AlfalfaGEDB | Msa1165220

M. sativa cultivar zhongmu-4 / Msa1165220

KEGG: -
GO: GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006325 GO:0006338 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008623 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016043 GO:0016070 GO:0016071 GO:0016590 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019899 GO:0019904 GO:0031010 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070063 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1903506 GO:1904949 GO:2000112 GO:2001141
PFAM: PF00628.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1165220	XP_003626181.2	93.363	904	12	3	1	856	1	904	0.0	1686

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1165220	A0A396H911	93.363	904	12	3	1	856	1	904	0.0	1686

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TFs/TRs:

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Gene ID	Type	Classification
Msa1165220	TR	PHD

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002560	Msa1165220	0.805648	1.206021e-49	-8.615850e-47
Msa0010770	Msa1165220	0.812503	4.102296e-51	-8.615850e-47
Msa0026870	Msa1165220	0.804221	2.396893e-49	-8.615850e-47
Msa0032470	Msa1165220	0.838198	3.316759e-57	-8.615850e-47
Msa0038000	Msa1165220	0.840844	6.808257e-58	-8.615850e-47
Msa0038440	Msa1165220	0.825267	5.146013e-54	-8.615850e-47
Msa0042550	Msa1165220	0.813158	2.948370e-51	-8.615850e-47
Msa0045910	Msa1165220	0.801609	8.305490e-49	-8.615850e-47
Msa0055070	Msa1165220	0.834035	3.782297e-56	-8.615850e-47
Msa0055660	Msa1165220	0.800773	1.231567e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1165220	MtrunA17_Chr7g0271951	93.363	904	12	3	1	856	1	904	0.0	1686
Msa1165220	MtrunA17_Chr4g0061801	36.441	118	70	3	418	531	73	189	7.76e-17	85.1
Msa1165220	MtrunA17_Chr4g0061801	43.617	94	51	1	751	844	518	609	1.41e-14	77.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1165220	AT3G05670.3	37.146	918	472	25	5	856	4	882	1.49e-122	392
Msa1165220	AT3G05670.1	37.146	918	472	25	5	856	4	882	1.49e-122	392
Msa1165220	AT3G05670.2	37.146	918	472	25	5	856	4	882	1.49e-122	392

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Find 227 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGGTGTAAGGCGTCAG+CGG	0.637909	7_4:+57072889	Msa1165220:CDS
AAAGGAGCGATTGCAGTCAA+TGG	0.505261	7_4:+57075116	Msa1165220:CDS
AAATTCTTCGTCTTCATAAA+TGG	0.258327	7_4:-57073273	None:intergenic
AACACAATAAGTGTGTGCAG+GGG	0.725731	7_4:-57074329	None:intergenic
AACCCTCTGTCTCTTCCTCG+AGG	0.660516	7_4:-57072928	None:intergenic
AAGAGAAGACGAAAGAATGG+AGG	0.656131	7_4:+57073470	Msa1165220:CDS
AAGCCTCGAGGAAGAGACAG+AGG	0.635561	7_4:+57072925	Msa1165220:CDS
AAGGGGCAGAAAGAAGAAAA+AGG	0.360279	7_4:+57073244	Msa1165220:CDS
AATAGATCGAGGGCTAAAAC+TGG	0.465701	7_4:+57072873	Msa1165220:CDS
AATGGAAGAGGAAGAGGAAG+AGG	0.452919	7_4:+57073118	Msa1165220:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAAAACAATCATCCTC+TGG	-	chr7_4:57072765-57072784	None:intergenic	30.0%
GAAGAACAAGATGAAGAAAA+AGG	+	chr7_4:57072975-57072994	Msa1165220:CDS	30.0%
TGAAGACGAAGAATTTAAAC+CGG	+	chr7_4:57073280-57073299	Msa1165220:CDS	30.0%
AAAAATAATGGCACGAAGAT+GGG	+	chr7_4:57073356-57073375	Msa1165220:CDS	30.0%
AGTTGTGTGGAAATATAAGA+AGG	+	chr7_4:57073702-57073721	Msa1165220:CDS	30.0%
GAAATATAAGAAGGAACTTG+AGG	+	chr7_4:57073711-57073730	Msa1165220:CDS	30.0%
ATTGCAAAACCATAAGCAAA+TGG	-	chr7_4:57074144-57074163	None:intergenic	30.0%
TAAATCAGATTCTTGAGCTT+GGG	-	chr7_4:57074431-57074450	None:intergenic	30.0%
TTAAATCAGATTCTTGAGCT+TGG	-	chr7_4:57074432-57074451	None:intergenic	30.0%
TCAAGAATCTGATTTAAGAG+CGG	+	chr7_4:57074435-57074454	Msa1165220:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	57072633	57075650	57072633	ID=Msa1165220;Name=Msa1165220
chr7_4	mRNA	57072633	57075650	57072633	ID=Msa1165220-mRNA-1;Parent=Msa1165220;Name=Msa1165220-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0\|0\|0\|1\|1\|1\|4\|0\|856
chr7_4	exon	57072633	57073895	57072633	ID=Msa1165220-mRNA-1:exon:17120;Parent=Msa1165220-mRNA-1
chr7_4	exon	57074031	57074108	57074031	ID=Msa1165220-mRNA-1:exon:17121;Parent=Msa1165220-mRNA-1
chr7_4	exon	57074208	57075180	57074208	ID=Msa1165220-mRNA-1:exon:17122;Parent=Msa1165220-mRNA-1
chr7_4	exon	57075394	57075650	57075394	ID=Msa1165220-mRNA-1:exon:17123;Parent=Msa1165220-mRNA-1
chr7_4	CDS	57072633	57073895	57072633	ID=Msa1165220-mRNA-1:cds;Parent=Msa1165220-mRNA-1
chr7_4	CDS	57074031	57074108	57074031	ID=Msa1165220-mRNA-1:cds;Parent=Msa1165220-mRNA-1
chr7_4	CDS	57074208	57075180	57074208	ID=Msa1165220-mRNA-1:cds;Parent=Msa1165220-mRNA-1
chr7_4	CDS	57075394	57075650	57075394	ID=Msa1165220-mRNA-1:cds;Parent=Msa1165220-mRNA-1

