AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0378320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0378320 MtrunA17_Chr3g0130611 92.235 528 4 3 19 509 1 528 0.0 962
Msa0378320 MtrunA17_Chr1g0209091 40.613 522 270 6 19 503 1 519 1.28e-128 384
Msa0378320 MtrunA17_Chr1g0209111 39.608 255 140 3 32 273 12 265 2.72e-62 206
Msa0378320 MtrunA17_Chr1g0209101 39.844 256 128 3 272 503 4 257 1.98e-54 183
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0378320 AT2G01170.1 40.115 521 266 7 19 502 3 514 1.58e-118 358
Msa0378320 AT2G01170.2 39.450 436 224 6 104 502 3 435 2.11e-91 286

Find 125 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGCATCATTTCAGTATT+TGG 0.119079 3_1:+79085240 Msa0378320:CDS
TCAACTTTGATTCAGGATTT+TGG 0.145062 3_1:+79085645 Msa0378320:intron
CAACTGGTTCTCTGTACTTT+TGG 0.160818 3_1:+79084126 Msa0378320:CDS
AATTATGCACCTGTTGCTTT+AGG 0.178838 3_1:+79086489 Msa0378320:CDS
AGATGCAAGAAAATGGTTTA+AGG 0.226303 3_1:+79086548 Msa0378320:CDS
ACTACATTCACCTTCAAAAT+TGG 0.230691 3_1:-79086246 None:intergenic
GCAGCAATCTGCATTCTTCT+TGG 0.235084 3_1:+79086219 Msa0378320:CDS
ATACATAAGAATAGCCATTT+TGG 0.251599 3_1:-79084539 None:intergenic
TTCTTCCATAAGAATGAAAA+TGG 0.252336 3_1:-79086150 None:intergenic
CAGGCCCTGCAAGTCTTGTT+TGG 0.252615 3_1:+79083604 Msa0378320:CDS
TTTGCTTGATAGCATTTCTA+TGG 0.255593 3_1:+79086403 Msa0378320:CDS
ACATTGGCCTCACTGTTATA+TGG 0.257508 3_1:+79084564 Msa0378320:CDS
ATTATGCACCTGTTGCTTTA+GGG 0.273593 3_1:+79086490 Msa0378320:CDS
GGCACTTACATTCAGCATTC+AGG 0.273760 3_1:+79085278 Msa0378320:CDS
AGGCCCTGCAAGTCTTGTTT+GGG 0.292654 3_1:+79083605 Msa0378320:CDS
GGGTATTAGATGCAAGAAAA+TGG 0.313548 3_1:+79086541 Msa0378320:CDS
CACATTTAGCTGGTCCGAAA+TGG 0.325538 3_1:+79084153 Msa0378320:CDS
GCTCCAGCTGTCTCATTGTT+TGG 0.328718 3_1:-79085681 None:intergenic
TTGAAAGTATCCCATGTAAT+AGG 0.337507 3_1:-79086468 None:intergenic
GTTTCTTCACTTGGTTTGTT+GGG 0.339481 3_1:+79083643 Msa0378320:CDS
CTCTCAACAGGCACAAATAA+AGG 0.345923 3_1:+79084500 Msa0378320:CDS
GAAGAAAATGGTCCCCATTT+CGG 0.356622 3_1:-79084167 None:intergenic
TGTCACTTCCGGAACAAAAC+TGG 0.363476 3_1:-79083320 None:intergenic
TGTTTCTTCACTTGGTTTGT+TGG 0.363835 3_1:+79083642 Msa0378320:CDS
CTTGCCTTGCCCAAATAAAA+AGG 0.366855 3_1:-79086372 None:intergenic
TGAGCATCAATGTTCCTAAC+TGG 0.368203 3_1:-79086573 None:intergenic
CTATGCCCTGTCAAGGGATA+AGG 0.370330 3_1:+79086122 Msa0378320:CDS
GAGGGTACTTTGCTCCAAAA+TGG 0.371022 3_1:+79084525 Msa0378320:CDS
TCATCGATATAATTTCAATA+TGG 0.373370 3_1:+79084624 Msa0378320:CDS
GTTGCTTTAGGGGTCGGTTT+GGG 0.377735 3_1:+79086501 Msa0378320:CDS
TCTCATTGTTTGGATCATAA+AGG 0.378149 3_1:-79085671 None:intergenic
GATGCAAGAAAATGGTTTAA+GGG 0.381285 3_1:+79086549 Msa0378320:CDS
ATCACCATTCTTGCAAAGAT+TGG 0.383163 3_1:-79086324 None:intergenic
GTGAGCCAGTATTCCCTCTA+TGG 0.384775 3_1:+79085141 Msa0378320:intron
CTGCAAGTCTTGTTTGGGGA+TGG 0.389171 3_1:+79083610 Msa0378320:CDS
TTTCTTCATGGTGTTGTGCT+TGG 0.389525 3_1:+79084183 Msa0378320:CDS
TGTTGCTTTAGGGGTCGGTT+TGG 0.389839 3_1:+79086500 Msa0378320:CDS
CATCCCCAAACAAGACTTGC+AGG 0.394578 3_1:-79083609 None:intergenic
AGAAATGCTATCAAGCAAAT+TGG 0.403456 3_1:-79086399 None:intergenic
TCAACAGAACCCTTGTTACA+TGG 0.405450 3_1:+79083288 Msa0378320:CDS
AATGGTTTAAGGGGCCAGTT+AGG 0.414282 3_1:+79086559 Msa0378320:CDS
TAGTTGTTTGTTTCTTCACT+TGG 0.416921 3_1:+79083634 Msa0378320:CDS
ACATTTAGCTGGTCCGAAAT+GGG 0.416980 3_1:+79084154 Msa0378320:CDS
GTTTGGGTCTAATAATGCTT+TGG 0.418172 3_1:+79086517 Msa0378320:CDS
TTTGTAGGAACCTTGTGTTT+TGG 0.418644 3_1:-79086180 None:intergenic
GCACAACACCATGAAGAAAA+TGG 0.419284 3_1:-79084179 None:intergenic
ATTTGGATGGGCTTACATCT+TGG 0.421982 3_1:+79085257 Msa0378320:CDS
AATGATAGAATCACTGCATA+TGG 0.426309 3_1:-79085114 None:intergenic
TGGGTCTAATAATGCTTTGG+TGG 0.434711 3_1:+79086520 Msa0378320:CDS
CAACTCTTTATCCTATTACA+TGG 0.435931 3_1:+79086457 Msa0378320:CDS
GATTCAATCTAACAGACAAC+TGG 0.436647 3_1:+79084110 Msa0378320:intron
CAGAGCCATACAGCATTTGT+AGG 0.439578 3_1:-79086195 None:intergenic
ATAACTTCAATAGCCACAAT+TGG 0.440996 3_1:+79086279 Msa0378320:CDS
ACTGGAATCACACCTCTGTA+TGG 0.444050 3_1:+79083564 Msa0378320:CDS
GCAAGAACTAAGAAGAGAAA+TGG 0.444571 3_1:+79083396 Msa0378320:CDS
CCAGGCTTGAAGTTCTTCTC+AGG 0.445201 3_1:-79086348 None:intergenic
GAATTAGCATCTGATACAAC+AGG 0.449362 3_1:+79085078 Msa0378320:CDS
GCACCTGTTGCTTTAGGGGT+CGG 0.452904 3_1:+79086495 Msa0378320:CDS
TGCAAGTCTTGTTTGGGGAT+GGG 0.454102 3_1:+79083611 Msa0378320:CDS
TAGGATAAAGAGTTGGCAAC+AGG 0.454242 3_1:-79086449 None:intergenic
