Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0539730 | XP_013455281.3 | 94.614 | 557 | 30 | 0 | 1 | 557 | 1 | 557 | 0.0 | 1050 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0539730 | sp|Q0WP01|PTR9_ARATH | 63.538 | 554 | 190 | 2 | 10 | 556 | 9 | 557 | 0.0 | 686 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0539730 | A0A396I7E7 | 94.614 | 557 | 30 | 0 | 1 | 557 | 1 | 557 | 0.0 | 1050 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0013270 | Msa0539730 | 0.810430 | 1.157311e-50 | -8.615850e-47 |
Msa0024650 | Msa0539730 | 0.819113 | 1.377594e-52 | -8.615850e-47 |
Msa0025570 | Msa0539730 | 0.821677 | 3.555544e-53 | -8.615850e-47 |
Msa0048380 | Msa0539730 | 0.806023 | 1.005743e-49 | -8.615850e-47 |
Msa0070120 | Msa0539730 | 0.804684 | 1.919487e-49 | -8.615850e-47 |
Msa0073110 | Msa0539730 | 0.822181 | 2.717374e-53 | -8.615850e-47 |
Msa0098380 | Msa0539730 | 0.831364 | 1.740572e-55 | -8.615850e-47 |
Msa0120450 | Msa0539730 | 0.825271 | 5.134372e-54 | -8.615850e-47 |
Msa0121320 | Msa0539730 | 0.802693 | 4.969677e-49 | -8.615850e-47 |
Msa0163690 | Msa0539730 | 0.807566 | 4.748025e-50 | -8.615850e-47 |
Msa0164560 | Msa0539730 | 0.803574 | 3.266231e-49 | -8.615850e-47 |
Msa0185040 | Msa0539730 | 0.809529 | 1.808965e-50 | -8.615850e-47 |
Msa0191900 | Msa0539730 | 0.808323 | 3.277303e-50 | -8.615850e-47 |
Msa0378320 | Msa0539730 | 0.810468 | 1.135445e-50 | -8.615850e-47 |
Msa0386910 | Msa0539730 | 0.812707 | 3.701938e-51 | -8.615850e-47 |
Msa0390160 | Msa0539730 | 0.815446 | 9.208758e-52 | -8.615850e-47 |
Msa0390170 | Msa0539730 | 0.810175 | 1.313231e-50 | -8.615850e-47 |
Msa0405200 | Msa0539730 | 0.826942 | 2.056913e-54 | -8.615850e-47 |
Msa0405210 | Msa0539730 | 0.804513 | 2.083472e-49 | -8.615850e-47 |
Msa0449490 | Msa0539730 | 0.805665 | 1.195973e-49 | -8.615850e-47 |
Msa0460600 | Msa0539730 | 0.801549 | 8.544356e-49 | -8.615850e-47 |
Msa0257760 | Msa0539730 | 0.845567 | 3.747828e-59 | -8.615850e-47 |
Msa0269710 | Msa0539730 | 0.802289 | 6.022215e-49 | -8.615850e-47 |
Msa0310190 | Msa0539730 | 0.805268 | 1.448936e-49 | -8.615850e-47 |
Msa0312540 | Msa0539730 | 0.807234 | 5.583732e-50 | -8.615850e-47 |
Msa0324810 | Msa0539730 | 0.805917 | 1.058870e-49 | -8.615850e-47 |
Msa0345050 | Msa0539730 | 0.815981 | 6.994661e-52 | -8.615850e-47 |
Msa0354600 | Msa0539730 | 0.829145 | 6.064694e-55 | -8.615850e-47 |
Msa0490100 | Msa0539730 | 0.831846 | 1.324367e-55 | -8.615850e-47 |
Msa0497680 | Msa0539730 | 0.810685 | 1.019369e-50 | -8.615850e-47 |
Msa0531050 | Msa0539730 | 0.813006 | 3.184608e-51 | -8.615850e-47 |
Msa0539730 | Msa0556270 | 0.801395 | 9.189432e-49 | -8.615850e-47 |
Msa0539730 | Msa0567330 | 0.807447 | 5.031959e-50 | -8.615850e-47 |
Msa0539730 | Msa0576320 | 0.808426 | 3.115101e-50 | -8.615850e-47 |
Msa0539730 | Msa0597180 | 0.810123 | 1.347645e-50 | -8.615850e-47 |
Msa0539730 | Msa0606600 | 0.818197 | 2.222326e-52 | -8.615850e-47 |
Msa0539730 | Msa0647300 | 0.806465 | 8.119769e-50 | -8.615850e-47 |
Msa0539730 | Msa0680460 | 0.828831 | 7.225071e-55 | -8.615850e-47 |
Msa0539730 | Msa0686830 | 0.816527 | 5.282726e-52 | -8.615850e-47 |
Msa0539730 | Msa0719600 | 0.816790 | 4.612299e-52 | -8.615850e-47 |
Msa0539730 | Msa0751510 | 0.803353 | 3.630651e-49 | -8.615850e-47 |
Msa0539730 | Msa0789780 | 0.814586 | 1.428392e-51 | -8.615850e-47 |
Msa0539730 | Msa0802600 | 0.811828 | 5.758341e-51 | -8.615850e-47 |
Msa0539730 | Msa0814160 | 0.802276 | 6.059140e-49 | -8.615850e-47 |
Msa0539730 | Msa0829990 | 0.817945 | 2.534713e-52 | -8.615850e-47 |
Msa0539730 | Msa0841090 | 0.806299 | 8.798841e-50 | -8.615850e-47 |
Msa0539730 | Msa0841520 | 0.813841 | 2.086422e-51 | -8.615850e-47 |
Msa0539730 | Msa0873880 | 0.828076 | 1.098888e-54 | -8.615850e-47 |
Msa0539730 | Msa0921790 | 0.804031 | 2.625619e-49 | -8.615850e-47 |
Msa0539730 | Msa1001120 | 0.802228 | 6.197288e-49 | -8.615850e-47 |
Msa0539730 | Msa1029780 | 0.804586 | 2.011668e-49 | -8.615850e-47 |
Msa0539730 | Msa1029860 | 0.812134 | 4.940022e-51 | -8.615850e-47 |
Msa0539730 | Msa1030320 | 0.800119 | 1.673329e-48 | -8.615850e-47 |
Msa0539730 | Msa1031780 | 0.801930 | 7.136950e-49 | -8.615850e-47 |
Msa0539730 | Msa1035050 | 0.829589 | 4.730733e-55 | -8.615850e-47 |
Msa0539730 | Msa1068780 | 0.813272 | 2.783844e-51 | -8.615850e-47 |
Msa0539730 | Msa1075090 | 0.812613 | 3.882372e-51 | -8.615850e-47 |
Msa0539730 | Msa1077970 | 0.806583 | 7.666576e-50 | -8.615850e-47 |
Msa0539730 | Msa1115980 | 0.826904 | 2.100225e-54 | -8.615850e-47 |
Msa0539730 | Msa1120960 | 0.815558 | 8.692186e-52 | -8.615850e-47 |
Msa0539730 | Msa1131120 | 0.816066 | 6.695904e-52 | -8.615850e-47 |
Msa0539730 | Msa1136630 | 0.815257 | 1.014155e-51 | -8.615850e-47 |
Msa0539730 | Msa1137750 | 0.801423 | 9.068200e-49 | -8.615850e-47 |
Msa0539730 | Msa1147010 | 0.808220 | 3.447577e-50 | -8.615850e-47 |
Msa0539730 | Msa1156740 | 0.814623 | 1.402260e-51 | -8.615850e-47 |
Msa0539730 | Msa1202110 | 0.810693 | 1.015274e-50 | -8.615850e-47 |
Msa0539730 | Msa1211610 | 0.807059 | 6.081665e-50 | -8.615850e-47 |
Msa0539730 | Msa1223960 | 0.820537 | 6.509909e-53 | -8.615850e-47 |
Msa0539730 | Msa1223990 | 0.806734 | 7.123812e-50 | -8.615850e-47 |
Msa0539730 | Msa1254870 | 0.812614 | 3.880994e-51 | -8.615850e-47 |
Msa0539730 | Msa1263110 | 0.825932 | 3.579573e-54 | -8.615850e-47 |
Msa0539730 | Msa1279750 | 0.809240 | 2.086099e-50 | -8.615850e-47 |
Msa0539730 | Msa1320160 | 0.802796 | 4.732997e-49 | -8.615850e-47 |
Msa0539730 | Msa1328430 | 0.811473 | 6.880292e-51 | -8.615850e-47 |
Msa0539730 | Msa1357570 | 0.803719 | 3.048062e-49 | -8.615850e-47 |
Msa0539730 | Msa1368420 | 0.809172 | 2.158137e-50 | -8.615850e-47 |
Msa0539730 | Msa1383220 | 0.810631 | 1.047142e-50 | -8.615850e-47 |
Msa0539730 | Msa1399030 | 0.800080 | 1.704173e-48 | -8.615850e-47 |
Msa0539730 | Msa1401280 | 0.807789 | 4.256881e-50 | -8.615850e-47 |
Msa0539730 | Msa1407810 | 0.805185 | 1.508478e-49 | -8.615850e-47 |
Msa0539730 | Msa1436400 | 0.803225 | 3.858859e-49 | -8.615850e-47 |
Msa0539730 | Msa1437780 | 0.805809 | 1.115687e-49 | -8.615850e-47 |
Msa0539730 | Msa1453890 | 0.801541 | 8.575408e-49 | -8.615850e-47 |
Msa0539730 | Msa1455360 | 0.817663 | 2.934066e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0539730 | MtrunA17_Chr4g0014801 | 94.614 | 557 | 30 | 0 | 1 | 557 | 1 | 557 | 0.0 | 1050 |
Msa0539730 | MtrunA17_Chr4g0014781 | 89.946 | 557 | 56 | 0 | 1 | 557 | 1 | 557 | 0.0 | 1017 |
Msa0539730 | MtrunA17_Chr4g0014871 | 84.973 | 559 | 82 | 2 | 1 | 557 | 1 | 559 | 0.0 | 988 |
Msa0539730 | MtrunA17_Chr4g0014841 | 87.253 | 557 | 69 | 1 | 1 | 557 | 1 | 555 | 0.0 | 977 |
Msa0539730 | MtrunA17_Chr4g0014791 | 86.201 | 558 | 73 | 2 | 1 | 557 | 1 | 555 | 0.0 | 976 |
Msa0539730 | MtrunA17_Chr4g0014861 | 85.383 | 431 | 62 | 1 | 125 | 554 | 1 | 431 | 0.0 | 768 |
Msa0539730 | MtrunA17_Chr3g0077151 | 66.606 | 545 | 171 | 4 | 13 | 555 | 12 | 547 | 0.0 | 718 |
Msa0539730 | MtrunA17_Chr8g0353031 | 46.961 | 543 | 256 | 7 | 30 | 551 | 19 | 550 | 1.34e-161 | 472 |
Msa0539730 | MtrunA17_Chr8g0375311 | 41.239 | 565 | 300 | 8 | 10 | 548 | 21 | 579 | 5.26e-156 | 458 |
Msa0539730 | MtrunA17_Chr7g0241741 | 41.062 | 565 | 308 | 7 | 8 | 551 | 1 | 561 | 9.09e-155 | 454 |
Msa0539730 | MtrunA17_Chr8g0375291 | 42.549 | 557 | 292 | 8 | 10 | 542 | 21 | 573 | 2.45e-153 | 451 |
