AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0316940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0316940 MtrunA17_Chr2g0289751 84.507 355 2 1 1 302 1 355 0.0 533
Msa0316940 MtrunA17_Chr2g0289761 86.139 202 21 4 105 300 6 206 2.58e-84 258
Msa0316940 MtrunA17_Chr2g0289781 82.143 56 10 0 1 56 1 56 6.11e-28 105
Msa0316940 MtrunA17_Chr2g0289771 92.500 40 3 0 55 94 3 42 1.40e-19 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0316940 AT4G12610.1 62.040 353 75 5 3 299 5 354 1.14e-121 360
Msa0316940 AT4G12610.2 62.040 353 75 5 3 299 5 354 3.51e-121 362

Find 105 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGTTCATAGTTTCGGTCTT+TGG 0.215502 2_4:+14227365 None:intergenic
AACAGGTCAGTCCCAGTTTC+AGG 0.216643 2_4:-14226077 Msa0316940:CDS
CTTCAAGATGACCCTGAAAC+TGG 0.279218 2_4:+14226065 None:intergenic
TTGCCATTCCTGCTGGTTCC+TGG 0.279671 2_4:-14225991 Msa0316940:intron
AACGAAGGAATTATCGTTCT+AGG 0.299157 2_4:+14227320 None:intergenic
AGTTCATAGTTTCGGTCTTT+GGG 0.329843 2_4:+14227366 None:intergenic
TCAGGAGGAGCGGGAACTTC+GGG 0.344959 2_4:+14225099 None:intergenic
ATATAAGCAATTGACTTTAG+AGG 0.347029 2_4:-14225832 Msa0316940:CDS
CGTTCTAGGGTTTCGTGATT+GGG 0.348781 2_4:+14227334 None:intergenic
AGATTCAACAACAACGATAA+TGG 0.358801 2_4:-14227266 Msa0316940:exon
CAGTTTCAGGGTCATCTTGA+AGG 0.369085 2_4:-14226064 Msa0316940:CDS
ATGATGAAAGCAGCGAATAA+TGG 0.370879 2_4:-14225753 Msa0316940:CDS
TTTCGCTCAGTTCATAGTTT+CGG 0.375407 2_4:+14227358 None:intergenic
TCCCGAGGAAAGGGAAGATT+TGG 0.382010 2_4:-14225124 Msa0316940:CDS
CAAGAACAGGCCTTGGCTCT+TGG 0.386684 2_4:-14226107 Msa0316940:CDS
GCGAGATTGAGATTTATGAT+AGG 0.392415 2_4:+14227294 None:intergenic
TTCACCGCATCCGCTGCAAC+TGG 0.395002 2_4:+14227228 None:intergenic
TCGTTCTAGGGTTTCGTGAT+TGG 0.397189 2_4:+14227333 None:intergenic
AGCCAAATCTTCCCTTTCCT+CGG 0.399905 2_4:+14225122 None:intergenic
TGATGAAAGCAGCGAATAAT+GGG 0.401428 2_4:-14225752 Msa0316940:CDS
ATGAAGACGAGGAAGTAGAT+AGG 0.407924 2_4:-14225605 Msa0316940:CDS
GAAGGTCCTTCCTCTGATAA+AGG 0.417828 2_4:-14225636 Msa0316940:CDS
GAGTTTGTTGCCATTCCTGC+TGG 0.421742 2_4:-14225998 Msa0316940:CDS
TGGCTCTTGGAGGATGAAAC+AGG 0.428964 2_4:-14226094 Msa0316940:CDS
ATCTGTTACAGGTGATGATT+GGG 0.436771 2_4:-14225193 Msa0316940:intron
CATAGGAGAAATACAAGAAC+AGG 0.437108 2_4:-14226120 Msa0316940:intron
AATAATGGGCCTGCTGCATT+TGG 0.443379 2_4:-14225738 Msa0316940:CDS
AAGAGCTGAAGAAGCTGCTT+GGG 0.443845 2_4:-14223161 Msa0316940:CDS
AAGAAGCTGCTTGGGCGAGC+TGG 0.446840 2_4:-14223153 Msa0316940:CDS
CTCAGGAGGAGCGGGAACTT+CGG 0.456323 2_4:+14225098 None:intergenic
TCATCATGGTCCCCTCCCCT+TGG 0.460877 2_4:+14225534 None:intergenic
AGCAATGCAGGTGGTGGGAG+AGG 0.462777 2_4:-14225687 Msa0316940:CDS
ATGAAGAAGGTCCAAGGGGA+GGG 0.463039 2_4:-14225545 Msa0316940:CDS
GCCAAATCTTCCCTTTCCTC+GGG 0.465124 2_4:+14225123 None:intergenic
TAAACAATTGAACATTGTGT+TGG 0.467473 2_4:-14227425 None:intergenic
CATCTGTTACAGGTGATGAT+TGG 0.467483 2_4:-14225194 Msa0316940:intron
AGGATGAAGATAATGAAGAA+GGG 0.474665 2_4:-14223206 Msa0316940:CDS
AAAGAGCTGAAGAAGCTGCT+TGG 0.476403 2_4:-14223162 Msa0316940:CDS
CGCTCCTCCTGAGATCAAAC+AGG 0.477876 2_4:-14225088 Msa0316940:intron
GAGGATGAAGATAATGAAGA+AGG 0.483404 2_4:-14223207 Msa0316940:CDS
CCTGCTGCATTTGGTGAACA+TGG 0.486306 2_4:-14225729 Msa0316940:CDS
AAGGAGAGCAATGCAGGTGG+TGG 0.486588 2_4:-14225693 Msa0316940:CDS
GCAGGATGATGATGAGGAGG+AGG 0.487719 2_4:-14223229 Msa0316940:intron
ACGAAGGAATTATCGTTCTA+GGG 0.491771 2_4:+14227321 None:intergenic
AAACTAACCTGTTTGATCTC+AGG 0.491896 2_4:+14225081 None:intergenic
AATCGTTTGCTCAGTTTCTG+AGG 0.493608 2_4:+14227389 None:intergenic
AGAAATACAAGAACAGGCCT+TGG 0.494144 2_4:-14226114 Msa0316940:CDS
GGATGATTATGATGTTGAAA+AGG 0.501121 2_4:-14225511 Msa0316940:CDS
AAGCTGCTTGGGCGAGCTGG+TGG 0.502298 2_4:-14223150 Msa0316940:CDS
GAGAAGTGAAAAGAGAAAGA+AGG 0.505093 2_4:+14223070 None:intergenic
GATGACAAGGAGAGCAATGC+AGG 0.506669 2_4:-14225699 Msa0316940:CDS
CCTGCTAATGAAGGAAAAGA+AGG 0.506868 2_4:-14226020 Msa0316940:CDS
GAACAGGCCTTGGCTCTTGG+AGG 0.508740 2_4:-14226104 Msa0316940:CDS
AAATCCAGTTGCAGCGGATG+CGG 0.513719 2_4:-14227232 Msa0316940:CDS
TGAAGAAGGTCCAAGGGGAG+GGG 0.516336 2_4:-14225544 Msa0316940:CDS
CTGCTGATGGATATCAAAGA+TGG 0.520458 2_4:-14225776 Msa0316940:CDS
TCCTCTCCTTTATCAGAGGA+AGG 0.525124 2_4:+14225630 None:intergenic
TGGTAATGATCCCGAGGAAA+GGG 0.530233 2_4:-14225133 Msa0316940:CDS
GGATGATGATGAGGAGGAGG+AGG 0.531210 2_4:-14223226 Msa0316940:CDS
ACGAGTGAGCAACGCGCCAC+AGG 0.532698 2_4:+14227114 None:intergenic
TACGTATTACCTGCTAATGA+AGG 0.543698 2_4:-14226029 Msa0316940:CDS
