Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383400 | XP_003603570.1 | 100.000 | 232 | 0 | 0 | 1 | 232 | 1 | 232 | 1.68e-169 | 476 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383400 | sp|Q8LD27|PSB6_ARATH | 88.210 | 229 | 25 | 1 | 4 | 230 | 3 | 231 | 1.39e-149 | 418 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383400 | B7FGZ8 | 100.000 | 232 | 0 | 0 | 1 | 232 | 1 | 232 | 8.01e-170 | 476 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024210 | Msa0383400 | 0.808483 | 3.029048e-50 | -8.615850e-47 |
| Msa0120010 | Msa0383400 | 0.826342 | 2.858979e-54 | -8.615850e-47 |
| Msa0120020 | Msa0383400 | 0.826490 | 2.636955e-54 | -8.615850e-47 |
| Msa0140510 | Msa0383400 | 0.808100 | 3.655332e-50 | -8.615850e-47 |
| Msa0170110 | Msa0383400 | 0.821922 | 3.121054e-53 | -8.615850e-47 |
| Msa0215320 | Msa0383400 | 0.807764 | 4.309849e-50 | -8.615850e-47 |
| Msa0223410 | Msa0383400 | 0.831612 | 1.512523e-55 | -8.615850e-47 |
| Msa0381600 | Msa0383400 | 0.828297 | 9.722705e-55 | -8.615850e-47 |
| Msa0381610 | Msa0383400 | 0.817643 | 2.964464e-52 | -8.615850e-47 |
| Msa0383400 | Msa0389610 | 0.828483 | 8.766145e-55 | -8.615850e-47 |
| Msa0383400 | Msa0392040 | 0.810205 | 1.294181e-50 | -8.615850e-47 |
| Msa0383400 | Msa0425790 | -0.803050 | 4.193295e-49 | -8.615850e-47 |
| Msa0383400 | Msa0433410 | 0.826497 | 2.626041e-54 | -8.615850e-47 |
| Msa0383400 | Msa0444750 | 0.811240 | 7.728595e-51 | -8.615850e-47 |
| Msa0383400 | Msa0469940 | 0.815731 | 7.953475e-52 | -8.615850e-47 |
| Msa0383400 | Msa0472960 | 0.802316 | 5.945304e-49 | -8.615850e-47 |
| Msa0383400 | Msa0528610 | 0.811486 | 6.835717e-51 | -8.615850e-47 |
| Msa0383400 | Msa0532810 | 0.801283 | 9.687212e-49 | -8.615850e-47 |
| Msa0383400 | Msa0585230 | -0.803981 | 2.689629e-49 | -8.615850e-47 |
| Msa0383400 | Msa0663240 | -0.806614 | 7.551130e-50 | -8.615850e-47 |
| Msa0383400 | Msa0678800 | 0.809149 | 2.181906e-50 | -8.615850e-47 |
| Msa0383400 | Msa0688480 | -0.804949 | 1.689594e-49 | -8.615850e-47 |
| Msa0383400 | Msa0745260 | 0.803905 | 2.788680e-49 | -8.615850e-47 |
| Msa0383400 | Msa0757450 | 0.813032 | 3.142116e-51 | -8.615850e-47 |
| Msa0383400 | Msa0757500 | 0.819879 | 9.211804e-53 | -8.615850e-47 |
| Msa0383400 | Msa0844490 | -0.800557 | 1.362922e-48 | -8.615850e-47 |
| Msa0383400 | Msa0864470 | 0.805446 | 1.329560e-49 | -8.615850e-47 |
| Msa0383400 | Msa0927380 | -0.816628 | 5.013325e-52 | -8.615850e-47 |
| Msa0383400 | Msa0942080 | 0.803571 | 3.271041e-49 | -8.615850e-47 |
| Msa0383400 | Msa0942550 | 0.818411 | 1.987429e-52 | -8.615850e-47 |
| Msa0383400 | Msa0946280 | 0.825705 | 4.051964e-54 | -8.615850e-47 |
| Msa0383400 | Msa0946690 | 0.853297 | 2.622046e-61 | -8.615850e-47 |
| Msa0383400 | Msa0976670 | -0.821516 | 3.873238e-53 | -8.615850e-47 |
| Msa0383400 | Msa0999960 | 0.820922 | 5.310614e-53 | -8.615850e-47 |
| Msa0383400 | Msa1019840 | 0.809474 | 1.858438e-50 | -8.615850e-47 |
| Msa0383400 | Msa1029080 | 0.847643 | 1.015349e-59 | -8.615850e-47 |
| Msa0383400 | Msa1075220 | 0.826379 | 2.802283e-54 | -8.615850e-47 |
| Msa0383400 | Msa1076810 | 0.801653 | 8.134374e-49 | -8.615850e-47 |
| Msa0383400 | Msa1100130 | 0.804671 | 1.931632e-49 | -8.615850e-47 |
| Msa0383400 | Msa1116130 | 0.816675 | 4.894417e-52 | -8.615850e-47 |
| Msa0383400 | Msa1131940 | 0.800026 | 1.748109e-48 | -8.615850e-47 |
| Msa0383400 | Msa1139000 | 0.818017 | 2.440613e-52 | -8.615850e-47 |
| Msa0383400 | Msa1144720 | 0.825230 | 5.249383e-54 | -8.615850e-47 |
| Msa0383400 | Msa1156170 | 0.847295 | 1.266134e-59 | -8.615850e-47 |
| Msa0383400 | Msa1162550 | 0.815872 | 7.397825e-52 | -8.615850e-47 |
| Msa0383400 | Msa1163590 | 0.819490 | 1.130356e-52 | -8.615850e-47 |
| Msa0383400 | Msa1183100 | 0.807586 | 4.700911e-50 | -8.615850e-47 |
| Msa0383400 | Msa1191050 | 0.806440 | 8.216414e-50 | -8.615850e-47 |
| Msa0383400 | Msa1207470 | 0.854990 | 8.516857e-62 | -8.615850e-47 |
| Msa0383400 | Msa1208650 | 0.825102 | 5.629528e-54 | -8.615850e-47 |
| Msa0383400 | Msa1211140 | 0.815185 | 1.052403e-51 | -8.615850e-47 |
| Msa0383400 | Msa1244720 | 0.801182 | 1.015821e-48 | -8.615850e-47 |
| Msa0383400 | Msa1254250 | 0.809442 | 1.888760e-50 | -8.615850e-47 |
| Msa0383400 | Msa1257800 | 0.871912 | 4.759529e-67 | -8.615850e-47 |
| Msa0383400 | Msa1259590 | 0.806561 | 7.747765e-50 | -8.615850e-47 |
| Msa0383400 | Msa1299290 | 0.809498 | 1.836583e-50 | -8.615850e-47 |
| Msa0383400 | Msa1325860 | 0.824684 | 7.065310e-54 | -8.615850e-47 |
| Msa0383400 | Msa1332040 | 0.803579 | 3.259257e-49 | -8.615850e-47 |
| Msa0383400 | Msa1376160 | 0.813293 | 2.754301e-51 | -8.615850e-47 |
| Msa0383400 | Msa1403480 | -0.807880 | 4.072200e-50 | -8.615850e-47 |
| Msa0383400 | Msa1417810 | 0.804296 | 2.313002e-49 | -8.615850e-47 |
| Msa0383400 | Msa1443060 | -0.804487 | 2.110006e-49 | -8.615850e-47 |
| Msa0383400 | Msa1445400 | 0.803831 | 2.889591e-49 | -8.615850e-47 |
| Msa0383400 | Msa1449350 | 0.805143 | 1.538904e-49 | -8.615850e-47 |
| Msa0383400 | Msa1451620 | 0.838808 | 2.307141e-57 | -8.615850e-47 |
