AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1357570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1357570 MtrunA17_Chr3g0123621 94.207 328 17 1 2 329 3 328 0.0 630
Msa1357570 MtrunA17_Chr8g0381681 61.538 325 114 6 7 328 9 325 1.13e-128 370
Msa1357570 MtrunA17_Chr3g0132501 37.631 287 169 4 2 280 5 289 1.57e-58 191
Msa1357570 MtrunA17_Chr4g0064391 34.591 159 92 5 4 155 9 162 2.94e-16 79.3
Msa1357570 MtrunA17_Chr3g0137621 33.333 147 93 3 4 147 6 150 3.38e-16 79.3
Msa1357570 MtrunA17_Chr2g0298681 29.902 204 125 6 4 192 7 207 6.42e-16 78.6
Msa1357570 MtrunA17_Chr4g0071851 28.571 196 122 5 5 185 8 200 8.12e-16 78.2
Msa1357570 MtrunA17_Chr8g0336601 35.135 148 90 3 4 147 6 151 1.72e-15 77.4
Msa1357570 MtrunA17_Chr8g0376161 33.125 160 98 5 1 155 4 159 2.21e-15 77.0
Msa1357570 MtrunA17_Chr2g0278681 33.784 148 92 3 4 147 6 151 2.28e-14 73.9
Msa1357570 MtrunA17_Chr3g0119631 30.405 148 99 4 3 148 4 149 5.98e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1357570 AT4G40080.1 47.714 350 157 8 1 328 4 349 1.08e-97 293
Msa1357570 AT5G10410.1 32.188 320 182 9 7 302 8 316 1.65e-35 132
Msa1357570 AT5G65370.1 31.068 309 170 9 1 281 1 294 2.36e-31 119
Msa1357570 AT5G57200.1 30.049 203 125 6 4 192 7 206 1.87e-16 80.5
Msa1357570 AT4G25940.1 28.641 206 123 6 1 185 4 206 2.13e-16 80.5
Msa1357570 AT4G02650.1 34.667 150 91 3 3 147 5 152 2.08e-15 77.4
Msa1357570 AT2G01600.1 30.222 225 138 8 1 210 4 224 3.11e-15 77.0
Msa1357570 AT2G25430.1 31.973 147 95 3 4 147 5 149 1.28e-14 75.1
Msa1357570 AT4G32285.1 31.293 147 96 3 4 147 5 149 2.39e-14 74.3
Msa1357570 AT4G32285.2 31.293 147 96 3 4 147 5 149 2.39e-14 74.3
Msa1357570 AT5G35200.1 29.947 187 121 6 4 185 11 192 2.28e-13 71.2
Msa1357570 AT5G35200.2 29.947 187 121 6 4 185 11 192 2.28e-13 71.2
Msa1357570 AT1G03050.1 32.000 150 95 3 3 147 5 152 5.90e-13 70.1
Msa1357570 AT1G14910.1 33.071 127 80 3 31 155 36 159 8.02e-13 69.7

Find 94 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACGGCGATTAAACATTTA+AGG 0.163434 tig0016100:-2642 None:intergenic
TTGGTTAGAGTTAAAGAATT+TGG 0.219230 tig0016100:+3060 Msa1357570:CDS
TGGTTAGAGTTAAAGAATTT+GGG 0.246190 tig0016100:+3061 Msa1357570:CDS
CTCTTGACTCTTCTTTCCTT+TGG 0.255907 tig0016100:+2538 Msa1357570:CDS
GTCAAGAGGTGTTTATGTTT+TGG 0.266887 tig0016100:-2523 None:intergenic
AAACTTGGTTGTCTTGGTTT+TGG 0.268735 tig0016100:+3093 Msa1357570:CDS
TGATTCTTTGTTGGCCTTGA+TGG 0.273576 tig0016100:+2930 Msa1357570:CDS
CAAGGTGGTTGTTGAGATAA+TGG 0.290329 tig0016100:+2996 Msa1357570:CDS