Gene Sequence

>Msa1165220

ATGGTAAAGGGAAGAAAGGTTAGTAGCAAACGTGATTTGAGAAAGAGGGTTAGGTCAAAGGGCAGTGGTTCTGATGATTCCGATGAGGATTATGTGGTTTCGGATGATGCCGGGAATGTGTCTGATTGTCCAGAGGATGATTGTTTTTCTTTGGATGGATGTGCGGCTGAGGATAGTTTTGATGGGTTTATAGAAGACGAGGATTCGGAAAAGGAGGTGATTCAACGGGTGACTAAATTTAATAGATCGAGGGCTAAAACTGGTGTAAGGCGTCAGCGGACTAATGTAAGTAAAGCCTCGAGGAAGAGACAGAGGGTTACTTATGCAGAACAACCAGAAGAAGAAGAACAAGATGAAGAAAAAGGAGACGAAGAGGAAGAAGTAGAAGAAGAGGAGGAGGAAGAAGAAGATGATGATGATTACAATGATGTTGATGAAGAGGAGGATGAGGAGGAAGAGGAAGAGGAAGAAGAAGTGGAAGTGGAAATGGAAGAGGAAGAGGAAGAGGAAGAAAAAGAAGAAGTGGAAGTGGAAGAGGTAGGTGAAAATGATGAGGATGATGAATTTAAACCAGAGGAAGAAGATTTCACAGATGAGGAGGAAGAAGAAACAAGGGGCAGAAAGAAGAAAAAGGATAATTCCATTTATGAAGACGAAGAATTTAAACCGGAGGACGAAGATTACACAGATGAGGAGGAAGAAGAAACAAGGCGCATTAAGAAGAAAAATAATGGCACGAAGATGGGCAAGAAGAAGGCTTTGAAGAAAAGGGTTTCTGCAACTTCTAGCAGAGGTCGAAAAAGGAGTGGTTCTAGAGTTTCAAAGAAGCCCAAGAGAAAGAGAAGACGAAAGAATGGAGGATCAACGAGGAAAGTACAGTGTGATGATGCAGATGATTTTTTGGATAATGTCCCAGCCATCAGAACAAATAGCAGAAAGAGATCAGTCCTGAAAAGGAGAAGGGTTATCCTTGAAGATGCCAATTCCGGCTCAGATTGCGAGTCTAGACCATCTGATTATGAGTTTACTATCTCTGAAGAAGAAAAAGAACAGGTGAGAGAAGCCGTGGAGTTGTGTGGAAATATAAGAAGGAACTTGAGGAGAGCTTCTCTTCGAATGGAAAATGAAGTGGTTGGACTATATGAAGATCTACATCAGCAATGGAAGCCTCCAGCACGGAAGGGTAAGGAAAAGATAGAGGAATCTCAAGGAAGAAAGGGTAAGGAAAAAGTAGAGGACTTGAAGAGTGAGGTGGGAAAACAGAGATTCCAAACAATCAGTAAGCCTGCACGATCAACAACAGCAGAAGAGGCGGTGATACAAGTGCCCGAACGTGATCAGGTTTATCAGCCAACTGAAGAAGAACTCAGGAGCTACATTGATCCATATGAGTCCGTTATGTGTTCAGAGTGTCATCTAGGTGGAGACGATGGCCTCATGCTACTCTGTGATATATGTGATTCCCCTGCACACACTTATTGTGTTGGTTTGGGGAGAGAAGTACCTGAAGGTAATTGGTACTGTGATGGTTGTAGACCAGTTGCTTTGGCATCTTTAAACTCCCAAGCTCAAGAATCTGATTTAAGAGCGGCAACTCAAAGCCTGCCTTCCCGGCCATCACCTGTTCATATACGAGAAAGTATAGACCTGAACCTGATGTCTTCACCTCATACATCTTTTAGTCAAGGGTTCGGGCATCTTTCATCTTCTAGATTTTCTGGCAGAAGTACCGAAGGAGCTTCTCCGATGTCTGGAGGTGGGGCACCAACTTTATCAGAGAGACGGTGGATACACCGTCAAGTTCAGCAGCTACAAATTCAGCAGCTACGTTCAATTGATAGAATGGCTTCTACAACTGGCAGAACTATCGGTGTTTCAGCTACCGGTACAGTAAGTAACTTGAATAGCCCTGAAATTAATAGGGAACCAAGTTCTCAACATATAAGAACACAGGACGTAGGAACATCCTATCACACATTTTTTGAGGAGAGATTAGGCAACAACATCTCTCCATTTATGCAGAATGGAGACCCCTTCTCCATAAGAATGAGCAATTCAAGGGGCCCAGTGGTTCAGGATTCAACCATGTTTTCGAACGGGCCTGTGAATGCAGCTATATGGCCTGGAATTTTGGGGACATCAACCTTATCAGATTATGGACCAATCCACCCATGCAGCAGCAGATCAAACATTGTCACTGAGGTTGGTATGCCCGCTACTGTCAAAGAAGAAGATAACTTGCACATTGTAAAGGAGCGATTGCAGTCAATGGTTAAAAGTCATCTGAAGAGATTGTCTCAAGATGCTGATTTGGGTTATAGTACTTTCAAGGACATTGCAAGGAGTTCTACGCATACCATACTCGCTGCTTGTGGACTCGAGCACAATACGAGTGAGGTTTGTACTGTGCCTCCACCATCCGTCTGTCCCCACATTGAATTAATTGCTGGTGGACAAATGAGTATGATTAAAGGTTGCTGCTCCTCTTGTTTTGATTCTTTTGTAGGAGATGTGGTTAAAAGTATTTTGGACACAAGAATGTCTTCACAGTGGTTACGATTAGGACTTTAG