AGCGGATGCGGTGAAACCAC+TGG 0.546550 2_4:-14227220 Msa0316940:CDS
GGATGAAGATAATGAAGAAG+GGG 0.547831 2_4:-14223205 Msa0316940:CDS
GATGATTATGATGTTGAAAA+GGG 0.548380 2_4:-14225510 Msa0316940:intron
CATCATAATCATCCTCATCA+TGG 0.548887 2_4:+14225520 None:intergenic
TTCAAGATGACCCTGAAACT+GGG 0.549424 2_4:+14226066 None:intergenic
CCATGTTCACCAAATGCAGC+AGG 0.549450 2_4:+14225729 None:intergenic
ACCTTCTTCATCATCGTCAA+AGG 0.549484 2_4:+14225557 None:intergenic
TGTTTGATCTCAGGAGGAGC+GGG 0.549612 2_4:+14225090 None:intergenic
GATGAAGAAGGTCCAAGGGG+AGG 0.549756 2_4:-14225546 Msa0316940:CDS
ATACCAGGAACCAGCAGGAA+TGG 0.553152 2_4:+14225988 None:intergenic
CGCTCTAAATGCTCCACCTG+TGG 0.557360 2_4:-14227130 Msa0316940:CDS
CGATGATGAAGAAGGTCCAA+GGG 0.563992 2_4:-14225550 Msa0316940:CDS
ACGATGATGAAGAAGGTCCA+AGG 0.566290 2_4:-14225551 Msa0316940:CDS
ATCTTCCTCTCCTTTATCAG+AGG 0.566467 2_4:+14225626 None:intergenic
ATCGTTTGCTCAGTTTCTGA+GGG 0.566750 2_4:+14227390 None:intergenic
GGTGAAACCACTGGTCTCTA+CGG 0.571121 2_4:-14227211 Msa0316940:CDS
TTGGTAATGATCCCGAGGAA+AGG 0.572119 2_4:-14225134 Msa0316940:CDS
ACCTTTGACGATGATGAAGA+AGG 0.580258 2_4:-14225558 Msa0316940:CDS
AGTGAGCAACGCGCCACAGG+TGG 0.584024 2_4:+14227117 None:intergenic
AGGAGAGGAAGATGAAGACG+AGG 0.585432 2_4:-14225616 Msa0316940:CDS
ACAGGTCAGTCCCAGTTTCA+GGG 0.586252 2_4:-14226076 Msa0316940:CDS
ATTTATGATAGGATTAACGA+AGG 0.597557 2_4:+14227305 None:intergenic
AAGGGGAGGGGACCATGATG+AGG 0.598023 2_4:-14225532 Msa0316940:CDS
CAAACATACCAGGAACCAGC+AGG 0.599426 2_4:+14225983 None:intergenic
ACTGATGATGATGAAGCTGT+TGG 0.602786 2_4:-14225153 Msa0316940:CDS
AGGAGAGCAATGCAGGTGGT+GGG 0.603756 2_4:-14225692 Msa0316940:CDS
TGGTGGTCTAAGTGAATCTG+AGG 0.608621 2_4:-14223133 Msa0316940:CDS
CTGTTTGATCTCAGGAGGAG+CGG 0.610793 2_4:+14225089 None:intergenic
ACATGGGAAGTTAGATGACA+AGG 0.619799 2_4:-14225712 Msa0316940:CDS
GTTTCATCCTCCAAGAGCCA+AGG 0.620968 2_4:+14226097 None:intergenic
GGGGAGGTCTGAGTAAATCT+GGG 0.621871 2_4:-14223185 Msa0316940:CDS
GATGAAGATAATGAAGAAGG+GGG 0.625653 2_4:-14223204 Msa0316940:CDS
ATAATTGCAGGATGATGATG+AGG 0.627282 2_4:-14223235 Msa0316940:intron
TCCTTCCTCTGATAAAGGAG+AGG 0.629940 2_4:-14225631 Msa0316940:CDS
CAATTGAAATCCAGTTGCAG+CGG 0.643581 2_4:-14227238 Msa0316940:CDS
ATTGCAGGATGATGATGAGG+AGG 0.643798 2_4:-14223232 Msa0316940:intron
ATTGCTTCCGTAGAGACCAG+TGG 0.644140 2_4:+14227204 None:intergenic
CTAACCTGTTTGATCTCAGG+AGG 0.644687 2_4:+14225084 None:intergenic
ACTGGTGATGATGAAGATGA+AGG 0.647424 2_4:-14225654 Msa0316940:CDS
GACAAGGAGAGCAATGCAGG+TGG 0.665146 2_4:-14225696 Msa0316940:CDS
CTGCTGCATTTGGTGAACAT+GGG 0.666508 2_4:-14225728 Msa0316940:CDS
AGCTGTTGGTAATGATCCCG+AGG 0.674384 2_4:-14225139 Msa0316940:CDS
CCCCTGTGGCAAAACCATGG+CGG 0.698393 2_4:-14227158 Msa0316940:CDS
GATGATGAAGAAGGTCCAAG+GGG 0.719851 2_4:-14225549 Msa0316940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTCAATTTTTTGAATT+AGG - chr2_4:14223429-14223448 Msa0316940:intron 10.0%
!! AAAATAATATAAAACAAACA+AGG + chr2_4:14225027-14225046 None:intergenic 10.0%
!! TAAAGAATAATTTCTTAATT+TGG + chr2_4:14226118-14226137 None:intergenic 10.0%
!! TTTATAAAACTTACTATTTA+AGG - chr2_4:14226183-14226202 Msa0316940:intron 10.0%
!!! TTTATTTCTTTTTTGAAAAA+CGG + chr2_4:14226436-14226455 None:intergenic 10.0%
!! AATGAAATAATTCTTATCAT+TGG + chr2_4:14223521-14223540 None:intergenic 15.0%
!! AATGATAAGAATTATTTCAT+TGG - chr2_4:14223520-14223539 Msa0316940:intron 15.0%
!!! CAATTCTTTTATGTATATAT+AGG + chr2_4:14224136-14224155 None:intergenic 15.0%
!!! TCAAAGGTATTTTTTTTATT+CGG + chr2_4:14224930-14224949 None:intergenic 15.0%
!!! AAATGTTTTAGATACTTTAT+TGG + chr2_4:14225740-14225759 None:intergenic 15.0%
!! ATAAAAGGAAAAAAATATCA+GGG + chr2_4:14226037-14226056 None:intergenic 15.0%
!! ATATGATACAAAACAAATAT+GGG + chr2_4:14226236-14226255 None:intergenic 15.0%
!! GAAGAAAAAAACAAAAAAAA+GGG + chr2_4:14226513-14226532 None:intergenic 15.0%
!!! GTATTTTATAGATGAAAAAA+GGG + chr2_4:14227006-14227025 None:intergenic 15.0%
!!! TGTATTTTATAGATGAAAAA+AGG + chr2_4:14227007-14227026 None:intergenic 15.0%
!! ATCCTTTATATTTATATCTT+TGG - chr2_4:14227135-14227154 Msa0316940:CDS 15.0%
!! TCCTTTATATTTATATCTTT+GGG - chr2_4:14227136-14227155 Msa0316940:CDS 15.0%
!!! TTTTGATGATTTTTTGTTAC+AGG - chr2_4:14223471-14223490 Msa0316940:intron 20.0%
!! ATAAGAATTATTTCATTGGA+AGG - chr2_4:14223524-14223543 Msa0316940:intron 20.0%
!! TTAAAGTTGTACCTAAAAAA+AGG + chr2_4:14224636-14224655 None:intergenic 20.0%
!! AAAGGTAATTTAATTGTTAG+AGG - chr2_4:14225584-14225603 Msa0316940:CDS 20.0%
