Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0073460 | XP_013468154.1 | 94.379 | 338 | 14 | 1 | 1 | 338 | 1 | 333 | 4.33e-180 | 511 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0073460 | sp|Q9LZF1|HIP6_ARATH | 39.851 | 404 | 165 | 12 | 1 | 338 | 1 | 392 | 5.55e-59 | 197 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0073460 | A0A072VKN3 | 94.379 | 338 | 14 | 1 | 1 | 338 | 1 | 333 | 2.07e-180 | 511 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004860 | Msa0073460 | 0.805984 | 1.025263e-49 | -8.615850e-47 |
| Msa0004920 | Msa0073460 | 0.800022 | 1.750932e-48 | -8.615850e-47 |
| Msa0006880 | Msa0073460 | 0.815890 | 7.331561e-52 | -8.615850e-47 |
| Msa0008410 | Msa0073460 | 0.816670 | 4.906509e-52 | -8.615850e-47 |
| Msa0010820 | Msa0073460 | 0.807017 | 6.207481e-50 | -8.615850e-47 |
| Msa0015300 | Msa0073460 | 0.827454 | 1.550583e-54 | -8.615850e-47 |
| Msa0025740 | Msa0073460 | 0.929734 | 4.539163e-93 | -8.615850e-47 |
| Msa0052860 | Msa0073460 | 0.820382 | 7.066056e-53 | -8.615850e-47 |
| Msa0055150 | Msa0073460 | 0.826604 | 2.476633e-54 | -8.615850e-47 |
| Msa0056030 | Msa0073460 | 0.817387 | 3.385621e-52 | -8.615850e-47 |
| Msa0057140 | Msa0073460 | 0.849883 | 2.429034e-60 | -8.615850e-47 |
| Msa0073460 | Msa0076000 | 0.807661 | 4.533452e-50 | -8.615850e-47 |
| Msa0073460 | Msa0084940 | 0.821373 | 4.180284e-53 | -8.615850e-47 |
| Msa0073460 | Msa0094920 | 0.829795 | 4.215366e-55 | -8.615850e-47 |
| Msa0073460 | Msa0121620 | 0.894516 | 2.292128e-75 | -8.615850e-47 |
| Msa0073460 | Msa0137710 | -0.803016 | 4.263571e-49 | -8.615850e-47 |
| Msa0073460 | Msa0149000 | 0.815740 | 7.916526e-52 | -8.615850e-47 |
| Msa0073460 | Msa0165970 | 0.947966 | 2.393839e-106 | -8.615850e-47 |
| Msa0073460 | Msa0170570 | 0.802193 | 6.301578e-49 | -8.615850e-47 |
| Msa0073460 | Msa0233350 | 0.808828 | 2.556599e-50 | -8.615850e-47 |
| Msa0073460 | Msa0233610 | 0.846745 | 1.791252e-59 | -8.615850e-47 |
| Msa0073460 | Msa0236440 | 0.809692 | 1.668532e-50 | -8.615850e-47 |
| Msa0073460 | Msa0260210 | 0.831175 | 1.937222e-55 | -8.615850e-47 |
| Msa0073460 | Msa0261110 | 0.814739 | 1.321395e-51 | -8.615850e-47 |
| Msa0073460 | Msa0274350 | 0.841221 | 5.418282e-58 | -8.615850e-47 |
| Msa0073460 | Msa0280630 | 0.801756 | 7.748374e-49 | -8.615850e-47 |
| Msa0073460 | Msa0291500 | 0.829170 | 5.981039e-55 | -8.615850e-47 |
| Msa0073460 | Msa0304290 | 0.832655 | 8.351609e-56 | -8.615850e-47 |
| Msa0073460 | Msa0304330 | 0.834720 | 2.545237e-56 | -8.615850e-47 |
| Msa0073460 | Msa0305890 | 0.814366 | 1.597829e-51 | -8.615850e-47 |
| Msa0073460 | Msa0307560 | 0.810988 | 8.762962e-51 | -8.615850e-47 |
| Msa0073460 | Msa0314250 | 0.845497 | 3.914979e-59 | -8.615850e-47 |
| Msa0073460 | Msa0316940 | 0.821919 | 3.124818e-53 | -8.615850e-47 |
| Msa0073460 | Msa0329350 | 0.829228 | 5.789852e-55 | -8.615850e-47 |
| Msa0073460 | Msa0340810 | 0.814089 | 1.839609e-51 | -8.615850e-47 |
| Msa0073460 | Msa0379550 | 0.809942 | 1.474599e-50 | -8.615850e-47 |
| Msa0073460 | Msa0399340 | 0.801902 | 7.232514e-49 | -8.615850e-47 |
| Msa0073460 | Msa0402330 | 0.802610 | 5.170314e-49 | -8.615850e-47 |
| Msa0073460 | Msa0426330 | 0.832963 | 7.003063e-56 | -8.615850e-47 |
| Msa0073460 | Msa0433360 | 0.824621 | 7.309803e-54 | -8.615850e-47 |
| Msa0073460 | Msa0464900 | 0.817280 | 3.579933e-52 | -8.615850e-47 |
| Msa0073460 | Msa0475410 | 0.818556 | 1.843275e-52 | -8.615850e-47 |
| Msa0073460 | Msa0477080 | 0.820771 | 5.752389e-53 | -8.615850e-47 |
| Msa0073460 | Msa0484780 | 0.808563 | 2.912820e-50 | -8.615850e-47 |
| Msa0073460 | Msa0513440 | 0.806636 | 7.469740e-50 | -8.615850e-47 |
| Msa0073460 | Msa0555200 | 0.881080 | 3.229019e-70 | -8.615850e-47 |
| Msa0073460 | Msa0556790 | 0.827067 | 1.919946e-54 | -8.615850e-47 |
| Msa0073460 | Msa0556860 | 0.837161 | 6.118586e-57 | -8.615850e-47 |
| Msa0073460 | Msa0568820 | 0.813798 | 2.132555e-51 | -8.615850e-47 |
| Msa0073460 | Msa0575470 | 0.803255 | 3.803099e-49 | -8.615850e-47 |
| Msa0073460 | Msa0577220 | 0.806912 | 6.532485e-50 | -8.615850e-47 |
| Msa0073460 | Msa0587190 | 0.800099 | 1.689370e-48 | -8.615850e-47 |
| Msa0073460 | Msa0588240 | 0.803492 | 3.397061e-49 | -8.615850e-47 |
| Msa0073460 | Msa0608710 | 0.865087 | 7.612806e-65 | -8.615850e-47 |
| Msa0073460 | Msa0619070 | 0.817029 | 4.076060e-52 | -8.615850e-47 |
| Msa0073460 | Msa0623700 | 0.807451 | 5.021806e-50 | -8.615850e-47 |
| Msa0073460 | Msa0628290 | 0.851279 | 9.843622e-61 | -8.615850e-47 |
| Msa0073460 | Msa0628740 | 0.800074 | 1.709182e-48 | -8.615850e-47 |
| Msa0073460 | Msa0666140 | 0.803231 | 3.847571e-49 | -8.615850e-47 |
| Msa0073460 | Msa0679550 | 0.811218 | 7.814129e-51 | -8.615850e-47 |
| Msa0073460 | Msa0686080 | 0.814152 | 1.781667e-51 | -8.615850e-47 |
| Msa0073460 | Msa0694840 | 0.831581 | 1.539557e-55 | -8.615850e-47 |
| Msa0073460 | Msa0714960 | 0.808440 | 3.094632e-50 | -8.615850e-47 |
| Msa0073460 | Msa0715110 | 0.811226 | 7.785323e-51 | -8.615850e-47 |
| Msa0073460 | Msa0731180 | 0.805123 | 1.553619e-49 | -8.615850e-47 |
| Msa0073460 | Msa0757050 | 0.803971 | 2.701890e-49 | -8.615850e-47 |
| Msa0073460 | Msa0790660 | -0.801400 | 9.168373e-49 | -8.615850e-47 |
| Msa0073460 | Msa0793390 | 0.812567 | 3.973505e-51 | -8.615850e-47 |
| Msa0073460 | Msa0798030 | 0.800834 | 1.196400e-48 | -8.615850e-47 |
| Msa0073460 | Msa0823500 | 0.810227 | 1.280334e-50 | -8.615850e-47 |
| Msa0073460 | Msa0827280 | 0.816487 | 5.391208e-52 | -8.615850e-47 |
| Msa0073460 | Msa0862500 | 0.810031 | 1.411006e-50 | -8.615850e-47 |
