AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1097430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1097430 MtrunA17_Chr7g0221181 91.964 224 17 1 1 224 1 223 5.62e-155 428
Msa1097430 MtrunA17_Chr5g0397281 32.639 144 97 0 78 221 82 225 1.04e-27 106
Msa1097430 MtrunA17_Chr3g0126191 26.570 207 140 3 15 221 34 228 8.65e-26 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1097430 AT1G71480.1 55.157 223 85 4 9 224 2 216 9.25e-80 238
Msa1097430 AT1G71480.3 52.632 171 67 3 22 186 16 178 2.38e-55 175
Msa1097430 AT1G71480.2 45.139 144 65 3 22 159 16 151 2.50e-34 120
Msa1097430 AT5G41470.1 38.194 144 89 0 78 221 74 217 3.46e-34 123

Find 56 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAACCTTAGTAACTGAATT+TGG 0.196315 7_3:-22710377 None:intergenic
TAAAAGCTCTACATTATTTC+CGG 0.248229 7_3:+22713463 Msa1097430:three_prime_UTR
GTTGGAGTGATCTGGCATTT+AGG 0.265081 7_3:+22710824 Msa1097430:CDS
GCATCCCCTGGTTTGATTGC+AGG 0.283177 7_3:-22713172 None:intergenic
GTTACTAAGGTTGTTGGAAT+TGG 0.290285 7_3:+22710386 Msa1097430:CDS
AATCAAATTACCACACTATT+CGG 0.293762 7_3:-22713508 None:intergenic
AGTGGAGCATAAAATGTTTA+TGG 0.309641 7_3:+22710268 Msa1097430:exon
CACACTATTCGGGAGAAATA+TGG 0.309754 7_3:-22713497 None:intergenic
GTCTTTCCACGTCCATTTGT+GGG 0.340761 7_3:+22710614 Msa1097430:CDS
CACTTTCACTTTCTCTATGT+TGG 0.367818 7_3:-22713562 None:intergenic
GTGGTAATTTGATTGTAGTT+TGG 0.368499 7_3:+22713517 Msa1097430:three_prime_UTR
AAGAGCCAGAAAATGGAATA+TGG 0.378148 7_3:+22710415 Msa1097430:CDS
AATAAACTGCAGATCCTTGC+TGG 0.394776 7_3:-22710768 None:intergenic
TGTCTTTCCACGTCCATTTG+TGG 0.401046 7_3:+22710613 Msa1097430:CDS
CATCATTAGTTGGAGTGATC+TGG 0.412383 7_3:+22710816 Msa1097430:CDS
AATTCAGTTACTAAGGTTGT+TGG 0.412689 7_3:+22710380 Msa1097430:CDS
CAAACCAGGGGATGCAACTT+TGG 0.423933 7_3:+22713180 Msa1097430:CDS
TGCTCCAAATTCAGTTACTA+AGG 0.429738 7_3:+22710373 Msa1097430:CDS
ATCAAATTACCACACTATTC+GGG 0.431740 7_3:-22713507 None:intergenic
AAACTGCATCCTTTGCTAAA+GGG 0.439731 7_3:-22711666 None:intergenic
TTGAAGAGTCTATGTGGTAC+TGG 0.444533 7_3:+22710241 Msa1097430:five_prime_UTR
CTCTGAAAATTGTGTGTATG+AGG 0.451410 7_3:+22710586 Msa1097430:CDS
CATCCTTTGCTAAAGGGAAA+AGG 0.457962 7_3:-22711660 None:intergenic
AAAACTGCATCCTTTGCTAA+AGG 0.460379 7_3:-22711667 None:intergenic
ACGGAGGATTCATCATTAGT+TGG 0.464164 7_3:+22710806 Msa1097430:CDS
TATCGTTTGGAAGTGATCAA+TGG 0.466251 7_3:+22711690 Msa1097430:CDS
ATTACCTTACGACCCACAAA+TGG 0.468812 7_3:-22710626 None:intergenic
AAATATGGAACACGCCCATC+CGG 0.487762 7_3:-22713482 None:intergenic
CATACCAAAGTTGCATCCCC+TGG 0.503204 7_3:-22713184 None:intergenic
TCTTCAACGATTTCCTCAGT+TGG 0.516832 7_3:+22713426 Msa1097430:CDS
AGTAGTGAGAAATTTCTATG+AGG 0.519129 7_3:+22710523 Msa1097430:CDS
ACGTCCATTTGTGGGTCGTA+AGG 0.526163 7_3:+22710622 Msa1097430:CDS
TATTATTGATGATTTGTCTA+CGG 0.526853 7_3:+22710787 Msa1097430:CDS
AGCTCTACATTATTTCCGGA+TGG 0.530752 7_3:+22713467 Msa1097430:three_prime_UTR
GTAGTGAGAAATTTCTATGA+GGG 0.544610 7_3:+22710524 Msa1097430:CDS
GTTGAACCTGCAATCAAACC+AGG 0.559841 7_3:+22713166 Msa1097430:CDS
