Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0792780 | XP_013448774.1 | 91.753 | 97 | 8 | 0 | 1 | 97 | 1 | 97 | 1.42e-59 | 187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0792780 | A0A072U035 | 91.753 | 97 | 8 | 0 | 1 | 97 | 1 | 97 | 6.80e-60 | 187 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006880 | Msa0792780 | 0.815925 | 7.201106e-52 | -8.615850e-47 |
| Msa0008090 | Msa0792780 | 0.811266 | 7.629281e-51 | -8.615850e-47 |
| Msa0008840 | Msa0792780 | 0.803300 | 3.722549e-49 | -8.615850e-47 |
| Msa0020390 | Msa0792780 | 0.817606 | 3.022222e-52 | -8.615850e-47 |
| Msa0029260 | Msa0792780 | 0.817599 | 3.033554e-52 | -8.615850e-47 |
| Msa0033880 | Msa0792780 | 0.809432 | 1.897854e-50 | -8.615850e-47 |
| Msa0038870 | Msa0792780 | 0.825610 | 4.266992e-54 | -8.615850e-47 |
| Msa0049390 | Msa0792780 | 0.989040 | 1.925568e-176 | -8.615850e-47 |
| Msa0057140 | Msa0792780 | 0.803648 | 3.153838e-49 | -8.615850e-47 |
| Msa0057750 | Msa0792780 | 0.800267 | 1.561752e-48 | -8.615850e-47 |
| Msa0065010 | Msa0792780 | 0.832084 | 1.156604e-55 | -8.615850e-47 |
| Msa0068020 | Msa0792780 | 0.835386 | 1.729205e-56 | -8.615850e-47 |
| Msa0090550 | Msa0792780 | 0.805266 | 1.450619e-49 | -8.615850e-47 |
| Msa0103790 | Msa0792780 | 0.821730 | 3.457077e-53 | -8.615850e-47 |
| Msa0115370 | Msa0792780 | 0.819769 | 9.758581e-53 | -8.615850e-47 |
| Msa0118540 | Msa0792780 | 0.809371 | 1.955609e-50 | -8.615850e-47 |
| Msa0603570 | Msa0792780 | 0.815863 | 7.432482e-52 | -8.615850e-47 |
| Msa0610130 | Msa0792780 | 0.806541 | 7.825552e-50 | -8.615850e-47 |
| Msa0610390 | Msa0792780 | 0.808450 | 3.078228e-50 | -8.615850e-47 |
| Msa0615490 | Msa0792780 | 0.802463 | 5.543133e-49 | -8.615850e-47 |
| Msa0618930 | Msa0792780 | 0.804286 | 2.323237e-49 | -8.615850e-47 |
| Msa0619920 | Msa0792780 | 0.811040 | 8.541650e-51 | -8.615850e-47 |
| Msa0626940 | Msa0792780 | 0.821520 | 3.865520e-53 | -8.615850e-47 |
| Msa0630950 | Msa0792780 | 0.804586 | 2.012052e-49 | -8.615850e-47 |
| Msa0631350 | Msa0792780 | 0.808805 | 2.585964e-50 | -8.615850e-47 |
| Msa0663900 | Msa0792780 | 0.800529 | 1.381121e-48 | -8.615850e-47 |
| Msa0665080 | Msa0792780 | 0.803366 | 3.608105e-49 | -8.615850e-47 |
| Msa0669720 | Msa0792780 | 0.830449 | 2.918425e-55 | -8.615850e-47 |
| Msa0669760 | Msa0792780 | 0.825391 | 4.808481e-54 | -8.615850e-47 |
| Msa0673470 | Msa0792780 | 0.800521 | 1.385949e-48 | -8.615850e-47 |
| Msa0679360 | Msa0792780 | 0.801963 | 7.026893e-49 | -8.615850e-47 |
| Msa0689500 | Msa0792780 | 0.811764 | 5.946581e-51 | -8.615850e-47 |
| Msa0692940 | Msa0792780 | 0.806278 | 8.889355e-50 | -8.615850e-47 |
| Msa0693790 | Msa0792780 | 0.810674 | 1.024727e-50 | -8.615850e-47 |
| Msa0702150 | Msa0792780 | 0.822922 | 1.827541e-53 | -8.615850e-47 |
| Msa0702270 | Msa0792780 | 0.828680 | 7.857603e-55 | -8.615850e-47 |
| Msa0703910 | Msa0792780 | 0.831162 | 1.951812e-55 | -8.615850e-47 |
| Msa0735310 | Msa0792780 | 0.809941 | 1.475232e-50 | -8.615850e-47 |
| Msa0758130 | Msa0792780 | 0.801266 | 9.763621e-49 | -8.615850e-47 |
| Msa0792780 | Msa0793390 | 0.804744 | 1.865185e-49 | -8.615850e-47 |
| Msa0792780 | Msa0805500 | 0.807273 | 5.478026e-50 | -8.615850e-47 |
| Msa0792780 | Msa0818170 | 0.806413 | 8.324998e-50 | -8.615850e-47 |
| Msa0792780 | Msa0833190 | -0.815461 | 9.134525e-52 | -8.615850e-47 |
| Msa0792780 | Msa0861470 | 0.812284 | 4.581821e-51 | -8.615850e-47 |
| Msa0792780 | Msa0861570 | 0.817510 | 3.176097e-52 | -8.615850e-47 |
| Msa0792780 | Msa0879860 | 0.800519 | 1.387320e-48 | -8.615850e-47 |
| Msa0792780 | Msa0887250 | 0.814440 | 1.539121e-51 | -8.615850e-47 |
| Msa0792780 | Msa0890550 | 0.802220 | 6.220449e-49 | -8.615850e-47 |
| Msa0792780 | Msa0918390 | 0.800216 | 1.599317e-48 | -8.615850e-47 |
| Msa0792780 | Msa0921870 | 0.802604 | 5.184750e-49 | -8.615850e-47 |
| Msa0792780 | Msa0928120 | 0.802760 | 4.813786e-49 | -8.615850e-47 |
| Msa0792780 | Msa0932570 | 0.805146 | 1.537075e-49 | -8.615850e-47 |
| Msa0792780 | Msa0937330 | 0.817744 | 2.812603e-52 | -8.615850e-47 |
| Msa0792780 | Msa0943170 | 0.810985 | 8.776409e-51 | -8.615850e-47 |
| Msa0792780 | Msa0943270 | 0.821694 | 3.523938e-53 | -8.615850e-47 |