!! CATAAAAGGAAAAAAATATC+AGG + chr2_4:14226038-14226057 None:intergenic 20.0%
!! CATATGATACAAAACAAATA+TGG + chr2_4:14226237-14226256 None:intergenic 20.0%
!! GGAAGAAAAAAACAAAAAAA+AGG + chr2_4:14226514-14226533 None:intergenic 20.0%
!! TAGACTTTGTATTTGTATTT+GGG + chr2_4:14226784-14226803 None:intergenic 20.0%
!!! GAACAAAACTATTTTTTGTT+AGG + chr2_4:14226927-14226946 None:intergenic 20.0%
!!! TTTTGTTCATCTGTTTTATA+AGG - chr2_4:14226939-14226958 Msa0316940:intron 20.0%
!!! TTTGTTCATCTGTTTTATAA+GGG - chr2_4:14226940-14226959 Msa0316940:intron 20.0%
!! CCTTTATATTTATATCTTTG+GGG - chr2_4:14227137-14227156 Msa0316940:CDS 20.0%
!! TGTACATATCTAATATAACA+TGG - chr2_4:14227163-14227182 Msa0316940:CDS 20.0%
!!! AATTCCATATTTAGTTTCTT+TGG - chr2_4:14227199-14227218 Msa0316940:CDS 20.0%
!! ATTAAAAGAGTTACTTAACA+AGG + chr2_4:14227244-14227263 None:intergenic 20.0%
! ATTTATGATAGGATTAACGA+AGG + chr2_4:14223198-14223217 None:intergenic 25.0%
!!! CTTTTCTTCTTTGAAAAATC+AGG + chr2_4:14223565-14223584 None:intergenic 25.0%
!!! AGAAAAGTGCTGAAAATAAA+TGG - chr2_4:14223578-14223597 Msa0316940:intron 25.0%
! GTAAGCATTAAATTTCAAAG+AGG - chr2_4:14223957-14223976 Msa0316940:intron 25.0%
!! TGTTTAATTGATGATTGTTG+TGG - chr2_4:14224239-14224258 Msa0316940:intron 25.0%
!!! TTTTTTGTTCATGTGTGATT+TGG - chr2_4:14224347-14224366 Msa0316940:intron 25.0%
!!! TTTTAGGTACAACTTTAACA+AGG - chr2_4:14224638-14224657 Msa0316940:intron 25.0%
!! ATATAAGCAATTGACTTTAG+AGG - chr2_4:14224668-14224687 Msa0316940:intron 25.0%
! GATGATTATGATGTTGAAAA+GGG - chr2_4:14224990-14225009 Msa0316940:intron 25.0%
!! TTTTTATGAATCCATGTTGA+AGG - chr2_4:14225043-14225062 Msa0316940:intron 25.0%
!! TAAATTGATAACCTTCAACA+TGG + chr2_4:14225057-14225076 None:intergenic 25.0%
!!! TGTAGCGAACAATTATTTTA+CGG - chr2_4:14225093-14225112 Msa0316940:CDS 25.0%
! ATCTCAAGTAAAAGAATTTG+TGG + chr2_4:14225450-14225469 None:intergenic 25.0%
! TAGTTAAATCCTTCTTATGA+AGG + chr2_4:14225560-14225579 None:intergenic 25.0%
! GAAGGATTTAACTAAATGAA+AGG - chr2_4:14225566-14225585 Msa0316940:CDS 25.0%
! GATTCTTAGAAATTGTGATT+GGG + chr2_4:14225864-14225883 None:intergenic 25.0%
! TAAGAAAACTAACTGTATCA+AGG + chr2_4:14225979-14225998 None:intergenic 25.0%
!! ATATACAAGTTGGACATAAA+AGG + chr2_4:14226052-14226071 None:intergenic 25.0%
! TCCAACTTGTATATATTTGT+TGG - chr2_4:14226058-14226077 Msa0316940:CDS 25.0%
! TCCAACAAATATATACAAGT+TGG + chr2_4:14226062-14226081 None:intergenic 25.0%
! AATTTGTGTATTCAATGCAT+TGG + chr2_4:14226163-14226182 None:intergenic 25.0%
! ACTAAAAATCCAAGTTAACT+TGG - chr2_4:14226362-14226381 Msa0316940:intron 25.0%
! AAAAACGAAAATGAAGTAGA+AGG + chr2_4:14226555-14226574 None:intergenic 25.0%
!! AATAAGAACTTATTGATAGC+AGG + chr2_4:14226597-14226616 None:intergenic 25.0%
! GTAGACTTTGTATTTGTATT+TGG + chr2_4:14226785-14226804 None:intergenic 25.0%
! AAAATAGAGGAGAAAATTTC+AGG - chr2_4:14226837-14226856 Msa0316940:intron 25.0%
!!! AACTATTTTTTGTTAGGTCA+AGG + chr2_4:14226921-14226940 None:intergenic 25.0%
!! TTGTTCATCTGTTTTATAAG+GGG - chr2_4:14226941-14226960 Msa0316940:intron 25.0%
! CCCCAAAGATATAAATATAA+AGG + chr2_4:14227140-14227159 None:intergenic 25.0%
! ATATCTAATATAACATGGAG+TGG - chr2_4:14227168-14227187 Msa0316940:CDS 25.0%
! AACACCAAAGAAACTAAATA+TGG + chr2_4:14227206-14227225 None:intergenic 25.0%
!! ACTCTTTTAATCATAATTGC+AGG - chr2_4:14227253-14227272 Msa0316940:exon 25.0%
!! TCGTTGTTGTTGAATCTTTT+CGG + chr2_4:14223231-14223250 None:intergenic 30.0%
AGATTCAACAACAACGATAA+TGG - chr2_4:14223234-14223253 Msa0316940:intron 30.0%
AAATAAATGGTCTTTGCAGA+AGG - chr2_4:14223591-14223610 Msa0316940:intron 30.0%
!! AGGGTATTCTAATTTGTTCT+TGG - chr2_4:14223649-14223668 Msa0316940:intron 30.0%
TTGAATGTAATCACATGTGT+CGG - chr2_4:14223793-14223812 Msa0316940:intron 30.0%
AGTAAAATTTGACAGAGTCA+GGG + chr2_4:14223984-14224003 None:intergenic 30.0%
! AATTTGCCTTTGACTTTGTA+AGG + chr2_4:14224022-14224041 None:intergenic 30.0%
TACAAAGTCAAAGGCAAATT+TGG - chr2_4:14224022-14224041 Msa0316940:intron 30.0%
TTTGTTAAGGATTGTGTTTG+TGG - chr2_4:14224536-14224555 Msa0316940:intron 30.0%
!!! AGTTTGTCATGCCTTTTTTT+AGG - chr2_4:14224622-14224641 Msa0316940:intron 30.0%
CAGAAGAGAAGATGAAAAAT+AGG - chr2_4:14224694-14224713 Msa0316940:intron 30.0%
AATAGGAAAAAAACTGCTGA+TGG - chr2_4:14224711-14224730 Msa0316940:intron 30.0%
GGATGATTATGATGTTGAAA+AGG - chr2_4:14224989-14225008 Msa0316940:intron 30.0%
! GACTTTTATCCTTCATAAGA+AGG - chr2_4:14225548-14225567 Msa0316940:CDS 30.0%
CTAACGATGTGTTTATAAGT+GGG - chr2_4:14225799-14225818 Msa0316940:CDS 30.0%