AGTATAATCCTACTCTCAAC+AGG 0.455880 3_1:+79084488 Msa0378320:CDS
CATTGGCCTCACTGTTATAT+GGG 0.456388 3_1:+79084565 Msa0378320:CDS
AGTTCCAATCTTTGCAAGAA+TGG 0.458612 3_1:+79086320 Msa0378320:CDS
GCATCATTTCAGTATTTGGA+TGG 0.461596 3_1:+79085244 Msa0378320:CDS
GGAAGATATCACAATTCTGC+TGG 0.469478 3_1:+79085741 Msa0378320:CDS
AAACCGACCCCTAAAGCAAC+AGG 0.470449 3_1:-79086498 None:intergenic
TTTCTGTGTCAGGTTATTGG+TGG 0.473306 3_1:+79084982 Msa0378320:intron
GAACTCCCTTATCCCTTGAC+AGG 0.479526 3_1:-79086128 None:intergenic
AATACTACCAAGTATTGCTA+TGG 0.480039 3_1:-79085220 None:intergenic
GCCACAATTGGATGGGTTGG+TGG 0.481482 3_1:+79086291 Msa0378320:CDS
GGGTCTAATAATGCTTTGGT+GGG 0.484279 3_1:+79086521 Msa0378320:CDS
TATAATTTCAATATGGTGGC+AGG 0.485261 3_1:+79084631 Msa0378320:CDS
TATGCCCTGTCAAGGGATAA+GGG 0.485928 3_1:+79086123 Msa0378320:CDS
ATAGCAATACTTGGTAGTAT+TGG 0.486608 3_1:+79085222 Msa0378320:CDS
TTATGCACCTGTTGCTTTAG+GGG 0.491456 3_1:+79086491 Msa0378320:CDS
CTTCAATAGCCACAATTGGA+TGG 0.494941 3_1:+79086283 Msa0378320:CDS
ATGGTTGGAAAGGCGTATGC+AGG 0.497048 3_1:+79084449 Msa0378320:intron
CATCATTTCAGTATTTGGAT+GGG 0.498028 3_1:+79085245 Msa0378320:CDS
CAGAATTGTGATATCTTCCA+TGG 0.503563 3_1:-79085737 None:intergenic
TATTGAAATTATATCGATGA+AGG 0.507414 3_1:-79084621 None:intergenic
AACTCTTTATCCTATTACAT+GGG 0.509862 3_1:+79086458 Msa0378320:CDS
TATTTGTGCCTGTTGAGAGT+AGG 0.510878 3_1:-79084496 None:intergenic
CCTGAGAAGAACTTCAAGCC+TGG 0.511772 3_1:+79086348 Msa0378320:CDS
AATATGAATTCATCCAATAG+TGG 0.513484 3_1:+79081769 None:intergenic
GGTTCTAGCCTTCTGTATGC+AGG 0.514787 3_1:+79083585 Msa0378320:CDS
GATAGTGATACTGTTACCTC+TGG 0.519304 3_1:+79085011 Msa0378320:CDS
TTCAGGTCTATGCCCTGTCA+AGG 0.519937 3_1:+79086115 Msa0378320:intron
ATAGCCACAATTGGATGGGT+TGG 0.526969 3_1:+79086288 Msa0378320:CDS
GTTTCAGTCCCCATGTAACA+AGG 0.526977 3_1:-79083298 None:intergenic
GAGAAGAGACTAAATGAGCT+TGG 0.534894 3_1:+79083367 Msa0378320:CDS
AGGTTCCTACAAATGCTGTA+TGG 0.535547 3_1:+79086190 Msa0378320:CDS
GATCCAAACAATGAGACAGC+TGG 0.539193 3_1:+79085678 Msa0378320:CDS
TCGATATAATTTCAATATGG+TGG 0.540538 3_1:+79084627 Msa0378320:CDS
TTCAATAGCCACAATTGGAT+GGG 0.541163 3_1:+79086284 Msa0378320:CDS
AGTGACAGAAAACATAGCTA+TGG 0.548979 3_1:+79083336 Msa0378320:CDS
ATGCAAGAAAATGGTTTAAG+GGG 0.550033 3_1:+79086550 Msa0378320:CDS
CTGCAGCATCATATCCATAG+AGG 0.550623 3_1:-79085155 None:intergenic
AATGGACCCATAGCAATACT+TGG 0.552434 3_1:+79085213 Msa0378320:CDS
ATACTCTATGATGCATTCCA+TGG 0.552503 3_1:+79085720 Msa0378320:CDS
ACTAAAGGTGCAGACAAGAA+TGG 0.554611 3_1:+79085195 Msa0378320:CDS
ACAGGCACAAATAAAGGCGG+AGG 0.555550 3_1:+79084506 Msa0378320:CDS
CAACAGAACCCTTGTTACAT+GGG 0.555798 3_1:+79083289 Msa0378320:CDS
CTATTCTTATGTATGTACAT+TGG 0.562884 3_1:+79084548 Msa0378320:CDS
TTGGTTTGTTGGGATTGCAA+TGG 0.572687 3_1:+79083653 Msa0378320:CDS
CATGTAATAGGATAAAGAGT+TGG 0.573094 3_1:-79086456 None:intergenic
ACCACCAACCCATCCAATTG+TGG 0.576324 3_1:-79086292 None:intergenic
TCAGGTCTATGCCCTGTCAA+GGG 0.590519 3_1:+79086116 Msa0378320:intron
GCATCATAGAGTATTTGTGC+TGG 0.596421 3_1:-79085711 None:intergenic
CATTTAACTGAAGAAACTAA+AGG 0.601435 3_1:+79085180 Msa0378320:CDS
GGCCCTGCAAGTCTTGTTTG+GGG 0.606319 3_1:+79083606 Msa0378320:CDS
ATACTACCAAGTATTGCTAT+GGG 0.606656 3_1:-79085219 None:intergenic
TTGCAGGGCCTGCATACAGA+AGG 0.612492 3_1:-79083593 None:intergenic
CATTTAGCTGGTCCGAAATG+GGG 0.626758 3_1:+79084155 Msa0378320:CDS
TGCAGCATCATATCCATAGA+GGG 0.645076 3_1:-79085154 None:intergenic
AGTGATACTGTTACCTCTGG+TGG 0.645216 3_1:+79085014 Msa0378320:CDS
ATCCCCAAACAAGACTTGCA+GGG 0.654831 3_1:-79083608 None:intergenic
AACAGAACCCTTGTTACATG+GGG 0.656415 3_1:+79083290 Msa0378320:CDS
TTTCAGTCCCCATGTAACAA+GGG 0.659735 3_1:-79083297 None:intergenic
TGTTTAGTTAGTGCCACCAG+AGG 0.660806 3_1:-79085027 None:intergenic
CAGGCACAAATAAAGGCGGA+GGG 0.669164 3_1:+79084507 Msa0378320:CDS
AACTCCCTTATCCCTTGACA+GGG 0.675866 3_1:-79086127 None:intergenic
GAAACTGCATCCAAAACACA+AGG 0.696453 3_1:+79086170 Msa0378320:CDS
TCAACAGGCACAAATAAAGG+CGG 0.709488 3_1:+79084503 Msa0378320:CDS
ATGCTGCCCATATAACAGTG+AGG 0.755036 3_1:-79084571 None:intergenic
AGAAGGCTAGAACCATACAG+AGG 0.767417 3_1:-79083576 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTTTTGTATATTAGAT+TGG - chr3_1:79082585-79082604 None:intergenic 10.0%
!!! TCTTTATTTTATAATTGAAA+AGG - chr3_1:79083988-79084007 None:intergenic 10.0%
!!! TCTACAATTAAATTGTATTT+TGG - chr3_1:79082312-79082331 None:intergenic 15.0%
!! ATATTTAATTAGAAAAGTCA+CGG + chr3_1:79082532-79082551 Msa0378320:intron 15.0%