GGAGAAGAAATTCTGGGATT+TGG 0.296571 tig0016100:+3200 Msa1357570:CDS
CTGTGTGCTTCTAGAACTCT+TGG 0.303930 tig0016100:+2835 Msa1357570:CDS
TGGTTGAGGAGAAGAAATTC+TGG 0.306064 tig0016100:+3193 Msa1357570:CDS
TATCTTGGGAACTCTCTTCT+TGG 0.310691 tig0016100:+2779 Msa1357570:CDS
AGAACTCTTGGTTTCTTCCT+TGG 0.315271 tig0016100:+2847 Msa1357570:CDS
CCATTAGGTTTCCTTCTTCA+AGG 0.324011 tig0016100:+3355 Msa1357570:CDS
TGTTCACTCATTGGAGTATT+AGG 0.324515 tig0016100:-2970 None:intergenic
TGGGAGGATGAAGGTGTATA+GGG 0.331362 tig0016100:+3245 Msa1357570:CDS
TATGGTGATGAATGAAGTTT+TGG 0.344452 tig0016100:+3041 Msa1357570:CDS
ACAAAACAAGTTCAATATCT+TGG 0.345547 tig0016100:+2764 Msa1357570:CDS
TTCTCTTAACAGATCACTAT+TGG 0.348060 tig0016100:-2905 None:intergenic
ATCTTGGGAACTCTCTTCTT+GGG 0.358410 tig0016100:+2780 Msa1357570:CDS
TTAGGTCTGTTGATTCCATT+AGG 0.360896 tig0016100:+3340 Msa1357570:CDS
ACCTTGTTCTGTTCACTCAT+TGG 0.369895 tig0016100:-2979 None:intergenic
GGTGGAAGATGATGGGGATA+TGG 0.370878 tig0016100:+3023 Msa1357570:CDS
TTGGGAGGATGAAGGTGTAT+AGG 0.379157 tig0016100:+3244 Msa1357570:CDS
AAGAGAAACTGATTCTTTGT+TGG 0.385719 tig0016100:+2921 Msa1357570:CDS
AGTTAAAGAATTTGGGGAGA+GGG 0.391874 tig0016100:+3068 Msa1357570:CDS
ATGAAGGTGTATAGGGAAGA+AGG 0.403447 tig0016100:+3252 Msa1357570:CDS
TTGGCCTTGATGGAAGGAAT+TGG 0.410057 tig0016100:+2940 Msa1357570:CDS
AGGGAGAAACTTGGTTGTCT+TGG 0.426496 tig0016100:+3087 Msa1357570:CDS
GGTTGTTGAGATAATGGATT+TGG 0.430930 tig0016100:+3002 Msa1357570:CDS
CTCTGAAGTTTGAGAGGTTG+AGG 0.434153 tig0016100:-2741 None:intergenic
GGTTTGATAACAGAGTTCTT+AGG 0.438939 tig0016100:+3322 Msa1357570:CDS
ATGGATTTGGTGGAAGATGA+TGG 0.441076 tig0016100:+3015 Msa1357570:CDS
CTGCTGAGTTGTGAGTGGTT+TGG 0.441669 tig0016100:-2615 None:intergenic
ACCACCAGTGTAAGGGTAAA+CGG 0.442204 tig0016100:-2710 None:intergenic
CAAAACAAGTTCAATATCTT+GGG 0.446855 tig0016100:+2765 Msa1357570:CDS
TAGTTTCTACCACCAGTGTA+AGG 0.447417 tig0016100:-2718 None:intergenic
AACTCTCTTCTTGGGTTCGA+TGG 0.450996 tig0016100:+2788 Msa1357570:CDS
TGGATTTGGTGGAAGATGAT+GGG 0.452662 tig0016100:+3016 Msa1357570:CDS
AAGAAACTGAAAGAGGTGAT+AGG 0.455772 tig0016100:+2400 Msa1357570:CDS
AACGGCGATTAAACATTTAA+GGG 0.462073 tig0016100:-2641 None:intergenic
CCTTGAAGAAGGAAACCTAA+TGG 0.462290 tig0016100:-3355 None:intergenic
TTTGGGGAGAGGGAGAAACT+TGG 0.467834 tig0016100:+3078 Msa1357570:CDS
AGAGAATTGAAGGAAAAGGT+TGG 0.470401 tig0016100:+3225 Msa1357570:CDS
GATGATGATGGAGGTGGTTG+AGG 0.470627 tig0016100:+3179 Msa1357570:CDS