| Msa0792780 | Msa0944610 | 0.808944 | 2.414751e-50 | -8.615850e-47 |
| Msa0792780 | Msa0974810 | 0.815313 | 9.854900e-52 | -8.615850e-47 |
| Msa0792780 | Msa0974950 | 0.800169 | 1.634805e-48 | -8.615850e-47 |
| Msa0792780 | Msa0993240 | 0.840088 | 1.073127e-57 | -8.615850e-47 |
| Msa0792780 | Msa1002600 | -0.809914 | 1.495397e-50 | -8.615850e-47 |
| Msa0792780 | Msa1025940 | 0.824715 | 6.947206e-54 | -8.615850e-47 |
| Msa0792780 | Msa1071320 | 0.815246 | 1.019694e-51 | -8.615850e-47 |
| Msa0792780 | Msa1073400 | 0.809150 | 2.181265e-50 | -8.615850e-47 |
| Msa0792780 | Msa1093330 | 0.804106 | 2.532969e-49 | -8.615850e-47 |
| Msa0792780 | Msa1094430 | 0.850837 | 1.311571e-60 | -8.615850e-47 |
| Msa0792780 | Msa1113880 | 0.804692 | 1.912256e-49 | -8.615850e-47 |
| Msa0792780 | Msa1126850 | 0.829054 | 6.378014e-55 | -8.615850e-47 |
| Msa0792780 | Msa1131560 | 0.800320 | 1.523552e-48 | -8.615850e-47 |
| Msa0792780 | Msa1144970 | 0.811873 | 5.631235e-51 | -8.615850e-47 |
| Msa0792780 | Msa1152520 | 0.813903 | 2.021901e-51 | -8.615850e-47 |
| Msa0792780 | Msa1165780 | 0.806386 | 8.437760e-50 | -8.615850e-47 |
| Msa0792780 | Msa1165960 | 0.818038 | 2.414916e-52 | -8.615850e-47 |
| Msa0792780 | Msa1176360 | 0.843333 | 1.494640e-58 | -8.615850e-47 |
| Msa0792780 | Msa1179980 | 0.800403 | 1.464935e-48 | -8.615850e-47 |
| Msa0792780 | Msa1202580 | 0.820357 | 7.157880e-53 | -8.615850e-47 |
| Msa0792780 | Msa1206650 | 0.815633 | 8.363995e-52 | -8.615850e-47 |
| Msa0792780 | Msa1211830 | 0.833347 | 5.617556e-56 | -8.615850e-47 |
| Msa0792780 | Msa1226610 | 0.801530 | 8.620548e-49 | -8.615850e-47 |
| Msa0792780 | Msa1227690 | 0.811296 | 7.514515e-51 | -8.615850e-47 |
| Msa0792780 | Msa1253400 | 0.805726 | 1.161611e-49 | -8.615850e-47 |
| Msa0792780 | Msa1253810 | 0.833047 | 6.675050e-56 | -8.615850e-47 |
| Msa0792780 | Msa1270620 | 0.802764 | 4.805117e-49 | -8.615850e-47 |
| Msa0792780 | Msa1270690 | 0.800855 | 1.184636e-48 | -8.615850e-47 |
| Msa0792780 | Msa1278900 | 0.819090 | 1.393634e-52 | -8.615850e-47 |
| Msa0792780 | Msa1279590 | 0.816109 | 6.550238e-52 | -8.615850e-47 |
| Msa0792780 | Msa1289300 | 0.825677 | 4.113726e-54 | -8.615850e-47 |
| Msa0792780 | Msa1296830 | 0.842234 | 2.929267e-58 | -8.615850e-47 |
| Msa0792780 | Msa1297600 | 0.827400 | 1.598039e-54 | -8.615850e-47 |
| Msa0792780 | Msa1299700 | 0.836394 | 9.603253e-57 | -8.615850e-47 |
| Msa0792780 | Msa1303580 | 0.825857 | 3.729506e-54 | -8.615850e-47 |
| Msa0792780 | Msa1307180 | 0.821991 | 3.007061e-53 | -8.615850e-47 |
| Msa0792780 | Msa1316360 | 0.814774 | 1.298302e-51 | -8.615850e-47 |
| Msa0792780 | Msa1317270 | 0.825519 | 4.484443e-54 | -8.615850e-47 |
| Msa0792780 | Msa1323800 | 0.804609 | 1.989760e-49 | -8.615850e-47 |
| Msa0792780 | Msa1332220 | 0.813594 | 2.365145e-51 | -8.615850e-47 |
| Msa0792780 | Msa1336560 | 0.800239 | 1.582422e-48 | -8.615850e-47 |
| Msa0792780 | Msa1351540 | 0.825752 | 3.949011e-54 | -8.615850e-47 |
| Msa0792780 | Msa1362420 | 0.802236 | 6.174670e-49 | -8.615850e-47 |
| Msa0792780 | Msa1371240 | 0.804691 | 1.913418e-49 | -8.615850e-47 |
| Msa0792780 | Msa1376650 | 0.815312 | 9.859624e-52 | -8.615850e-47 |
| Msa0792780 | Msa1397940 | 0.805206 | 1.492831e-49 | -8.615850e-47 |
| Msa0792780 | Msa1433600 | 0.822531 | 2.253671e-53 | -8.615850e-47 |
| Msa0792780 | Msa1436520 | 0.818338 | 2.064760e-52 | -8.615850e-47 |
| Msa0792780 | Msa1437270 | 0.800545 | 1.370958e-48 | -8.615850e-47 |
| Msa0792780 | Msa1445940 | 0.801437 | 9.007510e-49 | -8.615850e-47 |
| Msa0792780 | Msa1447890 | 0.806772 | 6.991889e-50 | -8.615850e-47 |
| Msa0792780 | Msa1452570 | 0.834411 | 3.045239e-56 | -8.615850e-47 |
| Msa0792780 | Msa1454450 | 0.804348 | 2.255450e-49 | -8.615850e-47 |
| Msa0792780 | Msa1457220 | 0.802390 | 5.739333e-49 | -8.615850e-47 |
| Msa0121820 | Msa0792780 | 0.820351 | 7.182851e-53 | -8.615850e-47 |
| Msa0126880 | Msa0792780 | 0.802142 | 6.454462e-49 | -8.615850e-47 |
| Msa0127850 | Msa0792780 | 0.806585 | 7.657729e-50 | -8.615850e-47 |
| Msa0150260 | Msa0792780 | 0.814108 | 1.822590e-51 | -8.615850e-47 |
| Msa0154920 | Msa0792780 | 0.803545 | 3.311901e-49 | -8.615850e-47 |
| Msa0164370 | Msa0792780 | 0.826631 | 2.439622e-54 | -8.615850e-47 |