GCTCTACATTATTTCCGGAT+GGG 0.570070 7_3:+22713468 Msa1097430:three_prime_UTR
CTATGTGACAACGAAGTCAA+AGG 0.570861 7_3:-22710341 None:intergenic
CTATGTGGTACTGGGTGAAG+TGG 0.575860 7_3:+22710250 Msa1097430:five_prime_UTR
CCTGATAAACAGATATGGAC+GGG 0.580836 7_3:+22713138 Msa1097430:intron
TTAAGTTTGAAGAGTCTATG+TGG 0.602776 7_3:+22710235 Msa1097430:five_prime_UTR
TCCTGATAAACAGATATGGA+CGG 0.603155 7_3:+22713137 Msa1097430:intron
TACAATCGGTTTGCCAACTG+AGG 0.604512 7_3:-22713439 None:intergenic
TATTGATGATTTGTCTACGG+AGG 0.608974 7_3:+22710790 Msa1097430:CDS
CATATTTCTCCCGAATAGTG+TGG 0.612826 7_3:+22713498 Msa1097430:three_prime_UTR
GGGAATCAATGCACATGATG+TGG 0.616754 7_3:+22710544 Msa1097430:CDS
GTTCACTGATTCTACCAGCA+AGG 0.619438 7_3:+22710754 Msa1097430:CDS
TTACGACCCACAAATGGACG+TGG 0.627873 7_3:-22710620 None:intergenic
CAATTATAAAGAGTGTGACA+TGG 0.645180 7_3:+22713401 Msa1097430:CDS
TTAATGAACGCAGAATGGAA+AGG 0.649332 7_3:+22711633 Msa1097430:intron
TTGAACCTGCAATCAAACCA+GGG 0.662159 7_3:+22713167 Msa1097430:CDS
GTTATCATCAAAGTGTGTGG+TGG 0.667910 7_3:-22710477 None:intergenic
TGAAGAGTCTATGTGGTACT+GGG 0.670990 7_3:+22710242 Msa1097430:five_prime_UTR
AATATGGCAGTTAATAACAG+TGG 0.699800 7_3:+22710431 Msa1097430:CDS
TGAACCTGCAATCAAACCAG+GGG 0.719717 7_3:+22713168 Msa1097430:CDS
GTTGTTATCATCAAAGTGTG+TGG 0.725799 7_3:-22710480 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACTTACTACTAAATAA+GGG - chr7_3:22711167-22711186 None:intergenic 15.0%
!! ATCTATTTAAATCTAAGTAT+GGG + chr7_3:22711922-22711941 Msa1097430:intron 15.0%
!!! TTATTTATTCTATTTCTCAA+TGG + chr7_3:22712641-22712660 Msa1097430:intron 15.0%
!! TAGAAGAAGTTTATAAAAAG+TGG + chr7_3:22710680-22710699 Msa1097430:intron 20.0%
!!! AATTACTAGTACTATTTTAC+AGG + chr7_3:22710709-22710728 Msa1097430:intron 20.0%
!!! TATTATTGATGATTTGTCTA+CGG + chr7_3:22710787-22710806 Msa1097430:CDS 20.0%
!! CAAATGTATAGATATAAAGA+AGG - chr7_3:22710867-22710886 None:intergenic 20.0%
!! AAAACTTACTACTAAATAAG+GGG - chr7_3:22711166-22711185 None:intergenic 20.0%
!! CAAAAACTTACTACTAAATA+AGG - chr7_3:22711168-22711187 None:intergenic 20.0%
!!! CTTATTTAGTAGTAAGTTTT+TGG + chr7_3:22711166-22711185 Msa1097430:intron 20.0%
!! TGAAAATGATTCCAAAATAT+TGG + chr7_3:22711527-22711546 Msa1097430:intron 20.0%
!!! CTAAAAAGAATCCAATATTT+TGG - chr7_3:22711541-22711560 None:intergenic 20.0%
!! GATCTATTTAAATCTAAGTA+TGG + chr7_3:22711921-22711940 Msa1097430:intron 20.0%
!! GGAAGACTATAAAAATTATT+TGG + chr7_3:22712178-22712197 Msa1097430:intron 20.0%
!!! AGTAACTTGTTTAATTTTTC+TGG + chr7_3:22712443-22712462 Msa1097430:intron 20.0%
!!! GTAACTTGTTTAATTTTTCT+GGG + chr7_3:22712444-22712463 Msa1097430:intron 20.0%
! TTTGGAAGTTACTAATAGAT+AGG - chr7_3:22711584-22711603 None:intergenic 25.0%
! ATCTATTAGTAACTTCCAAA+AGG + chr7_3:22711584-22711603 Msa1097430:intron 25.0%
!! AATACATTACATACACCTTT+TGG - chr7_3:22711602-22711621 None:intergenic 25.0%
! TGATGATTATATTCTTGTAG+AGG + chr7_3:22711868-22711887 Msa1097430:intron 25.0%
! CTTGGAAAACTATACAAAAT+TGG + chr7_3:22712235-22712254 Msa1097430:intron 25.0%