Msa0539730 | MtrunA17_Chr7g0261811 | 40.391 | 562 | 311 | 6 | 17 | 557 | 15 | 573 | 3.63e-151 | 446 |
Msa0539730 | MtrunA17_Chr4g0005901 | 40.426 | 564 | 311 | 6 | 10 | 552 | 13 | 572 | 1.81e-150 | 444 |
Msa0539730 | MtrunA17_Chr3g0112671 | 39.076 | 563 | 306 | 9 | 10 | 551 | 14 | 560 | 3.79e-148 | 438 |
Msa0539730 | MtrunA17_Chr3g0104011 | 40.949 | 569 | 301 | 9 | 10 | 551 | 3 | 563 | 7.50e-148 | 437 |
Msa0539730 | MtrunA17_Chr7g0261791 | 39.964 | 558 | 308 | 6 | 17 | 551 | 17 | 570 | 1.04e-147 | 438 |
Msa0539730 | MtrunA17_Chr3g0114501 | 40.323 | 558 | 312 | 7 | 17 | 555 | 10 | 565 | 1.64e-147 | 437 |
Msa0539730 | MtrunA17_Chr3g0112611 | 39.192 | 569 | 316 | 8 | 3 | 551 | 11 | 569 | 5.02e-147 | 436 |
Msa0539730 | MtrunA17_Chr1g0166791 | 41.293 | 557 | 301 | 8 | 17 | 551 | 12 | 564 | 7.75e-147 | 435 |
Msa0539730 | MtrunA17_Chr4g0008651 | 39.029 | 556 | 312 | 6 | 17 | 552 | 22 | 570 | 8.92e-147 | 435 |
Msa0539730 | MtrunA17_Chr7g0240381 | 39.068 | 558 | 303 | 9 | 17 | 552 | 17 | 559 | 3.69e-145 | 431 |
Msa0539730 | MtrunA17_Chr8g0375351 | 40.391 | 562 | 303 | 8 | 17 | 552 | 28 | 583 | 9.34e-145 | 429 |
Msa0539730 | MtrunA17_Chr8g0375341 | 40.143 | 558 | 302 | 9 | 17 | 548 | 28 | 579 | 6.07e-144 | 427 |
Msa0539730 | MtrunA17_Chr7g0261881 | 37.722 | 562 | 326 | 6 | 17 | 557 | 15 | 573 | 1.55e-142 | 424 |
Msa0539730 | MtrunA17_Chr1g0166711 | 40.647 | 556 | 305 | 8 | 17 | 551 | 13 | 564 | 1.97e-140 | 419 |
Msa0539730 | MtrunA17_Chr1g0187241 | 38.959 | 557 | 314 | 7 | 17 | 551 | 14 | 566 | 1.42e-139 | 417 |
Msa0539730 | MtrunA17_Chr8g0375361 | 39.685 | 572 | 317 | 7 | 1 | 548 | 11 | 578 | 2.93e-139 | 416 |
Msa0539730 | MtrunA17_Chr8g0375331 | 39.024 | 574 | 313 | 9 | 1 | 548 | 1 | 563 | 9.90e-139 | 414 |
Msa0539730 | MtrunA17_Chr8g0375321 | 38.710 | 558 | 310 | 8 | 17 | 548 | 25 | 576 | 2.07e-138 | 413 |
Msa0539730 | MtrunA17_Chr7g0261771 | 37.882 | 557 | 320 | 6 | 17 | 551 | 19 | 571 | 6.22e-138 | 413 |
Msa0539730 | MtrunA17_Chr1g0166741 | 38.920 | 537 | 295 | 8 | 17 | 531 | 15 | 540 | 7.97e-134 | 401 |
Msa0539730 | MtrunA17_Chr1g0166771 | 40.864 | 509 | 268 | 8 | 48 | 534 | 10 | 507 | 9.95e-129 | 387 |
Msa0539730 | MtrunA17_Chr7g0261851 | 36.266 | 557 | 329 | 6 | 17 | 551 | 16 | 568 | 4.48e-127 | 385 |
Msa0539730 | MtrunA17_Chr5g0422881 | 38.129 | 556 | 313 | 10 | 28 | 554 | 19 | 572 | 2.45e-124 | 377 |
Msa0539730 | MtrunA17_Chr3g0082631 | 42.887 | 471 | 233 | 9 | 111 | 557 | 9 | 467 | 3.24e-124 | 373 |
Msa0539730 | MtrunA17_Chr5g0399061 | 37.961 | 569 | 322 | 8 | 12 | 553 | 10 | 574 | 9.25e-123 | 373 |
Msa0539730 | MtrunA17_Chr5g0399071 | 39.199 | 574 | 316 | 9 | 8 | 553 | 4 | 572 | 9.64e-123 | 373 |
Msa0539730 | MtrunA17_Chr4g0056431 | 38.515 | 579 | 316 | 8 | 8 | 553 | 4 | 575 | 1.18e-122 | 373 |
Msa0539730 | MtrunA17_Chr3g0142101 | 38.104 | 559 | 311 | 12 | 9 | 545 | 15 | 560 | 3.16e-122 | 372 |
Msa0539730 | MtrunA17_Chr6g0451841 | 38.603 | 544 | 298 | 9 | 36 | 557 | 12 | 541 | 3.86e-122 | 370 |
Msa0539730 | MtrunA17_Chr7g0255621 | 36.804 | 557 | 317 | 11 | 25 | 553 | 16 | 565 | 6.46e-119 | 364 |
Msa0539730 | MtrunA17_Chr7g0255611 | 34.912 | 570 | 330 | 12 | 1 | 541 | 7 | 564 | 4.64e-115 | 353 |
Msa0539730 | MtrunA17_Chr7g0255601 | 34.904 | 573 | 342 | 9 | 9 | 554 | 7 | 575 | 2.05e-113 | 350 |
Msa0539730 | MtrunA17_Chr7g0217461 | 36.778 | 571 | 326 | 11 | 10 | 550 | 5 | 570 | 2.66e-113 | 349 |
Msa0539730 | MtrunA17_Chr7g0214461 | 34.767 | 558 | 328 | 11 | 23 | 557 | 72 | 616 | 4.80e-111 | 344 |
Msa0539730 | MtrunA17_Chr3g0142091 | 35.727 | 557 | 323 | 11 | 15 | 548 | 12 | 556 | 2.60e-107 | 333 |
Msa0539730 | MtrunA17_Chr4g0063591 | 38.949 | 552 | 308 | 8 | 16 | 545 | 9 | 553 | 5.11e-107 | 332 |
Msa0539730 | MtrunA17_Chr5g0400371 | 34.549 | 576 | 341 | 10 | 3 | 548 | 86 | 655 | 5.14e-107 | 335 |
Msa0539730 | MtrunA17_Chr5g0415791 | 34.291 | 557 | 324 | 8 | 29 | 551 | 29 | 577 | 5.13e-106 | 330 |
Msa0539730 | MtrunA17_Chr4g0054891 | 35.097 | 567 | 327 | 13 | 10 | 546 | 91 | 646 | 1.75e-105 | 331 |
Msa0539730 | MtrunA17_Chr1g0213711 | 34.664 | 551 | 316 | 11 | 27 | 548 | 19 | 554 | 6.85e-105 | 327 |
Msa0539730 | MtrunA17_Chr1g0166731 | 39.474 | 456 | 251 | 8 | 116 | 550 | 9 | 460 | 9.32e-105 | 323 |
Msa0539730 | MtrunA17_Chr4g0059971 | 35.401 | 548 | 322 | 9 | 35 | 552 | 40 | 585 | 3.69e-103 | 323 |
Msa0539730 | MtrunA17_Chr5g0415961 | 34.197 | 579 | 339 | 12 | 11 | 555 | 6 | 576 | 1.29e-101 | 318 |
Msa0539730 | MtrunA17_Chr2g0284701 | 32.432 | 592 | 359 | 10 | 2 | 555 | 4 | 592 | 1.83e-101 | 318 |
Msa0539730 | MtrunA17_Chr3g0133341 | 34.000 | 550 | 331 | 9 | 25 | 551 | 10 | 550 | 9.25e-101 | 316 |
Msa0539730 | MtrunA17_Chr7g0261751 | 36.117 | 479 | 245 | 7 | 17 | 437 | 19 | 494 | 9.75e-101 | 314 |
Msa0539730 | MtrunA17_Chr7g0218851 | 33.453 | 559 | 322 | 13 | 23 | 548 | 40 | 581 | 2.15e-100 | 316 |
Msa0539730 | MtrunA17_Chr7g0261661 | 35.746 | 456 | 269 | 6 | 117 | 551 | 1 | 453 | 3.49e-100 | 312 |
Msa0539730 | MtrunA17_Chr8g0362711 | 34.501 | 571 | 333 | 9 | 18 | 555 | 13 | 575 | 3.51e-100 | 314 |
Msa0539730 | MtrunA17_Chr2g0276751 | 34.884 | 559 | 333 | 10 | 10 | 551 | 19 | 563 | 4.06e-100 | 315 |
Msa0539730 | MtrunA17_Chr4g0059991 | 34.244 | 549 | 324 | 10 | 35 | 550 | 28 | 572 | 2.55e-99 | 313 |
Msa0539730 | MtrunA17_Chr1g0157611 | 33.748 | 563 | 334 | 10 | 16 | 548 | 1 | 554 | 2.80e-98 | 309 |
Msa0539730 | MtrunA17_Chr8g0362781 | 32.562 | 562 | 340 | 9 | 23 | 550 | 24 | 580 | 2.15e-97 | 307 |
Msa0539730 | MtrunA17_Chr8g0390331 | 34.234 | 555 | 326 | 11 | 23 | 548 | 9 | 553 | 6.01e-97 | 306 |
Msa0539730 | MtrunA17_Chr5g0439381 | 36.201 | 558 | 316 | 10 | 17 | 551 | 16 | 556 | 4.81e-95 | 301 |
Msa0539730 | MtrunA17_Chr7g0214731 | 32.432 | 555 | 336 | 10 | 30 | 550 | 62 | 611 | 5.92e-95 | 303 |
Msa0539730 | MtrunA17_Chr4g0011041 | 32.149 | 563 | 343 | 9 | 17 | 548 | 24 | 578 | 1.05e-94 | 300 |
Msa0539730 | MtrunA17_Chr4g0059981 | 33.106 | 586 | 349 | 11 | 3 | 557 | 14 | 587 | 1.71e-94 | 300 |
Msa0539730 | MtrunA17_Chr1g0157601 | 32.682 | 563 | 339 | 13 | 16 | 548 | 1 | 553 | 5.25e-94 | 298 |
Msa0539730 | MtrunA17_Chr8g0379971 | 32.598 | 589 | 348 | 10 | 15 | 554 | 6 | 594 | 2.68e-93 | 297 |
Msa0539730 | MtrunA17_Chr1g0147631 | 32.399 | 571 | 344 | 12 | 4 | 548 | 10 | 564 | 1.77e-92 | 295 |
Msa0539730 | MtrunA17_Chr4g0060001 | 32.914 | 556 | 336 | 10 | 27 | 553 | 27 | 574 | 4.29e-92 | 294 |
Msa0539730 | MtrunA17_Chr1g0157621 | 33.525 | 522 | 313 | 9 | 53 | 548 | 4 | 517 | 1.11e-89 | 286 |
Msa0539730 | MtrunA17_Chr4g0069581 | 35.318 | 487 | 282 | 11 | 87 | 552 | 44 | 518 | 1.37e-89 | 286 |
Msa0539730 | MtrunA17_Chr4g0003761 | 32.486 | 551 | 339 | 11 | 25 | 550 | 27 | 569 | 2.79e-88 | 284 |
Msa0539730 | MtrunA17_Chr2g0331521 | 31.657 | 537 | 333 | 10 | 40 | 548 | 33 | 563 | 4.58e-88 | 283 |
Msa0539730 | MtrunA17_Chr4g0011471 | 31.629 | 528 | 324 | 9 | 50 | 548 | 37 | 556 | 5.54e-87 | 280 |
Msa0539730 | MtrunA17_Chr1g0193391 | 31.115 | 556 | 354 | 11 | 17 | 553 | 3 | 548 | 1.92e-86 | 280 |
Msa0539730 | MtrunA17_Chr2g0331471 | 33.391 | 575 | 336 | 17 | 10 | 550 | 68 | 629 | 2.17e-86 | 282 |
Msa0539730 | MtrunA17_Chr7g0271221 | 32.472 | 542 | 339 | 10 | 29 | 553 | 17 | 548 | 3.38e-86 | 278 |
Msa0539730 | MtrunA17_Chr7g0240271 | 29.735 | 565 | 357 | 8 | 17 | 549 | 12 | 568 | 5.08e-86 | 278 |