| Msa0166750 | Msa0792780 | 0.826060 | 3.336616e-54 | -8.615850e-47 |
| Msa0167980 | Msa0792780 | 0.811496 | 6.800414e-51 | -8.615850e-47 |
| Msa0169300 | Msa0792780 | 0.812595 | 3.918295e-51 | -8.615850e-47 |
| Msa0174000 | Msa0792780 | 0.808930 | 2.431098e-50 | -8.615850e-47 |
| Msa0175200 | Msa0792780 | 0.846166 | 2.576116e-59 | -8.615850e-47 |
| Msa0183460 | Msa0792780 | 0.814890 | 1.223483e-51 | -8.615850e-47 |
| Msa0183870 | Msa0792780 | 0.830741 | 2.475655e-55 | -8.615850e-47 |
| Msa0191080 | Msa0792780 | 0.806478 | 8.067535e-50 | -8.615850e-47 |
| Msa0193600 | Msa0792780 | 0.801964 | 7.022692e-49 | -8.615850e-47 |
| Msa0199690 | Msa0792780 | 0.804532 | 2.065324e-49 | -8.615850e-47 |
| Msa0209080 | Msa0792780 | 0.813299 | 2.746592e-51 | -8.615850e-47 |
| Msa0209500 | Msa0792780 | 0.820596 | 6.309912e-53 | -8.615850e-47 |
| Msa0221600 | Msa0792780 | 0.800031 | 1.743626e-48 | -8.615850e-47 |
| Msa0226330 | Msa0792780 | 0.801576 | 8.437973e-49 | -8.615850e-47 |
| Msa0233370 | Msa0792780 | 0.803528 | 3.340003e-49 | -8.615850e-47 |
| Msa0236270 | Msa0792780 | 0.814305 | 1.648708e-51 | -8.615850e-47 |
| Msa0364990 | Msa0792780 | 0.804792 | 1.822064e-49 | -8.615850e-47 |
| Msa0365860 | Msa0792780 | 0.801532 | 8.614212e-49 | -8.615850e-47 |
| Msa0376690 | Msa0792780 | 0.801840 | 7.446465e-49 | -8.615850e-47 |
| Msa0385490 | Msa0792780 | 0.805692 | 1.180932e-49 | -8.615850e-47 |
| Msa0389510 | Msa0792780 | 0.800584 | 1.345972e-48 | -8.615850e-47 |
| Msa0419520 | Msa0792780 | 0.803918 | 2.771206e-49 | -8.615850e-47 |
| Msa0419720 | Msa0792780 | 0.800122 | 1.671523e-48 | -8.615850e-47 |
| Msa0427860 | Msa0792780 | -0.807277 | 5.468578e-50 | -8.615850e-47 |
| Msa0450930 | Msa0792780 | 0.805991 | 1.021577e-49 | -8.615850e-47 |
| Msa0458640 | Msa0792780 | 0.828092 | 1.089636e-54 | -8.615850e-47 |
| Msa0481810 | Msa0792780 | 0.807794 | 4.247681e-50 | -8.615850e-47 |
| Msa0257490 | Msa0792780 | 0.802720 | 4.907224e-49 | -8.615850e-47 |
| Msa0273650 | Msa0792780 | 0.802175 | 6.354758e-49 | -8.615850e-47 |
| Msa0280430 | Msa0792780 | 0.815049 | 1.127883e-51 | -8.615850e-47 |
| Msa0296790 | Msa0792780 | 0.824643 | 7.221393e-54 | -8.615850e-47 |
| Msa0296920 | Msa0792780 | 0.820873 | 5.449977e-53 | -8.615850e-47 |
| Msa0304590 | Msa0792780 | 0.802075 | 6.662516e-49 | -8.615850e-47 |
| Msa0304660 | Msa0792780 | 0.819104 | 1.383519e-52 | -8.615850e-47 |
| Msa0331700 | Msa0792780 | 0.817801 | 2.731049e-52 | -8.615850e-47 |
| Msa0337510 | Msa0792780 | 0.814015 | 1.910739e-51 | -8.615850e-47 |
| Msa0347680 | Msa0792780 | 0.815160 | 1.065730e-51 | -8.615850e-47 |
| Msa0506400 | Msa0792780 | 0.818563 | 1.836674e-52 | -8.615850e-47 |
| Msa0511770 | Msa0792780 | 0.812018 | 5.235872e-51 | -8.615850e-47 |
| Msa0527910 | Msa0792780 | 0.800781 | 1.226903e-48 | -8.615850e-47 |
| Msa0534410 | Msa0792780 | 0.812798 | 3.536475e-51 | -8.615850e-47 |
| Msa0539050 | Msa0792780 | 0.803373 | 3.595850e-49 | -8.615850e-47 |
| Msa0539060 | Msa0792780 | 0.809766 | 1.608894e-50 | -8.615850e-47 |
| Msa0542290 | Msa0792780 | 0.805036 | 1.620502e-49 | -8.615850e-47 |
| Msa0547160 | Msa0792780 | 0.818637 | 1.767054e-52 | -8.615850e-47 |
| Msa0576730 | Msa0792780 | 0.828228 | 1.010483e-54 | -8.615850e-47 |
| Msa0580230 | Msa0792780 | 0.806244 | 9.037738e-50 | -8.615850e-47 |
| Msa0581130 | Msa0792780 | 0.818971 | 1.483842e-52 | -8.615850e-47 |
| Msa0590650 | Msa0792780 | 0.814293 | 1.658359e-51 | -8.615850e-47 |
| Msa0594710 | Msa0792780 | 0.810512 | 1.111187e-50 | -8.615850e-47 |
| Msa0594910 | Msa0792780 | 0.804617 | 1.982486e-49 | -8.615850e-47 |
| Msa0600450 | Msa0792780 | 0.803199 | 3.906850e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0792780 | MtrunA17_Chr7g0237101 | 87.952 | 83 | 10 | 0 | 1 | 83 | 1 | 83 | 6.19e-51 | 157 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0792780 | AT3G13677.2 | 63.333 | 60 | 22 | 0 | 38 | 97 | 17 | 76 | 3.27e-21 | 80.1 |
| Msa0792780 | AT3G13677.3 | 63.333 | 60 | 22 | 0 | 38 | 97 | 17 | 76 | 3.27e-21 | 80.1 |
| Msa0792780 | AT3G13677.1 | 54.167 | 48 | 22 | 0 | 38 | 85 | 17 | 64 | 4.24e-12 | 59.3 |
Find 35 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCTTGGTTGGAACAATTT+TGG | 0.158239 | 5_3:+4521257 | Msa0792780:five_prime_UTR |