!! AAATTTCAAAATCGAAATTT+AGG - chr3_1:79083940-79083959 None:intergenic 15.0%
!! TTATTCACTTAAATATCATA+CGG + chr3_1:79084706-79084725 Msa0378320:intron 15.0%
!! CAAAAAAATTCAAATATGTT+AGG - chr3_1:79085576-79085595 None:intergenic 15.0%
!! AATTTCTTTCTTAGTTTCAA+AGG - chr3_1:79082448-79082467 None:intergenic 20.0%
!! TAATGTGTTCTTATTGTTAA+AGG + chr3_1:79082916-79082935 Msa0378320:intron 20.0%
!! AATATTTGAATAGTTATCTG+AGG - chr3_1:79083082-79083101 None:intergenic 20.0%
!! ATATGTAGACAGTAAATATT+TGG - chr3_1:79083908-79083927 None:intergenic 20.0%
!! TATTGAAATTATATCGATGA+AGG - chr3_1:79084624-79084643 None:intergenic 20.0%
!! TCATCGATATAATTTCAATA+TGG + chr3_1:79084624-79084643 Msa0378320:CDS 20.0%
!!! TAATTTGCCCAATTTTTATT+AGG + chr3_1:79084943-79084962 Msa0378320:intron 20.0%
!! GTTACTTCCTAATAAAAATT+GGG - chr3_1:79084953-79084972 None:intergenic 20.0%
!!! TGTTACTTCCTAATAAAAAT+TGG - chr3_1:79084954-79084973 None:intergenic 20.0%
!!! GACTTAAACTAAACAATTTT+TGG + chr3_1:79085595-79085614 Msa0378320:intron 20.0%
! AAAGGTCACAAATTTCTATA+CGG + chr3_1:79081796-79081815 Msa0378320:intron 25.0%
!!! AAATTGTATTTTGGACCTTT+TGG - chr3_1:79082303-79082322 None:intergenic 25.0%
! TCATTAATGAAATCACAACA+TGG + chr3_1:79082422-79082441 Msa0378320:intron 25.0%
! TTAAAAATGTGTCAAAGTGA+AGG + chr3_1:79082631-79082650 Msa0378320:intron 25.0%
! GACACATAATAAGATGAAAA+CGG - chr3_1:79082724-79082743 None:intergenic 25.0%
! ATTACTATATGATAGAGTGA+TGG - chr3_1:79082821-79082840 None:intergenic 25.0%
!! TGAGAAATTTTCTATCAAGA+TGG - chr3_1:79083436-79083455 None:intergenic 25.0%
!! TGAAATATGTTCATCTTTTC+CGG + chr3_1:79083677-79083696 Msa0378320:CDS 25.0%
!! TCAAGAATAGCTTTTCATTT+AGG + chr3_1:79084009-79084028 Msa0378320:intron 25.0%
!! CAAGAATAGCTTTTCATTTA+GGG + chr3_1:79084010-79084029 Msa0378320:intron 25.0%
!! AAGTAACTCATGATTTTTCA+TGG + chr3_1:79084430-79084449 Msa0378320:intron 25.0%
!! ATACATAAGAATAGCCATTT+TGG - chr3_1:79084542-79084561 None:intergenic 25.0%
! CTATTCTTATGTATGTACAT+TGG + chr3_1:79084548-79084567 Msa0378320:CDS 25.0%
! TCGATATAATTTCAATATGG+TGG + chr3_1:79084627-79084646 Msa0378320:CDS 25.0%
! AACAATATTGAGCAATCTTA+TGG - chr3_1:79084687-79084706 None:intergenic 25.0%
!!! GTACATCTTAGAACATTTTT+TGG - chr3_1:79084919-79084938 None:intergenic 25.0%
! CATTTAACTGAAGAAACTAA+AGG + chr3_1:79085180-79085199 Msa0378320:CDS 25.0%
! ATATCTTGAAGATATAGTCA+AGG + chr3_1:79085334-79085353 Msa0378320:intron 25.0%
!!! ATGCTTCAAAACTTATTTTC+AGG - chr3_1:79085395-79085414 None:intergenic 25.0%
! TTCCTAAAAAAAAAACAGCA+AGG - chr3_1:79085508-79085527 None:intergenic 25.0%
!!! GTTTTAATCATAAAGACATG+TGG + chr3_1:79086045-79086064 Msa0378320:intron 25.0%
!! TCTCAAATGAAACAATTTTC+AGG + chr3_1:79086098-79086117 Msa0378320:intron 25.0%
! TTCTTCCATAAGAATGAAAA+TGG - chr3_1:79086153-79086172 None:intergenic 25.0%
! AACTCTTTATCCTATTACAT+GGG + chr3_1:79086458-79086477 Msa0378320:CDS 25.0%
TCATCCAATAGTGGTTAAAA+AGG + chr3_1:79081778-79081797 Msa0378320:intron 30.0%
AAGGTCACAAATTTCTATAC+GGG + chr3_1:79081797-79081816 Msa0378320:intron 30.0%
TAAATACATGGTGTGTATCT+TGG - chr3_1:79081980-79081999 None:intergenic 30.0%
TCTCTTCTGACATAAATACA+TGG - chr3_1:79081992-79082011 None:intergenic 30.0%
GTATTTATGTCAGAAGAGAT+AGG + chr3_1:79081993-79082012 Msa0378320:intron 30.0%
AGAAGAATGCACAACATAAA+TGG + chr3_1:79082095-79082114 Msa0378320:intron 30.0%
! CTATTATTCATGTTTGGCTT+TGG - chr3_1:79082147-79082166 None:intergenic 30.0%
AGGCAACTATTATTCATGTT+TGG - chr3_1:79082153-79082172 None:intergenic 30.0%
AACATGAATAATAGTTGCCT+AGG + chr3_1:79082153-79082172 Msa0378320:intron 30.0%
AACTGGTTGAGAATATATCA+GGG - chr3_1:79082194-79082213 None:intergenic 30.0%
TAACTGGTTGAGAATATATC+AGG - chr3_1:79082195-79082214 None:intergenic 30.0%
! ATTTTGGATGTTCTGATAAC+TGG - chr3_1:79082211-79082230 None:intergenic 30.0%
!! AAGATAGTTCTGATAGAAAC+CGG + chr3_1:79082275-79082294 Msa0378320:intron 30.0%
GTGATTTCATTAATGAACCA+CGG - chr3_1:79082418-79082437 None:intergenic 30.0%
ATTAAGCGACAAAAATGAGT+TGG + chr3_1:79082869-79082888 Msa0378320:intron 30.0%
CTACTATATGTTTCAGTTGA+AGG - chr3_1:79083145-79083164 None:intergenic 30.0%
CTTCAACTGAAACATATAGT+AGG + chr3_1:79083143-79083162 Msa0378320:intron 30.0%
! TAGTTGTTTGTTTCTTCACT+TGG + chr3_1:79083634-79083653 Msa0378320:CDS 30.0%
! ATAGAAGTAGTACTTTTGTC+CGG + chr3_1:79083744-79083763 Msa0378320:intron 30.0%
CAGATAGTAGTAGTACTTTA+AGG + chr3_1:79083841-79083860 Msa0378320:intron 30.0%
!! AGCAGGAACAAAGTATTTTT+AGG - chr3_1:79084048-79084067 None:intergenic 30.0%
CTGTTAGATTGAATCAAAAG+TGG - chr3_1:79084105-79084124 None:intergenic 30.0%