| Msa0383400 | Msa1453560 | -0.810652 | 1.036263e-50 | -8.615850e-47 |
| Msa0302580 | Msa0383400 | 0.831009 | 2.128492e-55 | -8.615850e-47 |
| Msa0306210 | Msa0383400 | 0.814051 | 1.875508e-51 | -8.615850e-47 |
| Msa0344690 | Msa0383400 | 0.812701 | 3.713480e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383400 | MtrunA17_Chr3g0139211 | 100.000 | 232 | 0 | 0 | 1 | 232 | 1 | 232 | 1.54e-173 | 476 |
| Msa0383400 | MtrunA17_Chr7g0226711 | 31.282 | 195 | 131 | 2 | 1 | 193 | 24 | 217 | 9.51e-29 | 109 |
| Msa0383400 | MtrunA17_Chr7g0228681 | 30.928 | 194 | 131 | 2 | 1 | 192 | 24 | 216 | 1.88e-28 | 108 |
| Msa0383400 | MtrunA17_Chr3g0116161 | 31.351 | 185 | 125 | 2 | 13 | 196 | 54 | 237 | 1.74e-21 | 90.1 |
| Msa0383400 | MtrunA17_Chr5g0435161 | 27.273 | 209 | 126 | 4 | 13 | 201 | 15 | 217 | 2.52e-16 | 75.1 |
| Msa0383400 | MtrunA17_Chr2g0328831 | 27.273 | 209 | 126 | 4 | 13 | 201 | 15 | 217 | 1.15e-15 | 73.2 |
| Msa0383400 | MtrunA17_Chr5g0394931 | 26.087 | 161 | 117 | 1 | 15 | 173 | 3 | 163 | 1.51e-11 | 61.6 |
| Msa0383400 | MtrunA17_Chr3g0138711 | 92.593 | 27 | 2 | 0 | 116 | 142 | 20 | 46 | 3.15e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383400 | AT4G31300.3 | 88.210 | 229 | 25 | 1 | 4 | 230 | 3 | 231 | 1.41e-150 | 418 |
| Msa0383400 | AT4G31300.1 | 88.210 | 229 | 25 | 1 | 4 | 230 | 3 | 231 | 1.41e-150 | 418 |
| Msa0383400 | AT4G31300.2 | 87.826 | 230 | 25 | 2 | 4 | 230 | 3 | 232 | 4.53e-149 | 414 |
| Msa0383400 | AT5G40580.1 | 34.254 | 181 | 118 | 1 | 13 | 193 | 39 | 218 | 2.06e-29 | 111 |
| Msa0383400 | AT5G40580.2 | 34.254 | 181 | 118 | 1 | 13 | 193 | 39 | 218 | 2.06e-29 | 111 |
| Msa0383400 | AT3G27430.2 | 33.702 | 181 | 119 | 1 | 13 | 193 | 39 | 218 | 7.35e-29 | 110 |
| Msa0383400 | AT3G27430.1 | 33.889 | 180 | 118 | 1 | 13 | 192 | 39 | 217 | 1.11e-28 | 109 |
| Msa0383400 | AT5G40580.4 | 33.529 | 170 | 112 | 1 | 24 | 193 | 44 | 212 | 3.18e-25 | 100 |
| Msa0383400 | AT5G40580.3 | 33.529 | 170 | 112 | 1 | 24 | 193 | 44 | 212 | 3.18e-25 | 100 |
| Msa0383400 | AT3G27430.3 | 32.941 | 170 | 113 | 1 | 24 | 193 | 44 | 212 | 9.82e-25 | 99.0 |
| Msa0383400 | AT1G13060.1 | 31.937 | 191 | 128 | 2 | 10 | 199 | 54 | 243 | 2.65e-24 | 97.8 |
| Msa0383400 | AT3G26340.1 | 30.851 | 188 | 128 | 2 | 13 | 199 | 57 | 243 | 1.11e-21 | 90.9 |
| Msa0383400 | AT1G13060.3 | 28.372 | 215 | 128 | 3 | 10 | 199 | 54 | 267 | 3.29e-19 | 84.7 |
| Msa0383400 | AT1G13060.2 | 28.372 | 215 | 128 | 3 | 10 | 199 | 54 | 267 | 3.29e-19 | 84.7 |
| Msa0383400 | AT3G60820.1 | 25.366 | 205 | 127 | 4 | 13 | 197 | 15 | 213 | 1.47e-13 | 67.8 |
| Msa0383400 | AT3G60820.3 | 25.366 | 205 | 127 | 4 | 13 | 197 | 15 | 213 | 1.47e-13 | 67.8 |
| Msa0383400 | AT4G14800.1 | 24.845 | 161 | 119 | 1 | 15 | 173 | 3 | 163 | 9.24e-11 | 59.7 |
Find 87 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCGACCTTGTCCATGTTTC+TGG | 0.138949 | 3_1:+86298790 | None:intergenic |
| CCTCCTCATGTTGTGTACTA+TGG | 0.217474 | 3_1:-86295080 | Msa0383400:three_prime_UTR |
| TATGAAGGCGGTCAGATTTA+TGG | 0.223743 | 3_1:-86297366 | Msa0383400:CDS |
| CAATGAACATATGAAGAAAT+TGG | 0.232643 | 3_1:-86295221 | Msa0383400:exon |
| ATCACCTGGGTAGAAATTTC+TGG | 0.240801 | 3_1:+86295314 | None:intergenic |
| CTTCATATGTTCATTGGCTC+TGG | 0.264442 | 3_1:+86295228 | None:intergenic |
| CTTGGTCATACCGTCTTTCC+AGG | 0.277307 | 3_1:+86296262 | None:intergenic |
| TACAACGGCGGCGTTGTTCT+TGG | 0.277415 | 3_1:-86298722 | Msa0383400:CDS |
| AACTCATTGCTGGACATTCT+TGG | 0.313902 | 3_1:-86295255 | Msa0383400:CDS |
| GCAGCAACCTTGACTGTTGC+AGG | 0.328240 | 3_1:+86297845 | None:intergenic |
| TGGCAGAATAACTTACAAAC+TGG | 0.333500 | 3_1:-86297414 | Msa0383400:intron |
| TCAACAGGATCTAGTCAAAA+AGG | 0.335689 | 3_1:-86295514 | Msa0383400:intron |
| GTGTAATTGATTATATCTTT+TGG | 0.337229 | 3_1:-86295128 | Msa0383400:three_prime_UTR |
| CAATTTCTTCATATGTTCAT+TGG | 0.346922 | 3_1:+86295222 | None:intergenic |
| TTCATATGTTCATTGGCTCT+GGG | 0.365565 | 3_1:+86295229 | None:intergenic |
| TCCAGTTCATCATGCCATAT+TGG | 0.366769 | 3_1:+86295285 | None:intergenic |
| TCCAATATGGCATGATGAAC+TGG | 0.367474 | 3_1:-86295286 | Msa0383400:CDS |
| AGGTTGCTGCAAACCTTGTT+CGG | 0.383622 | 3_1:-86297832 | Msa0383400:CDS |
| TTACAAACTGGGTTAATTGT+TGG | 0.391047 | 3_1:-86297402 | Msa0383400:CDS |
| TGGGTTAATTGTTGGTGGTT+GGG | 0.415254 | 3_1:-86297394 | Msa0383400:CDS |
| GGAGGCTCACAACTCATTGC+TGG | 0.419158 | 3_1:-86295265 | Msa0383400:CDS |
| GTACAACTGCAAACTACAAA+AGG | 0.420267 | 3_1:-86295043 | Msa0383400:three_prime_UTR |
| TTTGCAGGCTGCAGATTCTC+AGG | 0.422283 | 3_1:-86298058 | Msa0383400:intron |
| AATGTCTACGTCTGTCGCTC+TGG | 0.427619 | 3_1:-86298540 | Msa0383400:CDS |
| TCATACCGTCTTTCCAGGCT+TGG | 0.433263 | 3_1:+86296267 | None:intergenic |
| AAGAACAACGCCGCCGTTGT+AGG | 0.434923 | 3_1:+86298724 | None:intergenic |
| AATGAACATATGAAGAAATT+GGG | 0.436979 | 3_1:-86295220 | Msa0383400:exon |
| TCTGGGTCCAGTTACTTGTA+TGG | 0.446754 | 3_1:-86296299 | Msa0383400:CDS |
| GATGGTGGTTCCCATGGAAT+GGG | 0.459908 | 3_1:+86298757 | None:intergenic |