! TTTGATCCAAAATAGCAAAA+TGG + chr7_3:22712384-22712403 Msa1097430:intron 25.0%
!! CAAGTAATTTTTCATGACAA+AGG + chr7_3:22712550-22712569 Msa1097430:intron 25.0%
!! TGTTTAGGTTTAATGTGTAA+TGG + chr7_3:22712670-22712689 Msa1097430:intron 25.0%
!! TAGTAATTTGTATCAGTGTT+CGG + chr7_3:22712780-22712799 Msa1097430:intron 25.0%
!!! GATTTTAGCAGAATAGTTTA+TGG + chr7_3:22712886-22712905 Msa1097430:intron 25.0%
!!! TTAATGTTTTTGTTCCCATT+CGG + chr7_3:22713030-22713049 Msa1097430:intron 25.0%
! TAAAAGCTCTACATTATTTC+CGG + chr7_3:22713463-22713482 Msa1097430:three_prime_UTR 25.0%
! AATCAAATTACCACACTATT+CGG - chr7_3:22713511-22713530 None:intergenic 25.0%
TTAAGTTTGAAGAGTCTATG+TGG + chr7_3:22710235-22710254 Msa1097430:five_prime_UTR 30.0%
AGTGGAGCATAAAATGTTTA+TGG + chr7_3:22710268-22710287 Msa1097430:exon 30.0%
ACAACCTTAGTAACTGAATT+TGG - chr7_3:22710380-22710399 None:intergenic 30.0%
AATTCAGTTACTAAGGTTGT+TGG + chr7_3:22710380-22710399 Msa1097430:CDS 30.0%
AATATGGCAGTTAATAACAG+TGG + chr7_3:22710431-22710450 Msa1097430:CDS 30.0%
AGTAGTGAGAAATTTCTATG+AGG + chr7_3:22710523-22710542 Msa1097430:CDS 30.0%
GTAGTGAGAAATTTCTATGA+GGG + chr7_3:22710524-22710543 Msa1097430:CDS 30.0%
TTAACTTTGTGTTTCAATGC+AGG - chr7_3:22710993-22711012 None:intergenic 30.0%
AATATGAATTGAGTGGTACT+CGG + chr7_3:22711134-22711153 Msa1097430:intron 30.0%
AGAACAATCAGTCAAAAGAT+TGG - chr7_3:22711212-22711231 None:intergenic 30.0%
AACTGTTATTGAGATACTAG+TGG - chr7_3:22711359-22711378 None:intergenic 30.0%
! ATTTGTTAATGAACGCAGAA+TGG + chr7_3:22711628-22711647 Msa1097430:intron 30.0%
!!! ACTCAACCATTTTGCTATTT+TGG - chr7_3:22712393-22712412 None:intergenic 30.0%
AATAGCAAAATGGTTGAGTT+TGG + chr7_3:22712394-22712413 Msa1097430:intron 30.0%
AAGTTACTACTAACGTTGTT+CGG - chr7_3:22712431-22712450 None:intergenic 30.0%
!! ACTTGTTTAATTTTTCTGGG+TGG + chr7_3:22712447-22712466 Msa1097430:intron 30.0%
TCTCAATGGTTTGATTGTTT+AGG + chr7_3:22712655-22712674 Msa1097430:intron 30.0%
TTCTGTATGCGTTAATTCAA+TGG + chr7_3:22712832-22712851 Msa1097430:intron 30.0%
TCAAACTGAGTAAAGAAACT+AGG - chr7_3:22712957-22712976 None:intergenic 30.0%
TTTCTTTACTCAGTTTGACT+TGG + chr7_3:22712959-22712978 Msa1097430:intron 30.0%
TACTTCCTGATAAACAGATA+TGG + chr7_3:22713133-22713152 Msa1097430:intron 30.0%
ACTCAATAGCATCATTGATA+AGG - chr7_3:22713219-22713238 None:intergenic 30.0%
TATGCTATAATGCAATACTG+TGG + chr7_3:22713252-22713271 Msa1097430:intron 30.0%
! TACTATTAGTCTGATCTTCT+TGG + chr7_3:22713360-22713379 Msa1097430:intron 30.0%
! CAATTATAAAGAGTGTGACA+TGG + chr7_3:22713401-22713420 Msa1097430:CDS 30.0%
! TGTAGAGCTTTTACTACAAT+CGG - chr7_3:22713456-22713475 None:intergenic 30.0%
ATCAAATTACCACACTATTC+GGG - chr7_3:22713510-22713529 None:intergenic 30.0%
GTGGTAATTTGATTGTAGTT+TGG + chr7_3:22713517-22713536 Msa1097430:three_prime_UTR 30.0%
TGCTCCAAATTCAGTTACTA+AGG + chr7_3:22710373-22710392 Msa1097430:CDS 35.0%
GTTACTAAGGTTGTTGGAAT+TGG + chr7_3:22710386-22710405 Msa1097430:CDS 35.0%
GAAAAAGAAGAGCCAGAAAA+TGG + chr7_3:22710408-22710427 Msa1097430:CDS 35.0%