! TAGTTTTTGCAAAATCTCGA+TGG + chr3_1:79084346-79084365 Msa0378320:intron 30.0%
! AACTCATGATTTTTCATGGT+TGG + chr3_1:79084434-79084453 Msa0378320:intron 30.0%
! ATGATTTTTCATGGTTGGAA+AGG + chr3_1:79084439-79084458 Msa0378320:intron 30.0%
TATAATTTCAATATGGTGGC+AGG + chr3_1:79084631-79084650 Msa0378320:CDS 30.0%
ACTTAAATATCATACGGTCA+CGG + chr3_1:79084712-79084731 Msa0378320:intron 30.0%
AACTCATAATATAAGTCGTC+TGG - chr3_1:79084769-79084788 None:intergenic 30.0%
! AATTTTCTGTGTCAGGTTAT+TGG + chr3_1:79084979-79084998 Msa0378320:intron 30.0%
AATGATAGAATCACTGCATA+TGG - chr3_1:79085117-79085136 None:intergenic 30.0%
! ATACTACCAAGTATTGCTAT+GGG - chr3_1:79085222-79085241 None:intergenic 30.0%
! AATACTACCAAGTATTGCTA+TGG - chr3_1:79085223-79085242 None:intergenic 30.0%
! ATAGCAATACTTGGTAGTAT+TGG + chr3_1:79085222-79085241 Msa0378320:CDS 30.0%
ATTGGCATCATTTCAGTATT+TGG + chr3_1:79085240-79085259 Msa0378320:CDS 30.0%
CATCATTTCAGTATTTGGAT+GGG + chr3_1:79085245-79085264 Msa0378320:CDS 30.0%
TTGATACCATCTTAGAACTT+TGG - chr3_1:79085483-79085502 None:intergenic 30.0%
!!! AGCCTTGCTGTTTTTTTTTT+AGG + chr3_1:79085503-79085522 Msa0378320:intron 30.0%
!!! ACTAAACAATTTTTGGCAGA+CGG + chr3_1:79085602-79085621 Msa0378320:intron 30.0%
CCTGAATCAAAGTTGAAAAA+TGG - chr3_1:79085641-79085660 None:intergenic 30.0%
!! CCATTTTTCAACTTTGATTC+AGG + chr3_1:79085638-79085657 Msa0378320:intron 30.0%
! TCAACTTTGATTCAGGATTT+TGG + chr3_1:79085645-79085664 Msa0378320:intron 30.0%
TCTCATTGTTTGGATCATAA+AGG - chr3_1:79085674-79085693 None:intergenic 30.0%
TAGTTCTCCTGTTTATCATT+TGG + chr3_1:79085769-79085788 Msa0378320:intron 30.0%
AGTTCTCCTGTTTATCATTT+GGG + chr3_1:79085770-79085789 Msa0378320:intron 30.0%
! GAGTTCCATTTTCATTCTTA+TGG + chr3_1:79086145-79086164 Msa0378320:CDS 30.0%
ACTACATTCACCTTCAAAAT+TGG - chr3_1:79086249-79086268 None:intergenic 30.0%
ATAACTTCAATAGCCACAAT+TGG + chr3_1:79086279-79086298 Msa0378320:CDS 30.0%
AGAAATGCTATCAAGCAAAT+TGG - chr3_1:79086402-79086421 None:intergenic 30.0%
! TTTGCTTGATAGCATTTCTA+TGG + chr3_1:79086403-79086422 Msa0378320:CDS 30.0%
CATGTAATAGGATAAAGAGT+TGG - chr3_1:79086459-79086478 None:intergenic 30.0%
CAACTCTTTATCCTATTACA+TGG + chr3_1:79086457-79086476 Msa0378320:CDS 30.0%
!! TTGAAAGTATCCCATGTAAT+AGG - chr3_1:79086471-79086490 None:intergenic 30.0%
AGATGCAAGAAAATGGTTTA+AGG + chr3_1:79086548-79086567 Msa0378320:CDS 30.0%
GATGCAAGAAAATGGTTTAA+GGG + chr3_1:79086549-79086568 Msa0378320:CDS 30.0%
ATGCAAGAAAATGGTTTAAG+GGG + chr3_1:79086550-79086569 Msa0378320:CDS 30.0%
! GTGACCTTTTTAACCACTAT+TGG - chr3_1:79081785-79081804 None:intergenic 35.0%
AGGTCACAAATTTCTATACG+GGG + chr3_1:79081798-79081817 Msa0378320:intron 35.0%
ATAAGCCAAATCTTACAAGC+CGG - chr3_1:79081837-79081856 None:intergenic 35.0%
CTTATCTTAAGTGAACAGAG+AGG + chr3_1:79081852-79081871 Msa0378320:intron 35.0%
TGAATAATAGTTGCCTAGGA+AGG + chr3_1:79082157-79082176 Msa0378320:intron 35.0%
TTGAGAATATATCAGGGTAC+AGG - chr3_1:79082188-79082207 None:intergenic 35.0%
TCAGAACATCCAAAATGCAA+CGG + chr3_1:79082215-79082234 Msa0378320:intron 35.0%
!! TATTTTGGACCTTTTGGTAC+CGG - chr3_1:79082297-79082316 None:intergenic 35.0%
TACGCTATGACCTATAATGA+TGG + chr3_1:79082380-79082399 Msa0378320:intron 35.0%
! GACCTATAATGATGGAGAAA+TGG + chr3_1:79082388-79082407 Msa0378320:intron 35.0%
GACCATTTCTCCATCATTAT+AGG - chr3_1:79082393-79082412 None:intergenic 35.0%
TCTATCTGACCTACTATCAT+GGG - chr3_1:79082558-79082577 None:intergenic 35.0%
TTCTATCTGACCTACTATCA+TGG - chr3_1:79082559-79082578 None:intergenic 35.0%
AACGGAATTTAACAAACCTG+CGG - chr3_1:79082706-79082725 None:intergenic 35.0%
TTGGCAAATTCAGTTGAATG+TGG - chr3_1:79082746-79082765 None:intergenic 35.0%
! TGTGCTTGACTTTTCTTTGT+TGG - chr3_1:79082765-79082784 None:intergenic 35.0%
AAGTGAAACCAAAGCAGAAA+AGG + chr3_1:79082964-79082983 Msa0378320:intron 35.0%
TCAGTTGAAGGATTCAAACT+TGG - chr3_1:79083133-79083152 None:intergenic 35.0%
AGTGACAGAAAACATAGCTA+TGG + chr3_1:79083336-79083355 Msa0378320:CDS 35.0%
GCAAGAACTAAGAAGAGAAA+TGG + chr3_1:79083396-79083415 Msa0378320:CDS 35.0%
!! TGTTTCTTCACTTGGTTTGT+TGG + chr3_1:79083642-79083661 Msa0378320:CDS 35.0%
!! GTTTCTTCACTTGGTTTGTT+GGG + chr3_1:79083643-79083662 Msa0378320:CDS 35.0%
CATGCATAAAAGAGACAAAC+CGG - chr3_1:79083699-79083718 None:intergenic 35.0%
GGTCAAACTTTGGATTATCA+GGG - chr3_1:79083785-79083804 None:intergenic 35.0%
TGGTCAAACTTTGGATTATC+AGG - chr3_1:79083786-79083805 None:intergenic 35.0%
TAATCCAAAGTTTGACCATG+AGG + chr3_1:79083788-79083807 Msa0378320:intron 35.0%