GGATTTGGTGAGAGAATTGA+AGG 0.473257 tig0016100:+3215 Msa1357570:CDS
GAGTTAAAGAATTTGGGGAG+AGG 0.480788 tig0016100:+3067 Msa1357570:CDS
TGGCCTTGATGGAAGGAATT+GGG 0.482108 tig0016100:+2941 Msa1357570:CDS
TGAAGGTGTATAGGGAAGAA+GGG 0.482642 tig0016100:+3253 Msa1357570:CDS
GGTGAGAGAATTGAAGGAAA+AGG 0.483133 tig0016100:+3221 Msa1357570:CDS
CTCTGCGGTGGAACTTCTCA+TGG 0.486922 tig0016100:+2585 Msa1357570:CDS
ACTCTTCTTTCCTTTGGAGA+CGG 0.488107 tig0016100:+2544 Msa1357570:CDS
GAGAATTGAAGGAAAAGGTT+GGG 0.493649 tig0016100:+3226 Msa1357570:CDS
TTTCCCAATTCCTTCCATCA+AGG 0.501907 tig0016100:-2944 None:intergenic
GGTTGAGGAGAAGAAATTCT+GGG 0.518899 tig0016100:+3194 Msa1357570:CDS
AAGTTCCACCGCAGAGGATG+CGG 0.523426 tig0016100:-2578 None:intergenic
TGTTGAGATAATGGATTTGG+TGG 0.523862 tig0016100:+3005 Msa1357570:CDS
AGAGGTGATAGGAATAATGA+AGG 0.532720 tig0016100:+2411 Msa1357570:CDS
ATTTACAAGAACCTTGAAGA+AGG 0.539232 tig0016100:-3366 None:intergenic
GGTGAAACGACGTCAGAGAA+AGG 0.547020 tig0016100:+2868 Msa1357570:CDS
GGATTTGGTGGAAGATGATG+GGG 0.548795 tig0016100:+3017 Msa1357570:CDS
GGAAAAGGTTGGGAGGATGA+AGG 0.554877 tig0016100:+3236 Msa1357570:CDS
GAGCTGATCACGGAGGATGA+AGG 0.556396 tig0016100:-2686 None:intergenic
AGAAGGGAGGCTTAGCAGTA+CGG 0.556866 tig0016100:+3269 Msa1357570:CDS
AGTTGTGAGTGGTTTGGAGA+CGG 0.568196 tig0016100:-2609 None:intergenic
TCTTTGTTGGCCTTGATGGA+AGG 0.570838 tig0016100:+2934 Msa1357570:CDS
TGCCACCGCATCCTCTGCGG+TGG 0.571717 tig0016100:+2573 Msa1357570:CDS
ACAGAAGAACCGAGTCTGAT+CGG 0.577525 tig0016100:+3301 Msa1357570:CDS
TTCAATGAAGAAACTGAAAG+AGG 0.579832 tig0016100:+2393 None:intergenic
TCCGTTTACCCTTACACTGG+TGG 0.585451 tig0016100:+2709 Msa1357570:CDS
GAGTTCTAGAAGCACACAGA+AGG 0.587402 tig0016100:-2831 None:intergenic
GGCTACTGCTGAGTTGTGAG+TGG 0.589218 tig0016100:-2620 None:intergenic
TCCAATGAGTGAACAGAACA+AGG 0.589835 tig0016100:+2978 Msa1357570:CDS
GGTTAGAGTTAAAGAATTTG+GGG 0.590495 tig0016100:+3062 Msa1357570:CDS
AATTGAAGGAAAAGGTTGGG+AGG 0.600206 tig0016100:+3229 Msa1357570:CDS
CTCTCCGTTTACCCTTACAC+TGG 0.601794 tig0016100:+2706 Msa1357570:CDS
TTCCACCGCAGAGGATGCGG+TGG 0.601897 tig0016100:-2575 None:intergenic
TTCTTGGGTTCGATGGTACG+CGG 0.608953 tig0016100:+2795 Msa1357570:CDS
GTTATCAAACCGATCAGACT+CGG 0.612148 tig0016100:-3310 None:intergenic
GTTGTAAGAGTCGTGTGTCG+TGG 0.620262 tig0016100:-2497 None:intergenic
AGTTTCTACCACCAGTGTAA+GGG 0.622840 tig0016100:-2717 None:intergenic
CGTGTGTCGTGGCACGAAGG+AGG 0.629672 tig0016100:-2486 None:intergenic