TAACGATGTGTTTATAAGTG+GGG - chr2_4:14225800-14225819 Msa0316940:CDS 30.0%
GGATTCTTAGAAATTGTGAT+TGG + chr2_4:14225865-14225884 None:intergenic 30.0%
! CTAGATGGATTTATTTGATC+TGG - chr2_4:14225894-14225913 Msa0316940:intron 30.0%
!!! CAGTTAGTTTTCTTAGATAG+AGG - chr2_4:14225984-14226003 Msa0316940:intron 30.0%
ACAAATATGGGAAATGCTAA+CGG + chr2_4:14226224-14226243 None:intergenic 30.0%
! AGTTAAGAATCTAAGATGCT+GGG - chr2_4:14226405-14226424 Msa0316940:intron 30.0%
!! TGTAGGTGTTATTGTAAAGA+GGG + chr2_4:14226485-14226504 None:intergenic 30.0%
!! TTGTAGGTGTTATTGTAAAG+AGG + chr2_4:14226486-14226505 None:intergenic 30.0%
ATCTGAACACAATTTACTTG+TGG + chr2_4:14226653-14226672 None:intergenic 30.0%
CAATGATAGATGTTCTTAGT+AGG - chr2_4:14226674-14226693 Msa0316940:intron 30.0%
TAGGTTAAATGTACCTTTCT+AGG - chr2_4:14226693-14226712 Msa0316940:intron 30.0%
AGGTTAAATGTACCTTTCTA+GGG - chr2_4:14226694-14226713 Msa0316940:intron 30.0%
! ATTTTTGTATGCTCAACTCT+AGG - chr2_4:14226811-14226830 Msa0316940:intron 30.0%
AAGGGAAATAACAGAAGAAA+AGG + chr2_4:14226988-14227007 None:intergenic 30.0%
!! TTACATTTTGACCCAGTTTT+AGG - chr2_4:14227086-14227105 Msa0316940:intron 30.0%
! CTAGTTAGTTTCCTAAAACT+GGG + chr2_4:14227100-14227119 None:intergenic 30.0%
! TCTAGTTAGTTTCCTAAAAC+TGG + chr2_4:14227101-14227120 None:intergenic 30.0%
AGGATGAAGATAATGAAGAA+GGG - chr2_4:14227294-14227313 Msa0316940:five_prime_UTR 30.0%
AGTTCATAGTTTCGGTCTTT+GGG + chr2_4:14223137-14223156 None:intergenic 35.0%
TTTCGCTCAGTTCATAGTTT+CGG + chr2_4:14223145-14223164 None:intergenic 35.0%
ACGAAGGAATTATCGTTCTA+GGG + chr2_4:14223182-14223201 None:intergenic 35.0%
AACGAAGGAATTATCGTTCT+AGG + chr2_4:14223183-14223202 None:intergenic 35.0%
GCGAGATTGAGATTTATGAT+AGG + chr2_4:14223209-14223228 None:intergenic 35.0%
TTCATTGGAAGGTTTATGAC+TGG - chr2_4:14223535-14223554 Msa0316940:intron 35.0%
TCATTGGAAGGTTTATGACT+GGG - chr2_4:14223536-14223555 Msa0316940:intron 35.0%
TCAAGTTACTGATGCTACAA+GGG - chr2_4:14223630-14223649 Msa0316940:intron 35.0%
GGATTATTGCTTTGTCTTTG+TGG - chr2_4:14223670-14223689 Msa0316940:intron 35.0%
! AGAGCATACATGGTGTTTTT+AGG + chr2_4:14223897-14223916 None:intergenic 35.0%
! ACAACTTCTAAGAGCATACA+TGG + chr2_4:14223907-14223926 None:intergenic 35.0%
GAGTAAAATTTGACAGAGTC+AGG + chr2_4:14223985-14224004 None:intergenic 35.0%
AACATGTTCGATATGCTAGT+TGG + chr2_4:14224071-14224090 None:intergenic 35.0%
TTACCATGACATGATGACTT+CGG + chr2_4:14224198-14224217 None:intergenic 35.0%
! TCATCATGTCATGGTAATGT+TGG - chr2_4:14224201-14224220 Msa0316940:intron 35.0%
! CATCATGTCATGGTAATGTT+GGG - chr2_4:14224202-14224221 Msa0316940:intron 35.0%
AGAAAGTGAATAATTGCCTC+TGG - chr2_4:14224293-14224312 Msa0316940:intron 35.0%
GAAAGTGAATAATTGCCTCT+GGG - chr2_4:14224294-14224313 Msa0316940:intron 35.0%
CTATTAGTATTACAACCCAG+AGG + chr2_4:14224312-14224331 None:intergenic 35.0%
CTCTGGGTTGTAATACTAAT+AGG - chr2_4:14224310-14224329 Msa0316940:intron 35.0%
!! GATTTGGTGTTGCATTACAT+AGG - chr2_4:14224363-14224382 Msa0316940:intron 35.0%
CATAGGAGAAATACAAGAAC+AGG - chr2_4:14224380-14224399 Msa0316940:intron 35.0%
TACGTATTACCTGCTAATGA+AGG - chr2_4:14224471-14224490 Msa0316940:intron 35.0%
CAATCCTTAACAAACATACC+AGG + chr2_4:14224530-14224549 None:intergenic 35.0%
TTATACTGCTCAAAGACAGT+AGG - chr2_4:14224590-14224609 Msa0316940:intron 35.0%
ATGATGAAAGCAGCGAATAA+TGG - chr2_4:14224747-14224766 Msa0316940:intron 35.0%
TGATGAAAGCAGCGAATAAT+GGG - chr2_4:14224748-14224767 Msa0316940:intron 35.0%
! CATCATCACCAGTCTTTTTA+CGG + chr2_4:14224839-14224858 None:intergenic 35.0%
CATCATAATCATCCTCATCA+TGG + chr2_4:14224983-14225002 None:intergenic 35.0%
ACTTTAATGAGTTTGTGCTG+TGG - chr2_4:14225138-14225157 Msa0316940:CDS 35.0%
TTGCTTCTTGAAAGTTGACT+CGG - chr2_4:14225212-14225231 Msa0316940:intron 35.0%
TGTACTTGTACATCTGTTAC+AGG - chr2_4:14225296-14225315 Msa0316940:intron 35.0%
ATCTGTTACAGGTGATGATT+GGG - chr2_4:14225307-14225326 Msa0316940:intron 35.0%
AAACTAACCTGTTTGATCTC+AGG + chr2_4:14225422-14225441 None:intergenic 35.0%
AATTAGCCATGACATAGAGA+GGG + chr2_4:14225490-14225509 None:intergenic 35.0%
GTCATGGCTAATTCTACAAT+TGG - chr2_4:14225497-14225516 Msa0316940:intron 35.0%
AATCTCACTCATTACCTCTA+TGG + chr2_4:14225641-14225660 None:intergenic 35.0%
TGAGGTAAACGATCTATCAT+TGG - chr2_4:14225661-14225680 Msa0316940:CDS 35.0%
ATGCCATGTAATCGGTATTA+AGG + chr2_4:14225688-14225707 None:intergenic 35.0%
! TTAATACCGATTACATGGCA+TGG - chr2_4:14225687-14225706 Msa0316940:CDS 35.0%
ACAAAACCATGCCATGTAAT+CGG + chr2_4:14225696-14225715 None:intergenic 35.0%
! GGACAACAATTTTCACAACA+AGG + chr2_4:14225719-14225738 None:intergenic 35.0%