TTTACCTCATGGTCAAACTT+TGG - chr3_1:79083795-79083814 None:intergenic 35.0%
GATTCAATCTAACAGACAAC+TGG + chr3_1:79084110-79084129 Msa0378320:intron 35.0%
!! AACTGGTTCTCTGTACTTTT+GGG + chr3_1:79084127-79084146 Msa0378320:CDS 35.0%
GGTTAAACTTCGTGTATGTT+TGG + chr3_1:79084258-79084277 Msa0378320:intron 35.0%
AACTTCGTGTATGTTTGGAT+TGG + chr3_1:79084263-79084282 Msa0378320:intron 35.0%
! GGTGGGTTTGATAAAAATCA+CGG + chr3_1:79084287-79084306 Msa0378320:intron 35.0%
GAAAACACTGAGTACATGTT+TGG - chr3_1:79084392-79084411 None:intergenic 35.0%
AGTATAATCCTACTCTCAAC+AGG + chr3_1:79084488-79084507 Msa0378320:CDS 35.0%
TAATATAAGTCGTCTGGTCT+TGG - chr3_1:79084763-79084782 None:intergenic 35.0%
GAATTAGCATCTGATACAAC+AGG + chr3_1:79085078-79085097 Msa0378320:CDS 35.0%
GCATCATTTCAGTATTTGGA+TGG + chr3_1:79085244-79085263 Msa0378320:CDS 35.0%
ACGAACACTTAGTCTCATAA+TGG + chr3_1:79085358-79085377 Msa0378320:intron 35.0%
TACCATCTTAGAACTTTGGT+TGG - chr3_1:79085479-79085498 None:intergenic 35.0%
!!! CTAAACAATTTTTGGCAGAC+GGG + chr3_1:79085603-79085622 Msa0378320:intron 35.0%
ATACTCTATGATGCATTCCA+TGG + chr3_1:79085720-79085739 Msa0378320:CDS 35.0%
CAGAATTGTGATATCTTCCA+TGG - chr3_1:79085740-79085759 None:intergenic 35.0%
GTTCTCCTGTTTATCATTTG+GGG + chr3_1:79085771-79085790 Msa0378320:intron 35.0%
ATGAACCCCAAATGATAAAC+AGG - chr3_1:79085779-79085798 None:intergenic 35.0%
! ATTTGGGGTTCATTCTTCTT+TGG + chr3_1:79085786-79085805 Msa0378320:intron 35.0%
TGGTAAGTACTAAACCTGTT+TGG + chr3_1:79085841-79085860 Msa0378320:intron 35.0%
GGTAAGTACTAAACCTGTTT+GGG + chr3_1:79085842-79085861 Msa0378320:intron 35.0%
! GTTTTGCAACTCGAATGAAT+CGG - chr3_1:79085868-79085887 None:intergenic 35.0%
!! CTTATTTCTATAAGCTCTCC+AGG + chr3_1:79085932-79085951 Msa0378320:intron 35.0%
! TCTGTTTTCATAAGCTATCC+TGG - chr3_1:79085953-79085972 None:intergenic 35.0%
! TTTGTAGGAACCTTGTGTTT+TGG - chr3_1:79086183-79086202 None:intergenic 35.0%
! TCTTGGTCTACCAATTTTGA+AGG + chr3_1:79086236-79086255 Msa0378320:CDS 35.0%
TTCAATAGCCACAATTGGAT+GGG + chr3_1:79086284-79086303 Msa0378320:CDS 35.0%
AGTTCCAATCTTTGCAAGAA+TGG + chr3_1:79086320-79086339 Msa0378320:CDS 35.0%
ATCACCATTCTTGCAAAGAT+TGG - chr3_1:79086327-79086346 None:intergenic 35.0%
!! AAGCCTGGACCTTTTTATTT+GGG + chr3_1:79086363-79086382 Msa0378320:CDS 35.0%
!! AATTATGCACCTGTTGCTTT+AGG + chr3_1:79086489-79086508 Msa0378320:CDS 35.0%
!! ATTATGCACCTGTTGCTTTA+GGG + chr3_1:79086490-79086509 Msa0378320:CDS 35.0%
GTTTGGGTCTAATAATGCTT+TGG + chr3_1:79086517-79086536 Msa0378320:CDS 35.0%
GGGTATTAGATGCAAGAAAA+TGG + chr3_1:79086541-79086560 Msa0378320:CDS 35.0%
ACATAAATGGCCACCATAGT+TGG + chr3_1:79082108-79082127 Msa0378320:intron 40.0%
TGATAGAAACCGGTACCAAA+AGG + chr3_1:79082285-79082304 Msa0378320:intron 40.0%
GAGGATATCTTTGACATGTC+AGG - chr3_1:79082673-79082692 None:intergenic 40.0%
! TACTTGCTCCTTTTCTGCTT+TGG - chr3_1:79082975-79082994 None:intergenic 40.0%
!! ATCTGAGGCAGTATTTTCTC+AGG - chr3_1:79083067-79083086 None:intergenic 40.0%
TCAACAGAACCCTTGTTACA+TGG + chr3_1:79083288-79083307 Msa0378320:CDS 40.0%
CAACAGAACCCTTGTTACAT+GGG + chr3_1:79083289-79083308 Msa0378320:CDS 40.0%
AACAGAACCCTTGTTACATG+GGG + chr3_1:79083290-79083309 Msa0378320:CDS 40.0%
TTTCAGTCCCCATGTAACAA+GGG - chr3_1:79083300-79083319 None:intergenic 40.0%
!!! GACTGAAACCAGTTTTGTTC+CGG + chr3_1:79083312-79083331 Msa0378320:CDS 40.0%
!! GCTATGTTTTCTGTCACTTC+CGG - chr3_1:79083334-79083353 None:intergenic 40.0%
GAGAAGAGACTAAATGAGCT+TGG + chr3_1:79083367-79083386 Msa0378320:CDS 40.0%
! TCAACAATGACGCTTTTCAC+TGG + chr3_1:79083546-79083565 Msa0378320:CDS 40.0%
!! TTGGTTTGTTGGGATTGCAA+TGG + chr3_1:79083653-79083672 Msa0378320:CDS 40.0%
ATTATCAGGGTTCCATTCTC+AGG - chr3_1:79083772-79083791 None:intergenic 40.0%
TAGAACAGTCGTTTACCTCA+TGG - chr3_1:79083806-79083825 None:intergenic 40.0%
!! CAACTGGTTCTCTGTACTTT+TGG + chr3_1:79084126-79084145 Msa0378320:CDS 40.0%
ACATTTAGCTGGTCCGAAAT+GGG + chr3_1:79084154-79084173 Msa0378320:CDS 40.0%
GAAGAAAATGGTCCCCATTT+CGG - chr3_1:79084170-79084189 None:intergenic 40.0%
! AATGGGGACCATTTTCTTCA+TGG + chr3_1:79084171-79084190 Msa0378320:CDS 40.0%
GCACAACACCATGAAGAAAA+TGG - chr3_1:79084182-79084201 None:intergenic 40.0%
!! TTTCTTCATGGTGTTGTGCT+TGG + chr3_1:79084183-79084202 Msa0378320:CDS 40.0%
!! GTAGGTCTTATTGCTGGAAT+CGG + chr3_1:79084215-79084234 Msa0378320:intron 40.0%
! TTCGTGTATGTTTGGATTGG+TGG + chr3_1:79084266-79084285 Msa0378320:intron 40.0%
!! TGTATGTTTGGATTGGTGGT+GGG + chr3_1:79084270-79084289 Msa0378320:intron 40.0%
GGGTTTGATAAAAATCACGG+TGG + chr3_1:79084290-79084309 Msa0378320:intron 40.0%