| Msa0073460 | Msa0869120 | 0.845002 | 5.327729e-59 | -8.615850e-47 |
| Msa0073460 | Msa0899230 | 0.821098 | 4.836963e-53 | -8.615850e-47 |
| Msa0073460 | Msa0908170 | 0.810686 | 1.018679e-50 | -8.615850e-47 |
| Msa0073460 | Msa0910980 | -0.805218 | 1.484578e-49 | -8.615850e-47 |
| Msa0073460 | Msa0924150 | -0.800478 | 1.414606e-48 | -8.615850e-47 |
| Msa0073460 | Msa0933230 | 0.806589 | 7.643200e-50 | -8.615850e-47 |
| Msa0073460 | Msa0933290 | 0.814009 | 1.916349e-51 | -8.615850e-47 |
| Msa0073460 | Msa0933310 | 0.821445 | 4.023557e-53 | -8.615850e-47 |
| Msa0073460 | Msa0945840 | 0.820346 | 7.200758e-53 | -8.615850e-47 |
| Msa0073460 | Msa0960160 | 0.830152 | 3.450150e-55 | -8.615850e-47 |
| Msa0073460 | Msa0963090 | -0.817211 | 3.709501e-52 | -8.615850e-47 |
| Msa0073460 | Msa0967370 | 0.813516 | 2.460166e-51 | -8.615850e-47 |
| Msa0073460 | Msa0971090 | 0.814953 | 1.184971e-51 | -8.615850e-47 |
| Msa0073460 | Msa0974630 | 0.806727 | 7.146645e-50 | -8.615850e-47 |
| Msa0073460 | Msa0999040 | 0.819856 | 9.324432e-53 | -8.615850e-47 |
| Msa0073460 | Msa1039880 | 0.807921 | 3.990885e-50 | -8.615850e-47 |
| Msa0073460 | Msa1040890 | 0.816584 | 5.129871e-52 | -8.615850e-47 |
| Msa0073460 | Msa1050200 | 0.803952 | 2.726956e-49 | -8.615850e-47 |
| Msa0073460 | Msa1089840 | 0.816302 | 5.930856e-52 | -8.615850e-47 |
| Msa0073460 | Msa1092090 | 0.809799 | 1.582311e-50 | -8.615850e-47 |
| Msa0073460 | Msa1100720 | 0.809274 | 2.052307e-50 | -8.615850e-47 |
| Msa0073460 | Msa1152520 | 0.806394 | 8.401481e-50 | -8.615850e-47 |
| Msa0073460 | Msa1201560 | 0.806984 | 6.306147e-50 | -8.615850e-47 |
| Msa0073460 | Msa1203880 | 0.804031 | 2.625216e-49 | -8.615850e-47 |
| Msa0073460 | Msa1233500 | 0.824722 | 6.921438e-54 | -8.615850e-47 |
| Msa0073460 | Msa1249240 | 0.800898 | 1.160988e-48 | -8.615850e-47 |
| Msa0073460 | Msa1254710 | 0.804154 | 2.474921e-49 | -8.615850e-47 |
| Msa0073460 | Msa1255040 | -0.828555 | 8.421867e-55 | -8.615850e-47 |
| Msa0073460 | Msa1269300 | 0.821308 | 4.326591e-53 | -8.615850e-47 |
| Msa0073460 | Msa1276440 | 0.804109 | 2.529190e-49 | -8.615850e-47 |
| Msa0073460 | Msa1303160 | 0.812980 | 3.225517e-51 | -8.615850e-47 |
| Msa0073460 | Msa1331350 | 0.803665 | 3.128230e-49 | -8.615850e-47 |
| Msa0073460 | Msa1358610 | -0.805934 | 1.050442e-49 | -8.615850e-47 |
| Msa0073460 | Msa1371090 | 0.808240 | 3.413704e-50 | -8.615850e-47 |
| Msa0073460 | Msa1371240 | 0.836725 | 7.908361e-57 | -8.615850e-47 |
| Msa0073460 | Msa1388860 | 0.802675 | 5.013445e-49 | -8.615850e-47 |
| Msa0073460 | Msa1444740 | 0.846775 | 1.756794e-59 | -8.615850e-47 |
| Msa0073460 | Msa1461280 | 0.834890 | 2.307505e-56 | -8.615850e-47 |
| Msa0073460 | Msa1463600 | 0.809872 | 1.526159e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0073460 | MtrunA17_Chr1g0180631 | 94.379 | 338 | 14 | 1 | 1 | 338 | 1 | 333 | 0.0 | 511 |
| Msa0073460 | MtrunA17_Chr7g0264601 | 46.686 | 347 | 134 | 9 | 31 | 338 | 15 | 349 | 3.04e-76 | 238 |
| Msa0073460 | MtrunA17_Chr4g0028461 | 39.739 | 307 | 134 | 3 | 32 | 338 | 69 | 324 | 1.14e-51 | 174 |
| Msa0073460 | MtrunA17_Chr2g0327311 | 41.081 | 185 | 88 | 4 | 28 | 206 | 64 | 233 | 7.04e-36 | 132 |
| Msa0073460 | MtrunA17_Chr8g0386231 | 40.556 | 180 | 94 | 2 | 27 | 205 | 49 | 216 | 1.80e-26 | 107 |
| Msa0073460 | MtrunA17_Chr3g0132051 | 33.143 | 175 | 100 | 2 | 31 | 204 | 36 | 194 | 1.48e-22 | 95.1 |
| Msa0073460 | MtrunA17_Chr3g0094841 | 31.313 | 198 | 111 | 3 | 31 | 226 | 28 | 202 | 1.98e-22 | 94.4 |
| Msa0073460 | MtrunA17_Chr5g0429111 | 32.759 | 174 | 94 | 3 | 32 | 205 | 56 | 206 | 3.40e-22 | 95.1 |
| Msa0073460 | MtrunA17_Chr8g0337951 | 26.144 | 306 | 153 | 7 | 32 | 337 | 32 | 264 | 4.04e-20 | 88.6 |
| Msa0073460 | MtrunA17_Chr3g0132061 | 30.682 | 176 | 106 | 2 | 31 | 205 | 36 | 196 | 5.13e-20 | 89.0 |
| Msa0073460 | MtrunA17_Chr3g0128091 | 27.160 | 324 | 147 | 8 | 28 | 337 | 35 | 283 | 5.25e-20 | 88.6 |
| Msa0073460 | MtrunA17_Chr2g0290471 | 33.520 | 179 | 103 | 3 | 28 | 205 | 33 | 196 | 5.20e-19 | 85.5 |
| Msa0073460 | MtrunA17_Chr6g0454851 | 48.485 | 66 | 34 | 0 | 28 | 93 | 17 | 82 | 2.35e-12 | 68.2 |
| Msa0073460 | MtrunA17_Chr4g0001151 | 35.075 | 134 | 71 | 2 | 31 | 163 | 170 | 288 | 8.89e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0073460 | AT5G03380.1 | 39.851 | 404 | 165 | 12 | 1 | 338 | 1 | 392 | 5.64e-60 | 197 |
| Msa0073460 | AT5G03380.2 | 40.431 | 371 | 148 | 11 | 34 | 338 | 2 | 365 | 5.34e-58 | 192 |
| Msa0073460 | AT5G03380.2 | 42.391 | 92 | 47 | 2 | 144 | 231 | 1 | 90 | 4.58e-11 | 63.9 |
| Msa0073460 | AT2G36950.1 | 41.713 | 362 | 128 | 13 | 32 | 338 | 53 | 386 | 2.52e-54 | 182 |
| Msa0073460 | AT2G28090.1 | 41.530 | 183 | 87 | 3 | 25 | 206 | 25 | 188 | 1.07e-29 | 114 |
| Msa0073460 | AT3G02960.1 | 32.386 | 176 | 96 | 4 | 31 | 205 | 38 | 191 | 2.71e-27 | 107 |
| Msa0073460 | AT1G29000.1 | 31.818 | 176 | 107 | 1 | 32 | 207 | 18 | 180 | 2.78e-22 | 95.1 |
| Msa0073460 | AT1G29000.2 | 31.818 | 176 | 107 | 1 | 32 | 207 | 18 | 180 | 2.78e-22 | 95.1 |
| Msa0073460 | AT5G24580.4 | 28.571 | 175 | 103 | 1 | 32 | 206 | 59 | 211 | 8.16e-19 | 86.3 |
| Msa0073460 | AT5G24580.1 | 28.571 | 175 | 103 | 1 | 32 | 206 | 59 | 211 | 8.16e-19 | 86.3 |
| Msa0073460 | AT5G24580.2 | 28.571 | 175 | 103 | 1 | 32 | 206 | 58 | 210 | 8.88e-19 | 85.9 |
| Msa0073460 | AT5G50740.2 | 39.416 | 137 | 67 | 2 | 31 | 166 | 29 | 150 | 1.62e-16 | 76.3 |
| Msa0073460 | AT5G50740.4 | 39.416 | 137 | 67 | 2 | 31 | 166 | 36 | 157 | 1.96e-16 | 76.3 |
| Msa0073460 | AT5G24580.3 | 26.857 | 175 | 103 | 2 | 32 | 206 | 59 | 208 | 1.39e-15 | 76.6 |