| TTTAAAGTCATGCCCATATT+TGG | 0.207257 | 5_3:-4524432 | None:intergenic |
| ATGACACAGCGTAATGATTT+TGG | 0.209604 | 5_3:-4521336 | None:intergenic |
| CGGCACATCAAAGCCAAATA+TGG | 0.223112 | 5_3:+4524419 | Msa0792780:three_prime_UTR |
| TGAAAATGCTAATAAGTTAT+AGG | 0.225964 | 5_3:-4524550 | None:intergenic |
| CAGTAGTACAAGAAGAAATA+AGG | 0.333259 | 5_3:+4523889 | Msa0792780:CDS |
| TACTACTGTTTAAATTATCA+AGG | 0.382671 | 5_3:-4523785 | None:intergenic |
| TCTGCAACTTATGTCAGTTC+AGG | 0.388016 | 5_3:+4523977 | Msa0792780:CDS |
| GGCTATCTATGATGTATATT+AGG | 0.389925 | 5_3:+4524315 | Msa0792780:three_prime_UTR |
| TGATTGATTATAACTTATAT+AGG | 0.409831 | 5_3:+4524294 | Msa0792780:three_prime_UTR |
| ATCATAAATATCATATCATT+AGG | 0.420417 | 5_3:-4524481 | None:intergenic |
| AGAATTATCAACAAGCATGC+TGG | 0.441552 | 5_3:+4524252 | Msa0792780:three_prime_UTR |
| CATCATCCATCATTTGATCA+AGG | 0.473735 | 5_3:-4523812 | None:intergenic |
| AGCCGCGCAGGCATGCTTGA+AGG | 0.475080 | 5_3:+4524341 | Msa0792780:three_prime_UTR |
| ATCAATTGCTCGAGCAGGAA+TGG | 0.481401 | 5_3:-4521282 | None:intergenic |
| ATTTCAGAGAACTATATCTC+AGG | 0.485584 | 5_3:+4524187 | Msa0792780:intron |
| TCCTGATCAATTGCTCGAGC+AGG | 0.499019 | 5_3:-4521287 | None:intergenic |
| TCCTGCTCGAGCAATTGATC+AGG | 0.499795 | 5_3:+4521286 | Msa0792780:five_prime_UTR |
| GAGAACTATATCTCAGGAGC+AGG | 0.501811 | 5_3:+4524193 | Msa0792780:intron |
| TATATTAGGCGCAGCCGCGC+AGG | 0.507348 | 5_3:+4524329 | Msa0792780:three_prime_UTR |
| GGCACATCAAAGCCAAATAT+GGG | 0.507858 | 5_3:+4524420 | Msa0792780:three_prime_UTR |
| TATGGGCATGACTTTAAAAG+TGG | 0.508332 | 5_3:+4524437 | Msa0792780:three_prime_UTR |
| TTGATAGTGCAGTGCAAAAG+TGG | 0.518366 | 5_3:+4523758 | Msa0792780:intron |
| GAATTATCAACAAGCATGCT+GGG | 0.518576 | 5_3:+4524253 | Msa0792780:three_prime_UTR |
| ACTACTGTTTAAATTATCAA+GGG | 0.518963 | 5_3:-4523784 | None:intergenic |
| CTTGAGACGATGTGCGACAT+AGG | 0.522340 | 5_3:-4523940 | None:intergenic |
| TATATCTCAGGAGCAGGAGT+TGG | 0.527070 | 5_3:+4524199 | Msa0792780:CDS |
| TAATACCCTTGATCAAATGA+TGG | 0.534465 | 5_3:+4523806 | Msa0792780:CDS |
| AGTATGGTGTGAGAGAAAAC+AGG | 0.549837 | 5_3:+4523866 | Msa0792780:CDS |
| AAAATCATTACGCTGTGTCA+TGG | 0.581847 | 5_3:+4521338 | Msa0792780:exon |
| ATCATCCATCATTTGATCAA+GGG | 0.590538 | 5_3:-4523811 | None:intergenic |
| CTATGTCGCACATCGTCTCA+AGG | 0.593279 | 5_3:+4523941 | Msa0792780:CDS |
| TTGGTGAGTTGTGGAAAACA+CGG | 0.618922 | 5_3:-4521317 | None:intergenic |
| AACCTTCAAGCATGCCTGCG+CGG | 0.670325 | 5_3:-4524343 | None:intergenic |
| GAGTTGTGGAAAACACGGCG+AGG | 0.735021 | 5_3:-4521312 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAACTATAATAATTGTT+TGG | + | chr5_3:4523568-4523587 | Msa0792780:intron | 10.0% |
| !!! | ATTTTTGAACTTAAACAAAA+CGG | - | chr5_3:4521738-4521757 | None:intergenic | 15.0% |
| !!! | CTCTTTTCATTAATAATATA+CGG | + | chr5_3:4522870-4522889 | Msa0792780:intron | 15.0% |
| !! | AGAAGATAAATAAATTGTTT+AGG | - | chr5_3:4523412-4523431 | None:intergenic | 15.0% |
| !!! | TATGAAACATAACAAAATTT+TGG | + | chr5_3:4523539-4523558 | Msa0792780:intron | 15.0% |
| !!! | ACATTATCTTTTTTTTTTTG+AGG | - | chr5_3:4524098-4524117 | None:intergenic | 15.0% |
| !! | TGATTGATTATAACTTATAT+AGG | + | chr5_3:4524294-4524313 | Msa0792780:three_prime_UTR | 15.0% |
| !!! | TATAAAATGTTTTACACTAT+CGG | + | chr5_3:4524399-4524418 | Msa0792780:three_prime_UTR | 15.0% |
| !! | ATCATAAATATCATATCATT+AGG | - | chr5_3:4524484-4524503 | None:intergenic | 15.0% |
| !! | CTATTATTATAAACATGTTG+AGG | - | chr5_3:4521434-4521453 | None:intergenic | 20.0% |
| !!! | GCAAATAAATAAGCTTTTTA+TGG | - | chr5_3:4521710-4521729 | None:intergenic | 20.0% |
| !!! | TTTAGATTTAGCTTTAATAG+AGG | + | chr5_3:4521997-4522016 | Msa0792780:intron | 20.0% |
| !!! | TATTTTGTCTTTTGATAAGT+TGG | + | chr5_3:4522034-4522053 | Msa0792780:intron | 20.0% |
| !!! | TTGTTTTCGGTATATATTTT+AGG | + | chr5_3:4522486-4522505 | Msa0792780:intron | 20.0% |
| !!! | TGTTTTCGGTATATATTTTA+GGG | + | chr5_3:4522487-4522506 | Msa0792780:intron | 20.0% |
| !! | AATGTGCATATGATTATAAA+GGG | - | chr5_3:4522957-4522976 | None:intergenic | 20.0% |