GCAAAATCTCGATGGTTCAT+CGG + chr3_1:79084354-79084373 Msa0378320:intron 40.0%
CAAAATCTCGATGGTTCATC+GGG + chr3_1:79084355-79084374 Msa0378320:intron 40.0%
TATTTGTGCCTGTTGAGAGT+AGG - chr3_1:79084499-79084518 None:intergenic 40.0%
CTCTCAACAGGCACAAATAA+AGG + chr3_1:79084500-79084519 Msa0378320:CDS 40.0%
TCAACAGGCACAAATAAAGG+CGG + chr3_1:79084503-79084522 Msa0378320:CDS 40.0%
! ACATTGGCCTCACTGTTATA+TGG + chr3_1:79084564-79084583 Msa0378320:CDS 40.0%
! CATTGGCCTCACTGTTATAT+GGG + chr3_1:79084565-79084584 Msa0378320:CDS 40.0%
GAGCAATCTTATGGCAGTTA+TGG - chr3_1:79084678-79084697 None:intergenic 40.0%
GGGAGCAATTAGATAAGGAT+CGG - chr3_1:79084833-79084852 None:intergenic 40.0%
CAAGTGGGAGCAATTAGATA+AGG - chr3_1:79084838-79084857 None:intergenic 40.0%
! CACACTCAATTTTCTGTGTC+AGG + chr3_1:79084972-79084991 Msa0378320:intron 40.0%
TTTCTGTGTCAGGTTATTGG+TGG + chr3_1:79084982-79085001 Msa0378320:intron 40.0%
GATAGTGATACTGTTACCTC+TGG + chr3_1:79085011-79085030 Msa0378320:CDS 40.0%
CATATCCATAGAGGGAATAC+TGG - chr3_1:79085149-79085168 None:intergenic 40.0%
TGCAGCATCATATCCATAGA+GGG - chr3_1:79085157-79085176 None:intergenic 40.0%
! ACTAAAGGTGCAGACAAGAA+TGG + chr3_1:79085195-79085214 Msa0378320:CDS 40.0%
AATGGACCCATAGCAATACT+TGG + chr3_1:79085213-79085232 Msa0378320:CDS 40.0%
! ATTTGGATGGGCTTACATCT+TGG + chr3_1:79085257-79085276 Msa0378320:CDS 40.0%
!! TAGAACTTTGGTTGGCCTAA+TGG - chr3_1:79085471-79085490 None:intergenic 40.0%
! GCATCATAGAGTATTTGTGC+TGG - chr3_1:79085714-79085733 None:intergenic 40.0%
GGAAGATATCACAATTCTGC+TGG + chr3_1:79085741-79085760 Msa0378320:CDS 40.0%
TTTAGTACTTACCACTCTGG+CGG - chr3_1:79085835-79085854 None:intergenic 40.0%
AGGTTTAGTACTTACCACTC+TGG - chr3_1:79085838-79085857 None:intergenic 40.0%
AAAATGCCTCCTAACTAGTG+TGG + chr3_1:79086071-79086090 Msa0378320:intron 40.0%
TGAGATACACCACACTAGTT+AGG - chr3_1:79086083-79086102 None:intergenic 40.0%
GAAACTGCATCCAAAACACA+AGG + chr3_1:79086170-79086189 Msa0378320:CDS 40.0%
AGGTTCCTACAAATGCTGTA+TGG + chr3_1:79086190-79086209 Msa0378320:CDS 40.0%
CTTCAATAGCCACAATTGGA+TGG + chr3_1:79086283-79086302 Msa0378320:CDS 40.0%
! CAAGCCTGGACCTTTTTATT+TGG + chr3_1:79086362-79086381 Msa0378320:CDS 40.0%
TTGCCCAAATAAAAAGGTCC+AGG - chr3_1:79086369-79086388 None:intergenic 40.0%
!! TGGACCTTTTTATTTGGGCA+AGG + chr3_1:79086368-79086387 Msa0378320:CDS 40.0%
CTTGCCTTGCCCAAATAAAA+AGG - chr3_1:79086375-79086394 None:intergenic 40.0%
TAGGATAAAGAGTTGGCAAC+AGG - chr3_1:79086452-79086471 None:intergenic 40.0%
!! TTATGCACCTGTTGCTTTAG+GGG + chr3_1:79086491-79086510 Msa0378320:CDS 40.0%
TGGGTCTAATAATGCTTTGG+TGG + chr3_1:79086520-79086539 Msa0378320:CDS 40.0%
GGGTCTAATAATGCTTTGGT+GGG + chr3_1:79086521-79086540 Msa0378320:CDS 40.0%
TGAGCATCAATGTTCCTAAC+TGG - chr3_1:79086576-79086595 None:intergenic 40.0%
! TTCTATACGGGGCTTTTGCA+AGG + chr3_1:79081809-79081828 Msa0378320:intron 45.0%
GAAGAGATAGGTCAGCATCA+AGG + chr3_1:79082005-79082024 Msa0378320:intron 45.0%
! GCTCTGCTGCATCTTTTTCT+TGG - chr3_1:79082033-79082052 None:intergenic 45.0%
GACCAAAGTTCCAACTATGG+TGG - chr3_1:79082121-79082140 None:intergenic 45.0%
CCAGACCAAAGTTCCAACTA+TGG - chr3_1:79082124-79082143 None:intergenic 45.0%
CCATAGTTGGAACTTTGGTC+TGG + chr3_1:79082121-79082140 Msa0378320:intron 45.0%
GGTACAGGATTATCCTTCCT+AGG - chr3_1:79082173-79082192 None:intergenic 45.0%
! GCTGTTGTTCCGTTGCATTT+TGG - chr3_1:79082227-79082246 None:intergenic 45.0%
ATCCTCACTACTTATACCGC+AGG + chr3_1:79082687-79082706 Msa0378320:intron 45.0%
AACCTGCGGTATAAGTAGTG+AGG - chr3_1:79082692-79082711 None:intergenic 45.0%
GTTTCAGTCCCCATGTAACA+AGG - chr3_1:79083301-79083320 None:intergenic 45.0%
! TGTCACTTCCGGAACAAAAC+TGG - chr3_1:79083323-79083342 None:intergenic 45.0%
ACTGGAATCACACCTCTGTA+TGG + chr3_1:79083564-79083583 Msa0378320:CDS 45.0%
AGAAGGCTAGAACCATACAG+AGG - chr3_1:79083579-79083598 None:intergenic 45.0%
ATCCCCAAACAAGACTTGCA+GGG - chr3_1:79083611-79083630 None:intergenic 45.0%
!! TGCAAGTCTTGTTTGGGGAT+GGG + chr3_1:79083611-79083630 Msa0378320:CDS 45.0%
! TTTTGTCCGGTTCCTGAGAA+TGG + chr3_1:79083757-79083776 Msa0378320:intron 45.0%
GGTAAACGACTGTTCTAGTC+AGG + chr3_1:79083809-79083828 Msa0378320:intron 45.0%
!! TTCACTGATTCATGTGCAGC+AGG - chr3_1:79084065-79084084 None:intergenic 45.0%
! TTTTGGGCTGCACATTTAGC+TGG + chr3_1:79084143-79084162 Msa0378320:CDS 45.0%
CACATTTAGCTGGTCCGAAA+TGG + chr3_1:79084153-79084172 Msa0378320:CDS 45.0%
CATTTAGCTGGTCCGAAATG+GGG + chr3_1:79084155-79084174 Msa0378320:CDS 45.0%