CGATTTGCAACTCTTTAACA+GGG + chr2_4:14225766-14225785 None:intergenic 35.0%
CCTGTTAAAGAGTTGCAAAT+CGG - chr2_4:14225764-14225783 Msa0316940:CDS 35.0%
GTTGCAAATCGGATAAAAGA+TGG - chr2_4:14225775-14225794 Msa0316940:CDS 35.0%
CCACTTATAAACACATCGTT+AGG + chr2_4:14225801-14225820 None:intergenic 35.0%
CCTAACGATGTGTTTATAAG+TGG - chr2_4:14225798-14225817 Msa0316940:CDS 35.0%
AACGATGTGTTTATAAGTGG+GGG - chr2_4:14225801-14225820 Msa0316940:CDS 35.0%
TAAATCCATCTAGAGAGTGA+CGG + chr2_4:14225887-14225906 None:intergenic 35.0%
! GAGTTAAGAATCTAAGATGC+TGG - chr2_4:14226404-14226423 Msa0316940:intron 35.0%
TTGTAAAGAGGGATGAACAT+GGG + chr2_4:14226474-14226493 None:intergenic 35.0%
ATTGTAAAGAGGGATGAACA+TGG + chr2_4:14226475-14226494 None:intergenic 35.0%
! CAAAAAAAAGGGTGACTTGT+AGG + chr2_4:14226502-14226521 None:intergenic 35.0%
AGTAGAAGGAGGAAGAAAAT+GGG + chr2_4:14226541-14226560 None:intergenic 35.0%
AAGTAGAAGGAGGAAGAAAA+TGG + chr2_4:14226542-14226561 None:intergenic 35.0%
AACGAAAATGAAGTAGAAGG+AGG + chr2_4:14226552-14226571 None:intergenic 35.0%
! GAACTTATTGATAGCAGGAA+TGG + chr2_4:14226592-14226611 None:intergenic 35.0%
TTATGGGTGCCTATATTGAT+GGG - chr2_4:14226755-14226774 Msa0316940:intron 35.0%
TTTGGGAAACCCATCAATAT+AGG + chr2_4:14226767-14226786 None:intergenic 35.0%
! TCTCGTGTAATCTTTGTTTG+TGG - chr2_4:14226889-14226908 Msa0316940:intron 35.0%
! CTCGTGTAATCTTTGTTTGT+GGG - chr2_4:14226890-14226909 Msa0316940:intron 35.0%
AATACATTCCCTTGCTAGAT+AGG - chr2_4:14227021-14227040 Msa0316940:intron 35.0%
TACAAACAAGAGTAACTGAC+AGG + chr2_4:14227055-14227074 None:intergenic 35.0%
! ACTCTTGTTTGTATGTGAGT+TGG - chr2_4:14227062-14227081 Msa0316940:intron 35.0%
! CTCTTGTTTGTATGTGAGTT+GGG - chr2_4:14227063-14227082 Msa0316940:intron 35.0%
AATATAACATGGAGTGGATG+AGG - chr2_4:14227174-14227193 Msa0316940:CDS 35.0%
! ATAATTGCAGGATGATGATG+AGG - chr2_4:14227265-14227284 Msa0316940:exon 35.0%
GAGGATGAAGATAATGAAGA+AGG - chr2_4:14227293-14227312 Msa0316940:five_prime_UTR 35.0%
GGATGAAGATAATGAAGAAG+GGG - chr2_4:14227295-14227314 Msa0316940:five_prime_UTR 35.0%
GATGAAGATAATGAAGAAGG+GGG - chr2_4:14227296-14227315 Msa0316940:five_prime_UTR 35.0%
ATCGTTTGCTCAGTTTCTGA+GGG + chr2_4:14223113-14223132 None:intergenic 40.0%
AATCGTTTGCTCAGTTTCTG+AGG + chr2_4:14223114-14223133 None:intergenic 40.0%
CAGTTCATAGTTTCGGTCTT+TGG + chr2_4:14223138-14223157 None:intergenic 40.0%
CAATTGAAATCCAGTTGCAG+CGG - chr2_4:14223262-14223281 Msa0316940:intron 40.0%
GTATAATGTTCGTGCGAGTT+CGG - chr2_4:14223495-14223514 Msa0316940:intron 40.0%
AAATGGTCTTTGCAGAAGGA+TGG - chr2_4:14223595-14223614 Msa0316940:intron 40.0%
!! TTTGCAGAAGGATGGATTGA+AGG - chr2_4:14223603-14223622 Msa0316940:intron 40.0%
!! TTGCAGAAGGATGGATTGAA+GGG - chr2_4:14223604-14223623 Msa0316940:intron 40.0%
GTCAAGTTACTGATGCTACA+AGG - chr2_4:14223629-14223648 Msa0316940:intron 40.0%
CTGATCGAAGACATGTCTTT+CGG + chr2_4:14223845-14223864 None:intergenic 40.0%
! ATGTCTTCGATCAGAAGTGT+CGG - chr2_4:14223851-14223870 Msa0316940:intron 40.0%
TGAGTGCCTTACAAAGTCAA+AGG - chr2_4:14224013-14224032 Msa0316940:intron 40.0%
! CCATAAAAGCCAGTTTTCTC+GGG + chr2_4:14224099-14224118 None:intergenic 40.0%
! CCCATAAAAGCCAGTTTTCT+CGG + chr2_4:14224100-14224119 None:intergenic 40.0%
!!! CCGAGAAAACTGGCTTTTAT+GGG - chr2_4:14224097-14224116 Msa0316940:intron 40.0%
!!! CGAGAAAACTGGCTTTTATG+GGG - chr2_4:14224098-14224117 Msa0316940:intron 40.0%
!!! GAGAAAACTGGCTTTTATGG+GGG - chr2_4:14224099-14224118 Msa0316940:intron 40.0%
!!! AGAAAACTGGCTTTTATGGG+GGG - chr2_4:14224100-14224119 Msa0316940:intron 40.0%
ATACCGAAGTCATCATGTCA+TGG - chr2_4:14224192-14224211 Msa0316940:intron 40.0%
AGAAATACAAGAACAGGCCT+TGG - chr2_4:14224386-14224405 Msa0316940:intron 40.0%
TTCAAGATGACCCTGAAACT+GGG + chr2_4:14224437-14224456 None:intergenic 40.0%
! CCTTCTTTTCCTTCATTAGC+AGG + chr2_4:14224483-14224502 None:intergenic 40.0%
CCTGCTAATGAAGGAAAAGA+AGG - chr2_4:14224480-14224499 Msa0316940:intron 40.0%
! GGTTCCTGGTATGTTTGTTA+AGG - chr2_4:14224523-14224542 Msa0316940:intron 40.0%
! CTGCTGATGGATATCAAAGA+TGG - chr2_4:14224724-14224743 Msa0316940:intron 40.0%
ACATGGGAAGTTAGATGACA+AGG - chr2_4:14224788-14224807 Msa0316940:intron 40.0%
! ACTGGTGATGATGAAGATGA+AGG - chr2_4:14224846-14224865 Msa0316940:intron 40.0%
ATCTTCCTCTCCTTTATCAG+AGG + chr2_4:14224877-14224896 None:intergenic 40.0%
ATGAAGACGAGGAAGTAGAT+AGG - chr2_4:14224895-14224914 Msa0316940:intron 40.0%
ACCTTTGACGATGATGAAGA+AGG - chr2_4:14224942-14224961 Msa0316940:intron 40.0%
ACCTTCTTCATCATCGTCAA+AGG + chr2_4:14224946-14224965 None:intergenic 40.0%