AAGAGCCAGAAAATGGAATA+TGG + chr7_3:22710415-22710434 Msa1097430:CDS 35.0%
! AACTGCCATATTCCATTTTC+TGG - chr7_3:22710423-22710442 None:intergenic 35.0%
GTTGTTATCATCAAAGTGTG+TGG - chr7_3:22710483-22710502 None:intergenic 35.0%
! CTCTGAAAATTGTGTGTATG+AGG + chr7_3:22710586-22710605 Msa1097430:CDS 35.0%
! TATTGATGATTTGTCTACGG+AGG + chr7_3:22710790-22710809 Msa1097430:CDS 35.0%
ACAAAGTTAATCGACTGAGT+TGG + chr7_3:22711003-22711022 Msa1097430:intron 35.0%
AAGTACTTTCTTCACTGCTT+TGG - chr7_3:22711050-22711069 None:intergenic 35.0%
CGATACGAATATGAATTGAG+TGG + chr7_3:22711127-22711146 Msa1097430:intron 35.0%
ATATAATGGCCCAATCAGAT+GGG - chr7_3:22711418-22711437 None:intergenic 35.0%
AATATAATGGCCCAATCAGA+TGG - chr7_3:22711419-22711438 None:intergenic 35.0%
ATCTGATTGGGCCATTATAT+TGG + chr7_3:22711418-22711437 Msa1097430:intron 35.0%
TCTGATTGGGCCATTATATT+GGG + chr7_3:22711419-22711438 Msa1097430:intron 35.0%
! TGGCCTTGATCTAAACATAT+TGG + chr7_3:22711444-22711463 Msa1097430:intron 35.0%
GGCCTTGATCTAAACATATT+GGG + chr7_3:22711445-22711464 Msa1097430:intron 35.0%
AGCCCAATATGTTTAGATCA+AGG - chr7_3:22711450-22711469 None:intergenic 35.0%
TTAATGAACGCAGAATGGAA+AGG + chr7_3:22711633-22711652 Msa1097430:intron 35.0%
AAACTGCATCCTTTGCTAAA+GGG - chr7_3:22711669-22711688 None:intergenic 35.0%
AAAACTGCATCCTTTGCTAA+AGG - chr7_3:22711670-22711689 None:intergenic 35.0%
! AGGATGCAGTTTTTATCGTT+TGG + chr7_3:22711677-22711696 Msa1097430:CDS 35.0%
TATCGTTTGGAAGTGATCAA+TGG + chr7_3:22711690-22711709 Msa1097430:CDS 35.0%
GGCTAAAAACTGAGAAAAGT+AGG + chr7_3:22711889-22711908 Msa1097430:intron 35.0%
AAACTGAGAAAAGTAGGTTG+TGG + chr7_3:22711895-22711914 Msa1097430:intron 35.0%
AAGATAGAGAGGTTAGAGAA+GGG + chr7_3:22711998-22712017 Msa1097430:intron 35.0%
AAGATCAGTGTGTTTAGTCT+TGG + chr7_3:22712051-22712070 Msa1097430:intron 35.0%
!! TGTGTTTAGTCTTGGATGAT+GGG + chr7_3:22712059-22712078 Msa1097430:intron 35.0%
TAGACTGTTTCCATTATCGA+TGG + chr7_3:22712145-22712164 Msa1097430:intron 35.0%
ACAAAATTGGTTACCAGCAA+AGG + chr7_3:22712248-22712267 Msa1097430:intron 35.0%
CAATTATTCCACCCTTAAGA+AGG - chr7_3:22712278-22712297 None:intergenic 35.0%
CTTCTTAAGGGTGGAATAAT+TGG + chr7_3:22712276-22712295 Msa1097430:intron 35.0%
TTAAGGGTGGAATAATTGGA+GGG + chr7_3:22712280-22712299 Msa1097430:intron 35.0%
!! TGTGAGTCACTTGTTATTGA+AGG + chr7_3:22712344-22712363 Msa1097430:intron 35.0%
CAAAATGGTTGAGTTTGGAA+GGG + chr7_3:22712399-22712418 Msa1097430:intron 35.0%
AAAATGGTTGAGTTTGGAAG+GGG + chr7_3:22712400-22712419 Msa1097430:intron 35.0%
!! AATTTTTCTGGGTGGATTCA+AGG + chr7_3:22712455-22712474 Msa1097430:intron 35.0%
ACAGTGTGATTGTGTGTATT+CGG + chr7_3:22712506-22712525 Msa1097430:intron 35.0%
GATGCGGAAAGAAAAAATAG+TGG - chr7_3:22712713-22712732 None:intergenic 35.0%
!!! TTTTTTCTTTCCGCATCTTC+AGG + chr7_3:22712716-22712735 Msa1097430:intron 35.0%
ACCATATATACCTGAAGATG+CGG - chr7_3:22712729-22712748 None:intergenic 35.0%
!!! CTGTGCTGTTTTATCAGTTA+AGG + chr7_3:22712858-22712877 Msa1097430:intron 35.0%
! AGTTTCTATACTCAGGTTGT+TGG + chr7_3:22712982-22713001 Msa1097430:intron 35.0%