!! GAGACTGTAGGTCTTATTGC+TGG + chr3_1:79084209-79084228 Msa0378320:intron 45.0%
TATTGCTGGAATCGGTACTC+AGG + chr3_1:79084223-79084242 Msa0378320:intron 45.0%
! GTACTCAGGTAAGTGGACTT+TGG + chr3_1:79084237-79084256 Msa0378320:intron 45.0%
!! GTGTATGTTTGGATTGGTGG+TGG + chr3_1:79084269-79084288 Msa0378320:intron 45.0%
!! GAGGGTACTTTGCTCCAAAA+TGG + chr3_1:79084525-79084544 Msa0378320:CDS 45.0%
ATGCTGCCCATATAACAGTG+AGG - chr3_1:79084574-79084593 None:intergenic 45.0%
! TTGCTCCCACTTGCTGATAA+CGG + chr3_1:79084845-79084864 Msa0378320:intron 45.0%
CTTCACCGTTATCAGCAAGT+GGG - chr3_1:79084853-79084872 None:intergenic 45.0%
ACTTCACCGTTATCAGCAAG+TGG - chr3_1:79084854-79084873 None:intergenic 45.0%
!! TTGCTGATAACGGTGAAGTG+TGG + chr3_1:79084855-79084874 Msa0378320:intron 45.0%
AGTGATACTGTTACCTCTGG+TGG + chr3_1:79085014-79085033 Msa0378320:CDS 45.0%
TGTTTAGTTAGTGCCACCAG+AGG - chr3_1:79085030-79085049 None:intergenic 45.0%
CTGCAGCATCATATCCATAG+AGG - chr3_1:79085158-79085177 None:intergenic 45.0%
GGCACTTACATTCAGCATTC+AGG + chr3_1:79085278-79085297 Msa0378320:CDS 45.0%
GTGGCTCAATGAATCTTGCA+TGG - chr3_1:79085430-79085449 None:intergenic 45.0%
!! GGCCAACCAAAGTTCTAAGA+TGG + chr3_1:79085474-79085493 Msa0378320:intron 45.0%
GATCCAAACAATGAGACAGC+TGG + chr3_1:79085678-79085697 Msa0378320:CDS 45.0%
TGGGGTTCATTCTTCTTTGG+TGG + chr3_1:79085789-79085808 Msa0378320:intron 45.0%
GATACACCACACTAGTTAGG+AGG - chr3_1:79086080-79086099 None:intergenic 45.0%
TATGCCCTGTCAAGGGATAA+GGG + chr3_1:79086123-79086142 Msa0378320:CDS 45.0%
AACTCCCTTATCCCTTGACA+GGG - chr3_1:79086130-79086149 None:intergenic 45.0%
CAGAGCCATACAGCATTTGT+AGG - chr3_1:79086198-79086217 None:intergenic 45.0%
GCAGCAATCTGCATTCTTCT+TGG + chr3_1:79086219-79086238 Msa0378320:CDS 45.0%
ATAGCCACAATTGGATGGGT+TGG + chr3_1:79086288-79086307 Msa0378320:CDS 45.0%
AATGGTTTAAGGGGCCAGTT+AGG + chr3_1:79086559-79086578 Msa0378320:CDS 45.0%
!! AGGCACCGGCTTGTAAGATT+TGG + chr3_1:79081829-79081848 Msa0378320:intron 50.0%
GGCCACCATAGTTGGAACTT+TGG + chr3_1:79082116-79082135 Msa0378320:intron 50.0%
GATGGAGAAATGGTCAACCG+TGG + chr3_1:79082398-79082417 Msa0378320:intron 50.0%
AAGTCACGGCCCATGATAGT+AGG + chr3_1:79082546-79082565 Msa0378320:intron 50.0%
GTGAGTGACGCATTCATGTG+TGG + chr3_1:79083032-79083051 Msa0378320:intron 50.0%
! GGTTCTAGCCTTCTGTATGC+AGG + chr3_1:79083585-79083604 Msa0378320:CDS 50.0%
!! AGGCCCTGCAAGTCTTGTTT+GGG + chr3_1:79083605-79083624 Msa0378320:CDS 50.0%
CATCCCCAAACAAGACTTGC+AGG - chr3_1:79083612-79083631 None:intergenic 50.0%
!! CTGCAAGTCTTGTTTGGGGA+TGG + chr3_1:79083610-79083629 Msa0378320:CDS 50.0%
AGGGTTCCATTCTCAGGAAC+CGG - chr3_1:79083766-79083785 None:intergenic 50.0%
! TGTGCTTGGCTTGAGACTGT+AGG + chr3_1:79084197-79084216 Msa0378320:intron 50.0%
GGAATCGGTACTCAGGTAAG+TGG + chr3_1:79084230-79084249 Msa0378320:intron 50.0%
! ATGGTTGGAAAGGCGTATGC+AGG + chr3_1:79084449-79084468 Msa0378320:intron 50.0%
ACAGGCACAAATAAAGGCGG+AGG + chr3_1:79084506-79084525 Msa0378320:CDS 50.0%
CAGGCACAAATAAAGGCGGA+GGG + chr3_1:79084507-79084526 Msa0378320:CDS 50.0%
GTTCAACGGGTCTGATTGAC+TGG - chr3_1:79084741-79084760 None:intergenic 50.0%
!! TCGTCTGGTCTTGGTTCAAC+GGG - chr3_1:79084754-79084773 None:intergenic 50.0%
!! GTCGTCTGGTCTTGGTTCAA+CGG - chr3_1:79084755-79084774 None:intergenic 50.0%
AAGTGTGGTATCGTGACTGC+AGG + chr3_1:79084870-79084889 Msa0378320:intron 50.0%
GTGAGCCAGTATTCCCTCTA+TGG + chr3_1:79085141-79085160 Msa0378320:intron 50.0%
GCAAGTGACTCGATGCTATG+TGG - chr3_1:79085449-79085468 None:intergenic 50.0%
GCATCGAGTCACTTGCCATT+AGG + chr3_1:79085453-79085472 Msa0378320:intron 50.0%
GCTCCAGCTGTCTCATTGTT+TGG - chr3_1:79085684-79085703 None:intergenic 50.0%
TCGAATGAATCGGCCCAAAC+AGG - chr3_1:79085858-79085877 None:intergenic 50.0%
TTCAGGTCTATGCCCTGTCA+AGG + chr3_1:79086115-79086134 Msa0378320:intron 50.0%
TCAGGTCTATGCCCTGTCAA+GGG + chr3_1:79086116-79086135 Msa0378320:intron 50.0%
CTATGCCCTGTCAAGGGATA+AGG + chr3_1:79086122-79086141 Msa0378320:CDS 50.0%
GAACTCCCTTATCCCTTGAC+AGG - chr3_1:79086131-79086150 None:intergenic 50.0%
ACCACCAACCCATCCAATTG+TGG - chr3_1:79086295-79086314 None:intergenic 50.0%
CCAGGCTTGAAGTTCTTCTC+AGG - chr3_1:79086351-79086370 None:intergenic 50.0%
CCTGAGAAGAACTTCAAGCC+TGG + chr3_1:79086348-79086367 Msa0378320:CDS 50.0%
AAACCGACCCCTAAAGCAAC+AGG - chr3_1:79086501-79086520 None:intergenic 50.0%
!! TGTTGCTTTAGGGGTCGGTT+TGG + chr3_1:79086500-79086519 Msa0378320:CDS 50.0%
!! GTTGCTTTAGGGGTCGGTTT+GGG + chr3_1:79086501-79086520 Msa0378320:CDS 50.0%
TTGCAGGGCCTGCATACAGA+AGG - chr3_1:79083596-79083615 None:intergenic 55.0%