| CTGGGTTAATTGTTGGTGGT+TGG | 0.462258 | 3_1:-86297395 | Msa0383400:CDS |
| CAGGTGATCAACTTCCAATA+TGG | 0.465504 | 3_1:-86295299 | Msa0383400:CDS |
| CTCCTCATGTTGTGTACTAT+GGG | 0.470372 | 3_1:-86295079 | Msa0383400:three_prime_UTR |
| AAGAAGTTAATTACCAGTGC+TGG | 0.483368 | 3_1:+86298685 | None:intergenic |
| TTTCAATGCTCCCCATTCCA+TGG | 0.486263 | 3_1:-86298768 | Msa0383400:CDS |
| CAAATACCTCCAATAGCAAA+AGG | 0.491340 | 3_1:+86297312 | None:intergenic |
| CCATACCTCAGCTTCATCCT+TGG | 0.493435 | 3_1:+86296244 | None:intergenic |
| ACCGATGATGGTGGTTCCCA+TGG | 0.496891 | 3_1:+86298751 | None:intergenic |
| TGATGGTGGTTCCCATGGAA+TGG | 0.497886 | 3_1:+86298756 | None:intergenic |
| TTGAGGGTGTAGAAATTAAG+AGG | 0.501500 | 3_1:+86298872 | None:intergenic |
| CGATAAATAGTTCAGAGAAA+AGG | 0.502938 | 3_1:+86295156 | None:intergenic |
| GCCGACTCTCGAACCAGCAC+TGG | 0.508306 | 3_1:-86298698 | Msa0383400:intron |
| GTTAAACTGAATCGAATTGA+GGG | 0.509304 | 3_1:+86298856 | None:intergenic |
| CAGATTTATGGAGTTCCTCT+AGG | 0.514408 | 3_1:-86297354 | Msa0383400:CDS |
| AGAAATTAAGAGGTACTACT+TGG | 0.514787 | 3_1:+86298882 | None:intergenic |
| CTACGTCTGTCGCTCTGGAT+CGG | 0.523938 | 3_1:-86298535 | Msa0383400:intron |
| GATGTCTTACAATGACTGTT+CGG | 0.526951 | 3_1:+86295445 | None:intergenic |
| GGTTAAACTGAATCGAATTG+AGG | 0.528526 | 3_1:+86298855 | None:intergenic |
| TTCAATGCTCCCCATTCCAT+GGG | 0.536391 | 3_1:-86298767 | Msa0383400:CDS |
| CAAACTGGGTTAATTGTTGG+TGG | 0.536602 | 3_1:-86297399 | Msa0383400:CDS |
| CATATTGGAAGTTGATCACC+TGG | 0.547295 | 3_1:+86295300 | None:intergenic |
| CCACTTACGTGTGTTGGTGA+AGG | 0.547404 | 3_1:+86298010 | None:intergenic |
| GCGAAAGAGAAGAAGAAAAG+AGG | 0.548029 | 3_1:+86298830 | None:intergenic |
| GGCAGAATAACTTACAAACT+GGG | 0.553451 | 3_1:-86297413 | Msa0383400:intron |
| TCACTTGCCATTGCTCGTGA+TGG | 0.553661 | 3_1:-86295486 | Msa0383400:CDS |
| TACAACTGCAAACTACAAAA+GGG | 0.554051 | 3_1:-86295042 | Msa0383400:three_prime_UTR |
| AAGAGAAGAAGAAAAGAGGC+TGG | 0.555251 | 3_1:+86298834 | None:intergenic |
| ACCAGTGCTGGTTCGAGAGT+CGG | 0.558562 | 3_1:+86298697 | None:intergenic |
| TCATATGTTCATTGGCTCTG+GGG | 0.561140 | 3_1:+86295230 | None:intergenic |
| ATCGGTGTTACCTACAACGG+CGG | 0.569422 | 3_1:-86298734 | Msa0383400:CDS |
| TCCATGGGAACCACCATCAT+CGG | 0.570798 | 3_1:-86298752 | Msa0383400:CDS |
| GGTGGTTGGGACAAGTATGA+AGG | 0.571227 | 3_1:-86297381 | Msa0383400:CDS |
| GTTGTAGGTAACACCGATGA+TGG | 0.577085 | 3_1:+86298739 | None:intergenic |
| TCAGAGAAAAGGTCAACAGA+GGG | 0.578860 | 3_1:+86295167 | None:intergenic |
| TTTGACCAAGCCTGGAAAGA+CGG | 0.579591 | 3_1:-86296272 | Msa0383400:CDS |
| ACTAGCACCATCACGAGCAA+TGG | 0.588426 | 3_1:+86295479 | None:intergenic |
| AATTAGCCACTTACGTGTGT+TGG | 0.591930 | 3_1:+86298004 | None:intergenic |
| TCCCTTGCAGATAAATTCAG+AGG | 0.616499 | 3_1:-86295343 | Msa0383400:intron |
| ATTGCTCGTGATGGTGCTAG+TGG | 0.618953 | 3_1:-86295477 | Msa0383400:CDS |
| TTCAGAGAAAAGGTCAACAG+AGG | 0.621167 | 3_1:+86295166 | None:intergenic |
| CCCTTGCAGATAAATTCAGA+GGG | 0.623795 | 3_1:-86295342 | Msa0383400:intron |
| TACCCATAGTACACAACATG+AGG | 0.625208 | 3_1:+86295077 | None:intergenic |
| TGGACAACCTGCAACAGTCA+AGG | 0.625376 | 3_1:-86297852 | Msa0383400:CDS |
| TATATGCGAGAAGCCGAACA+AGG | 0.628109 | 3_1:+86297819 | None:intergenic |
| ATTTATGGAGTTCCTCTAGG+TGG | 0.628981 | 3_1:-86297351 | Msa0383400:CDS |
| TGTACAATTGTTCCACCTAG+AGG | 0.629585 | 3_1:+86297339 | None:intergenic |
| GTGACCAGAAATTTCTACCC+AGG | 0.644173 | 3_1:-86295318 | Msa0383400:CDS |
| ATGGTGGTTCCCATGGAATG+GGG | 0.644231 | 3_1:+86298758 | None:intergenic |
| CCATAGTACACAACATGAGG+AGG | 0.655437 | 3_1:+86295080 | None:intergenic |
| GCTCGTGATGGTGCTAGTGG+CGG | 0.657121 | 3_1:-86295474 | Msa0383400:CDS |
| CTGGAAAGACGGTATGACCA+AGG | 0.661595 | 3_1:-86296261 | Msa0383400:CDS |
| ATCATCGGTGTTACCTACAA+CGG | 0.663396 | 3_1:-86298737 | Msa0383400:CDS |
| AATATGGCATGATGAACTGG+AGG | 0.666663 | 3_1:-86295283 | Msa0383400:CDS |
| TATGACCAAGGATGAAGCTG+AGG | 0.674602 | 3_1:-86296249 | Msa0383400:intron |
| GTAGGTAACACCGATGATGG+TGG | 0.683839 | 3_1:+86298742 | None:intergenic |
| GGTTGGGACAAGTATGAAGG+CGG | 0.702895 | 3_1:-86297378 | Msa0383400:CDS |
| GCTTCTCGCATATAACAACA+AGG | 0.720146 | 3_1:-86297810 | Msa0383400:intron |
| ATATTGGAAGTTGATCACCT+GGG | 0.757859 | 3_1:+86295301 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATATATATAGTCATTT+AGG | - | chr3_1:86297777-86297796 | Msa0383400:intron | 10.0% |
| !! | ATAATATATATAGTCATTTA+GGG | - | chr3_1:86297778-86297797 | Msa0383400:intron | 10.0% |
| !! | TCTTACTAAAATTAAGTTTA+TGG | + | chr3_1:86295703-86295722 | None:intergenic | 15.0% |
| !!! | TTATGTTCTATATTTTTAAC+AGG | - | chr3_1:86298108-86298127 | Msa0383400:intron | 15.0% |
| !!! | TATTTTTTTATGATGTGTTT+TGG | - | chr3_1:86298212-86298231 | Msa0383400:intron | 15.0% |
| !!! | ATTTTTTTATGATGTGTTTT+GGG | - | chr3_1:86298213-86298232 | Msa0383400:intron | 15.0% |
| !!! | TTAAGATGATAATTTTTAAG+TGG | + | chr3_1:86298889-86298908 | None:intergenic | 15.0% |
| !!! | AGGTAAATTGATTTTGATTA+GGG | + | chr3_1:86295232-86295251 | None:intergenic | 20.0% |