Msa0539730 | MtrunA17_Chr2g0331481 | 31.250 | 576 | 348 | 15 | 10 | 550 | 4 | 566 | 1.31e-84 | 275 |
Msa0539730 | MtrunA17_Chr2g0331511 | 29.806 | 567 | 362 | 9 | 10 | 548 | 4 | 562 | 9.37e-84 | 273 |
Msa0539730 | MtrunA17_Chr8g0379991 | 33.570 | 563 | 308 | 11 | 58 | 556 | 9 | 569 | 8.39e-83 | 269 |
Msa0539730 | MtrunA17_Chr1g0177591 | 31.273 | 550 | 341 | 14 | 19 | 550 | 34 | 564 | 7.64e-82 | 266 |
Msa0539730 | MtrunA17_Chr8g0362801 | 34.483 | 464 | 268 | 8 | 119 | 551 | 3 | 461 | 6.68e-80 | 258 |
Msa0539730 | MtrunA17_Chr2g0331461 | 30.957 | 575 | 351 | 15 | 10 | 550 | 4 | 566 | 1.12e-79 | 262 |
Msa0539730 | MtrunA17_Chr7g0261731 | 39.339 | 333 | 177 | 5 | 17 | 327 | 19 | 348 | 7.07e-78 | 249 |
Msa0539730 | MtrunA17_Chr7g0240281 | 30.700 | 557 | 344 | 8 | 27 | 549 | 22 | 570 | 1.27e-77 | 256 |
Msa0539730 | MtrunA17_Chr3g0112631 | 41.852 | 270 | 151 | 3 | 287 | 551 | 4 | 272 | 1.05e-75 | 241 |
Msa0539730 | MtrunA17_Chr5g0415841 | 32.311 | 424 | 261 | 6 | 146 | 551 | 44 | 459 | 4.48e-72 | 238 |
Msa0539730 | MtrunA17_Chr2g0326211 | 30.944 | 572 | 336 | 13 | 16 | 552 | 1 | 548 | 1.22e-70 | 236 |
Msa0539730 | MtrunA17_Chr2g0325951 | 29.772 | 571 | 344 | 13 | 16 | 552 | 1 | 548 | 2.01e-69 | 233 |
Msa0539730 | MtrunA17_Chr2g0325961 | 30.017 | 573 | 341 | 11 | 16 | 552 | 1 | 549 | 6.15e-68 | 229 |
Msa0539730 | MtrunA17_Chr7g0235521 | 30.290 | 449 | 277 | 8 | 127 | 549 | 19 | 457 | 9.90e-65 | 219 |
Msa0539730 | MtrunA17_Chr1g0177611 | 30.531 | 452 | 279 | 13 | 117 | 550 | 1 | 435 | 1.16e-64 | 218 |
Msa0539730 | MtrunA17_Chr7g0240131 | 30.067 | 449 | 278 | 8 | 127 | 549 | 19 | 457 | 1.71e-63 | 215 |
Msa0539730 | MtrunA17_Chr7g0240181 | 30.067 | 449 | 278 | 8 | 127 | 549 | 19 | 457 | 1.89e-63 | 215 |
Msa0539730 | MtrunA17_Chr7g0240211 | 30.067 | 449 | 278 | 8 | 127 | 549 | 19 | 457 | 2.43e-63 | 215 |
Msa0539730 | MtrunA17_Chr1g0177631 | 29.778 | 450 | 283 | 12 | 117 | 548 | 1 | 435 | 1.61e-61 | 209 |
Msa0539730 | MtrunA17_Chr4g0014851 | 81.897 | 116 | 20 | 1 | 1 | 115 | 1 | 116 | 2.46e-61 | 199 |
Msa0539730 | MtrunA17_Chr4g0060071 | 38.376 | 271 | 162 | 4 | 282 | 551 | 32 | 298 | 1.12e-59 | 200 |
Msa0539730 | MtrunA17_Chr3g0142111 | 40.149 | 269 | 150 | 3 | 9 | 268 | 26 | 292 | 3.47e-58 | 197 |
Msa0539730 | MtrunA17_Chr7g0240151 | 28.795 | 448 | 267 | 8 | 127 | 549 | 19 | 439 | 8.57e-58 | 200 |
Msa0539730 | MtrunA17_Chr3g0142121 | 37.931 | 261 | 150 | 4 | 287 | 545 | 12 | 262 | 1.45e-54 | 186 |
Msa0539730 | MtrunA17_Chr7g0234181 | 29.782 | 413 | 267 | 6 | 137 | 548 | 23 | 413 | 7.46e-50 | 177 |
Msa0539730 | MtrunA17_Chr7g0234151 | 29.385 | 439 | 281 | 8 | 116 | 548 | 3 | 418 | 1.80e-49 | 176 |
Msa0539730 | MtrunA17_Chr7g0234381 | 29.224 | 438 | 283 | 8 | 116 | 548 | 3 | 418 | 2.62e-48 | 173 |
Msa0539730 | MtrunA17_Chr7g0261721 | 38.000 | 200 | 123 | 1 | 352 | 551 | 3 | 201 | 9.41e-47 | 163 |
Msa0539730 | MtrunA17_Chr3g0112651 | 39.610 | 154 | 82 | 3 | 116 | 261 | 21 | 171 | 1.25e-30 | 119 |
Msa0539730 | MtrunA17_Chr3g0112661 | 44.068 | 118 | 65 | 1 | 15 | 132 | 17 | 133 | 4.62e-30 | 114 |
Msa0539730 | MtrunA17_Chr1g0166721 | 51.515 | 99 | 48 | 0 | 17 | 115 | 13 | 111 | 8.74e-29 | 111 |
Msa0539730 | MtrunA17_Chr1g0147591 | 30.808 | 198 | 121 | 7 | 141 | 324 | 3 | 198 | 1.40e-25 | 104 |
Msa0539730 | MtrunA17_Chr7g0261671 | 44.444 | 99 | 55 | 0 | 17 | 115 | 20 | 118 | 4.06e-25 | 100 |
Msa0539730 | MtrunA17_Chr3g0082621 | 51.389 | 72 | 35 | 0 | 44 | 115 | 1 | 72 | 7.20e-20 | 84.3 |
Msa0539730 | MtrunA17_Chr2g0326221 | 25.941 | 239 | 147 | 3 | 313 | 551 | 15 | 223 | 1.86e-19 | 87.4 |
Msa0539730 | MtrunA17_Chr4g0060061 | 38.614 | 101 | 61 | 1 | 138 | 238 | 17 | 116 | 4.07e-17 | 78.2 |
Msa0539730 | MtrunA17_Chr7g0261831 | 29.310 | 174 | 106 | 3 | 251 | 407 | 3 | 176 | 2.80e-16 | 78.2 |
Msa0539730 | MtrunA17_Chr1g0147581 | 36.283 | 113 | 64 | 2 | 414 | 525 | 11 | 116 | 1.92e-15 | 72.8 |
Msa0539730 | MtrunA17_Chr4g0060051 | 33.010 | 103 | 69 | 0 | 10 | 112 | 3 | 105 | 9.10e-13 | 65.5 |
Msa0539730 | MtrunA17_Chr7g0240221 | 26.263 | 99 | 73 | 0 | 17 | 115 | 15 | 113 | 2.50e-12 | 63.9 |
Msa0539730 | MtrunA17_Chr7g0240191 | 26.263 | 99 | 73 | 0 | 17 | 115 | 15 | 113 | 2.50e-12 | 63.9 |
Msa0539730 | MtrunA17_Chr7g0240161 | 26.263 | 99 | 73 | 0 | 17 | 115 | 15 | 113 | 2.50e-12 | 63.9 |
Msa0539730 | MtrunA17_Chr7g0261821 | 42.857 | 63 | 36 | 0 | 489 | 551 | 1 | 63 | 7.73e-12 | 60.8 |
Msa0539730 | MtrunA17_Chr7g0240141 | 25.253 | 99 | 74 | 0 | 17 | 115 | 15 | 113 | 9.71e-12 | 62.4 |
Msa0539730 | MtrunA17_Chr8g0362791 | 36.364 | 77 | 49 | 0 | 35 | 111 | 42 | 118 | 9.63e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0539730 | AT1G22540.1 | 63.538 | 554 | 190 | 2 | 10 | 556 | 9 | 557 | 0.0 | 686 |
Msa0539730 | AT1G72125.1 | 57.603 | 559 | 228 | 6 | 1 | 552 | 1 | 557 | 0.0 | 626 |
Msa0539730 | AT1G72120.1 | 57.679 | 560 | 222 | 8 | 1 | 552 | 1 | 553 | 0.0 | 611 |
Msa0539730 | AT1G72140.1 | 56.000 | 550 | 212 | 5 | 16 | 551 | 19 | 552 | 0.0 | 605 |
Msa0539730 | AT1G22550.1 | 55.556 | 567 | 228 | 6 | 1 | 552 | 3 | 560 | 0.0 | 600 |
Msa0539730 | AT1G22570.1 | 55.776 | 554 | 221 | 6 | 16 | 552 | 15 | 561 | 0.0 | 581 |
Msa0539730 | AT1G22570.2 | 55.492 | 528 | 211 | 6 | 42 | 552 | 4 | 524 | 0.0 | 548 |
Msa0539730 | AT1G72130.1 | 53.008 | 532 | 228 | 6 | 29 | 555 | 23 | 537 | 0.0 | 533 |
Msa0539730 | AT3G54450.1 | 43.646 | 543 | 276 | 7 | 29 | 551 | 10 | 542 | 7.29e-166 | 483 |
Msa0539730 | AT2G02040.1 | 40.351 | 570 | 312 | 8 | 3 | 548 | 13 | 578 | 2.01e-148 | 439 |
Msa0539730 | AT5G01180.2 | 40.143 | 558 | 308 | 7 | 17 | 552 | 11 | 564 | 6.79e-148 | 437 |
Msa0539730 | AT5G01180.3 | 40.143 | 558 | 308 | 7 | 17 | 552 | 11 | 564 | 6.79e-148 | 437 |
Msa0539730 | AT5G01180.1 | 40.143 | 558 | 308 | 7 | 17 | 552 | 11 | 564 | 6.79e-148 | 437 |
Msa0539730 | AT3G54140.1 | 39.894 | 564 | 312 | 7 | 10 | 550 | 3 | 562 | 6.94e-148 | 437 |
Msa0539730 | AT3G54140.2 | 39.894 | 564 | 312 | 7 | 10 | 550 | 3 | 562 | 6.94e-148 | 437 |
Msa0539730 | AT3G53960.1 | 39.655 | 580 | 311 | 10 | 3 | 551 | 2 | 573 | 1.49e-146 | 435 |
Msa0539730 | AT2G37900.1 | 40.526 | 570 | 291 | 11 | 10 | 551 | 17 | 566 | 7.26e-146 | 432 |
Msa0539730 | AT1G72130.2 | 51.878 | 426 | 186 | 5 | 133 | 555 | 10 | 419 | 9.98e-146 | 426 |
Msa0539730 | AT1G72130.3 | 51.878 | 426 | 186 | 5 | 133 | 555 | 10 | 419 | 9.98e-146 | 426 |
Msa0539730 | AT1G62200.1 | 40.399 | 552 | 290 | 7 | 17 | 541 | 38 | 577 | 6.35e-143 | 426 |
Msa0539730 | AT2G40460.1 | 39.362 | 564 | 317 | 8 | 11 | 556 | 4 | 560 | 3.21e-138 | 413 |
Msa0539730 | AT2G02020.1 | 40.357 | 560 | 291 | 11 | 3 | 550 | 14 | 542 | 3.68e-138 | 412 |
Msa0539730 | AT1G62200.2 | 38.726 | 581 | 288 | 9 | 17 | 541 | 38 | 606 | 2.93e-136 | 409 |
Msa0539730 | AT1G62200.3 | 38.726 | 581 | 288 | 9 | 17 | 541 | 52 | 620 | 2.98e-136 | 410 |
Msa0539730 | AT5G46040.1 | 37.757 | 535 | 310 | 5 | 17 | 531 | 13 | 544 | 7.63e-131 | 394 |
Msa0539730 | AT5G46050.1 | 38.036 | 560 | 322 | 6 | 17 | 555 | 13 | 568 | 8.48e-131 | 394 |
Msa0539730 | AT5G14940.1 | 39.411 | 543 | 297 | 10 | 29 | 548 | 5 | 538 | 8.20e-127 | 383 |
Msa0539730 | AT2G37900.2 | 40.711 | 506 | 252 | 11 | 74 | 551 | 2 | 487 | 3.28e-125 | 377 |
Msa0539730 | AT2G02020.2 | 38.998 | 559 | 279 | 13 | 3 | 550 | 14 | 521 | 3.16e-123 | 372 |