| !! | AAAAATAAAGAAATTTCGTC+TGG | - | chr5_3:4523135-4523154 | None:intergenic | 20.0% |
| !!! | GACGAAATTTCTTTATTTTT+AGG | + | chr5_3:4523135-4523154 | Msa0792780:intron | 20.0% |
| !! | ATTGTTCAGTAAAATTATTG+TGG | - | chr5_3:4523480-4523499 | None:intergenic | 20.0% |
| !! | ACTACTGTTTAAATTATCAA+GGG | - | chr5_3:4523787-4523806 | None:intergenic | 20.0% |
| !! | TACTACTGTTTAAATTATCA+AGG | - | chr5_3:4523788-4523807 | None:intergenic | 20.0% |
| !!! | TATAGTTCTCTGAAATAAAA+GGG | - | chr5_3:4524183-4524202 | None:intergenic | 20.0% |
| !!! | ATATAGTTCTCTGAAATAAA+AGG | - | chr5_3:4524184-4524203 | None:intergenic | 20.0% |
| !!! | GTTTAATTTTCATAAACTGT+TGG | + | chr5_3:4524376-4524395 | Msa0792780:three_prime_UTR | 20.0% |
| !! | TGAAAATGCTAATAAGTTAT+AGG | - | chr5_3:4524553-4524572 | None:intergenic | 20.0% |
| ! | AAAATAAACCAATGATTGAG+AGG | - | chr5_3:4521370-4521389 | None:intergenic | 25.0% |
| !!! | TTGTTCTAAGTTTTGAAATC+TGG | + | chr5_3:4521481-4521500 | Msa0792780:intron | 25.0% |
| ! | AGCTTATTTATAACCATTCA+CGG | - | chr5_3:4521779-4521798 | None:intergenic | 25.0% |
| ! | ATCTAAATGCCTAATAGTAA+GGG | - | chr5_3:4521984-4522003 | None:intergenic | 25.0% |
| ! | AATCTAAATGCCTAATAGTA+AGG | - | chr5_3:4521985-4522004 | None:intergenic | 25.0% |
| !!! | TGATAAGTTGATAACTTCTA+TGG | + | chr5_3:4522046-4522065 | Msa0792780:intron | 25.0% |
| !! | TCAGATTTTCTTGCAAAATT+TGG | + | chr5_3:4522072-4522091 | Msa0792780:intron | 25.0% |
| ! | ATATTGAATGTTCTTCTAGA+TGG | + | chr5_3:4522400-4522419 | Msa0792780:intron | 25.0% |
| !!! | ACTTTGTAGTATGTTGTTTT+CGG | + | chr5_3:4522473-4522492 | Msa0792780:intron | 25.0% |
| !!! | TTTATTGTTGATGGTTAGTT+AGG | + | chr5_3:4522741-4522760 | Msa0792780:intron | 25.0% |
| ! | GTTTCATTGTCTTGAATTTA+CGG | + | chr5_3:4522892-4522911 | Msa0792780:intron | 25.0% |
| ! | TTTCATTGTCTTGAATTTAC+GGG | + | chr5_3:4522893-4522912 | Msa0792780:intron | 25.0% |
| ! | ATGTGCATATGATTATAAAG+GGG | - | chr5_3:4522956-4522975 | None:intergenic | 25.0% |
| ! | CAATGTGCATATGATTATAA+AGG | - | chr5_3:4522958-4522977 | None:intergenic | 25.0% |
| ! | AAAACATACCTAAAATGGAT+AGG | - | chr5_3:4523011-4523030 | None:intergenic | 25.0% |
| ! | AGCTTAAAACATACCTAAAA+TGG | - | chr5_3:4523016-4523035 | None:intergenic | 25.0% |
| !! | ATTCAGAAAATTTGAGACTT+AGG | - | chr5_3:4523104-4523123 | None:intergenic | 25.0% |
| !!! | TTTAGGACTTCCATTATTTT+TGG | + | chr5_3:4523152-4523171 | Msa0792780:intron | 25.0% |
| !!! | TTAGGACTTCCATTATTTTT+GGG | + | chr5_3:4523153-4523172 | Msa0792780:intron | 25.0% |
| ! | CAAAAGAAACCCAAAAATAA+TGG | - | chr5_3:4523165-4523184 | None:intergenic | 25.0% |
| ! | GTTAAATGGTTAAATGTATG+CGG | + | chr5_3:4523271-4523290 | Msa0792780:intron | 25.0% |
| ! | TTACAAAGTTAAATATGTGC+TGG | + | chr5_3:4523319-4523338 | Msa0792780:intron | 25.0% |
| !!! | GGAATATCATTTGTTTTGTT+AGG | + | chr5_3:4523340-4523359 | Msa0792780:intron | 25.0% |
| !! | ACTCTTTTATGGTGATTTAT+TGG | + | chr5_3:4523633-4523652 | Msa0792780:intron | 25.0% |
| ! | TGCCTAAAAGTGATATATTT+CGG | + | chr5_3:4524123-4524142 | Msa0792780:intron | 25.0% |
| !!! | TACCGAAATATATCACTTTT+AGG | - | chr5_3:4524128-4524147 | None:intergenic | 25.0% |
| !! | TTTTAGAGAACAATCTTGGT+TGG | + | chr5_3:4521246-4521265 | Msa0792780:five_prime_UTR | 30.0% |
| ! | AATCTTGGTTGGAACAATTT+TGG | + | chr5_3:4521257-4521276 | Msa0792780:five_prime_UTR | 30.0% |
| ! | AGCATAATCCCTTTTCATAT+AGG | + | chr5_3:4521534-4521553 | Msa0792780:intron | 30.0% |
| ! | GCATAATCCCTTTTCATATA+GGG | + | chr5_3:4521535-4521554 | Msa0792780:intron | 30.0% |
| AAACGAACCCTATATGAAAA+GGG | - | chr5_3:4521545-4521564 | None:intergenic | 30.0% | |
| AAAACGAACCCTATATGAAA+AGG | - | chr5_3:4521546-4521565 | None:intergenic | 30.0% | |
| GATTATTCATAAGCTTGCAA+AGG | - | chr5_3:4521688-4521707 | None:intergenic | 30.0% | |
| GCTTATTTATAACCATTCAC+GGG | - | chr5_3:4521778-4521797 | None:intergenic | 30.0% | |
| CTGAAAACAACTTATGAACA+TGG | + | chr5_3:4521895-4521914 | Msa0792780:intron | 30.0% | |
| !! | GATTTAGCTTTAATAGAGGT+TGG | + | chr5_3:4522001-4522020 | Msa0792780:intron | 30.0% |
| TTGCAAAATTTGGTATGCTA+AGG | + | chr5_3:4522082-4522101 | Msa0792780:intron | 30.0% | |
| AAGAAAGAAATGAGAACTAC+AGG | - | chr5_3:4522224-4522243 | None:intergenic | 30.0% | |