| !!! | AAGGTAAATTGATTTTGATT+AGG | + | chr3_1:86295233-86295252 | None:intergenic | 20.0% |
| !!! | TTTGTAATTGTTGTTTCTAA+AGG | - | chr3_1:86295419-86295438 | Msa0383400:intron | 20.0% |
| !! | GAAAAATTGATTAAACTCAT+GGG | + | chr3_1:86295621-86295640 | None:intergenic | 20.0% |
| !! | TGAAAAATTGATTAAACTCA+TGG | + | chr3_1:86295622-86295641 | None:intergenic | 20.0% |
| !! | AATTAGAAACTAATCTAAAC+CGG | - | chr3_1:86295733-86295752 | Msa0383400:intron | 20.0% |
| !!! | TAGTATGATGTTTTAGATTA+TGG | - | chr3_1:86295939-86295958 | Msa0383400:intron | 20.0% |
| !! | TTATGAATACAATCTCTATT+TGG | - | chr3_1:86296611-86296630 | Msa0383400:intron | 20.0% |
| !! | ATGAAAAGAAGAAAAGTAAA+AGG | - | chr3_1:86296888-86296907 | Msa0383400:intron | 20.0% |
| !! | TGAAAAGAAGAAAAGTAAAA+GGG | - | chr3_1:86296889-86296908 | Msa0383400:intron | 20.0% |
| !! | TGTAAGAATTATAGTAACTT+CGG | + | chr3_1:86296923-86296942 | None:intergenic | 20.0% |
| !! | GATGTTAGAAAATATTTATC+AGG | + | chr3_1:86296953-86296972 | None:intergenic | 20.0% |
| !!! | GTTTTTTAAATGCTTTTGAA+AGG | - | chr3_1:86297072-86297091 | Msa0383400:intron | 20.0% |
| !!! | TTGTACTATCTTTATTTAAC+TGG | + | chr3_1:86297128-86297147 | None:intergenic | 20.0% |
| !! | AATAAAGATAGTACAATACA+AGG | - | chr3_1:86297132-86297151 | Msa0383400:intron | 20.0% |
| !! | ATAAAGATAGTACAATACAA+GGG | - | chr3_1:86297133-86297152 | Msa0383400:intron | 20.0% |
| !!! | TTTTATAAACCTATGGTTTA+CGG | - | chr3_1:86297540-86297559 | Msa0383400:intron | 20.0% |
| !!! | TGTTTTTTTTTAATAGGATC+TGG | - | chr3_1:86297567-86297586 | Msa0383400:intron | 20.0% |
| !!! | GTTTTTTTTTAATAGGATCT+GGG | - | chr3_1:86297568-86297587 | Msa0383400:intron | 20.0% |
| !! | AAAAAATACTATGACTGTTT+GGG | + | chr3_1:86298200-86298219 | None:intergenic | 20.0% |
| !! | AAAAAAATACTATGACTGTT+TGG | + | chr3_1:86298201-86298220 | None:intergenic | 20.0% |
| !!! | TTTTTTTATGATGTGTTTTG+GGG | - | chr3_1:86298214-86298233 | Msa0383400:intron | 20.0% |
| !! | AATGAACATATGAAGAAATT+GGG | - | chr3_1:86298664-86298683 | Msa0383400:intron | 20.0% |
| !!! | GTGTAATTGATTATATCTTT+TGG | - | chr3_1:86298756-86298775 | Msa0383400:CDS | 20.0% |
| !! | AATCAATTTTACCAGAAACA+TGG | - | chr3_1:86295083-86295102 | Msa0383400:three_prime_UTR | 25.0% |
| ! | CGAATCGAAAATTCAAAAAA+GGG | + | chr3_1:86295257-86295276 | None:intergenic | 25.0% |
| ! | TCGAATCGAAAATTCAAAAA+AGG | + | chr3_1:86295258-86295277 | None:intergenic | 25.0% |
| ! | TTCTTTCTCTATCTCTAATT+AGG | - | chr3_1:86295377-86295396 | Msa0383400:intron | 25.0% |
| ! | TCTTTCTCTATCTCTAATTA+GGG | - | chr3_1:86295378-86295397 | Msa0383400:intron | 25.0% |
| ! | CAATTACAAACCCTAAAAAA+AGG | + | chr3_1:86295409-86295428 | None:intergenic | 25.0% |
| !!! | TGAATTTGCAATTCGTTTTT+TGG | - | chr3_1:86295503-86295522 | Msa0383400:CDS | 25.0% |
| ! | TATAAAAACTGTAGCTATCA+TGG | + | chr3_1:86295538-86295557 | None:intergenic | 25.0% |
| ! | TAAATGCAAAATAAGATTCC+AGG | + | chr3_1:86295561-86295580 | None:intergenic | 25.0% |
| ! | AAAAACCCTCATAAACATAT+AGG | - | chr3_1:86295656-86295675 | Msa0383400:intron | 25.0% |
| ! | AAAACCCTCATAAACATATA+GGG | - | chr3_1:86295657-86295676 | Msa0383400:intron | 25.0% |
| ! | ATTAGAAACTAATCTAAACC+GGG | - | chr3_1:86295734-86295753 | Msa0383400:intron | 25.0% |
| !!! | AAAGATGAGATTTTTGTTTG+TGG | - | chr3_1:86295783-86295802 | Msa0383400:intron | 25.0% |
| !!! | ATCAAACTATTTCTTTTTGC+AGG | - | chr3_1:86295811-86295830 | Msa0383400:intron | 25.0% |
| !! | CTTTTTCTTGTTAATTAGAG+TGG | - | chr3_1:86296110-86296129 | Msa0383400:intron | 25.0% |
| ! | TGATGTAAATCTATTCTCAT+TGG | - | chr3_1:86296450-86296469 | Msa0383400:intron | 25.0% |
| ! | TTCATTTCAAGATTTGACAT+CGG | - | chr3_1:86296694-86296713 | Msa0383400:intron | 25.0% |
| ! | TTGAAATCTGTAAACAATCT+AGG | + | chr3_1:86296785-86296804 | None:intergenic | 25.0% |
| ! | AAACTTGTAGAAACAAAAGA+TGG | - | chr3_1:86296805-86296824 | Msa0383400:intron | 25.0% |
| ! | TAGTTATATTGACGTTGAAA+AGG | - | chr3_1:86297027-86297046 | Msa0383400:intron | 25.0% |
| ! | TAAAGATAGTACAATACAAG+GGG | - | chr3_1:86297134-86297153 | Msa0383400:intron | 25.0% |
| ! | TATGCTTTCTCTATAACTAA+AGG | - | chr3_1:86297193-86297212 | Msa0383400:intron | 25.0% |
| ! | TTTGCATAGATCAATAATCT+AGG | + | chr3_1:86297402-86297421 | None:intergenic | 25.0% |
| ! | ATCCAAAGAATACAGTTAAA+GGG | + | chr3_1:86297509-86297528 | None:intergenic | 25.0% |
| ! | AATCCAAAGAATACAGTTAA+AGG | + | chr3_1:86297510-86297529 | None:intergenic | 25.0% |
| !! | TGCTTTCTTTTATAAACCTA+TGG | - | chr3_1:86297533-86297552 | Msa0383400:intron | 25.0% |
| ! | TTTATAAACCTATGGTTTAC+GGG | - | chr3_1:86297541-86297560 | Msa0383400:intron | 25.0% |
| !!! | GGGAGTTGTTTTTTTTTAAT+AGG | - | chr3_1:86297561-86297580 | Msa0383400:intron | 25.0% |
| ! | AAAAAATCCATACAAGTAAC+TGG | + | chr3_1:86297595-86297614 | None:intergenic | 25.0% |
| ! | GTAACATTTATCTTTAGACA+CGG | - | chr3_1:86298244-86298263 | Msa0383400:intron | 25.0% |
| ! | TGAACATAAAAATACACCAT+CGG | + | chr3_1:86298353-86298372 | None:intergenic | 25.0% |