| Msa0073460 | AT5G27690.1 | 34.951 | 103 | 59 | 2 | 108 | 210 | 5 | 99 | 5.17e-11 | 63.5 |
Find 100 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTGAGGAGGTGGATTATT+AGG | 0.166312 | 1_2:+47145956 | None:intergenic |
| TTCTTCTCTTCTTCTTTCTT+AGG | 0.200920 | 1_2:+47146292 | None:intergenic |
| AATTAATTAATTACCTCTTT+AGG | 0.228053 | 1_2:+47146744 | None:intergenic |
| CGTTAAATTGCAAGAGAAAT+TGG | 0.249649 | 1_2:-47146925 | Msa0073460:CDS |
| CAACATTATATGGAGAATAA+TGG | 0.281211 | 1_2:-47146046 | Msa0073460:CDS |
| TAATAATAATCAACATTATA+TGG | 0.312578 | 1_2:-47146056 | Msa0073460:CDS |
| CAATTTCTCTTGCAATTTAA+CGG | 0.317272 | 1_2:+47146926 | None:intergenic |
| TCCTTCATCAGCTTTCTTCT+CGG | 0.317840 | 1_2:+47147219 | None:intergenic |
| AGAGTGGGGAGAGAAGTATA+AGG | 0.321545 | 1_2:+47147487 | None:intergenic |
| CCATGTGTGTGATTGGTAAT+AGG | 0.370399 | 1_2:+47147405 | None:intergenic |
| TACCTCACCCACCGTTTCAT+TGG | 0.371572 | 1_2:-47147527 | Msa0073460:five_prime_UTR |
| AACATTATATGGAGAATAAT+GGG | 0.379007 | 1_2:-47146045 | Msa0073460:CDS |
| GAAGGTGGAGGTTAATAAAA+TGG | 0.389488 | 1_2:-47146185 | Msa0073460:CDS |
| TGGAGAATCCTGTCCAGATT+TGG | 0.391214 | 1_2:-47145672 | Msa0073460:three_prime_UTR |
| TCCTCAGCTTTCTTCTCCTC+CGG | 0.392060 | 1_2:+47146804 | None:intergenic |
| GTGAGGTAATGGGATTGGTT+AGG | 0.394881 | 1_2:+47147542 | None:intergenic |
| TGAAACGGTGGGTGAGGTAA+TGG | 0.399876 | 1_2:+47147531 | None:intergenic |
| AGATACTCTATCAAATCCTT+TGG | 0.402024 | 1_2:+47146352 | None:intergenic |
| TGAAGCTAGATCTGCCTTAA+CGG | 0.404665 | 1_2:+47146980 | None:intergenic |
| TCAAACAAAGTGACAGTTAC+CGG | 0.410265 | 1_2:-47146960 | Msa0073460:CDS |
| CCAAATCCTTGTCTCCATCT+AGG | 0.412236 | 1_2:+47146398 | None:intergenic |
| AGACGCCGGAGCCGAGAAAC+CGG | 0.413190 | 1_2:-47146853 | Msa0073460:CDS |
| TGAGGTAATGGGATTGGTTA+GGG | 0.418479 | 1_2:+47147543 | None:intergenic |
| GTTGAAACGGCGAACCTAGA+TGG | 0.423969 | 1_2:-47146412 | Msa0073460:CDS |
| TTTCTCTTCCAAATCTGGAC+AGG | 0.432944 | 1_2:+47145664 | None:intergenic |
| CCTAGATGGAGACAAGGATT+TGG | 0.435138 | 1_2:-47146398 | Msa0073460:CDS |
| TCTGAGGAGGTGGATTATTA+GGG | 0.436820 | 1_2:+47145957 | None:intergenic |
| ACCTCTCCCATGTGTGTGAT+TGG | 0.439873 | 1_2:+47147398 | None:intergenic |
| AAATATTAGACTGGCTCAGC+TGG | 0.440021 | 1_2:-47145696 | Msa0073460:three_prime_UTR |
| GAGTGGGGAGAGAAGTATAA+GGG | 0.443777 | 1_2:+47147488 | None:intergenic |
| GCAGGAGCAGGAGCAGGAAC+AGG | 0.449522 | 1_2:+47147178 | None:intergenic |
| TTCTCTTCTTCTTTCTTAGG+TGG | 0.449970 | 1_2:+47146295 | None:intergenic |
| GAAACGGTGGGTGAGGTAAT+GGG | 0.452517 | 1_2:+47147532 | None:intergenic |
| ATTAGACTGGCTCAGCTGGC+TGG | 0.453511 | 1_2:-47145692 | Msa0073460:three_prime_UTR |
| CGGTGGAGATGCGGCGAAGG+TGG | 0.453941 | 1_2:-47146200 | Msa0073460:CDS |
| TTTAACGGCGTCAAATTTAC+CGG | 0.454292 | 1_2:+47146941 | None:intergenic |
| CTCCGCCGGTTTCTCGGCTC+CGG | 0.455657 | 1_2:+47146848 | None:intergenic |
| AAGTCGAGTTTGTAAACAAC+AGG | 0.458834 | 1_2:+47147154 | None:intergenic |
| TGAAAAGAAAGAGAAAGAAA+AGG | 0.465817 | 1_2:-47146251 | Msa0073460:CDS |
| TTCAGGTGTTGAAACCGTTA+AGG | 0.477177 | 1_2:-47146994 | Msa0073460:intron |
| GGGAGAGAAGTATAAGGGAG+AGG | 0.494183 | 1_2:+47147493 | None:intergenic |
| AAGTAGTAACTATGCTGGTA+TGG | 0.497316 | 1_2:-47146116 | Msa0073460:CDS |
| GAAGAAAGAAGAGAAGAAAG+TGG | 0.498576 | 1_2:-47146224 | Msa0073460:CDS |
| AACCAATGAAACGGTGGGTG+AGG | 0.500842 | 1_2:+47147525 | None:intergenic |
| CACATAAGAGAACAAGCATT+GGG | 0.508286 | 1_2:+47145917 | None:intergenic |
| GCTCCGATGTATTATTATGA+AGG | 0.510924 | 1_2:-47146142 | Msa0073460:CDS |
| TGGAGATGCGGCGAAGGTGG+AGG | 0.511085 | 1_2:-47146197 | Msa0073460:CDS |
| ACAGGAGCAGGAGCAGGAGC+AGG | 0.518033 | 1_2:+47147172 | None:intergenic |
| TTTCATCATCAACCTGGGTA+TGG | 0.520569 | 1_2:-47146088 | Msa0073460:CDS |
| TATTAGAATTGTGGTGTTGT+GGG | 0.521062 | 1_2:+47147438 | None:intergenic |
| TAAACAACAGGAGCAGGAGC+AGG | 0.525527 | 1_2:+47147166 | None:intergenic |
| AATATATATAACCAATGAAA+CGG | 0.528489 | 1_2:+47147516 | None:intergenic |
| TCACTGAACATCTGAGGAGG+TGG | 0.529922 | 1_2:+47145947 | None:intergenic |
| TTATTAGGGTGCATGTAATA+CGG | 0.531642 | 1_2:+47145971 | None:intergenic |
| ACCGAGAAGAAAGCTGATGA+AGG | 0.540526 | 1_2:-47147220 | Msa0073460:CDS |
| GGTACTTGAGGTGGCTGCAT+AGG | 0.542416 | 1_2:+47145992 | None:intergenic |
| TTATTAAACAGGAGTTGAAA+CGG | 0.544576 | 1_2:-47146425 | Msa0073460:intron |
| TATAGAGATAAATATTAGAC+TGG | 0.545083 | 1_2:-47145705 | Msa0073460:three_prime_UTR |
| GGTGGGTGAGGTAATGGGAT+TGG | 0.546089 | 1_2:+47147537 | None:intergenic |
| CATCAACCTGGGTATGGTGG+TGG | 0.547203 | 1_2:-47146082 | Msa0073460:CDS |
| AAAGAAAGAGAAAGAAAAGG+CGG | 0.548738 | 1_2:-47146248 | Msa0073460:CDS |
| CGAAGTGCTCGTCATTTCGC+TGG | 0.552259 | 1_2:-47147100 | Msa0073460:intron |
| AGTTTGTAAACAACAGGAGC+AGG | 0.553378 | 1_2:+47147160 | None:intergenic |
| GGTCAAAGTAGTAACTATGC+TGG | 0.556121 | 1_2:-47146121 | Msa0073460:CDS |
| AAGGATTTGGTAACAGTGAA+AGG | 0.556405 | 1_2:-47146385 | Msa0073460:CDS |
| TATGTTAGATATTAGAATTG+TGG | 0.557101 | 1_2:+47147429 | None:intergenic |
| GGACGGTGGAGATGCGGCGA+AGG | 0.557262 | 1_2:-47146203 | Msa0073460:CDS |
| TCACATAAGAGAACAAGCAT+TGG | 0.558548 | 1_2:+47145916 | None:intergenic |
| GGCTGAGAAAGCTAAGAAGA+AGG | 0.559878 | 1_2:-47146904 | Msa0073460:CDS |
| GATCAATTTCATCATCAACC+TGG | 0.560641 | 1_2:-47146094 | Msa0073460:CDS |
| CCTATTACCAATCACACACA+TGG | 0.561709 | 1_2:-47147405 | Msa0073460:exon |
| AGAATCATTATGAAGTTCAA+AGG | 0.563915 | 1_2:-47146581 | Msa0073460:intron |
| TAATACATCGGAGCTTGTAT+CGG | 0.568277 | 1_2:+47146151 | None:intergenic |