AGGTACCGTGTTTGATGATG+TGG 0.633958 tig0016100:-2666 None:intergenic
AGGTGTATAGGGAAGAAGGG+AGG 0.646656 tig0016100:+3256 Msa1357570:CDS
CAAAGGAAAGAAGAGTCAAG+AGG 0.654298 tig0016100:-2537 None:intergenic
CATGAGAAGTTCCACCGCAG+AGG 0.657819 tig0016100:-2584 None:intergenic
GGTAAACGGAGAGCTGATCA+CGG 0.664071 tig0016100:-2696 None:intergenic
GTGTTTGATGATGTGGTGAA+CGG 0.664912 tig0016100:-2659 None:intergenic
AGTCGTGTGTCGTGGCACGA+AGG 0.668004 tig0016100:-2489 None:intergenic
ACGTGCCACCGCATCCTCTG+CGG 0.680106 tig0016100:+2570 Msa1357570:CDS
TCTCTGACGTCGTTTCACCA+AGG 0.687518 tig0016100:-2864 None:intergenic
GTTCACCACATCATCAAACA+CGG 0.734907 tig0016100:+2661 Msa1357570:CDS
AATGAGTGAACAGAACAAGG+TGG 0.762477 tig0016100:+2981 Msa1357570:CDS
AAACGGAGAGCTGATCACGG+AGG 0.785713 tig0016100:-2693 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ACAAAACAAGTTCAATATCT+TGG + tig0016100:2764-2783 Msa1357570:CDS 25.0%
! CAAAACAAGTTCAATATCTT+GGG + tig0016100:2765-2784 Msa1357570:CDS 25.0%
! TTGGTTAGAGTTAAAGAATT+TGG + tig0016100:3060-3079 Msa1357570:CDS 25.0%
! TGGTTAGAGTTAAAGAATTT+GGG + tig0016100:3061-3080 Msa1357570:CDS 25.0%
! ACAAAACAAGTTCAATATCT+TGG + tig0016100:2764-2783 Msa1357570:CDS 25.0%
! CAAAACAAGTTCAATATCTT+GGG + tig0016100:2765-2784 Msa1357570:CDS 25.0%
! TTGGTTAGAGTTAAAGAATT+TGG + tig0016100:3060-3079 Msa1357570:CDS 25.0%
! TGGTTAGAGTTAAAGAATTT+GGG + tig0016100:3061-3080 Msa1357570:CDS 25.0%
AACGGCGATTAAACATTTAA+GGG - tig0016100:2644-2663 None:intergenic 30.0%
TTCTCTTAACAGATCACTAT+TGG - tig0016100:2908-2927 None:intergenic 30.0%
! AAGAGAAACTGATTCTTTGT+TGG + tig0016100:2921-2940 Msa1357570:CDS 30.0%
!! TATGGTGATGAATGAAGTTT+TGG + tig0016100:3041-3060 Msa1357570:CDS 30.0%
GGTTAGAGTTAAAGAATTTG+GGG + tig0016100:3062-3081 Msa1357570:CDS 30.0%
AACGGCGATTAAACATTTAA+GGG - tig0016100:2644-2663 None:intergenic 30.0%
TTCTCTTAACAGATCACTAT+TGG - tig0016100:2908-2927 None:intergenic 30.0%
! AAGAGAAACTGATTCTTTGT+TGG + tig0016100:2921-2940 Msa1357570:CDS 30.0%
!! TATGGTGATGAATGAAGTTT+TGG + tig0016100:3041-3060 Msa1357570:CDS 30.0%
GGTTAGAGTTAAAGAATTTG+GGG + tig0016100:3062-3081 Msa1357570:CDS 30.0%
AAGAAACTGAAAGAGGTGAT+AGG + tig0016100:2400-2419 Msa1357570:CDS 35.0%
AGAGGTGATAGGAATAATGA+AGG + tig0016100:2411-2430 Msa1357570:CDS 35.0%
!!! AGAGGTGTTTATGTTTTGGA+GGG - tig0016100:2522-2541 None:intergenic 35.0%
!!! AAGAGGTGTTTATGTTTTGG+AGG - tig0016100:2523-2542 None:intergenic 35.0%
!!! GTCAAGAGGTGTTTATGTTT+TGG - tig0016100:2526-2545 None:intergenic 35.0%