TCCTGATAAACAGATATGGA+CGG + chr7_3:22713137-22713156 Msa1097430:intron 35.0%
TCAATGATGCTATTGAGTAC+TGG + chr7_3:22713221-22713240 Msa1097430:intron 35.0%
CACTTTCACTTTCTCTATGT+TGG - chr7_3:22713565-22713584 None:intergenic 35.0%
TTGAAGAGTCTATGTGGTAC+TGG + chr7_3:22710241-22710260 Msa1097430:five_prime_UTR 40.0%
TGAAGAGTCTATGTGGTACT+GGG + chr7_3:22710242-22710261 Msa1097430:five_prime_UTR 40.0%
CTATGTGACAACGAAGTCAA+AGG - chr7_3:22710344-22710363 None:intergenic 40.0%
GTTATCATCAAAGTGTGTGG+TGG - chr7_3:22710480-22710499 None:intergenic 40.0%
ATTACCTTACGACCCACAAA+TGG - chr7_3:22710629-22710648 None:intergenic 40.0%
AATAAACTGCAGATCCTTGC+TGG - chr7_3:22710771-22710790 None:intergenic 40.0%
ACGGAGGATTCATCATTAGT+TGG + chr7_3:22710806-22710825 Msa1097430:CDS 40.0%
CATCATTAGTTGGAGTGATC+TGG + chr7_3:22710816-22710835 Msa1097430:CDS 40.0%
TACTTTCTTCACTGCTTTGG+AGG - chr7_3:22711047-22711066 None:intergenic 40.0%
! ACTTAGAAAGTGTGAAGAGC+AGG + chr7_3:22711095-22711114 Msa1097430:intron 40.0%
! CTTAGAAAGTGTGAAGAGCA+GGG + chr7_3:22711096-22711115 Msa1097430:intron 40.0%
AGCTGTTGAGGTTGTAATCA+GGG + chr7_3:22711255-22711274 Msa1097430:intron 40.0%
TTGGGCCATTATATTGGGTA+TGG + chr7_3:22711424-22711443 Msa1097430:intron 40.0%
CAAGGCCATACCCAATATAA+TGG - chr7_3:22711432-22711451 None:intergenic 40.0%
! AAGCCTTTTCCCTTTAGCAA+AGG + chr7_3:22711657-22711676 Msa1097430:CDS 40.0%
CATCCTTTGCTAAAGGGAAA+AGG - chr7_3:22711663-22711682 None:intergenic 40.0%
TTAACATGACGAGAGTAGCA+TGG + chr7_3:22711760-22711779 Msa1097430:intron 40.0%
!! TTTGCTCTGAAACTTGTGCT+TGG + chr7_3:22711797-22711816 Msa1097430:intron 40.0%
GAAGATAGAGAGGTTAGAGA+AGG + chr7_3:22711997-22712016 Msa1097430:intron 40.0%
!! GTGTGTTTAGTCTTGGATGA+TGG + chr7_3:22712058-22712077 Msa1097430:intron 40.0%
!! GTGTTTAGTCTTGGATGATG+GGG + chr7_3:22712060-22712079 Msa1097430:intron 40.0%
! TGGGGAGATATACGCTATTT+TGG + chr7_3:22712078-22712097 Msa1097430:intron 40.0%
ACTTTGACGTCCATCGATAA+TGG - chr7_3:22712158-22712177 None:intergenic 40.0%
ATTATCGATGGACGTCAAAG+TGG + chr7_3:22712157-22712176 Msa1097430:intron 40.0%
GCATGTGATCAGTCATTTGA+AGG + chr7_3:22712200-22712219 Msa1097430:intron 40.0%
TGTGATCAGTCATTTGAAGG+TGG + chr7_3:22712203-22712222 Msa1097430:intron 40.0%
CTTAAGGGTGGAATAATTGG+AGG + chr7_3:22712279-22712298 Msa1097430:intron 40.0%
TAAGGGTGGAATAATTGGAG+GGG + chr7_3:22712281-22712300 Msa1097430:intron 40.0%
GCAAAATGGTTGAGTTTGGA+AGG + chr7_3:22712398-22712417 Msa1097430:intron 40.0%
TTGTGTGTATTCGGTCCATT+TGG + chr7_3:22712515-22712534 Msa1097430:intron 40.0%
! TTGATTCCTAGCTCTCCAAA+TGG - chr7_3:22712533-22712552 None:intergenic 40.0%
AACAGACTAAAATGCTGCTG+TGG + chr7_3:22712596-22712615 Msa1097430:intron 40.0%
TCCGCATCTTCAGGTATATA+TGG + chr7_3:22712725-22712744 Msa1097430:intron 40.0%
GCATCTTCAGGTATATATGG+TGG + chr7_3:22712728-22712747 Msa1097430:intron 40.0%
! GTATATATGGTGGCTGTTTC+TGG + chr7_3:22712738-22712757 Msa1097430:intron 40.0%
! ATCAGTGTTCGGTTTAAGAC+AGG + chr7_3:22712791-22712810 Msa1097430:intron 40.0%