| CATGAACTAACGAAATATCT+TGG | - | chr5_3:4522273-4522292 | None:intergenic | 30.0% | |
| ! | CTGTAGGTATTTCATCATTT+TGG | + | chr5_3:4522305-4522324 | Msa0792780:intron | 30.0% |
| ! | TAGGTATTTCATCATTTTGG+TGG | + | chr5_3:4522308-4522327 | Msa0792780:intron | 30.0% |
| TTGTGTTTAAGCGAATCATT+GGG | + | chr5_3:4522353-4522372 | Msa0792780:intron | 30.0% | |
| ! | AAACAATGAAGTACTCGTAT+CGG | - | chr5_3:4522572-4522591 | None:intergenic | 30.0% |
| ATCAATCGAATCAATCATTG+AGG | + | chr5_3:4522718-4522737 | Msa0792780:intron | 30.0% | |
| TCATTGAGGTTTATTGTTGA+TGG | + | chr5_3:4522732-4522751 | Msa0792780:intron | 30.0% | |
| TGTGCATATGATTATAAAGG+GGG | - | chr5_3:4522955-4522974 | None:intergenic | 30.0% | |
| ! | TTTTGTAGCCTATCCATTTT+AGG | + | chr5_3:4523000-4523019 | Msa0792780:intron | 30.0% |
| CTTTAGTACTACAATCCTTA+TGG | + | chr5_3:4523034-4523053 | Msa0792780:intron | 30.0% | |
| !!! | TTTTATTTTGACGTTCCGTT+TGG | + | chr5_3:4523196-4523215 | Msa0792780:intron | 30.0% |
| AGAACATAAACACAACCAAA+CGG | - | chr5_3:4523214-4523233 | None:intergenic | 30.0% | |
| GATTCTGTTACGAAGTTAAA+TGG | + | chr5_3:4523257-4523276 | Msa0792780:intron | 30.0% | |
| GTTCAGTAAAATTATTGTGG+CGG | - | chr5_3:4523477-4523496 | None:intergenic | 30.0% | |
| CTGAACAATATCATATGACT+CGG | + | chr5_3:4523491-4523510 | Msa0792780:intron | 30.0% | |
| ! | AGATGCAATGAACTCTTTTA+TGG | + | chr5_3:4523622-4523641 | Msa0792780:intron | 30.0% |
| TATGGTGATTTATTGGTATG+TGG | + | chr5_3:4523640-4523659 | Msa0792780:intron | 30.0% | |
| !! | TGTTTGTTTGTTTGTTGTGA+TGG | + | chr5_3:4523668-4523687 | Msa0792780:intron | 30.0% |
| !! | TGTTTTTCAATGTGCAAACA+AGG | + | chr5_3:4523704-4523723 | Msa0792780:intron | 30.0% |
| TAATACCCTTGATCAAATGA+TGG | + | chr5_3:4523806-4523825 | Msa0792780:CDS | 30.0% | |
| ATCATCCATCATTTGATCAA+GGG | - | chr5_3:4523814-4523833 | None:intergenic | 30.0% | |
| CAGTAGTACAAGAAGAAATA+AGG | + | chr5_3:4523889-4523908 | Msa0792780:CDS | 30.0% | |
| ATTTCAGAGAACTATATCTC+AGG | + | chr5_3:4524187-4524206 | Msa0792780:intron | 30.0% | |
| GGCTATCTATGATGTATATT+AGG | + | chr5_3:4524315-4524334 | Msa0792780:three_prime_UTR | 30.0% | |
| ! | TTTAAAGTCATGCCCATATT+TGG | - | chr5_3:4524435-4524454 | None:intergenic | 30.0% |
| !! | TTAGCATTTTCAAGCACTAT+TGG | + | chr5_3:4524561-4524580 | Msa0792780:three_prime_UTR | 30.0% |
| !! | GTAATGATTTTGGTGAGTTG+TGG | - | chr5_3:4521329-4521348 | None:intergenic | 35.0% |
| ! | ATGACACAGCGTAATGATTT+TGG | - | chr5_3:4521339-4521358 | None:intergenic | 35.0% |
| AAAATCATTACGCTGTGTCA+TGG | + | chr5_3:4521338-4521357 | Msa0792780:exon | 35.0% | |
| GGTAAATTCCTCTCAATCAT+TGG | + | chr5_3:4521359-4521378 | Msa0792780:intron | 35.0% | |
| AAATCTGGTAAGCAACACTT+AGG | + | chr5_3:4521496-4521515 | Msa0792780:intron | 35.0% | |
| CAAAAATAAGCCGATCCAAA+CGG | + | chr5_3:4521751-4521770 | Msa0792780:intron | 35.0% | |
| TATAAGCTATCCAGAAGATG+TGG | + | chr5_3:4521865-4521884 | Msa0792780:intron | 35.0% | |
| !! | TGGCATAAGTTGTTTTCACA+AGG | + | chr5_3:4521915-4521934 | Msa0792780:intron | 35.0% |
| !! | GGCATAAGTTGTTTTCACAA+GGG | + | chr5_3:4521916-4521935 | Msa0792780:intron | 35.0% |
| !! | TTAGCTTTAATAGAGGTTGG+TGG | + | chr5_3:4522004-4522023 | Msa0792780:intron | 35.0% |
| AATGAGAACTACAGGTTCTA+TGG | - | chr5_3:4522216-4522235 | None:intergenic | 35.0% | |
| !!! | TTGGTGGATTTTGTACGTTT+AGG | + | chr5_3:4522324-4522343 | Msa0792780:intron | 35.0% |
| GTTGTGTTTAAGCGAATCAT+TGG | + | chr5_3:4522352-4522371 | Msa0792780:intron | 35.0% | |
| ! | AACAATGAAGTACTCGTATC+GGG | - | chr5_3:4522571-4522590 | None:intergenic | 35.0% |
| ! | TTGATGGTTAGTTAGGACTT+AGG | + | chr5_3:4522748-4522767 | Msa0792780:intron | 35.0% |
| ! | CAGTTGCATTTCTACCATTT+TGG | + | chr5_3:4522840-4522859 | Msa0792780:intron | 35.0% |
| AAAAGAGATGAGCTCCAAAA+TGG | - | chr5_3:4522857-4522876 | None:intergenic | 35.0% | |
| GTGCATATGATTATAAAGGG+GGG | - | chr5_3:4522954-4522973 | None:intergenic | 35.0% | |
| AGGCACTAGAAAACTACAAA+TGG | - | chr5_3:4523084-4523103 | None:intergenic | 35.0% | |
| ACATAACATAGAGTGGAACA+TGG | + | chr5_3:4523367-4523386 | Msa0792780:intron | 35.0% | |
| CATCATCCATCATTTGATCA+AGG | - | chr5_3:4523815-4523834 | None:intergenic | 35.0% | |