| GAAGAGAAGAAAGTGGACGG+TGG | 0.569092 | 1_2:-47146217 | Msa0073460:CDS |
| GAAAGTGGACGGTGGAGATG+CGG | 0.575166 | 1_2:-47146209 | Msa0073460:CDS |
| ATATTAGAATTGTGGTGTTG+TGG | 0.580648 | 1_2:+47147437 | None:intergenic |
| CATCATCAACCTGGGTATGG+TGG | 0.581791 | 1_2:-47146085 | Msa0073460:CDS |
| GAAAGGAACAATGGAACCAA+AGG | 0.586961 | 1_2:-47146368 | Msa0073460:CDS |
| TATATAACCAATGAAACGGT+GGG | 0.588620 | 1_2:+47147520 | None:intergenic |
| AAAGAAGAGAAGAAAGTGGA+CGG | 0.599132 | 1_2:-47146220 | Msa0073460:CDS |
| ATCAATTTCATCATCAACCT+GGG | 0.600796 | 1_2:-47146093 | Msa0073460:CDS |
| GGGTATATGAATATGAATCA+TGG | 0.602668 | 1_2:-47146025 | Msa0073460:CDS |
| GGTAACAGTGAAAGGAACAA+TGG | 0.605375 | 1_2:-47146377 | Msa0073460:CDS |
| CGCCGGAGCCGAGAAACCGG+CGG | 0.606076 | 1_2:-47146850 | Msa0073460:CDS |
| ACCAATCACACACATGGGAG+AGG | 0.606723 | 1_2:-47147399 | Msa0073460:intron |
| ATGAATATGAATCATGGTGG+TGG | 0.613279 | 1_2:-47146019 | Msa0073460:CDS |
| TGCATGTAATACGGTACTTG+AGG | 0.613430 | 1_2:+47145980 | None:intergenic |
| TTCTCATCACTGAACATCTG+AGG | 0.619062 | 1_2:+47145941 | None:intergenic |
| ATATATAACCAATGAAACGG+TGG | 0.620687 | 1_2:+47147519 | None:intergenic |
| AAACTCGACTTACATTGTGA+AGG | 0.624408 | 1_2:-47147142 | Msa0073460:CDS |
| TGACCTTCATAATAATACAT+CGG | 0.624646 | 1_2:+47146139 | None:intergenic |
| TTATAACCACCACCATACCC+AGG | 0.654821 | 1_2:+47146076 | None:intergenic |
| TCATCACTGAACATCTGAGG+AGG | 0.657828 | 1_2:+47145944 | None:intergenic |
| ATGTAATACGGTACTTGAGG+TGG | 0.661458 | 1_2:+47145983 | None:intergenic |
| ACCGGAGGAGAAGAAAGCTG+AGG | 0.672813 | 1_2:-47146805 | Msa0073460:CDS |
| AGTGTGTATACACTTATGCA+CGG | 0.673850 | 1_2:-47145878 | Msa0073460:three_prime_UTR |
| AAGATCAGATTGCACTGTGA+CGG | 0.678394 | 1_2:-47146623 | Msa0073460:CDS |
| GGCGAACCTAGATGGAGACA+AGG | 0.682048 | 1_2:-47146404 | Msa0073460:CDS |
| CTATTACCAATCACACACAT+GGG | 0.698797 | 1_2:-47147404 | Msa0073460:exon |
| TATATGAATATGAATCATGG+TGG | 0.739870 | 1_2:-47146022 | Msa0073460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTAATTAATACAAAGT+CGG | + | chr1_2:47146394-47146413 | None:intergenic | 10.0% |
| !! | TAATAATAATCAACATTATA+TGG | - | chr1_2:47147016-47147035 | Msa0073460:intron | 10.0% |
| !!! | AAATTTTGTTTATTTGTTTA+TGG | - | chr1_2:47147524-47147543 | Msa0073460:five_prime_UTR | 10.0% |
| !! | AAATTTAATTAATACAAAGT+CGG | + | chr1_2:47146394-47146413 | None:intergenic | 10.0% |
| !! | TAATAATAATCAACATTATA+TGG | - | chr1_2:47147016-47147035 | Msa0073460:intron | 10.0% |
| !!! | AAATTTTGTTTATTTGTTTA+TGG | - | chr1_2:47147524-47147543 | Msa0073460:five_prime_UTR | 10.0% |
| !! | AATATATATAACCAATGAAA+CGG | + | chr1_2:47145559-47145578 | None:intergenic | 15.0% |
| !! | ATATACTAATACTAATGAAA+AGG | + | chr1_2:47145717-47145736 | None:intergenic | 15.0% |
| !! | AGAATATTCATTAACAAATT+TGG | - | chr1_2:47146049-47146068 | Msa0073460:CDS | 15.0% |
| !! | AATTAATTAATTACCTCTTT+AGG | + | chr1_2:47146331-47146350 | None:intergenic | 15.0% |
| !!! | ATTTATTAATTTTCAGAGTA+CGG | - | chr1_2:47146418-47146437 | Msa0073460:intron | 15.0% |
| !!! | GGTTATTTTATTTGAAATTT+AGG | + | chr1_2:47146527-47146546 | None:intergenic | 15.0% |
| !! | AATATATATAACCAATGAAA+CGG | + | chr1_2:47145559-47145578 | None:intergenic | 15.0% |
| !! | ATATACTAATACTAATGAAA+AGG | + | chr1_2:47145717-47145736 | None:intergenic | 15.0% |
| !! | AGAATATTCATTAACAAATT+TGG | - | chr1_2:47146049-47146068 | Msa0073460:CDS | 15.0% |
| !! | AATTAATTAATTACCTCTTT+AGG | + | chr1_2:47146331-47146350 | None:intergenic | 15.0% |
| !!! | ATTTATTAATTTTCAGAGTA+CGG | - | chr1_2:47146418-47146437 | Msa0073460:intron | 15.0% |
| !!! | GGTTATTTTATTTGAAATTT+AGG | + | chr1_2:47146527-47146546 | None:intergenic | 15.0% |
| !! | TATGTTAGATATTAGAATTG+TGG | + | chr1_2:47145646-47145665 | None:intergenic | 20.0% |
| !!! | AACAAATTTGGAATATATTC+AGG | - | chr1_2:47146061-47146080 | Msa0073460:CDS | 20.0% |
| !! | AACATTATATGGAGAATAAT+GGG | - | chr1_2:47147027-47147046 | Msa0073460:intron | 20.0% |
| !!! | CATATAGAGAAATTTTATGT+TGG | - | chr1_2:47147326-47147345 | Msa0073460:intron | 20.0% |
| !! | TATAGAGATAAATATTAGAC+TGG | - | chr1_2:47147367-47147386 | Msa0073460:intron | 20.0% |
| !! | TATGTTAGATATTAGAATTG+TGG | + | chr1_2:47145646-47145665 | None:intergenic | 20.0% |
| !!! | AACAAATTTGGAATATATTC+AGG | - | chr1_2:47146061-47146080 | Msa0073460:CDS | 20.0% |
| !! | AACATTATATGGAGAATAAT+GGG | - | chr1_2:47147027-47147046 | Msa0073460:intron | 20.0% |
| !!! | CATATAGAGAAATTTTATGT+TGG | - | chr1_2:47147326-47147345 | Msa0073460:intron | 20.0% |
| !! | TATAGAGATAAATATTAGAC+TGG | - | chr1_2:47147367-47147386 | Msa0073460:intron | 20.0% |
| ! | AGGAATATTGAATATGCTAT+TGG | + | chr1_2:47145750-47145769 | None:intergenic | 25.0% |
| ! | AATAGCATATTCAATATTCC+TGG | - | chr1_2:47145749-47145768 | Msa0073460:three_prime_UTR | 25.0% |
| ! | ACACAAAAAGAAAATATTCC+AGG | + | chr1_2:47145770-47145789 | None:intergenic | 25.0% |
| ! | CAATTTCTCTTGCAATTTAA+CGG | + | chr1_2:47146149-47146168 | None:intergenic | 25.0% |
| ! | AGAATCATTATGAAGTTCAA+AGG | - | chr1_2:47146491-47146510 | Msa0073460:intron | 25.0% |
| !! | TGATGATGATGTTATTAAAC+AGG | - | chr1_2:47146636-47146655 | Msa0073460:CDS | 25.0% |
| ! | TTATTAAACAGGAGTTGAAA+CGG | - | chr1_2:47146647-47146666 | Msa0073460:intron | 25.0% |
| ! | TGAAAAGAAAGAGAAAGAAA+AGG | - | chr1_2:47146821-47146840 | Msa0073460:CDS | 25.0% |
| ! | TGACCTTCATAATAATACAT+CGG | + | chr1_2:47146936-47146955 | None:intergenic | 25.0% |
| ! | CAACATTATATGGAGAATAA+TGG | - | chr1_2:47147026-47147045 | Msa0073460:intron | 25.0% |