Msa0539730 | AT3G01350.1 | 37.937 | 543 | 303 | 9 | 33 | 546 | 9 | 546 | 1.20e-119 | 365 |
Msa0539730 | AT1G69870.1 | 37.209 | 559 | 304 | 11 | 28 | 551 | 48 | 594 | 3.38e-117 | 360 |
Msa0539730 | AT1G68570.1 | 38.561 | 542 | 298 | 7 | 40 | 551 | 32 | 568 | 1.51e-116 | 358 |
Msa0539730 | AT1G68570.2 | 38.547 | 537 | 295 | 7 | 45 | 551 | 7 | 538 | 5.51e-116 | 355 |
Msa0539730 | AT1G32450.1 | 34.501 | 571 | 337 | 8 | 10 | 548 | 16 | 581 | 1.77e-109 | 340 |
Msa0539730 | AT1G12110.1 | 34.708 | 582 | 332 | 11 | 3 | 553 | 7 | 571 | 3.51e-108 | 336 |
Msa0539730 | AT2G26690.1 | 37.184 | 554 | 314 | 9 | 16 | 545 | 9 | 552 | 1.93e-107 | 333 |
Msa0539730 | AT4G21680.1 | 35.590 | 576 | 336 | 13 | 5 | 550 | 2 | 572 | 2.44e-106 | 331 |
Msa0539730 | AT1G18880.1 | 34.775 | 555 | 313 | 12 | 35 | 551 | 23 | 566 | 1.60e-101 | 318 |
Msa0539730 | AT1G52190.1 | 34.375 | 544 | 315 | 10 | 40 | 548 | 30 | 566 | 8.72e-101 | 317 |
Msa0539730 | AT3G21670.1 | 37.143 | 560 | 311 | 11 | 17 | 551 | 15 | 558 | 1.53e-100 | 316 |
Msa0539730 | AT1G27040.1 | 32.230 | 574 | 359 | 9 | 6 | 557 | 2 | 567 | 2.69e-97 | 307 |
Msa0539730 | AT2G26690.2 | 36.433 | 527 | 301 | 9 | 43 | 545 | 3 | 519 | 3.84e-97 | 306 |
Msa0539730 | AT1G27040.2 | 32.504 | 563 | 350 | 8 | 17 | 557 | 9 | 563 | 9.36e-97 | 305 |
Msa0539730 | AT1G59740.1 | 33.627 | 568 | 339 | 10 | 17 | 557 | 27 | 583 | 1.07e-96 | 306 |
Msa0539730 | AT1G33440.1 | 34.843 | 574 | 336 | 10 | 7 | 555 | 14 | 574 | 2.11e-96 | 306 |
Msa0539730 | AT3G16180.1 | 33.810 | 559 | 326 | 12 | 25 | 548 | 16 | 565 | 2.57e-96 | 305 |
Msa0539730 | AT5G46050.2 | 36.463 | 458 | 266 | 6 | 119 | 555 | 3 | 456 | 3.78e-96 | 301 |
Msa0539730 | AT1G69850.1 | 31.857 | 587 | 358 | 10 | 9 | 557 | 3 | 585 | 1.63e-94 | 300 |
Msa0539730 | AT5G62730.1 | 31.393 | 567 | 360 | 9 | 1 | 551 | 32 | 585 | 4.12e-93 | 297 |
Msa0539730 | AT5G62680.1 | 32.849 | 551 | 331 | 10 | 35 | 551 | 47 | 592 | 8.71e-93 | 296 |
Msa0539730 | AT2G26690.3 | 36.047 | 516 | 296 | 9 | 54 | 545 | 2 | 507 | 1.93e-92 | 293 |
Msa0539730 | AT1G27080.1 | 33.698 | 549 | 318 | 12 | 33 | 551 | 16 | 548 | 4.47e-92 | 294 |
Msa0539730 | AT3G47960.1 | 32.734 | 556 | 323 | 12 | 35 | 551 | 65 | 608 | 3.04e-91 | 293 |
Msa0539730 | AT1G27040.3 | 32.775 | 537 | 331 | 8 | 43 | 557 | 7 | 535 | 5.39e-91 | 290 |
Msa0539730 | AT5G13400.1 | 31.794 | 563 | 350 | 8 | 20 | 551 | 52 | 611 | 1.16e-90 | 291 |
Msa0539730 | AT5G19640.1 | 32.182 | 550 | 312 | 15 | 32 | 548 | 60 | 581 | 6.41e-89 | 286 |
Msa0539730 | AT5G62730.2 | 31.450 | 531 | 341 | 8 | 37 | 551 | 3 | 526 | 1.75e-87 | 280 |
Msa0539730 | AT1G27080.2 | 33.654 | 520 | 299 | 12 | 62 | 551 | 3 | 506 | 8.12e-85 | 273 |
Msa0539730 | AT5G28470.2 | 31.475 | 556 | 340 | 14 | 28 | 553 | 14 | 558 | 2.13e-84 | 273 |
Msa0539730 | AT5G28470.1 | 31.295 | 556 | 339 | 15 | 28 | 553 | 14 | 556 | 8.20e-82 | 266 |
Msa0539730 | AT1G69860.1 | 32.541 | 547 | 322 | 11 | 35 | 552 | 22 | 550 | 1.46e-81 | 266 |
Msa0539730 | AT3G25280.1 | 32.836 | 536 | 327 | 11 | 21 | 548 | 11 | 521 | 2.09e-78 | 256 |
Msa0539730 | AT3G25260.1 | 32.358 | 547 | 327 | 14 | 12 | 548 | 2 | 515 | 1.11e-74 | 246 |
Msa0539730 | AT3G45680.1 | 31.294 | 572 | 333 | 14 | 11 | 552 | 2 | 543 | 1.97e-71 | 239 |
Msa0539730 | AT3G45650.1 | 29.391 | 558 | 351 | 12 | 17 | 552 | 8 | 544 | 1.38e-70 | 237 |
Msa0539730 | AT3G45700.1 | 30.364 | 550 | 325 | 12 | 30 | 552 | 15 | 533 | 2.86e-69 | 233 |
Msa0539730 | AT3G45710.1 | 30.521 | 557 | 320 | 12 | 31 | 552 | 21 | 545 | 9.25e-69 | 232 |
Msa0539730 | AT3G45660.1 | 30.651 | 522 | 309 | 12 | 58 | 552 | 48 | 543 | 1.59e-66 | 226 |
Msa0539730 | AT3G45660.3 | 30.651 | 522 | 309 | 12 | 58 | 552 | 48 | 543 | 1.59e-66 | 226 |
Msa0539730 | AT3G45660.2 | 29.553 | 582 | 349 | 14 | 6 | 552 | 9 | 564 | 3.46e-66 | 225 |
Msa0539730 | AT3G45650.2 | 28.082 | 584 | 351 | 13 | 17 | 552 | 8 | 570 | 3.98e-65 | 223 |
Msa0539730 | AT3G45720.1 | 30.518 | 521 | 303 | 13 | 40 | 530 | 28 | 519 | 1.90e-62 | 215 |
Msa0539730 | AT5G11570.1 | 28.215 | 521 | 296 | 12 | 40 | 548 | 22 | 476 | 7.54e-62 | 211 |
Msa0539730 | AT3G45690.1 | 28.918 | 536 | 294 | 15 | 30 | 540 | 17 | 490 | 6.05e-54 | 191 |
Msa0539730 | AT2G38100.2 | 28.269 | 520 | 308 | 17 | 59 | 550 | 2 | 484 | 1.68e-46 | 171 |
Msa0539730 | AT2G38100.1 | 28.215 | 521 | 309 | 17 | 59 | 551 | 18 | 501 | 2.89e-46 | 170 |
Msa0539730 | AT2G38100.3 | 28.215 | 521 | 309 | 17 | 59 | 551 | 24 | 507 | 5.06e-46 | 169 |
Find 131 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGGCTTCAACTTTGGTTTA+TGG | 0.138154 | 4_1:-20912443 | Msa0539730:CDS |
AACCTTGTGTTCAAGCTTTC+GGG | 0.149446 | 4_1:-20913417 | Msa0539730:CDS |
CTTCTAGCTGTGTGCTCTTT+AGG | 0.168298 | 4_1:+20913370 | None:intergenic |
CTAGAAGCTCATTCTTTAAT+TGG | 0.184688 | 4_1:-20913354 | Msa0539730:CDS |
AAACCTGTGAAATAGGATTT+TGG | 0.194400 | 4_1:-20911552 | Msa0539730:three_prime_UTR |
TACTAAGGTTGGTTCCAATT+TGG | 0.200350 | 4_1:-20912463 | Msa0539730:CDS |
GCTACAAATTTCATCTTCTT+TGG | 0.203028 | 4_1:+20912514 | None:intergenic |
GATAACATTAGTTGGGTTCT+TGG | 0.227701 | 4_1:-20913271 | Msa0539730:CDS |
CCCATGCTTCTTAGTTCATT+TGG | 0.244157 | 4_1:+20911993 | None:intergenic |
GCTTCCCTCCTTCCTCTCTT+AGG | 0.246982 | 4_1:-20914562 | Msa0539730:CDS |
TGCTTCTCTTATCTATATAT+TGG | 0.248624 | 4_1:-20914491 | Msa0539730:intron |
CTTCGCTTCAAACGATAAAA+TGG | 0.249694 | 4_1:-20912331 | Msa0539730:CDS |
ATTAGTTGGGTTCTTGGATT+TGG | 0.259493 | 4_1:-20913265 | Msa0539730:CDS |
ACTAAGGTTGGTTCCAATTT+GGG | 0.262407 | 4_1:-20912462 | Msa0539730:CDS |
GACATATAGGTTTAACATTA+AGG | 0.274752 | 4_1:-20913188 | Msa0539730:CDS |
TAACTTATCAACAACGGATT+TGG | 0.276561 | 4_1:-20913098 | Msa0539730:CDS |
AAACCTTGTGTTCAAGCTTT+CGG | 0.280299 | 4_1:-20913418 | Msa0539730:CDS |
TACACGACCAATTCTAATAA+AGG | 0.293012 | 4_1:+20913150 | None:intergenic |
TCCAATTTGGGCTTCAACTT+TGG | 0.295489 | 4_1:-20912450 | Msa0539730:CDS |
CCATGCTTCTTAGTTCATTT+GGG | 0.297304 | 4_1:+20911994 | None:intergenic |
TTAGGTCCGAATCTGGTTAT+TGG | 0.299083 | 4_1:-20915088 | Msa0539730:CDS |
AAGAAACTTAATTATTGAAT+AGG | 0.299446 | 4_1:-20915201 | Msa0539730:five_prime_UTR |
AAGAGTCCCTTTATTAGAAT+TGG | 0.302187 | 4_1:-20913157 | Msa0539730:CDS |
AGGAAGGAGGGAAGCCGTTC+CGG | 0.306844 | 4_1:+20914570 | None:intergenic |
AAGCGATAAACCTGTGAAAT+AGG | 0.318045 | 4_1:-20911559 | Msa0539730:three_prime_UTR |
ACCAAAGTTGAAGCCCAAAT+TGG | 0.319490 | 4_1:+20912449 | None:intergenic |
TGTATTATGCATGTGTTTAG+AGG | 0.324312 | 4_1:-20911633 | Msa0539730:three_prime_UTR |
CTGCTAAGAATGTCAATATT+TGG | 0.333018 | 4_1:-20914594 | Msa0539730:CDS |
ACGAATATGTGCTCATAGAT+AGG | 0.336290 | 4_1:+20912287 | None:intergenic |
ATGGAGAGAACAATATTTCC+TGG | 0.340438 | 4_1:-20912371 | Msa0539730:CDS |
TCATCTTCTTTGGATCCCTT+TGG | 0.350580 | 4_1:+20912524 | None:intergenic |
GCACTCTATTTGAGTATTGT+TGG | 0.352342 | 4_1:-20911966 | Msa0539730:CDS |
CTCCATTGAAGTCCCTTGCT+TGG | 0.358040 | 4_1:+20912388 | None:intergenic |
AGGTTTATCGCTTGCAAACT+TGG | 0.364184 | 4_1:+20911569 | None:intergenic |
ATCACAATGCTTCAAAGAAT+TGG | 0.371798 | 4_1:-20912227 | Msa0539730:CDS |
GCTCAATTAGCTATTGTTGA+TGG | 0.372190 | 4_1:-20915140 | Msa0539730:CDS |
TTGTTGCAGCTATAAGAAAT+TGG | 0.372408 | 4_1:-20913126 | Msa0539730:CDS |
GCGGAGAGGGTATCATATTA+TGG | 0.374011 | 4_1:-20914676 | Msa0539730:CDS |
CAATTGTTCCGATGAGTATA+TGG | 0.402803 | 4_1:-20912100 | Msa0539730:CDS |