TCAGAGGGAAAATTGCTTGA+AGG - chr7_3:22712929-22712948 None:intergenic 40.0%
AGAAACTAGGCTACATCAGA+GGG - chr7_3:22712944-22712963 None:intergenic 40.0%
AAGAAACTAGGCTACATCAG+AGG - chr7_3:22712945-22712964 None:intergenic 40.0%
GACTTGGAGTTTCTATACTC+AGG + chr7_3:22712975-22712994 Msa1097430:intron 40.0%
AAGAAACACATTCAAGCCCA+AGG - chr7_3:22713061-22713080 None:intergenic 40.0%
CCTGATAAACAGATATGGAC+GGG + chr7_3:22713138-22713157 Msa1097430:intron 40.0%
TTGAACCTGCAATCAAACCA+GGG + chr7_3:22713167-22713186 Msa1097430:CDS 40.0%
CTTGGAAGCAATTTACATGC+AGG + chr7_3:22713378-22713397 Msa1097430:intron 40.0%
TCTTCAACGATTTCCTCAGT+TGG + chr7_3:22713426-22713445 Msa1097430:CDS 40.0%
AGCTCTACATTATTTCCGGA+TGG + chr7_3:22713467-22713486 Msa1097430:three_prime_UTR 40.0%
GCTCTACATTATTTCCGGAT+GGG + chr7_3:22713468-22713487 Msa1097430:three_prime_UTR 40.0%
CACACTATTCGGGAGAAATA+TGG - chr7_3:22713500-22713519 None:intergenic 40.0%
CATATTTCTCCCGAATAGTG+TGG + chr7_3:22713498-22713517 Msa1097430:three_prime_UTR 40.0%
GGGAATCAATGCACATGATG+TGG + chr7_3:22710544-22710563 Msa1097430:CDS 45.0%
TGTCTTTCCACGTCCATTTG+TGG + chr7_3:22710613-22710632 Msa1097430:CDS 45.0%
GTCTTTCCACGTCCATTTGT+GGG + chr7_3:22710614-22710633 Msa1097430:CDS 45.0%
!! GTTCACTGATTCTACCAGCA+AGG + chr7_3:22710754-22710773 Msa1097430:CDS 45.0%
GTTGGAGTGATCTGGCATTT+AGG + chr7_3:22710824-22710843 Msa1097430:CDS 45.0%
GAGCTGTTGAGGTTGTAATC+AGG + chr7_3:22711254-22711273 Msa1097430:intron 45.0%
TGTTGAGGTTGTAATCAGGG+CGG + chr7_3:22711258-22711277 Msa1097430:intron 45.0%
GCTTGGCTATTGCTCTTATC+TGG + chr7_3:22711321-22711340 Msa1097430:intron 45.0%
AAGCTCGATCCCATCTGATT+GGG + chr7_3:22711406-22711425 Msa1097430:intron 45.0%
ACAATATGACGCGTTCTCGT+TGG - chr7_3:22711482-22711501 None:intergenic 45.0%
ATCTAAGTATGGGCTTGTCG+AGG + chr7_3:22711932-22711951 Msa1097430:intron 45.0%
TCTAAGTATGGGCTTGTCGA+GGG + chr7_3:22711933-22711952 Msa1097430:intron 45.0%
TTGTCGAGGGTTAAATCGGA+AGG + chr7_3:22711946-22711965 Msa1097430:intron 45.0%
TGTCGAGGGTTAAATCGGAA+GGG + chr7_3:22711947-22711966 Msa1097430:intron 45.0%
AGGGTTAAATCGGAAGGGTT+GGG + chr7_3:22711952-22711971 Msa1097430:intron 45.0%
CTCTCTATCTTCTTCCACCA+CGG - chr7_3:22711989-22712008 None:intergenic 45.0%
!! AGGTTAGAGAAGGGTGTTGA+GGG + chr7_3:22712007-22712026 Msa1097430:intron 45.0%
!!! TGAAGGTGGTTTTGTTCGCT+TGG + chr7_3:22712217-22712236 Msa1097430:intron 45.0%
TTAAGAAGGCTGTCCTTTGC+TGG - chr7_3:22712264-22712283 None:intergenic 45.0%
AGCAAAGGACAGCCTTCTTA+AGG + chr7_3:22712263-22712282 Msa1097430:intron 45.0%
GCAAAGGACAGCCTTCTTAA+GGG + chr7_3:22712264-22712283 Msa1097430:intron 45.0%
GACACTCATTTGTGTAGTGC+AGG + chr7_3:22712303-22712322 Msa1097430:intron 45.0%
!! TTTTCTGGGTGGATTCAAGG+AGG + chr7_3:22712458-22712477 Msa1097430:intron 45.0%
TAGTGGTGTTCCTGAACACT+CGG - chr7_3:22712696-22712715 None:intergenic 45.0%
! GGTTTAAGACAGGATGTGCA+AGG + chr7_3:22712801-22712820 Msa1097430:intron 45.0%
CCCGTCCATATCTGTTTATC+AGG - chr7_3:22713141-22713160 None:intergenic 45.0%
GTTGAACCTGCAATCAAACC+AGG + chr7_3:22713166-22713185 Msa1097430:CDS 45.0%