GAACGGCGATTAAACATTTA+AGG - tig0016100:2645-2664 None:intergenic 35.0%
!!! TTTTGTCTCTGAAGTTTGAG+AGG - tig0016100:2750-2769 None:intergenic 35.0%
! TGTTCACTCATTGGAGTATT+AGG - tig0016100:2973-2992 None:intergenic 35.0%
!! GGTTGTTGAGATAATGGATT+TGG + tig0016100:3002-3021 Msa1357570:CDS 35.0%
!! TGTTGAGATAATGGATTTGG+TGG + tig0016100:3005-3024 Msa1357570:CDS 35.0%
AGTTAAAGAATTTGGGGAGA+GGG + tig0016100:3068-3087 Msa1357570:CDS 35.0%
! AAACTTGGTTGTCTTGGTTT+TGG + tig0016100:3093-3112 Msa1357570:CDS 35.0%
!!! GGTTTGTGTTTTGAAGAGAT+TGG + tig0016100:3131-3150 Msa1357570:CDS 35.0%
! GAGAATGATGATGATGATGA+TGG + tig0016100:3167-3186 Msa1357570:CDS 35.0%
!! AATGATGATGATGATGATGG+AGG + tig0016100:3170-3189 Msa1357570:CDS 35.0%
AGAGAATTGAAGGAAAAGGT+TGG + tig0016100:3225-3244 Msa1357570:CDS 35.0%
GAGAATTGAAGGAAAAGGTT+GGG + tig0016100:3226-3245 Msa1357570:CDS 35.0%
! GGTTTGATAACAGAGTTCTT+AGG + tig0016100:3322-3341 Msa1357570:CDS 35.0%
!! TTAGGTCTGTTGATTCCATT+AGG + tig0016100:3340-3359 Msa1357570:CDS 35.0%
AAGAAACTGAAAGAGGTGAT+AGG + tig0016100:2400-2419 Msa1357570:CDS 35.0%
AGAGGTGATAGGAATAATGA+AGG + tig0016100:2411-2430 Msa1357570:CDS 35.0%
!!! AGAGGTGTTTATGTTTTGGA+GGG - tig0016100:2522-2541 None:intergenic 35.0%
!!! AAGAGGTGTTTATGTTTTGG+AGG - tig0016100:2523-2542 None:intergenic 35.0%
!!! GTCAAGAGGTGTTTATGTTT+TGG - tig0016100:2526-2545 None:intergenic 35.0%
GAACGGCGATTAAACATTTA+AGG - tig0016100:2645-2664 None:intergenic 35.0%
!!! TTTTGTCTCTGAAGTTTGAG+AGG - tig0016100:2750-2769 None:intergenic 35.0%
! TGTTCACTCATTGGAGTATT+AGG - tig0016100:2973-2992 None:intergenic 35.0%
!! GGTTGTTGAGATAATGGATT+TGG + tig0016100:3002-3021 Msa1357570:CDS 35.0%
!! TGTTGAGATAATGGATTTGG+TGG + tig0016100:3005-3024 Msa1357570:CDS 35.0%
AGTTAAAGAATTTGGGGAGA+GGG + tig0016100:3068-3087 Msa1357570:CDS 35.0%
! AAACTTGGTTGTCTTGGTTT+TGG + tig0016100:3093-3112 Msa1357570:CDS 35.0%
!!! GGTTTGTGTTTTGAAGAGAT+TGG + tig0016100:3131-3150 Msa1357570:CDS 35.0%
! GAGAATGATGATGATGATGA+TGG + tig0016100:3167-3186 Msa1357570:CDS 35.0%
!! AATGATGATGATGATGATGG+AGG + tig0016100:3170-3189 Msa1357570:CDS 35.0%
AGAGAATTGAAGGAAAAGGT+TGG + tig0016100:3225-3244 Msa1357570:CDS 35.0%
GAGAATTGAAGGAAAAGGTT+GGG + tig0016100:3226-3245 Msa1357570:CDS 35.0%
! GGTTTGATAACAGAGTTCTT+AGG + tig0016100:3322-3341 Msa1357570:CDS 35.0%
!! TTAGGTCTGTTGATTCCATT+AGG + tig0016100:3340-3359 Msa1357570:CDS 35.0%
CAAAGGAAAGAAGAGTCAAG+AGG - tig0016100:2540-2559 None:intergenic 40.0%