TATTGAATAGGTTTGTTTGA+TGG | 0.413794 | 4_1:-20915189 | Msa0539730:exon |
AGATCCGCTTGGTTTATCAT+AGG | 0.431139 | 4_1:-20915065 | Msa0539730:intron |
CACAAAGGCACTACCACATA+AGG | 0.442991 | 4_1:-20911753 | Msa0539730:intron |
ACACGACCAATTCTAATAAA+GGG | 0.444617 | 4_1:+20913151 | None:intergenic |
CCCGCAGTTAGGTCCGAATC+TGG | 0.446760 | 4_1:-20915095 | Msa0539730:CDS |
AACTTGATATCATATCTAAC+AGG | 0.448274 | 4_1:-20914643 | Msa0539730:CDS |
TGCTCGGAAGAAGGACATAT+AGG | 0.451871 | 4_1:-20913201 | Msa0539730:CDS |
ATTTGTATAGAGGAGCTGTT+TGG | 0.459325 | 4_1:-20911659 | Msa0539730:three_prime_UTR |
ACAAAGGACAGCCCGCAGTT+AGG | 0.470650 | 4_1:-20915106 | Msa0539730:CDS |
ATATACAAGATAACATTAGT+TGG | 0.471533 | 4_1:-20913279 | Msa0539730:CDS |
ACTGAGGAGAACAATATGTA+AGG | 0.472580 | 4_1:+20913500 | None:intergenic |
GAAGCTCATTCTTTAATTGG+TGG | 0.474451 | 4_1:-20913351 | Msa0539730:CDS |
AGCTTCTAACAGCACTTCGT+TGG | 0.483350 | 4_1:+20915160 | None:intergenic |
TTGCTTCTTCCACCTCACTA+AGG | 0.484443 | 4_1:+20912492 | None:intergenic |
AAGAATGTCAATATTTGGTC+CGG | 0.487098 | 4_1:-20914589 | Msa0539730:CDS |
GCAAAGATGGTCAAGAAAGT+TGG | 0.489587 | 4_1:-20911890 | Msa0539730:CDS |
GGATCTCCAATAACCAGATT+CGG | 0.490538 | 4_1:+20915082 | None:intergenic |
GTATCATATTATGGAATTCA+AGG | 0.491184 | 4_1:-20914667 | Msa0539730:CDS |
TATACAAGATAACATTAGTT+GGG | 0.492477 | 4_1:-20913278 | Msa0539730:CDS |
CTCATCGGAACAATTGCATT+GGG | 0.492975 | 4_1:+20912107 | None:intergenic |
TTTACATTCTTCACCAAGCA+AGG | 0.493614 | 4_1:-20912401 | Msa0539730:CDS |
GTTATCACCGGAAAACCATC+AGG | 0.503992 | 4_1:-20912251 | Msa0539730:CDS |
CTTGCTGGATTAAGTGTGGT+GGG | 0.506111 | 4_1:-20911819 | Msa0539730:CDS |
ATTCCAAAATCCTATTTCAC+AGG | 0.506292 | 4_1:+20911549 | None:intergenic |
AATCCTTGGCTATCCTTATG+TGG | 0.520497 | 4_1:+20911740 | None:intergenic |
GTTGCAGTGCTTTGTTTGAG+TGG | 0.521993 | 4_1:+20914619 | None:intergenic |
ACTCATCGGAACAATTGCAT+TGG | 0.528928 | 4_1:+20912106 | None:intergenic |
TCCGATGAGTATATGGTGGC+TGG | 0.529133 | 4_1:-20912093 | Msa0539730:CDS |
TCACTCTATCTAGTTGCCAT+TGG | 0.531734 | 4_1:-20913454 | Msa0539730:CDS |
AGCAAAGGCTGTACTAAGGT+TGG | 0.534832 | 4_1:-20912474 | Msa0539730:CDS |
TGAAGCATTGTGATGCCTGA+TGG | 0.537409 | 4_1:+20912236 | None:intergenic |
CCCAAATGAACTAAGAAGCA+TGG | 0.542573 | 4_1:-20911994 | Msa0539730:CDS |
GAGGGAGGTATGTCAAATCC+AGG | 0.544553 | 4_1:+20912353 | None:intergenic |
CTGGTTATTGGAGATCCGCT+TGG | 0.544926 | 4_1:-20915076 | Msa0539730:CDS |
TATTTGAGTATTGTTGGTGT+TGG | 0.547399 | 4_1:-20911960 | Msa0539730:CDS |
CGAATATGTGCTCATAGATA+GGG | 0.550106 | 4_1:+20912288 | None:intergenic |
AGGTGTCGAAGTGGCGGAGA+GGG | 0.552102 | 4_1:-20914689 | Msa0539730:CDS |
AAGGCGTTGCTAACACCAAA+GGG | 0.552716 | 4_1:-20912539 | Msa0539730:CDS |
GCTTGCTGGATTAAGTGTGG+TGG | 0.557942 | 4_1:-20911820 | Msa0539730:CDS |
CGAAAGCACCTAAGAGAGGA+AGG | 0.559132 | 4_1:+20914554 | None:intergenic |
ATGCTTCAAAGAATTGGCAC+TGG | 0.559271 | 4_1:-20912221 | Msa0539730:CDS |
TTTATCGTTTGAAGCGAAGA+GGG | 0.565404 | 4_1:+20912335 | None:intergenic |
GCCCCGAAAGCTTGAACACA+AGG | 0.567096 | 4_1:+20913415 | None:intergenic |
AGCACCTAAGAGAGGAAGGA+GGG | 0.574375 | 4_1:+20914558 | None:intergenic |
CACCAAGCAAGGGACTTCAA+TGG | 0.574912 | 4_1:-20912390 | Msa0539730:CDS |
GGTGTTGGAAGCTTTCTAAG+TGG | 0.575161 | 4_1:-20911945 | Msa0539730:CDS |
GCGAAATAACTTATCAACAA+CGG | 0.576311 | 4_1:-20913104 | Msa0539730:CDS |
GGAGAACAATATGTAAGGGA+AGG | 0.577683 | 4_1:+20913505 | None:intergenic |
TTTATGCCCACCTTGTCCAA+TGG | 0.578469 | 4_1:+20913438 | None:intergenic |
TGTCAATATTTGGTCCGGAA+CGG | 0.578632 | 4_1:-20914584 | Msa0539730:CDS |
TTGTTTAGGTGTCGAAGTGG+CGG | 0.578707 | 4_1:-20914695 | Msa0539730:intron |
CCAAATGAACTAAGAAGCAT+GGG | 0.579849 | 4_1:-20911993 | Msa0539730:CDS |
AAGAAGCAAAGGCTGTACTA+AGG | 0.584489 | 4_1:-20912478 | Msa0539730:CDS |
TATCTAGTTGCCATTGGACA+AGG | 0.587068 | 4_1:-20913448 | Msa0539730:CDS |
TATCATATTATGGAATTCAA+GGG | 0.587902 | 4_1:-20914666 | Msa0539730:CDS |
ACTCCAAACAGAAAATATTG+AGG | 0.590882 | 4_1:+20912068 | None:intergenic |
CCGGTGATAACTCTTGCTAG+TGG | 0.591715 | 4_1:+20912263 | None:intergenic |
CCAGATTCGGACCTAACTGC+GGG | 0.591748 | 4_1:+20915095 | None:intergenic |
TAATACAATTTACAGGGACT+AGG | 0.592138 | 4_1:-20913553 | Msa0539730:intron |
CTGAGGAGAACAATATGTAA+GGG | 0.592564 | 4_1:+20913501 | None:intergenic |
AATTTGTAGCCTTAGTGAGG+TGG | 0.592896 | 4_1:-20912501 | Msa0539730:CDS |
TAGTGAGGTGGAAGAAGCAA+AGG | 0.594771 | 4_1:-20912489 | Msa0539730:CDS |
ACCTTGTGTTCAAGCTTTCG+GGG | 0.599219 | 4_1:-20913416 | Msa0539730:CDS |
CAAGGCGTTGCTAACACCAA+AGG | 0.599621 | 4_1:-20912540 | Msa0539730:CDS |
CAATGGTAGCTTCCTCAACA+AGG | 0.603095 | 4_1:-20912558 | Msa0539730:intron |
TGAAATTTGTAGCCTTAGTG+AGG | 0.604564 | 4_1:-20912504 | Msa0539730:CDS |
TTACATTCTTCACCAAGCAA+GGG | 0.604573 | 4_1:-20912400 | Msa0539730:CDS |
GCGATGATCATTACAACACA+AGG | 0.605088 | 4_1:+20913238 | None:intergenic |
AAGCACCTAAGAGAGGAAGG+AGG | 0.605702 | 4_1:+20914557 | None:intergenic |
GCAACGAAAGCACCTAAGAG+AGG | 0.607557 | 4_1:+20914550 | None:intergenic |
GAGAACAATATGTAAGGGAA+GGG | 0.609361 | 4_1:+20913506 | None:intergenic |
AATAAGATTACTTGTGACTG+AGG | 0.611966 | 4_1:+20913484 | None:intergenic |
ACCAGCCACCATATACTCAT+CGG | 0.615921 | 4_1:+20912092 | None:intergenic |
GTTGCTTGCTGGATTAAGTG+TGG | 0.616052 | 4_1:-20911823 | Msa0539730:CDS |
CTAGTTGCCATTGGACAAGG+TGG | 0.620501 | 4_1:-20913445 | Msa0539730:CDS |
TCTTATATTTATAATCACAA+AGG | 0.621706 | 4_1:-20911768 | Msa0539730:CDS |
GGAGCATATTGTGACGTAGA+CGG | 0.624275 | 4_1:-20911612 | Msa0539730:three_prime_UTR |
GGGCTGTCCTTTGTAATCAA+CGG | 0.635317 | 4_1:+20915115 | None:intergenic |
ACCAGATTCGGACCTAACTG+CGG | 0.636959 | 4_1:+20915094 | None:intergenic |
GTGTTAGCAACGCCTTGTTG+AGG | 0.637295 | 4_1:+20912546 | None:intergenic |
CCACTAGCAAGAGTTATCAC+CGG | 0.641489 | 4_1:-20912263 | Msa0539730:CDS |
ATCGTTTGAAGCGAAGAGGG+AGG | 0.642861 | 4_1:+20912338 | None:intergenic |
TAGTTGCCATTGGACAAGGT+GGG | 0.664534 | 4_1:-20913444 | Msa0539730:CDS |
GGCAACTAGATAGAGTGAGA+CGG | 0.672164 | 4_1:+20913459 | None:intergenic |
GATGGCGCCGTTGATTACAA+AGG | 0.673450 | 4_1:-20915122 | Msa0539730:CDS |
TAGGTGTCGAAGTGGCGGAG+AGG | 0.678991 | 4_1:-20914690 | Msa0539730:CDS |
CGATGATCATTACAACACAA+GGG | 0.690961 | 4_1:+20913239 | None:intergenic |
GATTTGGAAGAAGAATGTGA+TGG | 0.693639 | 4_1:-20913082 | Msa0539730:CDS |
TTGTGTTCAAGCTTTCGGGG+CGG | 0.695110 | 4_1:-20913413 | Msa0539730:CDS |
CTAAAGATAGCACAACAACA+CGG | 0.701939 | 4_1:-20912143 | Msa0539730:CDS |
TGTACCTATGATAAACCAAG+CGG | 0.704715 | 4_1:+20915061 | None:intergenic |
TTGTTCCGATGAGTATATGG+TGG | 0.735995 | 4_1:-20912097 | Msa0539730:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TGTTTTTATCATAATAATTA+AGG | - | chr4_1:20911686-20911705 | Msa0539730:three_prime_UTR | 10.0% |
!!! | AAATGATTCTAAAATAATTT+TGG | + | chr4_1:20912771-20912790 | None:intergenic | 10.0% |
!! | TGTATGATATATTAAAAAAA+TGG | - | chr4_1:20913083-20913102 | Msa0539730:CDS | 10.0% |
!!! | AATTTTTATATCAATATTCA+TGG | - | chr4_1:20914509-20914528 | Msa0539730:CDS | 10.0% |
!! | AAGAAACTTAATTATTGAAT+AGG | - | chr4_1:20911506-20911525 | Msa0539730:three_prime_UTR | 15.0% |
!! | TTTATCATAATAATTAAGGT+TGG | - | chr4_1:20911690-20911709 | Msa0539730:three_prime_UTR | 15.0% |