CATCTGTTACAGGTGATGAT+TGG - chr2_4:14225306-14225325 Msa0316940:intron 40.0%
! ACTGATGATGATGAAGCTGT+TGG - chr2_4:14225347-14225366 Msa0316940:intron 40.0%
ATATTGCCCTCTCTATGTCA+TGG - chr2_4:14225481-14225500 Msa0316940:intron 40.0%
GAATTAGCCATGACATAGAG+AGG + chr2_4:14225491-14225510 None:intergenic 40.0%
TTAGAGGTAAAGAGAGACGA+TGG - chr2_4:14225600-14225619 Msa0316940:CDS 40.0%
AGAGAGACGATGGAAACTAT+AGG - chr2_4:14225610-14225629 Msa0316940:CDS 40.0%
AACTATAGGCCAAACCATAG+AGG - chr2_4:14225624-14225643 Msa0316940:CDS 40.0%
CACTCATTACCTCTATGGTT+TGG + chr2_4:14225636-14225655 None:intergenic 40.0%
GAGGTAATGAGTGAGATTTG+AGG - chr2_4:14225643-14225662 Msa0316940:CDS 40.0%
! GGACCTTAATACCGATTACA+TGG - chr2_4:14225682-14225701 Msa0316940:CDS 40.0%
! CCGATTTGCAACTCTTTAAC+AGG + chr2_4:14225767-14225786 None:intergenic 40.0%
AAATCCATCTAGAGAGTGAC+GGG + chr2_4:14225886-14225905 None:intergenic 40.0%
GCAAAGTCAATCACGTTCAT+TGG - chr2_4:14226256-14226275 Msa0316940:intron 40.0%
AAGTCAATCACGTTCATTGG+TGG - chr2_4:14226259-14226278 Msa0316940:intron 40.0%
AGTCAATCACGTTCATTGGT+GGG - chr2_4:14226260-14226279 Msa0316940:intron 40.0%
TGAGACAAGCCAAGTTAACT+TGG + chr2_4:14226374-14226393 None:intergenic 40.0%
GTAGAAGGAGGAAGAAAATG+GGG + chr2_4:14226540-14226559 None:intergenic 40.0%
GTCTCATGATTTCTACCTTG+AGG - chr2_4:14226719-14226738 Msa0316940:intron 40.0%
TGATTTCTACCTTGAGGACT+AGG - chr2_4:14226725-14226744 Msa0316940:intron 40.0%
AGGACTAGGCAATCACTTAT+GGG - chr2_4:14226739-14226758 Msa0316940:intron 40.0%
CTTATGGGTGCCTATATTGA+TGG - chr2_4:14226754-14226773 Msa0316940:intron 40.0%
CAACTCTAGGCAGAAAATAG+AGG - chr2_4:14226824-14226843 Msa0316940:intron 40.0%
! AGTTTGCTCCTATCTAGCAA+GGG + chr2_4:14227032-14227051 None:intergenic 40.0%
GGAAACTAACTAGAGACTGA+TGG - chr2_4:14227107-14227126 Msa0316940:CDS 40.0%
!! CGTTCTAGGGTTTCGTGATT+GGG + chr2_4:14223169-14223188 None:intergenic 45.0%
!! TCGTTCTAGGGTTTCGTGAT+TGG + chr2_4:14223170-14223189 None:intergenic 45.0%
!! TTTAGAGCGATTTTCCGCCA+TGG + chr2_4:14223359-14223378 None:intergenic 45.0%
! TGTTTTCAGCCCGAGAAAAC+TGG - chr2_4:14224087-14224106 Msa0316940:intron 45.0%
!!! CCCGAGAAAACTGGCTTTTA+TGG - chr2_4:14224096-14224115 Msa0316940:intron 45.0%
CTTCAAGATGACCCTGAAAC+TGG + chr2_4:14224438-14224457 None:intergenic 45.0%
CAGTTTCAGGGTCATCTTGA+AGG - chr2_4:14224436-14224455 Msa0316940:intron 45.0%
!! AATAATGGGCCTGCTGCATT+TGG - chr2_4:14224762-14224781 Msa0316940:intron 45.0%
! CTGCTGCATTTGGTGAACAT+GGG - chr2_4:14224772-14224791 Msa0316940:intron 45.0%
GAAGGTCCTTCCTCTGATAA+AGG - chr2_4:14224864-14224883 Msa0316940:intron 45.0%
TCCTTCCTCTGATAAAGGAG+AGG - chr2_4:14224869-14224888 Msa0316940:intron 45.0%
TCCTCTCCTTTATCAGAGGA+AGG + chr2_4:14224873-14224892 None:intergenic 45.0%
ACGATGATGAAGAAGGTCCA+AGG - chr2_4:14224949-14224968 Msa0316940:intron 45.0%
CGATGATGAAGAAGGTCCAA+GGG - chr2_4:14224950-14224969 Msa0316940:intron 45.0%
GATGATGAAGAAGGTCCAAG+GGG - chr2_4:14224951-14224970 Msa0316940:intron 45.0%
!! TTGGTAATGATCCCGAGGAA+AGG - chr2_4:14225366-14225385 Msa0316940:intron 45.0%
! TGGTAATGATCCCGAGGAAA+GGG - chr2_4:14225367-14225386 Msa0316940:intron 45.0%
AGCCAAATCTTCCCTTTCCT+CGG + chr2_4:14225381-14225400 None:intergenic 45.0%
CTAACCTGTTTGATCTCAGG+AGG + chr2_4:14225419-14225438 None:intergenic 45.0%
CTAACACAACCCCACATAAC+CGG + chr2_4:14225840-14225859 None:intergenic 45.0%
TTGGATAACGAGTGCCTCTA+GGG - chr2_4:14226077-14226096 Msa0316940:CDS 45.0%
!! ATCCTTAAAGAGTGCCCTAG+AGG + chr2_4:14226094-14226113 None:intergenic 45.0%
! TGCTAACGGAGCACTCTTTA+AGG + chr2_4:14226210-14226229 None:intergenic 45.0%
! AATCACGTTCATTGGTGGGT+TGG - chr2_4:14226264-14226283 Msa0316940:intron 45.0%
!! CAAGCCTTGTTCCACTTAGT+GGG - chr2_4:14226314-14226333 Msa0316940:intron 45.0%
!! AAGCCTTGTTCCACTTAGTG+GGG - chr2_4:14226315-14226334 Msa0316940:intron 45.0%
AGGAGGAAGAAAATGGGGTT+AGG + chr2_4:14226535-14226554 None:intergenic 45.0%
ATCATGAGACTGCCCTAGAA+AGG + chr2_4:14226709-14226728 None:intergenic 45.0%
AAGTGATTGCCTAGTCCTCA+AGG + chr2_4:14226737-14226756 None:intergenic 45.0%
GAGGACTAGGCAATCACTTA+TGG - chr2_4:14226738-14226757 Msa0316940:intron 45.0%
! GAGTTTGCTCCTATCTAGCA+AGG + chr2_4:14227033-14227052 None:intergenic 45.0%
ACTAACTAGAGACTGATGGC+AGG - chr2_4:14227111-14227130 Msa0316940:CDS 45.0%
! ATTGCAGGATGATGATGAGG+AGG - chr2_4:14227268-14227287 Msa0316940:exon 45.0%
GAAGATAATGAAGAAGGGGG+AGG - chr2_4:14227299-14227318 Msa0316940:five_prime_UTR 45.0%
AAAGAGCTGAAGAAGCTGCT+TGG - chr2_4:14227338-14227357 Msa0316940:five_prime_UTR 45.0%