| GAAAAAAAACCCATAGCTGA+TGG | - | chr5_3:4524022-4524041 | None:intergenic | 35.0% | |
| AGAATTATCAACAAGCATGC+TGG | + | chr5_3:4524252-4524271 | Msa0792780:three_prime_UTR | 35.0% | |
| GAATTATCAACAAGCATGCT+GGG | + | chr5_3:4524253-4524272 | Msa0792780:three_prime_UTR | 35.0% | |
| ! | TATGGGCATGACTTTAAAAG+TGG | + | chr5_3:4524437-4524456 | Msa0792780:three_prime_UTR | 35.0% |
| TTGGTGAGTTGTGGAAAACA+CGG | - | chr5_3:4521320-4521339 | None:intergenic | 40.0% | |
| CAGCTTATTTCCACATCTTC+TGG | - | chr5_3:4521878-4521897 | None:intergenic | 40.0% | |
| CCTAATAGTAAGGGTCTCTA+TGG | - | chr5_3:4521975-4521994 | None:intergenic | 40.0% | |
| CCATAGAGACCCTTACTATT+AGG | + | chr5_3:4521972-4521991 | Msa0792780:intron | 40.0% | |
| TACAGGTTCTATGGTAAGAG+AGG | - | chr5_3:4522207-4522226 | None:intergenic | 40.0% | |
| !! | GTTCTTCTAGATGGATTGTG+TGG | + | chr5_3:4522409-4522428 | Msa0792780:intron | 40.0% |
| ! | TCATGTTGCTATTGACACCA+GGG | - | chr5_3:4522530-4522549 | None:intergenic | 40.0% |
| ATAGCAACATGACATGACTC+TGG | + | chr5_3:4522538-4522557 | Msa0792780:intron | 40.0% | |
| TAGCAACATGACATGACTCT+GGG | + | chr5_3:4522539-4522558 | Msa0792780:intron | 40.0% | |
| CCCTATTCAGCTTAGTTGTT+GGG | - | chr5_3:4522617-4522636 | None:intergenic | 40.0% | |
| CCCAACAACTAAGCTGAATA+GGG | + | chr5_3:4522614-4522633 | Msa0792780:intron | 40.0% | |
| TCCCTATTCAGCTTAGTTGT+TGG | - | chr5_3:4522618-4522637 | None:intergenic | 40.0% | |
| CTCATATTCCCACTCACTAA+CGG | - | chr5_3:4522677-4522696 | None:intergenic | 40.0% | |
| GTTAGTGAGTGGGAATATGA+GGG | + | chr5_3:4522676-4522695 | Msa0792780:intron | 40.0% | |
| TTAGGCGAGTAGTTTCTCTT+TGG | + | chr5_3:4522766-4522785 | Msa0792780:intron | 40.0% | |
| !! | GTAGAAGGTATTTCCATAGC+AGG | - | chr5_3:4522932-4522951 | None:intergenic | 40.0% |
| TGATTATAAAGGGGGGTAGA+AGG | - | chr5_3:4522947-4522966 | None:intergenic | 40.0% | |
| ! | ATTGCCAATGCTTTTACGAG+TGG | + | chr5_3:4522974-4522993 | Msa0792780:intron | 40.0% |
| ! | AATGCCACTCGTAAAAGCAT+TGG | - | chr5_3:4522981-4523000 | None:intergenic | 40.0% |
| AGTACTACAATCCTTATGGC+TGG | + | chr5_3:4523038-4523057 | Msa0792780:intron | 40.0% | |
| CGGTAGAATAAGTAGCTACA+TGG | + | chr5_3:4523291-4523310 | Msa0792780:intron | 40.0% | |
| AGGACACACATAACATAGAG+TGG | + | chr5_3:4523360-4523379 | Msa0792780:intron | 40.0% | |
| CAGTAAAATTATTGTGGCGG+TGG | - | chr5_3:4523474-4523493 | None:intergenic | 40.0% | |
| GAGTTCATTGCATCTCACAA+TGG | - | chr5_3:4523617-4523636 | None:intergenic | 40.0% | |
| !! | TTGATAGTGCAGTGCAAAAG+TGG | + | chr5_3:4523758-4523777 | Msa0792780:intron | 40.0% |
| ! | TGTTTTCTCTCACACCATAC+TGG | - | chr5_3:4523867-4523886 | None:intergenic | 40.0% |
| AGTATGGTGTGAGAGAAAAC+AGG | + | chr5_3:4523866-4523885 | Msa0792780:CDS | 40.0% | |
| TCTGCAACTTATGTCAGTTC+AGG | + | chr5_3:4523977-4523996 | Msa0792780:CDS | 40.0% | |
| CAACTTATGTCAGTTCAGGT+AGG | + | chr5_3:4523981-4524000 | Msa0792780:intron | 40.0% | |
| ! | GCTGATGGACAAAGAGTTAA+TGG | - | chr5_3:4524007-4524026 | None:intergenic | 40.0% |
| AACTCTTTGTCCATCAGCTA+TGG | + | chr5_3:4524009-4524028 | Msa0792780:intron | 40.0% | |
| ACTCTTTGTCCATCAGCTAT+GGG | + | chr5_3:4524010-4524029 | Msa0792780:intron | 40.0% | |
| GGCACATCAAAGCCAAATAT+GGG | + | chr5_3:4524420-4524439 | Msa0792780:three_prime_UTR | 40.0% | |
| ATCAATTGCTCGAGCAGGAA+TGG | - | chr5_3:4521285-4521304 | None:intergenic | 45.0% | |
| CATGTTGTTGATCGAGCTGT+AGG | + | chr5_3:4522289-4522308 | Msa0792780:intron | 45.0% | |
| TTAAGCGAATCATTGGGCAG+TGG | + | chr5_3:4522359-4522378 | Msa0792780:intron | 45.0% | |
| AATATGATCCTCACATCCCC+TGG | + | chr5_3:4522510-4522529 | Msa0792780:intron | 45.0% | |
| ! | CATGTTGCTATTGACACCAG+GGG | - | chr5_3:4522529-4522548 | None:intergenic | 45.0% |
| ! | GTCATGTTGCTATTGACACC+AGG | - | chr5_3:4522531-4522550 | None:intergenic | 45.0% |
| GCCCAACAACTAAGCTGAAT+AGG | + | chr5_3:4522613-4522632 | Msa0792780:intron | 45.0% | |
| ACTCAACTCCGTTAGTGAGT+GGG | + | chr5_3:4522666-4522685 | Msa0792780:intron | 45.0% | |
| CGTTAGTGAGTGGGAATATG+AGG | + | chr5_3:4522675-4522694 | Msa0792780:intron | 45.0% | |
| !! | TGGTTAAGAGCATTGTGCTC+TGG | + | chr5_3:4522786-4522805 | Msa0792780:intron | 45.0% |