CTCTTGACTCTTCTTTCCTT+TGG + tig0016100:2538-2557 Msa1357570:CDS 40.0%
! ACTCTTCTTTCCTTTGGAGA+CGG + tig0016100:2544-2563 Msa1357570:CDS 40.0%
!! GTGTTTGATGATGTGGTGAA+CGG - tig0016100:2662-2681 None:intergenic 40.0%
GTTCACCACATCATCAAACA+CGG + tig0016100:2661-2680 Msa1357570:CDS 40.0%
AGTTTCTACCACCAGTGTAA+GGG - tig0016100:2720-2739 None:intergenic 40.0%
TAGTTTCTACCACCAGTGTA+AGG - tig0016100:2721-2740 None:intergenic 40.0%
TATCTTGGGAACTCTCTTCT+TGG + tig0016100:2779-2798 Msa1357570:CDS 40.0%
ATCTTGGGAACTCTCTTCTT+GGG + tig0016100:2780-2799 Msa1357570:CDS 40.0%
AGAACTCTTGGTTTCTTCCT+TGG + tig0016100:2847-2866 Msa1357570:CDS 40.0%
!! TGATTCTTTGTTGGCCTTGA+TGG + tig0016100:2930-2949 Msa1357570:CDS 40.0%
TTTCCCAATTCCTTCCATCA+AGG - tig0016100:2947-2966 None:intergenic 40.0%
TCCAATGAGTGAACAGAACA+AGG + tig0016100:2978-2997 Msa1357570:CDS 40.0%
ACCTTGTTCTGTTCACTCAT+TGG - tig0016100:2982-3001 None:intergenic 40.0%
AATGAGTGAACAGAACAAGG+TGG + tig0016100:2981-3000 Msa1357570:CDS 40.0%
CAAGGTGGTTGTTGAGATAA+TGG + tig0016100:2996-3015 Msa1357570:CDS 40.0%
!! ATGGATTTGGTGGAAGATGA+TGG + tig0016100:3015-3034 Msa1357570:CDS 40.0%
!! TGGATTTGGTGGAAGATGAT+GGG + tig0016100:3016-3035 Msa1357570:CDS 40.0%
GAGTTAAAGAATTTGGGGAG+AGG + tig0016100:3067-3086 Msa1357570:CDS 40.0%
!!! TTGTCTTGGTTTTGGAGAAG+TGG + tig0016100:3101-3120 Msa1357570:CDS 40.0%
!! TTTTGGAGAAGTGGTGGAAT+TGG + tig0016100:3110-3129 Msa1357570:CDS 40.0%
TGGTTGAGGAGAAGAAATTC+TGG + tig0016100:3193-3212 Msa1357570:CDS 40.0%
GGTTGAGGAGAAGAAATTCT+GGG + tig0016100:3194-3213 Msa1357570:CDS 40.0%
!! GGAGAAGAAATTCTGGGATT+TGG + tig0016100:3200-3219 Msa1357570:CDS 40.0%
!! GGATTTGGTGAGAGAATTGA+AGG + tig0016100:3215-3234 Msa1357570:CDS 40.0%
GGTGAGAGAATTGAAGGAAA+AGG + tig0016100:3221-3240 Msa1357570:CDS 40.0%
AATTGAAGGAAAAGGTTGGG+AGG + tig0016100:3229-3248 Msa1357570:CDS 40.0%
! ATGAAGGTGTATAGGGAAGA+AGG + tig0016100:3252-3271 Msa1357570:CDS 40.0%
! TGAAGGTGTATAGGGAAGAA+GGG + tig0016100:3253-3272 Msa1357570:CDS 40.0%
GTTATCAAACCGATCAGACT+CGG - tig0016100:3313-3332 None:intergenic 40.0%
CCTTGAAGAAGGAAACCTAA+TGG - tig0016100:3358-3377 None:intergenic 40.0%
CCATTAGGTTTCCTTCTTCA+AGG + tig0016100:3355-3374 Msa1357570:CDS 40.0%
CAAAGGAAAGAAGAGTCAAG+AGG - tig0016100:2540-2559 None:intergenic 40.0%
CTCTTGACTCTTCTTTCCTT+TGG + tig0016100:2538-2557 Msa1357570:CDS 40.0%
! ACTCTTCTTTCCTTTGGAGA+CGG + tig0016100:2544-2563 Msa1357570:CDS 40.0%
!! GTGTTTGATGATGTGGTGAA+CGG - tig0016100:2662-2681 None:intergenic 40.0%
GTTCACCACATCATCAAACA+CGG + tig0016100:2661-2680 Msa1357570:CDS 40.0%