TGAACCTGCAATCAAACCAG+GGG + chr7_3:22713168-22713187 Msa1097430:CDS 45.0%
!! TACAATCGGTTTGCCAACTG+AGG - chr7_3:22713442-22713461 None:intergenic 45.0%
AAATATGGAACACGCCCATC+CGG - chr7_3:22713485-22713504 None:intergenic 45.0%
! CTATGTGGTACTGGGTGAAG+TGG + chr7_3:22710250-22710269 Msa1097430:five_prime_UTR 50.0%
TTACGACCCACAAATGGACG+TGG - chr7_3:22710623-22710642 None:intergenic 50.0%
ACGTCCATTTGTGGGTCGTA+AGG + chr7_3:22710622-22710641 Msa1097430:CDS 50.0%
TGGAGCGTATCACAACTCAG+AGG - chr7_3:22711192-22711211 None:intergenic 50.0%
TCCTGCTCTTTGAGCTGTTG+AGG + chr7_3:22711243-22711262 Msa1097430:intron 50.0%
ACCTCAACAGCTCAAAGAGC+AGG - chr7_3:22711247-22711266 None:intergenic 50.0%
CAATCAGATGGGATCGAGCT+TGG - chr7_3:22711407-22711426 None:intergenic 50.0%
CAAGCTCGATCCCATCTGAT+TGG + chr7_3:22711405-22711424 Msa1097430:intron 50.0%
GGGCTTGTCGAGGGTTAAAT+CGG + chr7_3:22711942-22711961 Msa1097430:intron 50.0%
GAGGGTTAAATCGGAAGGGT+TGG + chr7_3:22711951-22711970 Msa1097430:intron 50.0%
GTTGGGTGTTTGATTCACCG+TGG + chr7_3:22711969-22711988 Msa1097430:intron 50.0%
! CGTGGTGGAAGAAGATAGAG+AGG + chr7_3:22711987-22712006 Msa1097430:intron 50.0%
!! GAGGTTAGAGAAGGGTGTTG+AGG + chr7_3:22712006-22712025 Msa1097430:intron 50.0%
!! GGTTAGAGAAGGGTGTTGAG+GGG + chr7_3:22712008-22712027 Msa1097430:intron 50.0%
!! GTTAGAGAAGGGTGTTGAGG+GGG + chr7_3:22712009-22712028 Msa1097430:intron 50.0%
!!! CGCTATTTTGGTCGAAACCG+TGG + chr7_3:22712090-22712109 Msa1097430:intron 50.0%
ACGATACACCCAGTCATCCA+CGG - chr7_3:22712110-22712129 None:intergenic 50.0%
AAGGACAGCCTTCTTAAGGG+TGG + chr7_3:22712267-22712286 Msa1097430:intron 50.0%
TTCGGTCCATTTGGAGAGCT+AGG + chr7_3:22712524-22712543 Msa1097430:intron 50.0%
TGTGTAATGGCCGAGTGTTC+AGG + chr7_3:22712683-22712702 Msa1097430:intron 50.0%
TTCCCATTCGGACACTCCTT+GGG + chr7_3:22713042-22713061 Msa1097430:intron 50.0%
CAAACCAGGGGATGCAACTT+TGG + chr7_3:22713180-22713199 Msa1097430:CDS 50.0%
CATACCAAAGTTGCATCCCC+TGG - chr7_3:22713187-22713206 None:intergenic 50.0%
!! ACTGCTTTGGAGGAGCAGGA+GGG - chr7_3:22711037-22711056 None:intergenic 55.0%
!! CTTCACTGCTTTGGAGGAGC+AGG - chr7_3:22711041-22711060 None:intergenic 55.0%
CTGTTCCCCGATATCTGCCA+GGG + chr7_3:22711292-22711311 Msa1097430:intron 55.0%
CACAACCCTGGCAGATATCG+GGG - chr7_3:22711300-22711319 None:intergenic 55.0%
GCACAACCCTGGCAGATATC+GGG - chr7_3:22711301-22711320 None:intergenic 55.0%
CGCACAACCCTGGCAGATAT+CGG - chr7_3:22711302-22711321 None:intergenic 55.0%
AATAGCCAAGCGCACAACCC+TGG - chr7_3:22711312-22711331 None:intergenic 55.0%
GGGTGTTTGATTCACCGTGG+TGG + chr7_3:22711972-22711991 Msa1097430:intron 55.0%
TGGTCGAAACCGTGGATGAC+TGG + chr7_3:22712098-22712117 Msa1097430:intron 55.0%
GGTCGAAACCGTGGATGACT+GGG + chr7_3:22712099-22712118 Msa1097430:intron 55.0%
GTTCCCATTCGGACACTCCT+TGG + chr7_3:22713041-22713060 Msa1097430:intron 55.0%
!! AGCCCAAGGAGTGTCCGAAT+GGG - chr7_3:22713047-22713066 None:intergenic 55.0%
!! AAGCCCAAGGAGTGTCCGAA+TGG - chr7_3:22713048-22713067 None:intergenic 55.0%