!! CAGGCCCTGCAAGTCTTGTT+TGG + chr3_1:79083604-79083623 Msa0378320:CDS 55.0%
!! GGCCCTGCAAGTCTTGTTTG+GGG + chr3_1:79083606-79083625 Msa0378320:CDS 55.0%
!! GCCACAATTGGATGGGTTGG+TGG + chr3_1:79086291-79086310 Msa0378320:CDS 55.0%
!! GCACCTGTTGCTTTAGGGGT+CGG + chr3_1:79086495-79086514 Msa0378320:CDS 55.0%
! ACGGGGCTTTTGCAAGGCAC+CGG + chr3_1:79081815-79081834 Msa0378320:intron 60.0%
! CACTACAAGTGCCGCCAGAG+TGG + chr3_1:79085821-79085840 Msa0378320:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 79081772 79086611 79081772 ID=Msa0378320;Name=Msa0378320
chr3_1 mRNA 79081772 79086611 79081772 ID=Msa0378320-mRNA-1;Parent=Msa0378320;Name=Msa0378320-mRNA-1;_AED=0.24;_eAED=0.25;_QI=0|0|0|1|0.62|0.55|9|0|509
chr3_1 exon 79081772 79081790 79081772 ID=Msa0378320-mRNA-1:exon:19312;Parent=Msa0378320-mRNA-1
chr3_1 exon 79083272 79083417 79083272 ID=Msa0378320-mRNA-1:exon:19313;Parent=Msa0378320-mRNA-1
chr3_1 exon 79083516 79083698 79083516 ID=Msa0378320-mRNA-1:exon:19314;Parent=Msa0378320-mRNA-1
chr3_1 exon 79084125 79084214 79084125 ID=Msa0378320-mRNA-1:exon:19315;Parent=Msa0378320-mRNA-1
chr3_1 exon 79084461 79084652 79084461 ID=Msa0378320-mRNA-1:exon:19316;Parent=Msa0378320-mRNA-1
chr3_1 exon 79084994 79085140 79084994 ID=Msa0378320-mRNA-1:exon:19317;Parent=Msa0378320-mRNA-1
chr3_1 exon 79085150 79085299 79085150 ID=Msa0378320-mRNA-1:exon:19318;Parent=Msa0378320-mRNA-1
chr3_1 exon 79085660 79085770 79085660 ID=Msa0378320-mRNA-1:exon:19319;Parent=Msa0378320-mRNA-1
chr3_1 exon 79086120 79086611 79086120 ID=Msa0378320-mRNA-1:exon:19320;Parent=Msa0378320-mRNA-1
chr3_1 CDS 79081772 79081790 79081772 ID=Msa0378320-mRNA-1:cds;Parent=Msa0378320-mRNA-1
chr3_1 CDS 79083272 79083417 79083272 ID=Msa0378320-mRNA-1:cds;Parent=Msa0378320-mRNA-1
chr3_1 CDS 79083516 79083698 79083516 ID=Msa0378320-mRNA-1:cds;Parent=Msa0378320-mRNA-1
chr3_1 CDS 79084125 79084214 79084125 ID=Msa0378320-mRNA-1:cds;Parent=Msa0378320-mRNA-1
chr3_1 CDS 79084461 79084652 79084461 ID=Msa0378320-mRNA-1:cds;Parent=Msa0378320-mRNA-1
chr3_1 CDS 79084994 79085140 79084994 ID=Msa0378320-mRNA-1:cds;Parent=Msa0378320-mRNA-1
chr3_1 CDS 79085150 79085299 79085150 ID=Msa0378320-mRNA-1:cds;Parent=Msa0378320-mRNA-1
chr3_1 CDS 79085660 79085770 79085660 ID=Msa0378320-mRNA-1:cds;Parent=Msa0378320-mRNA-1
chr3_1 CDS 79086120 79086611 79086120 ID=Msa0378320-mRNA-1:cds;Parent=Msa0378320-mRNA-1
Gene Sequence

>Msa0378320

ATGAATTCATCCAATAGTGATTACGTAAGAACTTCTCAACAGAACCCTTGTTACATGGGGACTGAAACCAGTTTTGTTCCGGAAGTGACAGAAAACATAGCTATGGATTCAGCAGAGAAGAGACTAAATGAGCTTGGTTACAAGCAAGAACTAAGAAGAGAAATGACTATGTTCAAAACTCTTGCGATAGCATTTTCAACAATGACGCTTTTCACTGGAATCACACCTCTGTATGGTTCTAGCCTTCTGTATGCAGGCCCTGCAAGTCTTGTTTGGGGATGGGTAGTTGTTTGTTTCTTCACTTGGTTTGTTGGGATTGCAATGGCTGAAATATGTTCATCTTTTCCGACAACTGGTTCTCTGTACTTTTGGGCTGCACATTTAGCTGGTCCGAAATGGGGACCATTTTCTTCATGGTGTTGTGCTTGGCTTGAGACTGCGTATGCAGGATCACAAACATTGCAGAGTATAATCCTACTCTCAACAGGCACAAATAAAGGCGGAGGGTACTTTGCTCCAAAATGGCTATTCTTATGTATGTACATTGGCCTCACTGTTATATGGGCAGCATTAAACACATTTGCATTAGAAGTCATTGCCTTCATCGATATAATTTCAATATGGTGGCAGGTTATTGGTGGAGCAGTGATAGTGATACTGTTACCTCTGGTGGCACTAACTAAACAATCAGCTACATATGTATTCACAAACTTTGAATTAGCATCTGATACAACAGGAGTTTCAAGCAAACCATATGCAGTGATTCTATCATTTCTTTATTCCCTCTATGGATATGATGCTGCAGCACATTTAACTGAAGAAACTAAAGGTGCAGACAAGAATGGACCCATAGCAATACTTGGTAGTATTGGCATCATTTCAGTATTTGGATGGGCTTACATCTTGGCACTTACATTCAGCATTCAGGATTTTGGTTACCTTTATGATCCAAACAATGAGACAGCTGGAGCATTTGTGCCAGCACAAATACTCTATGATGCATTCCATGGAAGATATCACAATTCTGCTGGAGCAATAGTCTATGCCCTGTCAAGGGATAAGGGAGTTCCATTTTCATTCTTATGGAAGAAACTGCATCCAAAACACAAGGTTCCTACAAATGCTGTATGGCTCTGTGCAGCAATCTGCATTCTTCTTGGTCTACCAATTTTGAAGGTGAATGTAGTCTTTACTGCAATAACTTCAATAGCCACAATTGGATGGGTTGGTGGTTATGCAGTTCCAATCTTTGCAAGAATGGTGATGCCTGAGAAGAACTTCAAGCCTGGACCTTTTTATTTGGGCAAGGCAAGCAGACCAATTTGCTTGATAGCATTTCTATGGATTTGTTACACATGTTCTGTATTCCTGTTGCCAACTCTTTATCCTATTACATGGGATACTTTCAATTATGCACCTGTTGCTTTAGGGGTCGGTTTGGGTCTAATAATGCTTTGGTGGGTATTAGATGCAAGAAAATGGTTTAAGGGGCCAGTTAGGAACATTGATGCTCAAAATGACAAAGTATAA

Protein sequence

>Msa0378320

MNSSNSDYVRTSQQNPCYMGTETSFVPEVTENIAMDSAEKRLNELGYKQELRREMTMFKTLAIAFSTMTLFTGITPLYGSSLLYAGPASLVWGWVVVCFFTWFVGIAMAEICSSFPTTGSLYFWAAHLAGPKWGPFSSWCCAWLETAYAGSQTLQSIILLSTGTNKGGGYFAPKWLFLCMYIGLTVIWAALNTFALEVIAFIDIISIWWQVIGGAVIVILLPLVALTKQSATYVFTNFELASDTTGVSSKPYAVILSFLYSLYGYDAAAHLTEETKGADKNGPIAILGSIGIISVFGWAYILALTFSIQDFGYLYDPNNETAGAFVPAQILYDAFHGRYHNSAGAIVYALSRDKGVPFSFLWKKLHPKHKVPTNAVWLCAAICILLGLPILKVNVVFTAITSIATIGWVGGYAVPIFARMVMPEKNFKPGPFYLGKASRPICLIAFLWICYTCSVFLLPTLYPITWDTFNYAPVALGVGLGLIMLWWVLDARKWFKGPVRNIDAQNDKV*