| ! | CAATTTCTTCATATGTTCAT+TGG | + | chr3_1:86298665-86298684 | None:intergenic | 25.0% |
| ! | CAATGAACATATGAAGAAAT+TGG | - | chr3_1:86298663-86298682 | Msa0383400:intron | 25.0% |
| !! | AGAAATTAAGAGGTACTACT+TGG | + | chr3_1:86295005-86295024 | None:intergenic | 30.0% |
| GTTAAACTGAATCGAATTGA+GGG | + | chr3_1:86295031-86295050 | None:intergenic | 30.0% | |
| CGAAAATTCAAAAAAGGGAA+AGG | + | chr3_1:86295252-86295271 | None:intergenic | 30.0% | |
| !!! | TTAGGGTTTAGCCTTTTTTT+AGG | - | chr3_1:86295395-86295414 | Msa0383400:intron | 30.0% |
| !!! | TAGGGTTTAGCCTTTTTTTA+GGG | - | chr3_1:86295396-86295415 | Msa0383400:intron | 30.0% |
| ! | ATGATTGAGATTTGAGCTTT+TGG | - | chr3_1:86295466-86295485 | Msa0383400:CDS | 30.0% |
| ! | ATAGCTACAGTTTTTATACC+TGG | - | chr3_1:86295540-86295559 | Msa0383400:intron | 30.0% |
| TCATGGGAGAATAATGTTAT+TGG | + | chr3_1:86295605-86295624 | None:intergenic | 30.0% | |
| AAGTCCCTATATGTTTATGA+GGG | + | chr3_1:86295664-86295683 | None:intergenic | 30.0% | |
| AAAGTCCCTATATGTTTATG+AGG | + | chr3_1:86295665-86295684 | None:intergenic | 30.0% | |
| ! | ATTTTATGCAGAATTCAGCT+TGG | - | chr3_1:86296012-86296031 | Msa0383400:intron | 30.0% |
| !!! | ACTAGCATTTTGGAATTTAG+TGG | + | chr3_1:86296149-86296168 | None:intergenic | 30.0% |
| !! | TTACAAAAGAAGTATCCATC+AGG | + | chr3_1:86296386-86296405 | None:intergenic | 30.0% |
| TGTATGTCCACTTAAGTATT+TGG | - | chr3_1:86296424-86296443 | Msa0383400:intron | 30.0% | |
| TTACAAACTGGGTTAATTGT+TGG | - | chr3_1:86296482-86296501 | Msa0383400:intron | 30.0% | |
| GATGTCAAATCTTGAAATGA+AGG | + | chr3_1:86296695-86296714 | None:intergenic | 30.0% | |
| TCATTTCAAGATTTGACATC+GGG | - | chr3_1:86296695-86296714 | Msa0383400:intron | 30.0% | |
| CAATAACTCTAGCATCAAAA+AGG | + | chr3_1:86296984-86297003 | None:intergenic | 30.0% | |
| ! | CTTTTTGATGCTAGAGTTAT+TGG | - | chr3_1:86296982-86297001 | Msa0383400:intron | 30.0% |
| TCTATAACTAAAGGTTTCCA+TGG | - | chr3_1:86297202-86297221 | Msa0383400:intron | 30.0% | |
| ! | ATTTTCCTACAAAGTTGAGT+AGG | + | chr3_1:86297258-86297277 | None:intergenic | 30.0% |
| !!! | AGGAAAATGTTTTAGTTGTG+AGG | - | chr3_1:86297270-86297289 | Msa0383400:intron | 30.0% |
| !! | GGTTGAATGTGAATTTGTTA+AGG | - | chr3_1:86297324-86297343 | Msa0383400:CDS | 30.0% |
| TACCCTTTAACTGTATTCTT+TGG | - | chr3_1:86297504-86297523 | Msa0383400:intron | 30.0% | |
| AGATGAAATAAGACATGAGT+AGG | - | chr3_1:86297736-86297755 | Msa0383400:intron | 30.0% | |
| GATGAAATAAGACATGAGTA+GGG | - | chr3_1:86297737-86297756 | Msa0383400:intron | 30.0% | |
| ATGAAATAAGACATGAGTAG+GGG | - | chr3_1:86297738-86297757 | Msa0383400:intron | 30.0% | |
| !!! | TGTGTTTGTGAGTTGATTTT+TGG | - | chr3_1:86297801-86297820 | Msa0383400:intron | 30.0% |
| !!! | TTTGTGAGTTGATTTTTGGA+GGG | - | chr3_1:86297805-86297824 | Msa0383400:intron | 30.0% |
| !! | TGTTTTTGCAAGTAAGGTTT+TGG | + | chr3_1:86297981-86298000 | None:intergenic | 30.0% |
| ! | ATATTTGTGGTTGAGTTGTT+AGG | + | chr3_1:86298172-86298191 | None:intergenic | 30.0% |
| ! | TGTTTGGGCTTTTATATTTG+TGG | + | chr3_1:86298185-86298204 | None:intergenic | 30.0% |
| ! | AAATTCTGAGAATGACTCTT+TGG | - | chr3_1:86298300-86298319 | Msa0383400:intron | 30.0% |
| ! | AATTCTGAGAATGACTCTTT+GGG | - | chr3_1:86298301-86298320 | Msa0383400:intron | 30.0% |
| GATTTCTATCTCAATCCTTA+CGG | - | chr3_1:86298327-86298346 | Msa0383400:intron | 30.0% | |
| !! | GGTGTATTTTTATGTTCAAC+AGG | - | chr3_1:86298355-86298374 | Msa0383400:intron | 30.0% |
| CGATAAATAGTTCAGAGAAA+AGG | + | chr3_1:86298731-86298750 | None:intergenic | 30.0% | |
| !! | ATCTTTTGGTTAGATGTTGT+TGG | - | chr3_1:86298770-86298789 | Msa0383400:CDS | 30.0% |
| TACAACTGCAAACTACAAAA+GGG | - | chr3_1:86298842-86298861 | Msa0383400:five_prime_UTR | 30.0% | |
| ! | TTGAGGGTGTAGAAATTAAG+AGG | + | chr3_1:86295015-86295034 | None:intergenic | 35.0% |
| GGTTAAACTGAATCGAATTG+AGG | + | chr3_1:86295032-86295051 | None:intergenic | 35.0% | |
| ! | TTTTACCAGAAACATGGACA+AGG | - | chr3_1:86295089-86295108 | Msa0383400:three_prime_UTR | 35.0% |
| AAGAAGTTAATTACCAGTGC+TGG | + | chr3_1:86295202-86295221 | None:intergenic | 35.0% | |
| !!! | AGGGACTTTTTCACAAATGA+AGG | - | chr3_1:86295676-86295695 | Msa0383400:intron | 35.0% |
| AAACTAATCTAAACCGGGAT+TGG | - | chr3_1:86295739-86295758 | Msa0383400:intron | 35.0% | |
| AACAACAAGGTATGACTTTG+AGG | - | chr3_1:86296087-86296106 | Msa0383400:intron | 35.0% | |
| TTCCAAAATGCTAGTTGCTA+TGG | - | chr3_1:86296154-86296173 | Msa0383400:intron | 35.0% | |
| CAGATTGCAAGAGAATTACT+CGG | - | chr3_1:86296242-86296261 | Msa0383400:intron | 35.0% | |
| ATCAGAGCCAAATACTTAAG+TGG | + | chr3_1:86296434-86296453 | None:intergenic | 35.0% | |
| TGGCAGAATAACTTACAAAC+TGG | - | chr3_1:86296470-86296489 | Msa0383400:intron | 35.0% | |
| GGCAGAATAACTTACAAACT+GGG | - | chr3_1:86296471-86296490 | Msa0383400:intron | 35.0% | |
| !! | GTACAACAACCTTTTGCTAT+TGG | - | chr3_1:86296563-86296582 | Msa0383400:intron | 35.0% |
| CAAATACCTCCAATAGCAAA+AGG | + | chr3_1:86296575-86296594 | None:intergenic | 35.0% | |