! GCATCCCCTGGTTTGATTGC+AGG - chr7_3:22713175-22713194 None:intergenic 55.0%
!! CACTGCTTTGGAGGAGCAGG+AGG - chr7_3:22711038-22711057 None:intergenic 60.0%
GCTGTTCCCCGATATCTGCC+AGG + chr7_3:22711291-22711310 Msa1097430:intron 60.0%
ATCTGCCAGGGTTGTGCGCT+TGG + chr7_3:22711304-22711323 Msa1097430:intron 60.0%
GATGGGATCGAGCTTGGCGT+GGG - chr7_3:22711401-22711420 None:intergenic 60.0%
AGATGGGATCGAGCTTGGCG+TGG - chr7_3:22711402-22711421 None:intergenic 60.0%
! GGTGTTGAGGGGGCAAGTCA+GGG + chr7_3:22712019-22712038 Msa1097430:intron 60.0%
TTGAGGGGGCAAGTCAGGGT+TGG + chr7_3:22712023-22712042 Msa1097430:intron 60.0%
!! GGGTGTTGAGGGGGCAAGTC+AGG + chr7_3:22712018-22712037 Msa1097430:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 22710188 22713671 22710188 ID=Msa1097430;Name=Msa1097430
chr7_3 mRNA 22710188 22713671 22710188 ID=Msa1097430-mRNA-1;Parent=Msa1097430;Name=Msa1097430-mRNA-1;_AED=0.44;_eAED=0.44;_QI=93|1|1|1|1|1|5|209|224
chr7_3 exon 22710188 22710643 22710188 ID=Msa1097430-mRNA-1:exon:5029;Parent=Msa1097430-mRNA-1
chr7_3 exon 22710731 22710845 22710731 ID=Msa1097430-mRNA-1:exon:5030;Parent=Msa1097430-mRNA-1
chr7_3 exon 22711646 22711727 22711646 ID=Msa1097430-mRNA-1:exon:5031;Parent=Msa1097430-mRNA-1
chr7_3 exon 22713150 22713201 22713150 ID=Msa1097430-mRNA-1:exon:5032;Parent=Msa1097430-mRNA-1
chr7_3 exon 22713400 22713671 22713400 ID=Msa1097430-mRNA-1:exon:5033;Parent=Msa1097430-mRNA-1
chr7_3 five_prime_UTR 22710188 22710280 22710188 ID=Msa1097430-mRNA-1:five_prime_utr;Parent=Msa1097430-mRNA-1
chr7_3 CDS 22710281 22710643 22710281 ID=Msa1097430-mRNA-1:cds;Parent=Msa1097430-mRNA-1
chr7_3 CDS 22710731 22710845 22710731 ID=Msa1097430-mRNA-1:cds;Parent=Msa1097430-mRNA-1
chr7_3 CDS 22711646 22711727 22711646 ID=Msa1097430-mRNA-1:cds;Parent=Msa1097430-mRNA-1
chr7_3 CDS 22713150 22713201 22713150 ID=Msa1097430-mRNA-1:cds;Parent=Msa1097430-mRNA-1
chr7_3 CDS 22713400 22713462 22713400 ID=Msa1097430-mRNA-1:cds;Parent=Msa1097430-mRNA-1
chr7_3 three_prime_UTR 22713463 22713671 22713463 ID=Msa1097430-mRNA-1:three_prime_utr;Parent=Msa1097430-mRNA-1
Gene Sequence

>Msa1097430

ATGTTTATGGTGTGTAGTTCTAGTAGCAGCACACAAGTGCTAATATTGAACTCAGCGTCACCTTTGACTTCGTTGTCACATAGAAGAATCTATGCTCCAAATTCAGTTACTAAGGTTGTTGGAATTGGAAAAAGAAGAGCCAGAAAATGGAATATGGCAGTTAATAACAGTGGTGAAAATAATTTAGTTACAACAACCACCACACACTTTGATGATAACAACGTTGTAGATTCAGCTTCAACAGTAGTGAGAAATTTCTATGAGGGAATCAATGCACATGATGTGGATTCTGTACAATATCTTATCTCTGAAAATTGTGTGTATGAGGACTTTGTCTTTCCACGTCCATTTGTGGGTCGTAAGGAAATCATAGAGTTCTTCAAAAAGTTCACTGATTCTACCAGCAAGGATCTGCAGTTTATTATTGATGATTTGTCTACGGAGGATTCATCATTAGTTGGAGTGATCTGGCATTTAGAATGGAAAGGAAAGCCTTTTCCCTTTAGCAAAGGATGCAGTTTTTATCGTTTGGAAGTGATCAATGGCAAGAGACAGATCACATATGGACGGGACTGTGTTGAACCTGCAATCAAACCAGGGGATGCAACTTTGGCAATTATAAAGAGTGTGACATGGCTTCTTCAACGATTTCCTCAGTTGGCAAACCGATTGTAG

Protein sequence

>Msa1097430

MFMVCSSSSSTQVLILNSASPLTSLSHRRIYAPNSVTKVVGIGKRRARKWNMAVNNSGENNLVTTTTTHFDDNNVVDSASTVVRNFYEGINAHDVDSVQYLISENCVYEDFVFPRPFVGRKEIIEFFKKFTDSTSKDLQFIIDDLSTEDSSLVGVIWHLEWKGKPFPFSKGCSFYRLEVINGKRQITYGRDCVEPAIKPGDATLAIIKSVTWLLQRFPQLANRL*