AAGAGCTGAAGAAGCTGCTT+GGG - chr2_4:14227339-14227358 Msa0316940:five_prime_UTR 45.0%
TGGTGGTCTAAGTGAATCTG+AGG - chr2_4:14227367-14227386 Msa0316940:five_prime_UTR 45.0%
!! ATTAAATATGTATTTATTTA+TGG - chr2_4:14225526-14225545 Msa0316940:CDS 5.0%
AAATCCAGTTGCAGCGGATG+CGG - chr2_4:14223268-14223287 Msa0316940:intron 50.0%
! GGTGAAACCACTGGTCTCTA+CGG - chr2_4:14223289-14223308 Msa0316940:intron 50.0%
ATTGCTTCCGTAGAGACCAG+TGG + chr2_4:14223299-14223318 None:intergenic 50.0%
ATGAAGCGCATACACGACAC+CGG - chr2_4:14223721-14223740 Msa0316940:intron 50.0%
GTTTCATCCTCCAAGAGCCA+AGG + chr2_4:14224406-14224425 None:intergenic 50.0%
TGGCTCTTGGAGGATGAAAC+AGG - chr2_4:14224406-14224425 Msa0316940:intron 50.0%
AACAGGTCAGTCCCAGTTTC+AGG - chr2_4:14224423-14224442 Msa0316940:intron 50.0%
ACAGGTCAGTCCCAGTTTCA+GGG - chr2_4:14224424-14224443 Msa0316940:intron 50.0%
!! GAGTTTGTTGCCATTCCTGC+TGG - chr2_4:14224502-14224521 Msa0316940:intron 50.0%
ATACCAGGAACCAGCAGGAA+TGG + chr2_4:14224515-14224534 None:intergenic 50.0%
CAAACATACCAGGAACCAGC+AGG + chr2_4:14224520-14224539 None:intergenic 50.0%
CCATGTTCACCAAATGCAGC+AGG + chr2_4:14224774-14224793 None:intergenic 50.0%
! CCTGCTGCATTTGGTGAACA+TGG - chr2_4:14224771-14224790 Msa0316940:intron 50.0%
GATGACAAGGAGAGCAATGC+AGG - chr2_4:14224801-14224820 Msa0316940:intron 50.0%
AGGAGAGGAAGATGAAGACG+AGG - chr2_4:14224884-14224903 Msa0316940:intron 50.0%
ATGAAGAAGGTCCAAGGGGA+GGG - chr2_4:14224955-14224974 Msa0316940:intron 50.0%
GTGCTGTGGATCTATTCACC+TGG - chr2_4:14225152-14225171 Msa0316940:CDS 50.0%
CTGTGGATCTATTCACCTGG+AGG - chr2_4:14225155-14225174 Msa0316940:CDS 50.0%
TGGATCTATTCACCTGGAGG+AGG - chr2_4:14225158-14225177 Msa0316940:CDS 50.0%
!! AGCTGTTGGTAATGATCCCG+AGG - chr2_4:14225361-14225380 Msa0316940:intron 50.0%
TCCCGAGGAAAGGGAAGATT+TGG - chr2_4:14225376-14225395 Msa0316940:intron 50.0%
GCCAAATCTTCCCTTTCCTC+GGG + chr2_4:14225380-14225399 None:intergenic 50.0%
TGTTTGATCTCAGGAGGAGC+GGG + chr2_4:14225413-14225432 None:intergenic 50.0%
CTGTTTGATCTCAGGAGGAG+CGG + chr2_4:14225414-14225433 None:intergenic 50.0%
ATCCTCACAAGCCGGTTATG+TGG - chr2_4:14225826-14225845 Msa0316940:CDS 50.0%
TCCTCACAAGCCGGTTATGT+GGG - chr2_4:14225827-14225846 Msa0316940:CDS 50.0%
CGGTTATGTGGGGTTGTGTT+AGG - chr2_4:14225838-14225857 Msa0316940:CDS 50.0%
GAATCCCGTCACTCTCTAGA+TGG - chr2_4:14225879-14225898 Msa0316940:intron 50.0%
GTTGGATAACGAGTGCCTCT+AGG - chr2_4:14226076-14226095 Msa0316940:CDS 50.0%
!! TGCCTCTAGGGCACTCTTTA+AGG - chr2_4:14226089-14226108 Msa0316940:CDS 50.0%
CTAAGTGGAACAAGGCTTGG+TGG + chr2_4:14226313-14226332 None:intergenic 50.0%
CCACTAAGTGGAACAAGGCT+TGG + chr2_4:14226316-14226335 None:intergenic 50.0%
!! CCAAGCCTTGTTCCACTTAG+TGG - chr2_4:14226313-14226332 Msa0316940:intron 50.0%
CAACCCCACTAAGTGGAACA+AGG + chr2_4:14226321-14226340 None:intergenic 50.0%
CTTGTTCCACTTAGTGGGGT+TGG - chr2_4:14226319-14226338 Msa0316940:intron 50.0%
! TTCCACTTAGTGGGGTTGGT+GGG - chr2_4:14226323-14226342 Msa0316940:intron 50.0%
GGGGAGGTCTGAGTAAATCT+GGG - chr2_4:14227315-14227334 Msa0316940:five_prime_UTR 50.0%
TTGACTATTTGCGCCCCCTG+TGG - chr2_4:14223328-14223347 Msa0316940:intron 55.0%
!! TCCGCCATGGTTTTGCCACA+GGG + chr2_4:14223346-14223365 None:intergenic 55.0%
!! TTCCGCCATGGTTTTGCCAC+AGG + chr2_4:14223347-14223366 None:intergenic 55.0%
! CGCTCTAAATGCTCCACCTG+TGG - chr2_4:14223370-14223389 Msa0316940:intron 55.0%
ACACGACACCGGATACACAC+TGG - chr2_4:14223732-14223751 Msa0316940:intron 55.0%
TCGACGTGCCAGTGTGTATC+CGG + chr2_4:14223743-14223762 None:intergenic 55.0%
ACACACTGGCACGTCGACAT+TGG - chr2_4:14223746-14223765 Msa0316940:intron 55.0%
! CAAGAACAGGCCTTGGCTCT+TGG - chr2_4:14224393-14224412 Msa0316940:intron 55.0%
!! TTGCCATTCCTGCTGGTTCC+TGG - chr2_4:14224509-14224528 Msa0316940:intron 55.0%
GACAAGGAGAGCAATGCAGG+TGG - chr2_4:14224804-14224823 Msa0316940:intron 55.0%
AAGGAGAGCAATGCAGGTGG+TGG - chr2_4:14224807-14224826 Msa0316940:intron 55.0%
AGGAGAGCAATGCAGGTGGT+GGG - chr2_4:14224808-14224827 Msa0316940:intron 55.0%
GGGAGAGGCCGTAAAAAGAC+TGG - chr2_4:14224828-14224847 Msa0316940:intron 55.0%
GATGAAGAAGGTCCAAGGGG+AGG - chr2_4:14224954-14224973 Msa0316940:intron 55.0%
TGAAGAAGGTCCAAGGGGAG+GGG - chr2_4:14224956-14224975 Msa0316940:intron 55.0%
CGCTCCTCCTGAGATCAAAC+AGG - chr2_4:14225412-14225431 Msa0316940:intron 55.0%
TGGGGGTAATCCTCACAAGC+CGG - chr2_4:14225818-14225837 Msa0316940:CDS 55.0%
CCTCACAAGCCGGTTATGTG+GGG - chr2_4:14225828-14225847 Msa0316940:CDS 55.0%
GTTCCACTTAGTGGGGTTGG+TGG - chr2_4:14226322-14226341 Msa0316940:intron 55.0%