| ! | ATTGCTTGTTTCACTTGCTA+AGG | - | chr3_1:86296664-86296683 | Msa0383400:intron | 35.0% |
| TTCCTAAGAATCAACGATGA+TGG | - | chr3_1:86296734-86296753 | Msa0383400:intron | 35.0% | |
| !! | TACCATCATCGTTGATTCTT+AGG | + | chr3_1:86296739-86296758 | None:intergenic | 35.0% |
| ! | TAAGAATCAACGATGATGGT+AGG | - | chr3_1:86296738-86296757 | Msa0383400:intron | 35.0% |
| TCTAGGTCAACTTTAGCAAA+AGG | + | chr3_1:86296768-86296787 | None:intergenic | 35.0% | |
| AAATCCAAGCAATTGCTGAT+AGG | - | chr3_1:86296839-86296858 | Msa0383400:intron | 35.0% | |
| ! | ACGTTGAAAAGGCATATGAT+TGG | - | chr3_1:86297038-86297057 | Msa0383400:intron | 35.0% |
| ! | CATATGATTGGTTCACATAG+TGG | - | chr3_1:86297050-86297069 | Msa0383400:intron | 35.0% |
| ACTATACTCTCATGCTAGTA+GGG | + | chr3_1:86297162-86297181 | None:intergenic | 35.0% | |
| TACTATACTCTCATGCTAGT+AGG | + | chr3_1:86297163-86297182 | None:intergenic | 35.0% | |
| ! | ACTAGCATGAGAGTATAGTA+TGG | - | chr3_1:86297163-86297182 | Msa0383400:intron | 35.0% |
| ! | CTAGCATGAGAGTATAGTAT+GGG | - | chr3_1:86297164-86297183 | Msa0383400:intron | 35.0% |
| ! | TAGCATGAGAGTATAGTATG+GGG | - | chr3_1:86297165-86297184 | Msa0383400:intron | 35.0% |
| TAACTAAAGGTTTCCATGGA+AGG | - | chr3_1:86297206-86297225 | Msa0383400:intron | 35.0% | |
| GCTACATGGATAAATGGAAA+AGG | + | chr3_1:86297236-86297255 | None:intergenic | 35.0% | |
| TAGTTGTGAGGCTTGTATAA+TGG | - | chr3_1:86297282-86297301 | Msa0383400:intron | 35.0% | |
| ! | TGACTTGCATGTCAATTTAC+TGG | - | chr3_1:86297353-86297372 | Msa0383400:CDS | 35.0% |
| TTGCAAAATGAGTTGTCTGT+TGG | - | chr3_1:86297673-86297692 | Msa0383400:intron | 35.0% | |
| !!! | GTTTGTGAGTTGATTTTTGG+AGG | - | chr3_1:86297804-86297823 | Msa0383400:intron | 35.0% |
| !!! | TTTGCAAGTAAGGTTTTGGA+GGG | + | chr3_1:86297977-86297996 | None:intergenic | 35.0% |
| !! | TTTTGCAAGTAAGGTTTTGG+AGG | + | chr3_1:86297978-86297997 | None:intergenic | 35.0% |
| ! | ATTCTGAGAATGACTCTTTG+GGG | - | chr3_1:86298302-86298321 | Msa0383400:intron | 35.0% |
| TCAACAGGATCTAGTCAAAA+AGG | - | chr3_1:86298370-86298389 | Msa0383400:intron | 35.0% | |
| GATGTCTTACAATGACTGTT+CGG | + | chr3_1:86298442-86298461 | None:intergenic | 35.0% | |
| ! | ATATTGGAAGTTGATCACCT+GGG | + | chr3_1:86298586-86298605 | None:intergenic | 35.0% |
| !! | TTCATATGTTCATTGGCTCT+GGG | + | chr3_1:86298658-86298677 | None:intergenic | 35.0% |
| GTACAACTGCAAACTACAAA+AGG | - | chr3_1:86298841-86298860 | Msa0383400:five_prime_UTR | 35.0% | |
| AAGAGAAGAAGAAAAGAGGC+TGG | + | chr3_1:86295053-86295072 | None:intergenic | 40.0% | |
| GCGAAAGAGAAGAAGAAAAG+AGG | + | chr3_1:86295057-86295076 | None:intergenic | 40.0% | |
| !! | ATCATCGGTGTTACCTACAA+CGG | - | chr3_1:86295147-86295166 | Msa0383400:three_prime_UTR | 40.0% |
| ATTCGATCTCTCTCACTTTC+AGG | - | chr3_1:86295272-86295291 | Msa0383400:CDS | 40.0% | |
| ! | GATTTTGTCAGATGCACGAT+TGG | + | chr3_1:86295309-86295328 | None:intergenic | 40.0% |
| AATTAGCCACTTACGTGTGT+TGG | + | chr3_1:86295883-86295902 | None:intergenic | 40.0% | |
| GCTTCTCGCATATAACAACA+AGG | - | chr3_1:86296074-86296093 | Msa0383400:intron | 40.0% | |
| ! | CACCATAGCAACTAGCATTT+TGG | + | chr3_1:86296159-86296178 | None:intergenic | 40.0% |
| CAAAATGCTAGTTGCTATGG+TGG | - | chr3_1:86296157-86296176 | Msa0383400:intron | 40.0% | |
| ! | TCGTCATTGCAATTGAGTTG+AGG | - | chr3_1:86296337-86296356 | Msa0383400:intron | 40.0% |
| !! | CAATTGAGTTGAGGATTAGC+AGG | - | chr3_1:86296346-86296365 | Msa0383400:intron | 40.0% |
| GTGACATTATGTCATCCTGA+TGG | - | chr3_1:86296368-86296387 | Msa0383400:intron | 40.0% | |
| CAAACTGGGTTAATTGTTGG+TGG | - | chr3_1:86296485-86296504 | Msa0383400:intron | 40.0% | |
| !! | TGGGTTAATTGTTGGTGGTT+GGG | - | chr3_1:86296490-86296509 | Msa0383400:intron | 40.0% |
| TATGAAGGCGGTCAGATTTA+TGG | - | chr3_1:86296518-86296537 | Msa0383400:intron | 40.0% | |
| CAGATTTATGGAGTTCCTCT+AGG | - | chr3_1:86296530-86296549 | Msa0383400:intron | 40.0% | |
| ATTTATGGAGTTCCTCTAGG+TGG | - | chr3_1:86296533-86296552 | Msa0383400:intron | 40.0% | |
| TGTACAATTGTTCCACCTAG+AGG | + | chr3_1:86296548-86296567 | None:intergenic | 40.0% | |
| !!! | CAACAACCTTTTGCTATTGG+AGG | - | chr3_1:86296566-86296585 | Msa0383400:intron | 40.0% |
| CTCTCTCTTTCGGTCTAATA+TGG | - | chr3_1:86296865-86296884 | Msa0383400:intron | 40.0% | |
| TGATGCTAGAGTTATTGGAG+TGG | - | chr3_1:86296987-86297006 | Msa0383400:intron | 40.0% | |
| GAGTAGGCTACATGGATAAA+TGG | + | chr3_1:86297242-86297261 | None:intergenic | 40.0% | |
| ACAAAGTTGAGTAGGCTACA+TGG | + | chr3_1:86297250-86297269 | None:intergenic | 40.0% | |
| TGTAGCCTACTCAACTTTGT+AGG | - | chr3_1:86297250-86297269 | Msa0383400:intron | 40.0% | |
| GGTTGCTTCTTTCATTGTGA+AGG | - | chr3_1:86297303-86297322 | Msa0383400:intron | 40.0% | |
| ! | ATGTCAATTTACTGGTCTCG+TGG | - | chr3_1:86297361-86297380 | Msa0383400:CDS | 40.0% |
| AAACAACTCCCGTAAACCAT+AGG | + | chr3_1:86297552-86297571 | None:intergenic | 40.0% | |
| !!! | ATGGATTTTTTGACCAAGCC+TGG | - | chr3_1:86297604-86297623 | Msa0383400:intron | 40.0% |
| ! | TGTCTGTTGGCAACTTTTAG+TGG | - | chr3_1:86297686-86297705 | Msa0383400:intron | 40.0% |
