75050878-75050897 | Msa0225000:CDS | 50.0% | |
| GATATAAGCCGCTGGTGTTC+AGG | + | chr2_1:75050803-75050822 | Msa0225000:intron | 50.0% | |
| CGATTTGTCCTGAACACCAG+CGG | - | chr2_1:75050814-75050833 | None:intergenic | 50.0% | |
| CGCTGGTGTTCAGGACAAAT+CGG | + | chr2_1:75050812-75050831 | Msa0225000:CDS | 50.0% | |
| AGCAGTATGGATCAGAGGAC+TGG | + | chr2_1:75050875-75050894 | Msa0225000:CDS | 50.0% | |
| GCAGTATGGATCAGAGGACT+GGG | + | chr2_1:75050876-75050895 | Msa0225000:CDS | 50.0% | |
| CAGTATGGATCAGAGGACTG+GGG | + | chr2_1:75050877-75050896 | Msa0225000:CDS | 50.0% | |
| AGTATGGATCAGAGGACTGG+GGG | + | chr2_1:75050878-75050897 | Msa0225000:CDS | 50.0% | |
| GTATGGATCAGAGGACTGGG+GGG | + | chr2_1:75050879-75050898 | Msa0225000:CDS | 55.0% | |
| GTATGGATCAGAGGACTGGG+GGG | + | chr2_1:75050879-75050898 | Msa0225000:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 75049953 | 75051011 | 75049953 | ID=Msa0225000;Name=Msa0225000 |
| chr2_1 | mRNA | 75049953 | 75051011 | 75049953 | ID=Msa0225000-mRNA-1;Parent=Msa0225000;Name=Msa0225000-mRNA-1;_AED=0.50;_eAED=0.57;_QI=0|0|0|0.66|1|1|3|0|91 |
| chr2_1 | exon | 75049953 | 75049959 | 75049953 | ID=Msa0225000-mRNA-1:exon:22401;Parent=Msa0225000-mRNA-1 |
| chr2_1 | exon | 75050095 | 75050162 | 75050095 | ID=Msa0225000-mRNA-1:exon:22402;Parent=Msa0225000-mRNA-1 |
| chr2_1 | exon | 75050811 | 75051011 | 75050811 | ID=Msa0225000-mRNA-1:exon:22403;Parent=Msa0225000-mRNA-1 |
| chr2_1 | CDS | 75049953 | 75049959 | 75049953 | ID=Msa0225000-mRNA-1:cds;Parent=Msa0225000-mRNA-1 |
| chr2_1 | CDS | 75050095 | 75050162 | 75050095 | ID=Msa0225000-mRNA-1:cds;Parent=Msa0225000-mRNA-1 |
| chr2_1 | CDS | 75050811 | 75051011 | 75050811 | ID=Msa0225000-mRNA-1:cds;Parent=Msa0225000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