!! | AAAGAGATATAAAATTGATT+TGG | + | chr4_1:20911932-20911951 | None:intergenic | 15.0% |
!!! | TCAATTACTTTCTTTTTAAA+TGG | - | chr4_1:20911959-20911978 | Msa0539730:CDS | 15.0% |
!! | CAATTATTGTACATTATTAA+CGG | - | chr4_1:20913910-20913929 | Msa0539730:intron | 15.0% |
!! | TCTTATATTTATAATCACAA+AGG | - | chr4_1:20914939-20914958 | Msa0539730:intron | 15.0% |
!!! | GTTTTTTGTTTTTTTATCAA+AGG | - | chr4_1:20914994-20915013 | Msa0539730:intron | 15.0% |
!!! | TTTTATACATATTTGTATAG+AGG | - | chr4_1:20915038-20915057 | Msa0539730:intron | 15.0% |
!!! | GAATTATGAATGTTTTGTTT+AGG | - | chr4_1:20911998-20912017 | Msa0539730:CDS | 20.0% |
!! | TATCATATTATGGAATTCAA+GGG | - | chr4_1:20912041-20912060 | Msa0539730:CDS | 20.0% |
!!! | TTTTTACACTCTAAAATGAA+TGG | - | chr4_1:20912276-20912295 | Msa0539730:CDS | 20.0% |
!!! | TTCATTTTAGGAGAAATTTT+CGG | - | chr4_1:20912340-20912359 | Msa0539730:CDS | 20.0% |
!!! | AAAGAATTAATTTTGACTGA+TGG | + | chr4_1:20912429-20912448 | None:intergenic | 20.0% |
!! | ATATACAAGATAACATTAGT+TGG | - | chr4_1:20913428-20913447 | Msa0539730:CDS | 20.0% |
!! | TATACAAGATAACATTAGTT+GGG | - | chr4_1:20913429-20913448 | Msa0539730:CDS | 20.0% |
!! | TGAGAGAAAGATTAATTATT+TGG | - | chr4_1:20913971-20913990 | Msa0539730:intron | 20.0% |
!! | AATTTGATTACAATAAGTGT+TGG | - | chr4_1:20914010-20914029 | Msa0539730:intron | 20.0% |
!!! | CACATTTTGATTACTTTTAT+TGG | - | chr4_1:20914862-20914881 | Msa0539730:intron | 20.0% |
!! | AACAAAAAACAAAAAATCCT+TGG | + | chr4_1:20914984-20915003 | None:intergenic | 20.0% |
!! | TATTGAATAGGTTTGTTTGA+TGG | - | chr4_1:20911518-20911537 | Msa0539730:three_prime_UTR | 25.0% |
!!! | TCTTTTTGAACCTTTAGTTT+TGG | - | chr4_1:20911819-20911838 | Msa0539730:CDS | 25.0% |
! | GTAAAAAGTTTAGCTAGATA+GGG | + | chr4_1:20911869-20911888 | None:intergenic | 25.0% |
! | AGTAAAAAGTTTAGCTAGAT+AGG | + | chr4_1:20911870-20911889 | None:intergenic | 25.0% |
!!! | GAGATATAAAATTGATTTGG+TGG | + | chr4_1:20911929-20911948 | None:intergenic | 25.0% |
!!! | TTTTAAATGGTGATGAGAAT+TGG | - | chr4_1:20911972-20911991 | Msa0539730:CDS | 25.0% |
! | GTATCATATTATGGAATTCA+AGG | - | chr4_1:20912040-20912059 | Msa0539730:CDS | 25.0% |
! | AACTTGATATCATATCTAAC+AGG | - | chr4_1:20912064-20912083 | Msa0539730:CDS | 25.0% |
! | TGCTTCTCTTATCTATATAT+TGG | - | chr4_1:20912216-20912235 | Msa0539730:CDS | 25.0% |
!! | AATTTTTACGCCATAGTTAA+TGG | - | chr4_1:20912317-20912336 | Msa0539730:CDS | 25.0% |
! | CTAAAATGAACCATTAACTA+TGG | + | chr4_1:20912330-20912349 | None:intergenic | 25.0% |
!! | CATAGTTAATGGTTCATTTT+AGG | - | chr4_1:20912328-20912347 | Msa0539730:CDS | 25.0% |
!!! | TTGGATGAGAACTTTTATTT+TGG | - | chr4_1:20912374-20912393 | Msa0539730:CDS | 25.0% |
! | TGTTATATATGTTAAACGTC+CGG | + | chr4_1:20912599-20912618 | None:intergenic | 25.0% |
!!! | ATATAGAGACACTTTTAGTT+TGG | - | chr4_1:20912695-20912714 | Msa0539730:intron | 25.0% |
! | TTGCACAAATAAATTCGAAA+TGG | + | chr4_1:20912997-20913016 | None:intergenic | 25.0% |
!! | ATTGGCTTAATACAATTTAC+AGG | - | chr4_1:20913147-20913166 | Msa0539730:CDS | 25.0% |
! | TTGGCTTAATACAATTTACA+GGG | - | chr4_1:20913148-20913167 | Msa0539730:CDS | 25.0% |
! | GACATATAGGTTTAACATTA+AGG | - | chr4_1:20913519-20913538 | Msa0539730:CDS | 25.0% |
! | AAAGCAATTAACACTTAGAA+GGG | + | chr4_1:20913798-20913817 | None:intergenic | 25.0% |
! | TAAAGCAATTAACACTTAGA+AGG | + | chr4_1:20913799-20913818 | None:intergenic | 25.0% |
! | TGTCATGATCACTATATAAA+AGG | + | chr4_1:20914039-20914058 | None:intergenic | 25.0% |
!!! | CTTTCGGTGTTTTAATTTAT+TGG | + | chr4_1:20914095-20914114 | None:intergenic | 25.0% |
!!! | TTAGCTTGTAATTTCTACAA+TGG | - | chr4_1:20914132-20914151 | Msa0539730:intron | 25.0% |
!! | TCATTGATAGAACATTTTAG+TGG | - | chr4_1:20914795-20914814 | Msa0539730:intron | 25.0% |
!! | GTTTTGTGACAATATCAATA+AGG | - | chr4_1:20914839-20914858 | Msa0539730:intron | 25.0% |
CATAGTCAAACCAAAACTAA+AGG | + | chr4_1:20911832-20911851 | None:intergenic | 30.0% | |
!! | ATAAAATTGATTTGGTGGCT+GGG | + | chr4_1:20911924-20911943 | None:intergenic | 30.0% |
!! | TATAAAATTGATTTGGTGGC+TGG | + | chr4_1:20911925-20911944 | None:intergenic | 30.0% |
CTGCTAAGAATGTCAATATT+TGG | - | chr4_1:20912113-20912132 | Msa0539730:CDS | 30.0% | |
AAGAATGTCAATATTTGGTC+CGG | - | chr4_1:20912118-20912137 | Msa0539730:CDS | 30.0% | |
GAGAACTTTCTATGTAATTC+TGG | + | chr4_1:20912642-20912661 | None:intergenic | 30.0% | |
!! | ACATTCTGAAAGTATCTTGA+AGG | - | chr4_1:20912887-20912906 | Msa0539730:intron | 30.0% |
!! | CATTCTGAAAGTATCTTGAA+GGG | - | chr4_1:20912888-20912907 | Msa0539730:intron | 30.0% |
!! | ATTCTGAAAGTATCTTGAAG+GGG | - | chr4_1:20912889-20912908 | Msa0539730:intron | 30.0% |
ACAGTGTTAAGATATGATGA+TGG | + | chr4_1:20913020-20913039 | None:intergenic | 30.0% | |
AGAAAGATTAGCAAAAACCA+TGG | + | chr4_1:20913046-20913065 | None:intergenic | 30.0% | |
TAATACAATTTACAGGGACT+AGG | - | chr4_1:20913154-20913173 | Msa0539730:CDS | 30.0% | |
AATAAGATTACTTGTGACTG+AGG | + | chr4_1:20913226-20913245 | None:intergenic | 30.0% | |
CTAGAAGCTCATTCTTTAAT+TGG | - | chr4_1:20913353-20913372 | Msa0539730:CDS | 30.0% | |
! | TGGTATTTTACTATGATTGC+AGG | - | chr4_1:20913376-20913395 | Msa0539730:CDS | 30.0% |
!!! | GCTTTGATTGTTTTTTTGCT+CGG | - | chr4_1:20913490-20913509 | Msa0539730:CDS | 30.0% |
AAGAGTCCCTTTATTAGAAT+TGG | - | chr4_1:20913550-20913569 | Msa0539730:intron | 30.0% | |
ACACGACCAATTCTAATAAA+GGG | + | chr4_1:20913559-20913578 | None:intergenic | 30.0% | |
TACACGACCAATTCTAATAA+AGG | + | chr4_1:20913560-20913579 | None:intergenic | 30.0% | |
TTGTTGCAGCTATAAGAAAT+TGG | - | chr4_1:20913581-20913600 | Msa0539730:intron | 30.0% | |
GCGAAATAACTTATCAACAA+CGG | - | chr4_1:20913603-20913622 | Msa0539730:intron | 30.0% | |
! | TAACTTATCAACAACGGATT+TGG | - | chr4_1:20913609-20913628 | Msa0539730:intron | 30.0% |
TCAGAAGAGTCATAATCTTT+CGG | + | chr4_1:20914111-20914130 | None:intergenic | 30.0% | |
GCTACAAATTTCATCTTCTT+TGG | + | chr4_1:20914196-20914215 | None:intergenic | 30.0% | |
ATCACAATGCTTCAAAGAAT+TGG | - | chr4_1:20914480-20914499 | Msa0539730:intron | 30.0% | |
! | TAGTCTTTTCATCTCAACAA+AGG | + | chr4_1:20914547-20914566 | None:intergenic | 30.0% |
! | GTTCCTCAATATTTTCTGTT+TGG | - | chr4_1:20914636-20914655 | Msa0539730:CDS | 30.0% |
ACTCCAAACAGAAAATATTG+AGG | + | chr4_1:20914642-20914661 | None:intergenic | 30.0% | |
!!! | AGTTTCTGAGGTTTTTACTA+TGG | - | chr4_1:20914659-20914678 | Msa0539730:CDS | 30.0% |
! | TATTTGAGTATTGTTGGTGT+TGG | - | chr4_1:20914747-20914766 | Msa0539730:intron | 30.0% |
TGTATTATGCATGTGTTTAG+AGG | - | chr4_1:20915074-20915093 | Msa0539730:CDS | 30.0% | |
! | AAACCTGTGAAATAGGATTT+TGG | - | chr4_1:20915155-20915174 | Msa0539730:CDS | 30.0% |
ATTCCAAAATCCTATTTCAC+AGG | + | chr4_1:20915161-20915180 | None:intergenic | 30.0% | |
!! | AGAATTTTCTCAAGTTCTAG+TGG | + | chr4_1:20915184-20915203 | None:intergenic | 30.0% |
GCTCAATTAGCTATTGTTGA+TGG | - | chr4_1:20911567-20911586 | Msa0539730:three_prime_UTR | 35.0% | |
TGTACCTATGATAAACCAAG+CGG | + | chr4_1:20911649-20911668 | None:intergenic | 35.0% | |
!! | AGGTTGGTTTGATAAAGAGT+TGG | - | chr4_1:20911706-20911725 | Msa0539730:intron | 35.0% |
CGACATATCATTCATTAGCA+AGG | + | chr4_1:20911777-20911796 | None:intergenic | 35.0% | |