| !! | AAGAGCATTGTGCTCTGGTT+AGG | + | chr5_3:4522791-4522810 | Msa0792780:intron | 45.0% |
| GGTTAGGAGTTCTTCAACTC+TGG | + | chr5_3:4522807-4522826 | Msa0792780:intron | 45.0% | |
| TTCCATCACAATGCCTGCTA+TGG | + | chr5_3:4522916-4522935 | Msa0792780:intron | 45.0% | |
| ! | TTCCATAGCAGGCATTGTGA+TGG | - | chr5_3:4522921-4522940 | None:intergenic | 45.0% |
| TCATCAGTTCTCCAGCCATA+AGG | - | chr5_3:4523052-4523071 | None:intergenic | 45.0% | |
| !!! | CATACTGGTTTTTGTGCTGC+AGG | - | chr5_3:4523852-4523871 | None:intergenic | 45.0% |
| CTGCAGCACAAAAACCAGTA+TGG | + | chr5_3:4523850-4523869 | Msa0792780:CDS | 45.0% | |
| !! | GCGACATAGGTACTTTTTGC+AGG | - | chr5_3:4523930-4523949 | None:intergenic | 45.0% |
| GAGAACTATATCTCAGGAGC+AGG | + | chr5_3:4524193-4524212 | Msa0792780:intron | 45.0% | |
| TATATCTCAGGAGCAGGAGT+TGG | + | chr5_3:4524199-4524218 | Msa0792780:CDS | 45.0% | |
| !!! | GAGTTGGAGTTGCTTTTTGC+TGG | + | chr5_3:4524215-4524234 | Msa0792780:CDS | 45.0% |
| CGGCACATCAAAGCCAAATA+TGG | + | chr5_3:4524419-4524438 | Msa0792780:three_prime_UTR | 45.0% | |
| TCCTGCTCGAGCAATTGATC+AGG | + | chr5_3:4521286-4521305 | Msa0792780:five_prime_UTR | 50.0% | |
| TCCTGATCAATTGCTCGAGC+AGG | - | chr5_3:4521290-4521309 | None:intergenic | 50.0% | |
| ATTCACGGGTCCGTTTGGAT+CGG | - | chr5_3:4521764-4521783 | None:intergenic | 50.0% | |
| TAACCATTCACGGGTCCGTT+TGG | - | chr5_3:4521769-4521788 | None:intergenic | 50.0% | |
| TATTGACACCAGGGGATGTG+AGG | - | chr5_3:4522521-4522540 | None:intergenic | 50.0% | |
| !! | GTTGTTGGGCTCTGAAGCAT+GGG | - | chr5_3:4522603-4522622 | None:intergenic | 50.0% |
| !! | AGTTGTTGGGCTCTGAAGCA+TGG | - | chr5_3:4522604-4522623 | None:intergenic | 50.0% |
| AGGGAAGTTAGTTGCTGACG+TGG | + | chr5_3:4522633-4522652 | Msa0792780:intron | 50.0% | |
| ! | AACGGAGTTGAGTGGCTCTA+AGG | - | chr5_3:4522659-4522678 | None:intergenic | 50.0% |
| CACTCACTAACGGAGTTGAG+TGG | - | chr5_3:4522667-4522686 | None:intergenic | 50.0% | |
| CACTCAACTCCGTTAGTGAG+TGG | + | chr5_3:4522665-4522684 | Msa0792780:intron | 50.0% | |
| TGGGAATATGAGGGCAGCAA+GGG | + | chr5_3:4522685-4522704 | Msa0792780:intron | 50.0% | |
| CTTGAGACGATGTGCGACAT+AGG | - | chr5_3:4523943-4523962 | None:intergenic | 50.0% | |
| CTATGTCGCACATCGTCTCA+AGG | + | chr5_3:4523941-4523960 | Msa0792780:CDS | 50.0% | |
| GAGTTGTGGAAAACACGGCG+AGG | - | chr5_3:4521315-4521334 | None:intergenic | 55.0% | |
| GATCCAAACGGACCCGTGAA+TGG | + | chr5_3:4521763-4521782 | Msa0792780:intron | 55.0% | |
| GTGGGAATATGAGGGCAGCA+AGG | + | chr5_3:4522684-4522703 | Msa0792780:intron | 55.0% | |
| AACCTTCAAGCATGCCTGCG+CGG | - | chr5_3:4524346-4524365 | None:intergenic | 55.0% | |
| TGAGGGCAGCAAGGGTAGTG+AGG | + | chr5_3:4522693-4522712 | Msa0792780:intron | 60.0% | |
| GAGGGCAGCAAGGGTAGTGA+GGG | + | chr5_3:4522694-4522713 | Msa0792780:intron | 60.0% | |
| TATATTAGGCGCAGCCGCGC+AGG | + | chr5_3:4524329-4524348 | Msa0792780:three_prime_UTR | 60.0% | |
| AGCCGCGCAGGCATGCTTGA+AGG | + | chr5_3:4524341-4524360 | Msa0792780:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 4521245 | 4524600 | 4521245 | ID=Msa0792780;Name=Msa0792780 |
| chr5_3 | mRNA | 4521245 | 4524600 | 4521245 | ID=Msa0792780-mRNA-1;Parent=Msa0792780;Name=Msa0792780-mRNA-1;_AED=0.00;_eAED=0.00;_QI=112|1|1|1|0.5|0.66|3|350|97 |
| chr5_3 | exon | 4521245 | 4521359 | 4521245 | ID=Msa0792780-mRNA-1:exon:1751;Parent=Msa0792780-mRNA-1 |
| chr5_3 | exon | 4523765 | 4523998 | 4523765 | ID=Msa0792780-mRNA-1:exon:1752;Parent=Msa0792780-mRNA-1 |
| chr5_3 | exon | 4524194 | 4524600 | 4524194 | ID=Msa0792780-mRNA-1:exon:1753;Parent=Msa0792780-mRNA-1 |
| chr5_3 | five_prime_UTR | 4521245 | 4521356 | 4521245 | ID=Msa0792780-mRNA-1:five_prime_utr;Parent=Msa0792780-mRNA-1 |
| chr5_3 | CDS | 4521357 | 4521359 | 4521357 | ID=Msa0792780-mRNA-1:cds;Parent=Msa0792780-mRNA-1 |
| chr5_3 | CDS | 4523765 | 4523998 | 4523765 | ID=Msa0792780-mRNA-1:cds;Parent=Msa0792780-mRNA-1 |
| chr5_3 | CDS | 4524194 | 4524250 | 4524194 | ID=Msa0792780-mRNA-1:cds;Parent=Msa0792780-mRNA-1 |
| chr5_3 | three_prime_UTR | 4524251 | 4524600 | 4524251 | ID=Msa0792780-mRNA-1:three_prime_utr;Parent=Msa0792780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