Protein sequence

>Msa1165220

MVKGRKVSSKRDLRKRVRSKGSGSDDSDEDYVVSDDAGNVSDCPEDDCFSLDGCAAEDSFDGFIEDEDSEKEVIQRVTKFNRSRAKTGVRRQRTNVSKASRKRQRVTYAEQPEEEEQDEEKGDEEEEVEEEEEEEEDDDDYNDVDEEEDEEEEEEEEEVEVEMEEEEEEEEKEEVEVEEVGENDEDDEFKPEEEDFTDEEEEETRGRKKKKDNSIYEDEEFKPEDEDYTDEEEEETRRIKKKNNGTKMGKKKALKKRVSATSSRGRKRSGSRVSKKPKRKRRRKNGGSTRKVQCDDADDFLDNVPAIRTNSRKRSVLKRRRVILEDANSGSDCESRPSDYEFTISEEEKEQVREAVELCGNIRRNLRRASLRMENEVVGLYEDLHQQWKPPARKGKEKIEESQGRKGKEKVEDLKSEVGKQRFQTISKPARSTTAEEAVIQVPERDQVYQPTEEELRSYIDPYESVMCSECHLGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALASLNSQAQESDLRAATQSLPSRPSPVHIRESIDLNLMSSPHTSFSQGFGHLSSSRFSGRSTEGASPMSGGGAPTLSERRWIHRQVQQLQIQQLRSIDRMASTTGRTIGVSATGTVSNLNSPEINREPSSQHIRTQDVGTSYHTFFEERLGNNISPFMQNGDPFSIRMSNSRGPVVQDSTMFSNGPVNAAIWPGILGTSTLSDYGPIHPCSSRSNIVTEVGMPATVKEEDNLHIVKERLQSMVKSHLKRLSQDADLGYSTFKDIARSSTHTILAACGLEHNTSEVCTVPPPSVCPHIELIAGGQMSMIKGCCSSCFDSFVGDVVKSILDTRMSSQWLRLGL*