| ! | TATATGAATATGAATCATGG+TGG | - | chr1_2:47147050-47147069 | Msa0073460:intron | 25.0% |
| ! | AGGAATATTGAATATGCTAT+TGG | + | chr1_2:47145750-47145769 | None:intergenic | 25.0% |
| ! | AATAGCATATTCAATATTCC+TGG | - | chr1_2:47145749-47145768 | Msa0073460:three_prime_UTR | 25.0% |
| ! | ACACAAAAAGAAAATATTCC+AGG | + | chr1_2:47145770-47145789 | None:intergenic | 25.0% |
| ! | CAATTTCTCTTGCAATTTAA+CGG | + | chr1_2:47146149-47146168 | None:intergenic | 25.0% |
| ! | AGAATCATTATGAAGTTCAA+AGG | - | chr1_2:47146491-47146510 | Msa0073460:intron | 25.0% |
| !! | TGATGATGATGTTATTAAAC+AGG | - | chr1_2:47146636-47146655 | Msa0073460:CDS | 25.0% |
| ! | TTATTAAACAGGAGTTGAAA+CGG | - | chr1_2:47146647-47146666 | Msa0073460:intron | 25.0% |
| ! | TGAAAAGAAAGAGAAAGAAA+AGG | - | chr1_2:47146821-47146840 | Msa0073460:CDS | 25.0% |
| ! | TGACCTTCATAATAATACAT+CGG | + | chr1_2:47146936-47146955 | None:intergenic | 25.0% |
| ! | CAACATTATATGGAGAATAA+TGG | - | chr1_2:47147026-47147045 | Msa0073460:intron | 25.0% |
| ! | TATATGAATATGAATCATGG+TGG | - | chr1_2:47147050-47147069 | Msa0073460:intron | 25.0% |
| TATATAACCAATGAAACGGT+GGG | + | chr1_2:47145555-47145574 | None:intergenic | 30.0% | |
| ATATATAACCAATGAAACGG+TGG | + | chr1_2:47145556-47145575 | None:intergenic | 30.0% | |
| ! | AGATTTTGTGTTTGAAGAGT+GGG | + | chr1_2:47145603-47145622 | None:intergenic | 30.0% |
| ! | AAGATTTTGTGTTTGAAGAG+TGG | + | chr1_2:47145604-47145623 | None:intergenic | 30.0% |
| !! | TATTAGAATTGTGGTGTTGT+GGG | + | chr1_2:47145637-47145656 | None:intergenic | 30.0% |
| ! | ATATTAGAATTGTGGTGTTG+TGG | + | chr1_2:47145638-47145657 | None:intergenic | 30.0% |
| CGTTAAATTGCAAGAGAAAT+TGG | - | chr1_2:47146147-47146166 | Msa0073460:CDS | 30.0% | |
| !!! | TCTTTAGGTTTTTTCTCTTC+AGG | + | chr1_2:47146316-47146335 | None:intergenic | 30.0% |
| TGAAGAGAAAAAACCTAAAG+AGG | - | chr1_2:47146315-47146334 | Msa0073460:CDS | 30.0% | |
| ! | TATTAATTTTCAGAGTACGG+TGG | - | chr1_2:47146421-47146440 | Msa0073460:intron | 30.0% |
| AGATACTCTATCAAATCCTT+TGG | + | chr1_2:47146723-47146742 | None:intergenic | 30.0% | |
| TTCTTCTCTTCTTCTTTCTT+AGG | + | chr1_2:47146783-47146802 | None:intergenic | 30.0% | |
| AGAAGAGAAGAAAGAAAAAG+AGG | - | chr1_2:47146791-47146810 | Msa0073460:CDS | 30.0% | |
| GAAGAGAAGAAAGAAAAAGA+GGG | - | chr1_2:47146792-47146811 | Msa0073460:CDS | 30.0% | |
| AAAGAAAGAGAAAGAAAAGG+CGG | - | chr1_2:47146824-47146843 | Msa0073460:CDS | 30.0% | |
| ATCAATTTCATCATCAACCT+GGG | - | chr1_2:47146979-47146998 | Msa0073460:CDS | 30.0% | |
| GGGTATATGAATATGAATCA+TGG | - | chr1_2:47147047-47147066 | Msa0073460:intron | 30.0% | |
| TTATTAGGGTGCATGTAATA+CGG | + | chr1_2:47147104-47147123 | None:intergenic | 30.0% | |
| ! | TTCTTTTTCTCTTCCAAATC+TGG | + | chr1_2:47147416-47147435 | None:intergenic | 30.0% |
| TATATAACCAATGAAACGGT+GGG | + | chr1_2:47145555-47145574 | None:intergenic | 30.0% | |
| ATATATAACCAATGAAACGG+TGG | + | chr1_2:47145556-47145575 | None:intergenic | 30.0% | |
| ! | AGATTTTGTGTTTGAAGAGT+GGG | + | chr1_2:47145603-47145622 | None:intergenic | 30.0% |
| ! | AAGATTTTGTGTTTGAAGAG+TGG | + | chr1_2:47145604-47145623 | None:intergenic | 30.0% |
| !! | TATTAGAATTGTGGTGTTGT+GGG | + | chr1_2:47145637-47145656 | None:intergenic | 30.0% |
| ! | ATATTAGAATTGTGGTGTTG+TGG | + | chr1_2:47145638-47145657 | None:intergenic | 30.0% |
| CGTTAAATTGCAAGAGAAAT+TGG | - | chr1_2:47146147-47146166 | Msa0073460:CDS | 30.0% | |
| !!! | TCTTTAGGTTTTTTCTCTTC+AGG | + | chr1_2:47146316-47146335 | None:intergenic | 30.0% |
| TGAAGAGAAAAAACCTAAAG+AGG | - | chr1_2:47146315-47146334 | Msa0073460:CDS | 30.0% | |
| ! | TATTAATTTTCAGAGTACGG+TGG | - | chr1_2:47146421-47146440 | Msa0073460:intron | 30.0% |
| AGATACTCTATCAAATCCTT+TGG | + | chr1_2:47146723-47146742 | None:intergenic | 30.0% | |
| TTCTTCTCTTCTTCTTTCTT+AGG | + | chr1_2:47146783-47146802 | None:intergenic | 30.0% | |
| AGAAGAGAAGAAAGAAAAAG+AGG | - | chr1_2:47146791-47146810 | Msa0073460:CDS | 30.0% | |
| GAAGAGAAGAAAGAAAAAGA+GGG | - | chr1_2:47146792-47146811 | Msa0073460:CDS | 30.0% | |
| AAAGAAAGAGAAAGAAAAGG+CGG | - | chr1_2:47146824-47146843 | Msa0073460:CDS | 30.0% | |
| ATCAATTTCATCATCAACCT+GGG | - | chr1_2:47146979-47146998 | Msa0073460:CDS | 30.0% | |
| GGGTATATGAATATGAATCA+TGG | - | chr1_2:47147047-47147066 | Msa0073460:intron | 30.0% | |
| TTATTAGGGTGCATGTAATA+CGG | + | chr1_2:47147104-47147123 | None:intergenic | 30.0% | |
| ! | TTCTTTTTCTCTTCCAAATC+TGG | + | chr1_2:47147416-47147435 | None:intergenic | 30.0% |
| ! | GATTTTGTGTTTGAAGAGTG+GGG | + | chr1_2:47145602-47145621 | None:intergenic | 35.0% |
| CTATTACCAATCACACACAT+GGG | - | chr1_2:47145668-47145687 | Msa0073460:three_prime_UTR | 35.0% | |
| AAGTCGAGTTTGTAAACAAC+AGG | + | chr1_2:47145921-47145940 | None:intergenic | 35.0% | |
| AAACTCGACTTACATTGTGA+AGG | - | chr1_2:47145930-47145949 | Msa0073460:CDS | 35.0% | |
| TCAAACAAAGTGACAGTTAC+CGG | - | chr1_2:47146112-47146131 | Msa0073460:CDS | 35.0% | |
| TTTAACGGCGTCAAATTTAC+CGG | + | chr1_2:47146134-47146153 | None:intergenic | 35.0% | |
| AAAATCCGACGAGAAAAAAC+CGG | - | chr1_2:47146249-47146268 | Msa0073460:CDS | 35.0% | |
| !!! | TCTTCAGGTTTTTTCTCTTC+AGG | + | chr1_2:47146301-47146320 | None:intergenic | 35.0% |
| ! | AAGGATTTGGTAACAGTGAA+AGG | - | chr1_2:47146687-47146706 | Msa0073460:intron | 35.0% |
| TTCTCTTCTTCTTTCTTAGG+TGG | + | chr1_2:47146780-47146799 | None:intergenic | 35.0% | |
| GAAGAAAGAAGAGAAGAAAG+TGG | - | chr1_2:47146848-47146867 | Msa0073460:CDS | 35.0% | |
| AAAGAAGAGAAGAAAGTGGA+CGG | - | chr1_2:47146852-47146871 | Msa0073460:CDS | 35.0% | |