| ! | GTCTGTTGGCAACTTTTAGT+GGG | - | chr3_1:86297687-86297706 | Msa0383400:intron | 40.0% |
| TTAGTGGGAGTTAGTTGTGT+TGG | - | chr3_1:86297702-86297721 | Msa0383400:intron | 40.0% | |
| !! | TGATTTTTGGAGGGCTTTGT+AGG | - | chr3_1:86297814-86297833 | Msa0383400:CDS | 40.0% |
| !! | GATTTTTGGAGGGCTTTGTA+GGG | - | chr3_1:86297815-86297834 | Msa0383400:CDS | 40.0% |
| !!! | GAAGGGTGTTTTTGCAAGTA+AGG | + | chr3_1:86297987-86298006 | None:intergenic | 40.0% |
| TACTTGCAAAAACACCCTTC+AGG | - | chr3_1:86297987-86298006 | Msa0383400:intron | 40.0% | |
| ACTTGCAAAAACACCCTTCA+GGG | - | chr3_1:86297988-86298007 | Msa0383400:intron | 40.0% | |
| ! | ACTCAGAAGCTTGAGTTGTT+AGG | - | chr3_1:86298058-86298077 | Msa0383400:intron | 40.0% |
| ! | AAGCTTGAGTTGTTAGGTGT+AGG | - | chr3_1:86298064-86298083 | Msa0383400:intron | 40.0% |
| ! | AGCTTGAGTTGTTAGGTGTA+GGG | - | chr3_1:86298065-86298084 | Msa0383400:intron | 40.0% |
| GAGTTGTTAGGCAAAGAGTA+AGG | + | chr3_1:86298160-86298179 | None:intergenic | 40.0% | |
| TATCTTTAGACACGGACAGT+AGG | - | chr3_1:86298252-86298271 | Msa0383400:intron | 40.0% | |
| ! | TTCTGAGAATGACTCTTTGG+GGG | - | chr3_1:86298303-86298322 | Msa0383400:intron | 40.0% |
| TCCCTTGCAGATAAATTCAG+AGG | - | chr3_1:86298541-86298560 | Msa0383400:CDS | 40.0% | |
| CCCTCTGAATTTATCTGCAA+GGG | + | chr3_1:86298545-86298564 | None:intergenic | 40.0% | |
| CCCTTGCAGATAAATTCAGA+GGG | - | chr3_1:86298542-86298561 | Msa0383400:CDS | 40.0% | |
| TCCCTCTGAATTTATCTGCA+AGG | + | chr3_1:86298546-86298565 | None:intergenic | 40.0% | |
| ATCACCTGGGTAGAAATTTC+TGG | + | chr3_1:86298573-86298592 | None:intergenic | 40.0% | |
| ! | CATATTGGAAGTTGATCACC+TGG | + | chr3_1:86298587-86298606 | None:intergenic | 40.0% |
| CAGGTGATCAACTTCCAATA+TGG | - | chr3_1:86298585-86298604 | Msa0383400:CDS | 40.0% | |
| TCCAATATGGCATGATGAAC+TGG | - | chr3_1:86298598-86298617 | Msa0383400:intron | 40.0% | |
| TCCAGTTCATCATGCCATAT+TGG | + | chr3_1:86298602-86298621 | None:intergenic | 40.0% | |
| AATATGGCATGATGAACTGG+AGG | - | chr3_1:86298601-86298620 | Msa0383400:intron | 40.0% | |
| AACTCATTGCTGGACATTCT+TGG | - | chr3_1:86298629-86298648 | Msa0383400:intron | 40.0% | |
| !! | TCATATGTTCATTGGCTCTG+GGG | + | chr3_1:86298657-86298676 | None:intergenic | 40.0% |
| !! | CTTCATATGTTCATTGGCTC+TGG | + | chr3_1:86298659-86298678 | None:intergenic | 40.0% |
| TCAGAGAAAAGGTCAACAGA+GGG | + | chr3_1:86298720-86298739 | None:intergenic | 40.0% | |
| TTCAGAGAAAAGGTCAACAG+AGG | + | chr3_1:86298721-86298740 | None:intergenic | 40.0% | |
| CTCCTCATGTTGTGTACTAT+GGG | - | chr3_1:86298805-86298824 | Msa0383400:five_prime_UTR | 40.0% | |
| TACCCATAGTACACAACATG+AGG | + | chr3_1:86298810-86298829 | None:intergenic | 40.0% | |
| ATCGACCTTGTCCATGTTTC+TGG | + | chr3_1:86295097-86295116 | None:intergenic | 45.0% | |
| TTTCAATGCTCCCCATTCCA+TGG | - | chr3_1:86295116-86295135 | Msa0383400:three_prime_UTR | 45.0% | |
| TTCAATGCTCCCCATTCCAT+GGG | - | chr3_1:86295117-86295136 | Msa0383400:three_prime_UTR | 45.0% | |
| GTTGTAGGTAACACCGATGA+TGG | + | chr3_1:86295148-86295167 | None:intergenic | 45.0% | |
| CTAATCTAAACCGGGATTGG+AGG | - | chr3_1:86295742-86295761 | Msa0383400:intron | 45.0% | |
| TTCATTGATGCCTCCAATCC+CGG | + | chr3_1:86295755-86295774 | None:intergenic | 45.0% | |
| AGGTTGCTGCAAACCTTGTT+CGG | - | chr3_1:86296052-86296071 | Msa0383400:intron | 45.0% | |
| TATATGCGAGAAGCCGAACA+AGG | + | chr3_1:86296068-86296087 | None:intergenic | 45.0% | |
| !! | CTGGGTTAATTGTTGGTGGT+TGG | - | chr3_1:86296489-86296508 | Msa0383400:intron | 45.0% |
| TGATAGGCTGCTCTCTCTTT+CGG | - | chr3_1:86296855-86296874 | Msa0383400:intron | 45.0% | |
| TGGAAAAGGATGACCTTCCA+TGG | + | chr3_1:86297222-86297241 | None:intergenic | 45.0% | |
| ! | TACTGGTCTCGTGGTCAAAT+TGG | - | chr3_1:86297370-86297389 | Msa0383400:CDS | 45.0% |
| TCTGGGTCCAGTTACTTGTA+TGG | - | chr3_1:86297585-86297604 | Msa0383400:intron | 45.0% | |
| TTTGACCAAGCCTGGAAAGA+CGG | - | chr3_1:86297612-86297631 | Msa0383400:intron | 45.0% | |
| TATGACCAAGGATGAAGCTG+AGG | - | chr3_1:86297635-86297654 | Msa0383400:intron | 45.0% | |
| CAAGGATGAAGCTGAGGTAT+GGG | - | chr3_1:86297641-86297660 | Msa0383400:intron | 45.0% | |
| AAAATACACCATCGGCCGTA+AGG | + | chr3_1:86298345-86298364 | None:intergenic | 45.0% | |
| GTGACCAGAAATTTCTACCC+AGG | - | chr3_1:86298566-86298585 | Msa0383400:CDS | 45.0% | |
| CCATAGTACACAACATGAGG+AGG | + | chr3_1:86298807-86298826 | None:intergenic | 45.0% | |
| CCTCCTCATGTTGTGTACTA+TGG | - | chr3_1:86298804-86298823 | Msa0383400:exon | 45.0% | |
| !!! | TTAATATATATTAGATATTT+TGG | + | chr3_1:86297941-86297960 | None:intergenic | 5.0% |
| ATGGTGGTTCCCATGGAATG+GGG | + | chr3_1:86295129-86295148 | None:intergenic | 50.0% | |
| ! | GATGGTGGTTCCCATGGAAT+GGG | + | chr3_1:86295130-86295149 | None:intergenic | 50.0% |
| !! | TGATGGTGGTTCCCATGGAA+TGG | + | chr3_1:86295131-86295150 | None:intergenic | 50.0% |
| TCCATGGGAACCACCATCAT+CGG | - | chr3_1:86295132-86295151 | Msa0383400:three_prime_UTR | 50.0% | |