!!! | TTCGTTGCTGATTCTTTTCT+TGG | - | chr4_1:20912172-20912191 | Msa0539730:CDS | 35.0% |
!! | GGCGTAAAAATTCAAGTTGT+TGG | + | chr4_1:20912309-20912328 | None:intergenic | 35.0% |
! | AGGAGAAATTTTCGGTATCA+TGG | - | chr4_1:20912348-20912367 | Msa0539730:CDS | 35.0% |
! | ATTTTCGGTATCATGGAGTT+TGG | - | chr4_1:20912355-20912374 | Msa0539730:CDS | 35.0% |
!!! | TAGAGACACTTTTAGTTTGG+TGG | - | chr4_1:20912698-20912717 | Msa0539730:intron | 35.0% |
TATCTTAACACTGTCTTCCA+TGG | - | chr4_1:20913026-20913045 | Msa0539730:intron | 35.0% | |
!!! | CATGTTTTGATGTTGGTCAT+TGG | - | chr4_1:20913129-20913148 | Msa0539730:CDS | 35.0% |
GAGAACAATATGTAAGGGAA+GGG | + | chr4_1:20913204-20913223 | None:intergenic | 35.0% | |
CTGAGGAGAACAATATGTAA+GGG | + | chr4_1:20913209-20913228 | None:intergenic | 35.0% | |
ACTGAGGAGAACAATATGTA+AGG | + | chr4_1:20913210-20913229 | None:intergenic | 35.0% | |
AAACCTTGTGTTCAAGCTTT+CGG | - | chr4_1:20913289-20913308 | Msa0539730:CDS | 35.0% | |
GAAGCTCATTCTTTAATTGG+TGG | - | chr4_1:20913356-20913375 | Msa0539730:CDS | 35.0% | |
GATAACATTAGTTGGGTTCT+TGG | - | chr4_1:20913436-20913455 | Msa0539730:CDS | 35.0% | |
ATTAGTTGGGTTCTTGGATT+TGG | - | chr4_1:20913442-20913461 | Msa0539730:CDS | 35.0% | |
CGATGATCATTACAACACAA+GGG | + | chr4_1:20913471-20913490 | None:intergenic | 35.0% | |
!!! | TTGTTTTTTTGCTCGGAAGA+AGG | - | chr4_1:20913497-20913516 | Msa0539730:CDS | 35.0% |
GATTTGGAAGAAGAATGTGA+TGG | - | chr4_1:20913625-20913644 | Msa0539730:intron | 35.0% | |
! | TTTAGAGCTCAGTTAGTGTT+TGG | - | chr4_1:20913815-20913834 | Msa0539730:intron | 35.0% |
CATTATTAACGGTTCATCCT+AGG | - | chr4_1:20913921-20913940 | Msa0539730:intron | 35.0% | |
! | TGAAATTTGTAGCCTTAGTG+AGG | - | chr4_1:20914203-20914222 | Msa0539730:intron | 35.0% |
! | TACTAAGGTTGGTTCCAATT+TGG | - | chr4_1:20914244-20914263 | Msa0539730:intron | 35.0% |
! | ACTAAGGTTGGTTCCAATTT+GGG | - | chr4_1:20914245-20914264 | Msa0539730:intron | 35.0% |
TTTACATTCTTCACCAAGCA+AGG | - | chr4_1:20914306-20914325 | Msa0539730:intron | 35.0% | |
TTACATTCTTCACCAAGCAA+GGG | - | chr4_1:20914307-20914326 | Msa0539730:intron | 35.0% | |
ATGGAGAGAACAATATTTCC+TGG | - | chr4_1:20914336-20914355 | Msa0539730:intron | 35.0% | |
! | TTTATCGTTTGAAGCGAAGA+GGG | + | chr4_1:20914375-20914394 | None:intergenic | 35.0% |
!! | TTTTATCGTTTGAAGCGAAG+AGG | + | chr4_1:20914376-20914395 | None:intergenic | 35.0% |
CTTCGCTTCAAACGATAAAA+TGG | - | chr4_1:20914376-20914395 | Msa0539730:intron | 35.0% | |
CGAATATGTGCTCATAGATA+GGG | + | chr4_1:20914422-20914441 | None:intergenic | 35.0% | |
ACGAATATGTGCTCATAGAT+AGG | + | chr4_1:20914423-20914442 | None:intergenic | 35.0% | |
CTAAAGATAGCACAACAACA+CGG | - | chr4_1:20914564-20914583 | Msa0539730:CDS | 35.0% | |
CAATTGTTCCGATGAGTATA+TGG | - | chr4_1:20914607-20914626 | Msa0539730:CDS | 35.0% | |
!! | TTTTCTGTTTGGAGTTTCTG+AGG | - | chr4_1:20914647-20914666 | Msa0539730:CDS | 35.0% |
!! | TCTGAGGTTTTTACTATGGT+TGG | - | chr4_1:20914663-20914682 | Msa0539730:CDS | 35.0% |
CCATGCTTCTTAGTTCATTT+GGG | + | chr4_1:20914716-20914735 | None:intergenic | 35.0% | |
! | CCAAATGAACTAAGAAGCAT+GGG | - | chr4_1:20914714-20914733 | Msa0539730:intron | 35.0% |
! | GCACTCTATTTGAGTATTGT+TGG | - | chr4_1:20914741-20914760 | Msa0539730:intron | 35.0% |
!! | GAACATTTTAGTGGCAAAGA+TGG | - | chr4_1:20914804-20914823 | Msa0539730:intron | 35.0% |
!! | TACTTTTATTGGTTGCTTGC+TGG | - | chr4_1:20914873-20914892 | Msa0539730:intron | 35.0% |
ATTTGTATAGAGGAGCTGTT+TGG | - | chr4_1:20915048-20915067 | Msa0539730:intron | 35.0% | |
AAGCGATAAACCTGTGAAAT+AGG | - | chr4_1:20915148-20915167 | Msa0539730:CDS | 35.0% | |
TTAGGTCCGAATCTGGTTAT+TGG | - | chr4_1:20911619-20911638 | Msa0539730:three_prime_UTR | 40.0% | |
GGATCTCCAATAACCAGATT+CGG | + | chr4_1:20911628-20911647 | None:intergenic | 40.0% | |
AGATCCGCTTGGTTTATCAT+AGG | - | chr4_1:20911642-20911661 | Msa0539730:three_prime_UTR | 40.0% | |
!!! | GTTTTGTTTAGGTGTCGAAG+TGG | - | chr4_1:20912009-20912028 | Msa0539730:CDS | 40.0% |
TGTCAATATTTGGTCCGGAA+CGG | - | chr4_1:20912123-20912142 | Msa0539730:CDS | 40.0% | |
AGTACTAGATTCAAACCCCA+AGG | + | chr4_1:20912524-20912543 | None:intergenic | 40.0% | |
GATGCAAGCTAGATGCAAAT+GGG | + | chr4_1:20912927-20912946 | None:intergenic | 40.0% | |
!!! | GTGTGCTCATGTTTTGATGT+TGG | - | chr4_1:20913122-20913141 | Msa0539730:CDS | 40.0% |
GGAGAACAATATGTAAGGGA+AGG | + | chr4_1:20913205-20913224 | None:intergenic | 40.0% | |
TCACTCTATCTAGTTGCCAT+TGG | - | chr4_1:20913253-20913272 | Msa0539730:CDS | 40.0% | |
TATCTAGTTGCCATTGGACA+AGG | - | chr4_1:20913259-20913278 | Msa0539730:CDS | 40.0% | |
AACCTTGTGTTCAAGCTTTC+GGG | - | chr4_1:20913290-20913309 | Msa0539730:CDS | 40.0% | |
GCGATGATCATTACAACACA+AGG | + | chr4_1:20913472-20913491 | None:intergenic | 40.0% | |
TCATCTTCTTTGGATCCCTT+TGG | + | chr4_1:20914186-20914205 | None:intergenic | 40.0% | |
! | AATTTGTAGCCTTAGTGAGG+TGG | - | chr4_1:20914206-20914225 | Msa0539730:intron | 40.0% |
AAGAAGCAAAGGCTGTACTA+AGG | - | chr4_1:20914229-20914248 | Msa0539730:intron | 40.0% | |
TCCAATTTGGGCTTCAACTT+TGG | - | chr4_1:20914257-20914276 | Msa0539730:intron | 40.0% | |
ACCAAAGTTGAAGCCCAAAT+TGG | + | chr4_1:20914261-20914280 | None:intergenic | 40.0% | |
! | TGGGCTTCAACTTTGGTTTA+TGG | - | chr4_1:20914264-20914283 | Msa0539730:intron | 40.0% |
ATGCTTCAAAGAATTGGCAC+TGG | - | chr4_1:20914486-20914505 | Msa0539730:intron | 40.0% | |
CTCATCGGAACAATTGCATT+GGG | + | chr4_1:20914603-20914622 | None:intergenic | 40.0% | |
ACTCATCGGAACAATTGCAT+TGG | + | chr4_1:20914604-20914623 | None:intergenic | 40.0% | |
TTGTTCCGATGAGTATATGG+TGG | - | chr4_1:20914610-20914629 | Msa0539730:CDS | 40.0% | |
CCCAAATGAACTAAGAAGCA+TGG | - | chr4_1:20914713-20914732 | Msa0539730:intron | 40.0% | |
CCCATGCTTCTTAGTTCATT+TGG | + | chr4_1:20914717-20914736 | None:intergenic | 40.0% | |
GCAAAGATGGTCAAGAAAGT+TGG | - | chr4_1:20914817-20914836 | Msa0539730:intron | 40.0% | |
AATCCTTGGCTATCCTTATG+TGG | + | chr4_1:20914970-20914989 | None:intergenic | 40.0% | |
AGGTTTATCGCTTGCAAACT+TGG | + | chr4_1:20915141-20915160 | None:intergenic | 40.0% | |
AGCTTCTAACAGCACTTCGT+TGG | + | chr4_1:20911550-20911569 | None:intergenic | 45.0% | |
GGGCTGTCCTTTGTAATCAA+CGG | + | chr4_1:20911595-20911614 | None:intergenic | 45.0% | |
CATTAGCAAGGTCTTAGCAC+CGG | + | chr4_1:20911765-20911784 | None:intergenic | 45.0% | |
!! | TTGTTTAGGTGTCGAAGTGG+CGG | - | chr4_1:20912012-20912031 | Msa0539730:CDS | 45.0% |
!! | GCGGAGAGGGTATCATATTA+TGG | - | chr4_1:20912031-20912050 | Msa0539730:CDS | 45.0% |
!! | GTTGCAGTGCTTTGTTTGAG+TGG | + | chr4_1:20912091-20912110 | None:intergenic | 45.0% |
AAACGTCCGGAATTTGCACT+GGG | + | chr4_1:20912586-20912605 | None:intergenic | 45.0% | |
TAAACGTCCGGAATTTGCAC+TGG | + | chr4_1:20912587-20912606 | None:intergenic | 45.0% | |
GGATGCAAGCTAGATGCAAA+TGG | + | chr4_1:20912928-20912947 | None:intergenic | 45.0% | |
! | CATCTAGCTTGCATCCAAAC+TGG | - | chr4_1:20912932-20912951 | Msa0539730:intron | 45.0% |
! | TCGATTTGTCTCCACCAGTT+TGG | + | chr4_1:20912949-20912968 | None:intergenic | 45.0% |
GGCAACTAGATAGAGTGAGA+CGG | + | chr4_1:20913251-20913270 | None:intergenic | 45.0% | |
TAGTTGCCATTGGACAAGGT+GGG | - | chr4_1:20913263-20913282 | Msa0539730:CDS | 45.0% | |
TTTATGCCCACCTTGTCCAA+TGG | + | chr4_1:20913272-20913291 | None:intergenic | 45.0% | |