| GAAGGTGGAGGTTAATAAAA+TGG | - | chr1_2:47146887-47146906 | Msa0073460:CDS | 35.0% | |
| TAATACATCGGAGCTTGTAT+CGG | + | chr1_2:47146924-47146943 | None:intergenic | 35.0% | |
| GCTCCGATGTATTATTATGA+AGG | - | chr1_2:47146930-47146949 | Msa0073460:CDS | 35.0% | |
| AAGTAGTAACTATGCTGGTA+TGG | - | chr1_2:47146956-47146975 | Msa0073460:CDS | 35.0% | |
| GATCAATTTCATCATCAACC+TGG | - | chr1_2:47146978-47146997 | Msa0073460:CDS | 35.0% | |
| ATGAATATGAATCATGGTGG+TGG | - | chr1_2:47147053-47147072 | Msa0073460:intron | 35.0% | |
| CACATAAGAGAACAAGCATT+GGG | + | chr1_2:47147158-47147177 | None:intergenic | 35.0% | |
| TCACATAAGAGAACAAGCAT+TGG | + | chr1_2:47147159-47147178 | None:intergenic | 35.0% | |
| AGTGTGTATACACTTATGCA+CGG | - | chr1_2:47147194-47147213 | Msa0073460:CDS | 35.0% | |
| ! | GATTTTGTGTTTGAAGAGTG+GGG | + | chr1_2:47145602-47145621 | None:intergenic | 35.0% |
| CTATTACCAATCACACACAT+GGG | - | chr1_2:47145668-47145687 | Msa0073460:three_prime_UTR | 35.0% | |
| AAGTCGAGTTTGTAAACAAC+AGG | + | chr1_2:47145921-47145940 | None:intergenic | 35.0% | |
| AAACTCGACTTACATTGTGA+AGG | - | chr1_2:47145930-47145949 | Msa0073460:CDS | 35.0% | |
| TCAAACAAAGTGACAGTTAC+CGG | - | chr1_2:47146112-47146131 | Msa0073460:CDS | 35.0% | |
| TTTAACGGCGTCAAATTTAC+CGG | + | chr1_2:47146134-47146153 | None:intergenic | 35.0% | |
| AAAATCCGACGAGAAAAAAC+CGG | - | chr1_2:47146249-47146268 | Msa0073460:CDS | 35.0% | |
| !!! | TCTTCAGGTTTTTTCTCTTC+AGG | + | chr1_2:47146301-47146320 | None:intergenic | 35.0% |
| ! | AAGGATTTGGTAACAGTGAA+AGG | - | chr1_2:47146687-47146706 | Msa0073460:intron | 35.0% |
| TTCTCTTCTTCTTTCTTAGG+TGG | + | chr1_2:47146780-47146799 | None:intergenic | 35.0% | |
| GAAGAAAGAAGAGAAGAAAG+TGG | - | chr1_2:47146848-47146867 | Msa0073460:CDS | 35.0% | |
| AAAGAAGAGAAGAAAGTGGA+CGG | - | chr1_2:47146852-47146871 | Msa0073460:CDS | 35.0% | |
| GAAGGTGGAGGTTAATAAAA+TGG | - | chr1_2:47146887-47146906 | Msa0073460:CDS | 35.0% | |
| TAATACATCGGAGCTTGTAT+CGG | + | chr1_2:47146924-47146943 | None:intergenic | 35.0% | |
| GCTCCGATGTATTATTATGA+AGG | - | chr1_2:47146930-47146949 | Msa0073460:CDS | 35.0% | |
| AAGTAGTAACTATGCTGGTA+TGG | - | chr1_2:47146956-47146975 | Msa0073460:CDS | 35.0% | |
| GATCAATTTCATCATCAACC+TGG | - | chr1_2:47146978-47146997 | Msa0073460:CDS | 35.0% | |
| ATGAATATGAATCATGGTGG+TGG | - | chr1_2:47147053-47147072 | Msa0073460:intron | 35.0% | |
| CACATAAGAGAACAAGCATT+GGG | + | chr1_2:47147158-47147177 | None:intergenic | 35.0% | |
| TCACATAAGAGAACAAGCAT+TGG | + | chr1_2:47147159-47147178 | None:intergenic | 35.0% | |
| AGTGTGTATACACTTATGCA+CGG | - | chr1_2:47147194-47147213 | Msa0073460:CDS | 35.0% | |
| ! | CCATGTGTGTGATTGGTAAT+AGG | + | chr1_2:47145670-47145689 | None:intergenic | 40.0% |
| CCTATTACCAATCACACACA+TGG | - | chr1_2:47145667-47145686 | Msa0073460:three_prime_UTR | 40.0% | |
| TCCTTCATCAGCTTTCTTCT+CGG | + | chr1_2:47145856-47145875 | None:intergenic | 40.0% | |
| AGTTTGTAAACAACAGGAGC+AGG | + | chr1_2:47145915-47145934 | None:intergenic | 40.0% | |
| !! | TTCAGGTGTTGAAACCGTTA+AGG | - | chr1_2:47146078-47146097 | Msa0073460:CDS | 40.0% |
| TGAAGCTAGATCTGCCTTAA+CGG | + | chr1_2:47146095-47146114 | None:intergenic | 40.0% | |
| AAGATCAGATTGCACTGTGA+CGG | - | chr1_2:47146449-47146468 | Msa0073460:intron | 40.0% | |
| GGTAACAGTGAAAGGAACAA+TGG | - | chr1_2:47146695-47146714 | Msa0073460:intron | 40.0% | |
| GAAAGGAACAATGGAACCAA+AGG | - | chr1_2:47146704-47146723 | Msa0073460:intron | 40.0% | |
| GAGAAGAAAGAAAAAGAGGG+TGG | - | chr1_2:47146795-47146814 | Msa0073460:CDS | 40.0% | |
| AAGAAAGAAAAAGAGGGTGG+AGG | - | chr1_2:47146798-47146817 | Msa0073460:CDS | 40.0% | |
| GGTCAAAGTAGTAACTATGC+TGG | - | chr1_2:47146951-47146970 | Msa0073460:CDS | 40.0% | |
| TTTCATCATCAACCTGGGTA+TGG | - | chr1_2:47146984-47147003 | Msa0073460:CDS | 40.0% | |
| ATGTAATACGGTACTTGAGG+TGG | + | chr1_2:47147092-47147111 | None:intergenic | 40.0% | |
| TGCATGTAATACGGTACTTG+AGG | + | chr1_2:47147095-47147114 | None:intergenic | 40.0% | |
| !! | TCTGAGGAGGTGGATTATTA+GGG | + | chr1_2:47147118-47147137 | None:intergenic | 40.0% |
| !! | ATCTGAGGAGGTGGATTATT+AGG | + | chr1_2:47147119-47147138 | None:intergenic | 40.0% |
| TTCTCATCACTGAACATCTG+AGG | + | chr1_2:47147134-47147153 | None:intergenic | 40.0% | |
| ! | AAATATTAGACTGGCTCAGC+TGG | - | chr1_2:47147376-47147395 | Msa0073460:intron | 40.0% |
| TTTCTCTTCCAAATCTGGAC+AGG | + | chr1_2:47147411-47147430 | None:intergenic | 40.0% | |
| ! | CCATGTGTGTGATTGGTAAT+AGG | + | chr1_2:47145670-47145689 | None:intergenic | 40.0% |
| CCTATTACCAATCACACACA+TGG | - | chr1_2:47145667-47145686 | Msa0073460:three_prime_UTR | 40.0% | |
| TCCTTCATCAGCTTTCTTCT+CGG | + | chr1_2:47145856-47145875 | None:intergenic | 40.0% | |
| AGTTTGTAAACAACAGGAGC+AGG | + | chr1_2:47145915-47145934 | None:intergenic | 40.0% | |
| !! | TTCAGGTGTTGAAACCGTTA+AGG | - | chr1_2:47146078-47146097 | Msa0073460:CDS | 40.0% |
| TGAAGCTAGATCTGCCTTAA+CGG | + | chr1_2:47146095-47146114 | None:intergenic | 40.0% | |
| AAGATCAGATTGCACTGTGA+CGG | - | chr1_2:47146449-47146468 | Msa0073460:intron | 40.0% | |
| GGTAACAGTGAAAGGAACAA+TGG | - | chr1_2:47146695-47146714 | Msa0073460:intron | 40.0% | |
| GAAAGGAACAATGGAACCAA+AGG | - | chr1_2:47146704-47146723 | Msa0073460:intron | 40.0% | |
| GAGAAGAAAGAAAAAGAGGG+TGG | - | chr1_2:47146795-47146814 | Msa0073460:CDS | 40.0% | |
| AAGAAAGAAAAAGAGGGTGG+AGG | - | chr1_2:47146798-47146817 | Msa0073460:CDS | 40.0% | |
| GGTCAAAGTAGTAACTATGC+TGG | - | chr1_2:47146951-47146970 | Msa0073460:CDS | 40.0% | |