! GCAGGATGATGATGAGGAGG+AGG - chr2_4:14227271-14227290 Msa0316940:five_prime_UTR 55.0%
! GGATGATGATGAGGAGGAGG+AGG - chr2_4:14227274-14227293 Msa0316940:five_prime_UTR 55.0%
GGGGGAGGTCTGAGTAAATC+TGG - chr2_4:14227314-14227333 Msa0316940:five_prime_UTR 55.0%
ACGACGACGACGACGATGTA+TGG - chr2_4:14227399-14227418 Msa0316940:five_prime_UTR 55.0%
CGACGACGACGACGATGTAT+GGG - chr2_4:14227400-14227419 Msa0316940:five_prime_UTR 55.0%
TTCACCGCATCCGCTGCAAC+TGG + chr2_4:14223275-14223294 None:intergenic 60.0%
AGCGGATGCGGTGAAACCAC+TGG - chr2_4:14223280-14223299 Msa0316940:intron 60.0%
!! CGCCATGGTTTTGCCACAGG+GGG + chr2_4:14223344-14223363 None:intergenic 60.0%
!! CCGCCATGGTTTTGCCACAG+GGG + chr2_4:14223345-14223364 None:intergenic 60.0%
CCCCTGTGGCAAAACCATGG+CGG - chr2_4:14223342-14223361 Msa0316940:intron 60.0%
! GAACAGGCCTTGGCTCTTGG+AGG - chr2_4:14224396-14224415 Msa0316940:intron 60.0%
!! AGCAATGCAGGTGGTGGGAG+AGG - chr2_4:14224813-14224832 Msa0316940:intron 60.0%
TCATCATGGTCCCCTCCCCT+TGG + chr2_4:14224969-14224988 None:intergenic 60.0%
AAGGGGAGGGGACCATGATG+AGG - chr2_4:14224968-14224987 Msa0316940:intron 60.0%
ACTCTGCGCTATCCTCCTCC+AGG + chr2_4:14225173-14225192 None:intergenic 60.0%
TCAGGAGGAGCGGGAACTTC+GGG + chr2_4:14225404-14225423 None:intergenic 60.0%
CTCAGGAGGAGCGGGAACTT+CGG + chr2_4:14225405-14225424 None:intergenic 60.0%
!! CCCCACATAACCGGCTTGTG+AGG + chr2_4:14225831-14225850 None:intergenic 60.0%
CACCCACCAACCCCACTAAG+TGG + chr2_4:14226328-14226347 None:intergenic 60.0%
AAGAAGCTGCTTGGGCGAGC+TGG - chr2_4:14227347-14227366 Msa0316940:five_prime_UTR 60.0%
CGCCCCCTGTGGCAAAACCA+TGG - chr2_4:14223339-14223358 Msa0316940:intron 65.0%
AGTGAGCAACGCGCCACAGG+TGG + chr2_4:14223386-14223405 None:intergenic 65.0%
ACGAGTGAGCAACGCGCCAC+AGG + chr2_4:14223389-14223408 None:intergenic 65.0%
AAGCTGCTTGGGCGAGCTGG+TGG - chr2_4:14227350-14227369 Msa0316940:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 14223083 14227439 14223083 ID=Msa0316940;Name=Msa0316940
chr2_4 mRNA 14223083 14227439 14223083 ID=Msa0316940-mRNA-1;Parent=Msa0316940;Name=Msa0316940-mRNA-1;_AED=0.36;_eAED=0.36;_QI=170|0.75|0.8|1|1|1|5|0|320
chr2_4 exon 14223083 14223247 14223083 ID=Msa0316940-mRNA-1:exon:5444;Parent=Msa0316940-mRNA-1
chr2_4 exon 14225089 14225204 14225089 ID=Msa0316940-mRNA-1:exon:5443;Parent=Msa0316940-mRNA-1
chr2_4 exon 14225511 14225878 14225511 ID=Msa0316940-mRNA-1:exon:5442;Parent=Msa0316940-mRNA-1
chr2_4 exon 14225992 14226137 14225992 ID=Msa0316940-mRNA-1:exon:5441;Parent=Msa0316940-mRNA-1
chr2_4 exon 14227105 14227439 14227105 ID=Msa0316940-mRNA-1:exon:5440;Parent=Msa0316940-mRNA-1
chr2_4 five_prime_UTR 14227270 14227439 14227270 ID=Msa0316940-mRNA-1:five_prime_utr;Parent=Msa0316940-mRNA-1
chr2_4 CDS 14227105 14227269 14227105 ID=Msa0316940-mRNA-1:cds;Parent=Msa0316940-mRNA-1
chr2_4 CDS 14225992 14226137 14225992 ID=Msa0316940-mRNA-1:cds;Parent=Msa0316940-mRNA-1
chr2_4 CDS 14225511 14225878 14225511 ID=Msa0316940-mRNA-1:cds;Parent=Msa0316940-mRNA-1
chr2_4 CDS 14225089 14225204 14225089 ID=Msa0316940-mRNA-1:cds;Parent=Msa0316940-mRNA-1
chr2_4 CDS 14223083 14223247 14223083 ID=Msa0316940-mRNA-1:cds;Parent=Msa0316940-mRNA-1
Gene Sequence

>Msa0316940

ATGGATCTTCAATTGAAATCCAGTTGCAGCGGATGCGGTGAAACCACTGGTCTCTACGGAAGCAATTGCAAGCACTTGACTATTTGCGCCCCCTGTGGCAAAACCATGGCGGAAAATCGCTCTAAATGCTCCACCTGTGGCGCGTTGCTCACTCGTTTGATTCGAGAGAAATACAAGAACAGGCCTTGGCTCTTGGAGGATGAAACAGGTCAGTCCCAGTTTCAGGGTCATCTTGAAGGTTCACAATCAGCTACGTATTACCTGCTAATGAAGGAAAAGAAGGAGTTTGTTGCCATTCCTGCTGGTTCCTGGTACAACTTTAACAAGGTCGCGCAATATAAGCAATTGACTTTAGAGGAAGCAGAAGAGAAGATGAAAAATAGGAAAAAAACTGCTGATGGATATCAAAGATGGATGATGAAAGCAGCGAATAATGGGCCTGCTGCATTTGGTGAACATGGGAAGTTAGATGACAAGGAGAGCAATGCAGGTGGTGGGAGAGGCCGTAAAAAGACTGGTGATGATGAAGATGAAGGTCCTTCCTCTGATAAAGGAGAGGAAGATGAAGACGAGGAAGTAGATAGGAAGAAAAGACCGAATAAAAAAAATACCTTTGACGATGATGAAGAAGGTCCAAGGGGAGGGGACCATGATGAGGATGATTATGATGTTGAAAAGGGTGATGATTGGGAGCATGAAGAGATTTTCACTGATGATGATGAAGCTGTTGGTAATGATCCCGAGGAAAGGGAAGATTTGGCTCCCGAAGTTCCCGCTCCTCCTGAGATCAAACAGGATGATGATGAGGAGGAGGAGGATGAAGATAATGAAGAAGGGGGAGGTCTGAGTAAATCTGGGAAAGAGCTGAAGAAGCTGCTTGGGCGAGCTGGTGGTCTAAGTGAATCTGAGGACGATGACGACGACGACGACGACGATGTATGGGTTTTATTCCTTCTTTCT
Protein sequence

>Msa0316940

MDLQLKSSCSGCGETTGLYGSNCKHLTICAPCGKTMAENRSKCSTCGALLTRLIREKYKNRPWLLEDETGQSQFQGHLEGSQSATYYLLMKEKKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYQRWMMKAANNGPAAFGEHGKLDDKESNAGGGRGRKKTGDDEDEGPSSDKGEEDEDEEVDRKKRPNKKNTFDDDEEGPRGGDHDEDDYDVEKGDDWEHEEIFTDDDEAVGNDPEEREDLAPEVPAPPEIKQDDDEEEEDEDNEEGGGLSKSGKELKKLLGRAGGLSESEDDDDDDDDDVWVLFLLS