| ! | GTAGGTAACACCGATGATGG+TGG | + | chr3_1:86295145-86295164 | None:intergenic | 50.0% |
| !! | ATCGGTGTTACCTACAACGG+CGG | - | chr3_1:86295150-86295169 | Msa0383400:three_prime_UTR | 50.0% |
| AATGTCTACGTCTGTCGCTC+TGG | - | chr3_1:86295344-86295363 | Msa0383400:intron | 50.0% | |
| TTTGCAGGCTGCAGATTCTC+AGG | - | chr3_1:86295826-86295845 | Msa0383400:intron | 50.0% | |
| ! | CCACTTACGTGTGTTGGTGA+AGG | + | chr3_1:86295877-86295896 | None:intergenic | 50.0% |
| CCTTCACCAACACACGTAAG+TGG | - | chr3_1:86295874-86295893 | Msa0383400:intron | 50.0% | |
| TGGACAACCTGCAACAGTCA+AGG | - | chr3_1:86296032-86296051 | Msa0383400:intron | 50.0% | |
| GGTGGTTGGGACAAGTATGA+AGG | - | chr3_1:86296503-86296522 | Msa0383400:intron | 50.0% | |
| GGTTGGGACAAGTATGAAGG+CGG | - | chr3_1:86296506-86296525 | Msa0383400:intron | 50.0% | |
| GCAGCCTATCAGCAATTGCT+TGG | + | chr3_1:86296846-86296865 | None:intergenic | 50.0% | |
| TCATACCGTCTTTCCAGGCT+TGG | + | chr3_1:86297620-86297639 | None:intergenic | 50.0% | |
| CTTGGTCATACCGTCTTTCC+AGG | + | chr3_1:86297625-86297644 | None:intergenic | 50.0% | |
| CTGGAAAGACGGTATGACCA+AGG | - | chr3_1:86297623-86297642 | Msa0383400:intron | 50.0% | |
| CCATACCTCAGCTTCATCCT+TGG | + | chr3_1:86297643-86297662 | None:intergenic | 50.0% | |
| CCAAGGATGAAGCTGAGGTA+TGG | - | chr3_1:86297640-86297659 | Msa0383400:intron | 50.0% | |
| AAACACCCTTCAGGGAGAGT+AGG | - | chr3_1:86297996-86298015 | Msa0383400:intron | 50.0% | |
| TGCAACCTACTCTCCCTGAA+GGG | + | chr3_1:86298004-86298023 | None:intergenic | 50.0% | |
| ATCTCAATCCTTACGGCCGA+TGG | - | chr3_1:86298334-86298353 | Msa0383400:intron | 50.0% | |
| TCACTTGCCATTGCTCGTGA+TGG | - | chr3_1:86298398-86298417 | Msa0383400:intron | 50.0% | |
| ACTAGCACCATCACGAGCAA+TGG | + | chr3_1:86298408-86298427 | None:intergenic | 50.0% | |
| ! | ATTGCTCGTGATGGTGCTAG+TGG | - | chr3_1:86298407-86298426 | Msa0383400:intron | 50.0% |
| !! | ACCGATGATGGTGGTTCCCA+TGG | + | chr3_1:86295136-86295155 | None:intergenic | 55.0% |
| AAGAACAACGCCGCCGTTGT+AGG | + | chr3_1:86295163-86295182 | None:intergenic | 55.0% | |
| TACAACGGCGGCGTTGTTCT+TGG | - | chr3_1:86295162-86295181 | Msa0383400:three_prime_UTR | 55.0% | |
| !! | ACCAGTGCTGGTTCGAGAGT+CGG | + | chr3_1:86295190-86295209 | None:intergenic | 55.0% |
| ! | CTACGTCTGTCGCTCTGGAT+CGG | - | chr3_1:86295349-86295368 | Msa0383400:intron | 55.0% |
| GCAGCAACCTTGACTGTTGC+AGG | + | chr3_1:86296042-86296061 | None:intergenic | 55.0% | |
| CTGCAACCTACTCTCCCTGA+AGG | + | chr3_1:86298005-86298024 | None:intergenic | 55.0% | |
| GGAGGCTCACAACTCATTGC+TGG | - | chr3_1:86298619-86298638 | Msa0383400:intron | 55.0% | |
| ! | GCTCGTGATGGTGCTAGTGG+CGG | - | chr3_1:86298410-86298429 | Msa0383400:intron | 60.0% |
| ! | GCCGACTCTCGAACCAGCAC+TGG | - | chr3_1:86295186-86295205 | Msa0383400:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 86294986 | 86298920 | 86294986 | ID=Msa0383400;Name=Msa0383400 |
| chr3_1 | mRNA | 86294986 | 86298920 | 86294986 | ID=Msa0383400-mRNA-1;Parent=Msa0383400;Name=Msa0383400-mRNA-1;_AED=0.06;_eAED=0.06;_QI=116|1|1|1|1|1|8|244|232 |
| chr3_1 | exon | 86294986 | 86295355 | 86294986 | ID=Msa0383400-mRNA-1:exon:22818;Parent=Msa0383400-mRNA-1 |
| chr3_1 | exon | 86295455 | 86295529 | 86295455 | ID=Msa0383400-mRNA-1:exon:22817;Parent=Msa0383400-mRNA-1 |
| chr3_1 | exon | 86296250 | 86296323 | 86296250 | ID=Msa0383400-mRNA-1:exon:22816;Parent=Msa0383400-mRNA-1 |
| chr3_1 | exon | 86297319 | 86297430 | 86297319 | ID=Msa0383400-mRNA-1:exon:22815;Parent=Msa0383400-mRNA-1 |
| chr3_1 | exon | 86297811 | 86297883 | 86297811 | ID=Msa0383400-mRNA-1:exon:22814;Parent=Msa0383400-mRNA-1 |
| chr3_1 | exon | 86298018 | 86298073 | 86298018 | ID=Msa0383400-mRNA-1:exon:22813;Parent=Msa0383400-mRNA-1 |
| chr3_1 | exon | 86298536 | 86298612 | 86298536 | ID=Msa0383400-mRNA-1:exon:22812;Parent=Msa0383400-mRNA-1 |
| chr3_1 | exon | 86298699 | 86298920 | 86298699 | ID=Msa0383400-mRNA-1:exon:22811;Parent=Msa0383400-mRNA-1 |
| chr3_1 | five_prime_UTR | 86298805 | 86298920 | 86298805 | ID=Msa0383400-mRNA-1:five_prime_utr;Parent=Msa0383400-mRNA-1 |
| chr3_1 | CDS | 86298699 | 86298804 | 86298699 | ID=Msa0383400-mRNA-1:cds;Parent=Msa0383400-mRNA-1 |
| chr3_1 | CDS | 86298536 | 86298612 | 86298536 | ID=Msa0383400-mRNA-1:cds;Parent=Msa0383400-mRNA-1 |
| chr3_1 | CDS | 86298018 | 86298073 | 86298018 | ID=Msa0383400-mRNA-1:cds;Parent=Msa0383400-mRNA-1 |
| chr3_1 | CDS | 86297811 | 86297883 | 86297811 | ID=Msa0383400-mRNA-1:cds;Parent=Msa0383400-mRNA-1 |
| chr3_1 | CDS | 86297319 | 86297430 | 86297319 | ID=Msa0383400-mRNA-1:cds;Parent=Msa0383400-mRNA-1 |
| chr3_1 | CDS | 86296250 | 86296323 | 86296250 | ID=Msa0383400-mRNA-1:cds;Parent=Msa0383400-mRNA-1 |
| chr3_1 | CDS | 86295455 | 86295529 | 86295455 | ID=Msa0383400-mRNA-1:cds;Parent=Msa0383400-mRNA-1 |
| chr3_1 | CDS | 86295230 | 86295355 | 86295230 | ID=Msa0383400-mRNA-1:cds;Parent=Msa0383400-mRNA-1 |
| chr3_1 | three_prime_UTR | 86294986 | 86295229 | 86294986 | ID=Msa0383400-mRNA-1:three_prime_utr;Parent=Msa0383400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