| TTTCATCATCAACCTGGGTA+TGG | - | chr1_2:47146984-47147003 | Msa0073460:CDS | 40.0% | |
| ATGTAATACGGTACTTGAGG+TGG | + | chr1_2:47147092-47147111 | None:intergenic | 40.0% | |
| TGCATGTAATACGGTACTTG+AGG | + | chr1_2:47147095-47147114 | None:intergenic | 40.0% | |
| !! | TCTGAGGAGGTGGATTATTA+GGG | + | chr1_2:47147118-47147137 | None:intergenic | 40.0% |
| !! | ATCTGAGGAGGTGGATTATT+AGG | + | chr1_2:47147119-47147138 | None:intergenic | 40.0% |
| TTCTCATCACTGAACATCTG+AGG | + | chr1_2:47147134-47147153 | None:intergenic | 40.0% | |
| ! | AAATATTAGACTGGCTCAGC+TGG | - | chr1_2:47147376-47147395 | Msa0073460:intron | 40.0% |
| TTTCTCTTCCAAATCTGGAC+AGG | + | chr1_2:47147411-47147430 | None:intergenic | 40.0% | |
| !! | GTGAGGTAATGGGATTGGTT+AGG | + | chr1_2:47145533-47145552 | None:intergenic | 45.0% |
| ! | GAGTGGGGAGAGAAGTATAA+GGG | + | chr1_2:47145587-47145606 | None:intergenic | 45.0% |
| ! | AGAGTGGGGAGAGAAGTATA+AGG | + | chr1_2:47145588-47145607 | None:intergenic | 45.0% |
| ACCGAGAAGAAAGCTGATGA+AGG | - | chr1_2:47145852-47145871 | Msa0073460:three_prime_UTR | 45.0% | |
| GGCTGAGAAAGCTAAGAAGA+AGG | - | chr1_2:47146168-47146187 | Msa0073460:CDS | 45.0% | |
| !!! | TTTTTTCTCCGCCGGTTTCT+CGG | + | chr1_2:47146233-47146252 | None:intergenic | 45.0% |
| CCAAATCCTTGTCTCCATCT+AGG | + | chr1_2:47146677-47146696 | None:intergenic | 45.0% | |
| CCTAGATGGAGACAAGGATT+TGG | - | chr1_2:47146674-47146693 | Msa0073460:intron | 45.0% | |
| TTATAACCACCACCATACCC+AGG | + | chr1_2:47146999-47147018 | None:intergenic | 45.0% | |
| TCATCACTGAACATCTGAGG+AGG | + | chr1_2:47147131-47147150 | None:intergenic | 45.0% | |
| TGGAGAATCCTGTCCAGATT+TGG | - | chr1_2:47147400-47147419 | Msa0073460:exon | 45.0% | |
| !! | GTGAGGTAATGGGATTGGTT+AGG | + | chr1_2:47145533-47145552 | None:intergenic | 45.0% |
| ! | GAGTGGGGAGAGAAGTATAA+GGG | + | chr1_2:47145587-47145606 | None:intergenic | 45.0% |
| ! | AGAGTGGGGAGAGAAGTATA+AGG | + | chr1_2:47145588-47145607 | None:intergenic | 45.0% |
| ACCGAGAAGAAAGCTGATGA+AGG | - | chr1_2:47145852-47145871 | Msa0073460:three_prime_UTR | 45.0% | |
| GGCTGAGAAAGCTAAGAAGA+AGG | - | chr1_2:47146168-47146187 | Msa0073460:CDS | 45.0% | |
| !!! | TTTTTTCTCCGCCGGTTTCT+CGG | + | chr1_2:47146233-47146252 | None:intergenic | 45.0% |
| CCAAATCCTTGTCTCCATCT+AGG | + | chr1_2:47146677-47146696 | None:intergenic | 45.0% | |
| CCTAGATGGAGACAAGGATT+TGG | - | chr1_2:47146674-47146693 | Msa0073460:intron | 45.0% | |
| TTATAACCACCACCATACCC+AGG | + | chr1_2:47146999-47147018 | None:intergenic | 45.0% | |
| TCATCACTGAACATCTGAGG+AGG | + | chr1_2:47147131-47147150 | None:intergenic | 45.0% | |
| TGGAGAATCCTGTCCAGATT+TGG | - | chr1_2:47147400-47147419 | Msa0073460:exon | 45.0% | |
| !!! | TTTTAAAATATTAATGAATT+AGG | + | chr1_2:47146548-47146567 | None:intergenic | 5.0% |
| !! | TAATTAATTAATTGTTAATT+TGG | - | chr1_2:47146603-47146622 | Msa0073460:CDS | 5.0% |
| !!! | TTTTAAAATATTAATGAATT+AGG | + | chr1_2:47146548-47146567 | None:intergenic | 5.0% |
| !! | TAATTAATTAATTGTTAATT+TGG | - | chr1_2:47146603-47146622 | Msa0073460:CDS | 5.0% |
| GAAACGGTGGGTGAGGTAAT+GGG | + | chr1_2:47145543-47145562 | None:intergenic | 50.0% | |
| TGAAACGGTGGGTGAGGTAA+TGG | + | chr1_2:47145544-47145563 | None:intergenic | 50.0% | |
| TACCTCACCCACCGTTTCAT+TGG | - | chr1_2:47145545-47145564 | Msa0073460:three_prime_UTR | 50.0% | |
| AACCAATGAAACGGTGGGTG+AGG | + | chr1_2:47145550-47145569 | None:intergenic | 50.0% | |
| ! | GGGAGAGAAGTATAAGGGAG+AGG | + | chr1_2:47145582-47145601 | None:intergenic | 50.0% |
| ACCAATCACACACATGGGAG+AGG | - | chr1_2:47145673-47145692 | Msa0073460:three_prime_UTR | 50.0% | |
| ACCTCTCCCATGTGTGTGAT+TGG | + | chr1_2:47145677-47145696 | None:intergenic | 50.0% | |
| TAAACAACAGGAGCAGGAGC+AGG | + | chr1_2:47145909-47145928 | None:intergenic | 50.0% | |
| !!! | TCGTCGGATTTTTTCTCCGC+CGG | + | chr1_2:47146241-47146260 | None:intergenic | 50.0% |
| ATCCGACGAGAAAAAACCGG+AGG | - | chr1_2:47146252-47146271 | Msa0073460:CDS | 50.0% | |
| !!! | CTCCTCCGGTTTTTTCTCGT+CGG | + | chr1_2:47146257-47146276 | None:intergenic | 50.0% |
| TCCTCAGCTTTCTTCTCCTC+CGG | + | chr1_2:47146271-47146290 | None:intergenic | 50.0% | |
| GTTGAAACGGCGAACCTAGA+TGG | - | chr1_2:47146660-47146679 | Msa0073460:intron | 50.0% | |
| GAAGAGAAGAAAGTGGACGG+TGG | - | chr1_2:47146855-47146874 | Msa0073460:CDS | 50.0% | |
| CATCATCAACCTGGGTATGG+TGG | - | chr1_2:47146987-47147006 | Msa0073460:CDS | 50.0% | |
| TCACTGAACATCTGAGGAGG+TGG | + | chr1_2:47147128-47147147 | None:intergenic | 50.0% | |
| GAAACGGTGGGTGAGGTAAT+GGG | + | chr1_2:47145543-47145562 | None:intergenic | 50.0% | |
| TGAAACGGTGGGTGAGGTAA+TGG | + | chr1_2:47145544-47145563 | None:intergenic | 50.0% | |
| TACCTCACCCACCGTTTCAT+TGG | - | chr1_2:47145545-47145564 | Msa0073460:three_prime_UTR | 50.0% | |
| AACCAATGAAACGGTGGGTG+AGG | + | chr1_2:47145550-47145569 | None:intergenic | 50.0% | |
| ! | GGGAGAGAAGTATAAGGGAG+AGG | + | chr1_2:47145582-47145601 | None:intergenic | 50.0% |
| ACCAATCACACACATGGGAG+AGG | - | chr1_2:47145673-47145692 | Msa0073460:three_prime_UTR | 50.0% | |
| ACCTCTCCCATGTGTGTGAT+TGG | + | chr1_2:47145677-47145696 | None:intergenic | 50.0% | |
| TAAACAACAGGAGCAGGAGC+AGG | + | chr1_2:47145909-47145928 | None:intergenic | 50.0% | |
| !!! | TCGTCGGATTTTTTCTCCGC+CGG | + | chr1_2:47146241-47146260 | None:intergenic | 50.0% |
| ATCCGACGAGAAAAAACCGG+AGG | - | chr1_2:47146252-47146271 | Msa0073460:CDS | 50.0% | |
| !!! | CTCCTCCGGTTTTTTCTCGT+CGG | + | chr1_2:47146257-47146276 | None:intergenic | 50.0% |
| TCCTCAGCTTTCTTCTCCTC+CGG | + | chr1_2:47146271-47146290 | None:intergenic | 50.0% | |