ACCTTGTGTTCAAGCTTTCG+GGG | - | chr4_1:20913291-20913310 | Msa0539730:CDS | 45.0% | |
! | CTTCTAGCTGTGTGCTCTTT+AGG | + | chr4_1:20913340-20913359 | None:intergenic | 45.0% |
TGCTCGGAAGAAGGACATAT+AGG | - | chr4_1:20913506-20913525 | Msa0539730:CDS | 45.0% | |
CTCTTTGTTGAGCTCTACCT+AGG | + | chr4_1:20913941-20913960 | None:intergenic | 45.0% | |
CAATGGTAGCTTCCTCAACA+AGG | - | chr4_1:20914149-20914168 | Msa0539730:intron | 45.0% | |
!! | AAGGCGTTGCTAACACCAAA+GGG | - | chr4_1:20914168-20914187 | Msa0539730:intron | 45.0% |
TTGCTTCTTCCACCTCACTA+AGG | + | chr4_1:20914218-20914237 | None:intergenic | 45.0% | |
TAGTGAGGTGGAAGAAGCAA+AGG | - | chr4_1:20914218-20914237 | Msa0539730:intron | 45.0% | |
AGCAAAGGCTGTACTAAGGT+TGG | - | chr4_1:20914233-20914252 | Msa0539730:intron | 45.0% | |
CCACTAGCAAGAGTTATCAC+CGG | - | chr4_1:20914444-20914463 | Msa0539730:intron | 45.0% | |
GTTATCACCGGAAAACCATC+AGG | - | chr4_1:20914456-20914475 | Msa0539730:intron | 45.0% | |
! | TGTGATGCCTGATGGTTTTC+CGG | + | chr4_1:20914466-20914485 | None:intergenic | 45.0% |
!! | TGAAGCATTGTGATGCCTGA+TGG | + | chr4_1:20914474-20914493 | None:intergenic | 45.0% |
ACCAGCCACCATATACTCAT+CGG | + | chr4_1:20914618-20914637 | None:intergenic | 45.0% | |
! | GGTGTTGGAAGCTTTCTAAG+TGG | - | chr4_1:20914762-20914781 | Msa0539730:intron | 45.0% |
! | GTTGCTTGCTGGATTAAGTG+TGG | - | chr4_1:20914884-20914903 | Msa0539730:intron | 45.0% |
CTTGCTGGATTAAGTGTGGT+GGG | - | chr4_1:20914888-20914907 | Msa0539730:intron | 45.0% | |
!! | CACAAAGGCACTACCACATA+AGG | - | chr4_1:20914954-20914973 | Msa0539730:intron | 45.0% |
CTACCACATAAGGATAGCCA+AGG | - | chr4_1:20914964-20914983 | Msa0539730:intron | 45.0% | |
GGAGCATATTGTGACGTAGA+CGG | - | chr4_1:20915095-20915114 | Msa0539730:CDS | 45.0% | |
! | GATGGCGCCGTTGATTACAA+AGG | - | chr4_1:20911585-20911604 | Msa0539730:three_prime_UTR | 50.0% |
ACCAGATTCGGACCTAACTG+CGG | + | chr4_1:20911616-20911635 | None:intergenic | 50.0% | |
CTGGTTATTGGAGATCCGCT+TGG | - | chr4_1:20911631-20911650 | Msa0539730:three_prime_UTR | 50.0% | |
! | TTTGGTGGCTGGGATGAGAA+AGG | + | chr4_1:20911914-20911933 | None:intergenic | 50.0% |
AGCACCTAAGAGAGGAAGGA+GGG | + | chr4_1:20912152-20912171 | None:intergenic | 50.0% | |
AAGCACCTAAGAGAGGAAGG+AGG | + | chr4_1:20912153-20912172 | None:intergenic | 50.0% | |
!! | CGAAAGCACCTAAGAGAGGA+AGG | + | chr4_1:20912156-20912175 | None:intergenic | 50.0% |
!! | GCAACGAAAGCACCTAAGAG+AGG | + | chr4_1:20912160-20912179 | None:intergenic | 50.0% |
CAGTTGCCAGTTGCATCCTT+GGG | - | chr4_1:20912505-20912524 | Msa0539730:CDS | 50.0% | |
AGTTGCCAGTTGCATCCTTG+GGG | - | chr4_1:20912506-20912525 | Msa0539730:CDS | 50.0% | |
TCAAACCCCAAGGATGCAAC+TGG | + | chr4_1:20912514-20912533 | None:intergenic | 50.0% | |
AATCTAGTACTCCGAGTCCG+AGG | - | chr4_1:20912533-20912552 | Msa0539730:CDS | 50.0% | |
TGTCACCATTACCTCGGACT+CGG | + | chr4_1:20912547-20912566 | None:intergenic | 50.0% | |
!! | GTCTGGTGTCACCATTACCT+CGG | + | chr4_1:20912553-20912572 | None:intergenic | 50.0% |
ATGTCGCCCAGTGCAAATTC+CGG | - | chr4_1:20912577-20912596 | Msa0539730:intron | 50.0% | |
! | CTAGCTTGCATCCAAACTGG+TGG | - | chr4_1:20912935-20912954 | Msa0539730:intron | 50.0% |
CTAGTTGCCATTGGACAAGG+TGG | - | chr4_1:20913262-20913281 | Msa0539730:CDS | 50.0% | |
TTGTGTTCAAGCTTTCGGGG+CGG | - | chr4_1:20913294-20913313 | Msa0539730:CDS | 50.0% | |
! | GTGTTAGCAACGCCTTGTTG+AGG | + | chr4_1:20914164-20914183 | None:intergenic | 50.0% |
!! | CAAGGCGTTGCTAACACCAA+AGG | - | chr4_1:20914167-20914186 | Msa0539730:intron | 50.0% |
CACCAAGCAAGGGACTTCAA+TGG | - | chr4_1:20914317-20914336 | Msa0539730:intron | 50.0% | |
CTCCATTGAAGTCCCTTGCT+TGG | + | chr4_1:20914322-20914341 | None:intergenic | 50.0% | |
! | GAGGGAGGTATGTCAAATCC+AGG | + | chr4_1:20914357-20914376 | None:intergenic | 50.0% |
! | ATCGTTTGAAGCGAAGAGGG+AGG | + | chr4_1:20914372-20914391 | None:intergenic | 50.0% |
CCGGTGATAACTCTTGCTAG+TGG | + | chr4_1:20914447-20914466 | None:intergenic | 50.0% | |
TCCGATGAGTATATGGTGGC+TGG | - | chr4_1:20914614-20914633 | Msa0539730:CDS | 50.0% | |
! | GCTTGCTGGATTAAGTGTGG+TGG | - | chr4_1:20914887-20914906 | Msa0539730:intron | 50.0% |
ACAAAGGACAGCCCGCAGTT+AGG | - | chr4_1:20911601-20911620 | Msa0539730:three_prime_UTR | 55.0% | |
CCAGATTCGGACCTAACTGC+GGG | + | chr4_1:20911615-20911634 | None:intergenic | 55.0% | |
GCGGATTCAACTTCTGCCAC+CGG | - | chr4_1:20911743-20911762 | Msa0539730:intron | 55.0% | |
! | TAGCAAGGTCTTAGCACCGG+TGG | + | chr4_1:20911762-20911781 | None:intergenic | 55.0% |
GCTTCCCTCCTTCCTCTCTT+AGG | - | chr4_1:20912145-20912164 | Msa0539730:CDS | 55.0% | |
GCAGTTGCCAGTTGCATCCT+TGG | - | chr4_1:20912504-20912523 | Msa0539730:CDS | 55.0% | |
GTACTCCGAGTCCGAGGTAA+TGG | - | chr4_1:20912539-20912558 | Msa0539730:CDS | 55.0% | |
CACTGGGCGACATGTTAGTC+TGG | + | chr4_1:20912570-20912589 | None:intergenic | 55.0% | |
GCCCCGAAAGCTTGAACACA+AGG | + | chr4_1:20913295-20913314 | None:intergenic | 55.0% | |
CCCGCAGTTAGGTCCGAATC+TGG | - | chr4_1:20911612-20911631 | Msa0539730:three_prime_UTR | 60.0% | |
AGAAGTTGAATCCGCGCGCG+GGG | + | chr4_1:20911738-20911757 | None:intergenic | 60.0% | |
CAGAAGTTGAATCCGCGCGC+GGG | + | chr4_1:20911739-20911758 | None:intergenic | 60.0% | |
GCAGAAGTTGAATCCGCGCG+CGG | + | chr4_1:20911740-20911759 | None:intergenic | 60.0% | |
!! | TAGGTGTCGAAGTGGCGGAG+AGG | - | chr4_1:20912017-20912036 | Msa0539730:CDS | 60.0% |
!! | AGGTGTCGAAGTGGCGGAGA+GGG | - | chr4_1:20912018-20912037 | Msa0539730:CDS | 60.0% |
AGGAAGGAGGGAAGCCGTTC+CGG | + | chr4_1:20912140-20912159 | None:intergenic | 60.0% | |
GTTGGTCAATACCCCGCGCG+CGG | - | chr4_1:20911724-20911743 | Msa0539730:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_1 | gene | 20911490 | 20915239 | 20911490 | ID=Msa0539730;Name=Msa0539730 |
chr4_1 | mRNA | 20911490 | 20915239 | 20911490 | ID=Msa0539730-mRNA-1;Parent=Msa0539730;Name=Msa0539730-mRNA-1;_AED=0.04;_eAED=0.04;_QI=47|1|1|1|0.75|0.6|5|225|557 |
chr4_1 | exon | 20911490 | 20911713 | 20911490 | ID=Msa0539730-mRNA-1:exon:5986;Parent=Msa0539730-mRNA-1 |
chr4_1 | exon | 20911754 | 20912571 | 20911754 | ID=Msa0539730-mRNA-1:exon:5985;Parent=Msa0539730-mRNA-1 |
chr4_1 | exon | 20913049 | 20913560 | 20913049 | ID=Msa0539730-mRNA-1:exon:5984;Parent=Msa0539730-mRNA-1 |
chr4_1 | exon | 20914492 | 20914709 | 20914492 | ID=Msa0539730-mRNA-1:exon:5983;Parent=Msa0539730-mRNA-1 |
chr4_1 | exon | 20915066 | 20915239 | 20915066 | ID=Msa0539730-mRNA-1:exon:5982;Parent=Msa0539730-mRNA-1 |
chr4_1 | five_prime_UTR | 20915193 | 20915239 | 20915193 | ID=Msa0539730-mRNA-1:five_prime_utr;Parent=Msa0539730-mRNA-1 |
chr4_1 | CDS | 20915066 | 20915192 | 20915066 | ID=Msa0539730-mRNA-1:cds;Parent=Msa0539730-mRNA-1 |
chr4_1 | CDS | 20914492 | 20914709 | 20914492 | ID=Msa0539730-mRNA-1:cds;Parent=Msa0539730-mRNA-1 |
chr4_1 | CDS | 20913049 | 20913560 | 20913049 | ID=Msa0539730-mRNA-1:cds;Parent=Msa0539730-mRNA-1 |
chr4_1 | CDS | 20911755 | 20912571 | 20911755 | ID=Msa0539730-mRNA-1:cds;Parent=Msa0539730-mRNA-1 |
chr4_1 | three_prime_UTR | 20911754 | 20911754 | 20911754 | ID=Msa0539730-mRNA-1:three_prime_utr;Parent=Msa0539730-mRNA-1 |
chr4_1 | three_prime_UTR | 20911490 | 20911713 | 20911490 | ID=Msa0539730-mRNA-1:three_prime_utr;Parent=Msa0539730-mRNA-1 |
Gene Sequence |
Protein sequence |