| GTTGAAACGGCGAACCTAGA+TGG | - | chr1_2:47146660-47146679 | Msa0073460:intron | 50.0% | |
| GAAGAGAAGAAAGTGGACGG+TGG | - | chr1_2:47146855-47146874 | Msa0073460:CDS | 50.0% | |
| CATCATCAACCTGGGTATGG+TGG | - | chr1_2:47146987-47147006 | Msa0073460:CDS | 50.0% | |
| TCACTGAACATCTGAGGAGG+TGG | + | chr1_2:47147128-47147147 | None:intergenic | 50.0% | |
| !! | GGTGGGTGAGGTAATGGGAT+TGG | + | chr1_2:47145538-47145557 | None:intergenic | 55.0% |
| ! | CGAAGTGCTCGTCATTTCGC+TGG | - | chr1_2:47145972-47145991 | Msa0073460:CDS | 55.0% |
| CCACCGCCAAAAAAAGACGC+CGG | - | chr1_2:47146205-47146224 | Msa0073460:CDS | 55.0% | |
| !!! | GCTCCGGCGTCTTTTTTTGG+CGG | + | chr1_2:47146211-47146230 | None:intergenic | 55.0% |
| !!! | TCGGCTCCGGCGTCTTTTTT+TGG | + | chr1_2:47146214-47146233 | None:intergenic | 55.0% |
| ACCGGAGGAGAAGAAAGCTG+AGG | - | chr1_2:47146267-47146286 | Msa0073460:CDS | 55.0% | |
| GGCGAACCTAGATGGAGACA+AGG | - | chr1_2:47146668-47146687 | Msa0073460:intron | 55.0% | |
| GAAAGTGGACGGTGGAGATG+CGG | - | chr1_2:47146863-47146882 | Msa0073460:CDS | 55.0% | |
| CATCAACCTGGGTATGGTGG+TGG | - | chr1_2:47146990-47147009 | Msa0073460:CDS | 55.0% | |
| GGTACTTGAGGTGGCTGCAT+AGG | + | chr1_2:47147083-47147102 | None:intergenic | 55.0% | |
| ! | ATTAGACTGGCTCAGCTGGC+TGG | - | chr1_2:47147380-47147399 | Msa0073460:intron | 55.0% |
| !! | GGTGGGTGAGGTAATGGGAT+TGG | + | chr1_2:47145538-47145557 | None:intergenic | 55.0% |
| ! | CGAAGTGCTCGTCATTTCGC+TGG | - | chr1_2:47145972-47145991 | Msa0073460:CDS | 55.0% |
| CCACCGCCAAAAAAAGACGC+CGG | - | chr1_2:47146205-47146224 | Msa0073460:CDS | 55.0% | |
| !!! | GCTCCGGCGTCTTTTTTTGG+CGG | + | chr1_2:47146211-47146230 | None:intergenic | 55.0% |
| !!! | TCGGCTCCGGCGTCTTTTTT+TGG | + | chr1_2:47146214-47146233 | None:intergenic | 55.0% |
| ACCGGAGGAGAAGAAAGCTG+AGG | - | chr1_2:47146267-47146286 | Msa0073460:CDS | 55.0% | |
| GGCGAACCTAGATGGAGACA+AGG | - | chr1_2:47146668-47146687 | Msa0073460:intron | 55.0% | |
| GAAAGTGGACGGTGGAGATG+CGG | - | chr1_2:47146863-47146882 | Msa0073460:CDS | 55.0% | |
| CATCAACCTGGGTATGGTGG+TGG | - | chr1_2:47146990-47147009 | Msa0073460:CDS | 55.0% | |
| GGTACTTGAGGTGGCTGCAT+AGG | + | chr1_2:47147083-47147102 | None:intergenic | 55.0% | |
| ! | ATTAGACTGGCTCAGCTGGC+TGG | - | chr1_2:47147380-47147399 | Msa0073460:intron | 55.0% |
| !!! | CCGGCGTCTTTTTTTGGCGG+TGG | + | chr1_2:47146208-47146227 | None:intergenic | 60.0% |
| !!! | CCGGCGTCTTTTTTTGGCGG+TGG | + | chr1_2:47146208-47146227 | None:intergenic | 60.0% |
| GCAGGAGCAGGAGCAGGAAC+AGG | + | chr1_2:47145897-47145916 | None:intergenic | 65.0% | |
| ACAGGAGCAGGAGCAGGAGC+AGG | + | chr1_2:47145903-47145922 | None:intergenic | 65.0% | |
| AGACGCCGGAGCCGAGAAAC+CGG | - | chr1_2:47146219-47146238 | Msa0073460:CDS | 65.0% | |
| TGGAGATGCGGCGAAGGTGG+AGG | - | chr1_2:47146875-47146894 | Msa0073460:CDS | 65.0% | |
| GCAGGAGCAGGAGCAGGAAC+AGG | + | chr1_2:47145897-47145916 | None:intergenic | 65.0% | |
| ACAGGAGCAGGAGCAGGAGC+AGG | + | chr1_2:47145903-47145922 | None:intergenic | 65.0% | |
| AGACGCCGGAGCCGAGAAAC+CGG | - | chr1_2:47146219-47146238 | Msa0073460:CDS | 65.0% | |
| TGGAGATGCGGCGAAGGTGG+AGG | - | chr1_2:47146875-47146894 | Msa0073460:CDS | 65.0% | |
| !! | CTCCGCCGGTTTCTCGGCTC+CGG | + | chr1_2:47146227-47146246 | None:intergenic | 70.0% |
| GGACGGTGGAGATGCGGCGA+AGG | - | chr1_2:47146869-47146888 | Msa0073460:CDS | 70.0% | |
| CGGTGGAGATGCGGCGAAGG+TGG | - | chr1_2:47146872-47146891 | Msa0073460:CDS | 70.0% | |
| !! | CTCCGCCGGTTTCTCGGCTC+CGG | + | chr1_2:47146227-47146246 | None:intergenic | 70.0% |
| GGACGGTGGAGATGCGGCGA+AGG | - | chr1_2:47146869-47146888 | Msa0073460:CDS | 70.0% | |
| CGGTGGAGATGCGGCGAAGG+TGG | - | chr1_2:47146872-47146891 | Msa0073460:CDS | 70.0% | |
| CGCCGGAGCCGAGAAACCGG+CGG | - | chr1_2:47146222-47146241 | Msa0073460:CDS | 75.0% | |
| CGCCGGAGCCGAGAAACCGG+CGG | - | chr1_2:47146222-47146241 | Msa0073460:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 47145530 | 47147564 | 47145530 | ID=Msa0073460;Name=Msa0073460 |
| chr1_2 | mRNA | 47145530 | 47147564 | 47145530 | ID=Msa0073460-mRNA-1;Parent=Msa0073460;Name=Msa0073460-mRNA-1;_AED=0.02;_eAED=0.02;_QI=156|1|1|1|1|1|5|386|338 |
| chr1_2 | exon | 47145530 | 47146436 | 47145530 | ID=Msa0073460-mRNA-1:exon:14313;Parent=Msa0073460-mRNA-1 |
| chr1_2 | exon | 47146582 | 47146660 | 47146582 | ID=Msa0073460-mRNA-1:exon:14312;Parent=Msa0073460-mRNA-1 |
| chr1_2 | exon | 47146758 | 47147011 | 47146758 | ID=Msa0073460-mRNA-1:exon:14311;Parent=Msa0073460-mRNA-1 |
| chr1_2 | exon | 47147101 | 47147254 | 47147101 | ID=Msa0073460-mRNA-1:exon:14310;Parent=Msa0073460-mRNA-1 |
| chr1_2 | exon | 47147400 | 47147564 | 47147400 | ID=Msa0073460-mRNA-1:exon:14309;Parent=Msa0073460-mRNA-1 |
| chr1_2 | five_prime_UTR | 47147409 | 47147564 | 47147409 | ID=Msa0073460-mRNA-1:five_prime_utr;Parent=Msa0073460-mRNA-1 |
| chr1_2 | CDS | 47147400 | 47147408 | 47147400 | ID=Msa0073460-mRNA-1:cds;Parent=Msa0073460-mRNA-1 |
| chr1_2 | CDS | 47147101 | 47147254 | 47147101 | ID=Msa0073460-mRNA-1:cds;Parent=Msa0073460-mRNA-1 |
| chr1_2 | CDS | 47146758 | 47147011 | 47146758 | ID=Msa0073460-mRNA-1:cds;Parent=Msa0073460-mRNA-1 |
| chr1_2 | CDS | 47146582 | 47146660 | 47146582 | ID=Msa0073460-mRNA-1:cds;Parent=Msa0073460-mRNA-1 |
| chr1_2 | CDS | 47145916 | 47146436 | 47145916 | ID=Msa0073460-mRNA-1:cds;Parent=Msa0073460-mRNA-1 |
| chr1_2 | three_prime_UTR | 47145530 | 47145915 | 47145530 | ID=Msa0073460-mRNA-1:three_prime_utr;Parent=Msa0073460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