AGTTTCTACCACCAGTGTAA+GGG - tig0016100:2720-2739 None:intergenic 40.0%
TAGTTTCTACCACCAGTGTA+AGG - tig0016100:2721-2740 None:intergenic 40.0%
TATCTTGGGAACTCTCTTCT+TGG + tig0016100:2779-2798 Msa1357570:CDS 40.0%
ATCTTGGGAACTCTCTTCTT+GGG + tig0016100:2780-2799 Msa1357570:CDS 40.0%
AGAACTCTTGGTTTCTTCCT+TGG + tig0016100:2847-2866 Msa1357570:CDS 40.0%
!! TGATTCTTTGTTGGCCTTGA+TGG + tig0016100:2930-2949 Msa1357570:CDS 40.0%
TTTCCCAATTCCTTCCATCA+AGG - tig0016100:2947-2966 None:intergenic 40.0%
TCCAATGAGTGAACAGAACA+AGG + tig0016100:2978-2997 Msa1357570:CDS 40.0%
ACCTTGTTCTGTTCACTCAT+TGG - tig0016100:2982-3001 None:intergenic 40.0%
AATGAGTGAACAGAACAAGG+TGG + tig0016100:2981-3000 Msa1357570:CDS 40.0%
CAAGGTGGTTGTTGAGATAA+TGG + tig0016100:2996-3015 Msa1357570:CDS 40.0%
!! ATGGATTTGGTGGAAGATGA+TGG + tig0016100:3015-3034 Msa1357570:CDS 40.0%
!! TGGATTTGGTGGAAGATGAT+GGG + tig0016100:3016-3035 Msa1357570:CDS 40.0%
GAGTTAAAGAATTTGGGGAG+AGG + tig0016100:3067-3086 Msa1357570:CDS 40.0%
!!! TTGTCTTGGTTTTGGAGAAG+TGG + tig0016100:3101-3120 Msa1357570:CDS 40.0%
!! TTTTGGAGAAGTGGTGGAAT+TGG + tig0016100:3110-3129 Msa1357570:CDS 40.0%
TGGTTGAGGAGAAGAAATTC+TGG + tig0016100:3193-3212 Msa1357570:CDS 40.0%
GGTTGAGGAGAAGAAATTCT+GGG + tig0016100:3194-3213 Msa1357570:CDS 40.0%
!! GGAGAAGAAATTCTGGGATT+TGG + tig0016100:3200-3219 Msa1357570:CDS 40.0%
!! GGATTTGGTGAGAGAATTGA+AGG + tig0016100:3215-3234 Msa1357570:CDS 40.0%
GGTGAGAGAATTGAAGGAAA+AGG + tig0016100:3221-3240 Msa1357570:CDS 40.0%
AATTGAAGGAAAAGGTTGGG+AGG + tig0016100:3229-3248 Msa1357570:CDS 40.0%
! ATGAAGGTGTATAGGGAAGA+AGG + tig0016100:3252-3271 Msa1357570:CDS 40.0%
! TGAAGGTGTATAGGGAAGAA+GGG + tig0016100:3253-3272 Msa1357570:CDS 40.0%
GTTATCAAACCGATCAGACT+CGG - tig0016100:3313-3332 None:intergenic 40.0%
CCTTGAAGAAGGAAACCTAA+TGG - tig0016100:3358-3377 None:intergenic 40.0%
CCATTAGGTTTCCTTCTTCA+AGG + tig0016100:3355-3374 Msa1357570:CDS 40.0%
! AGTTGTGAGTGGTTTGGAGA+CGG - tig0016100:2612-2631 None:intergenic 45.0%
!! AGGTACCGTGTTTGATGATG+TGG - tig0016100:2669-2688 None:intergenic 45.0%
ACCACCAGTGTAAGGGTAAA+CGG - tig0016100:2713-2732 None:intergenic 45.0%
!! CTCTGAAGTTTGAGAGGTTG+AGG - tig0016100:2744-2763 None:intergenic 45.0%
AACTCTCTTCTTGGGTTCGA+TGG + tig0016100:2788-2807 Msa1357570:CDS 45.0%
!! GAGTTCTAGAAGCACACAGA+AGG - tig0016100:2834-2853 None:intergenic 45.0%
!! CTGTGTGCTTCTAGAACTCT+TGG + tig0016100:2835-2854 Msa1357570:CDS 45.0%
!! TCTTTGTTGGCCTTGATGGA+AGG + tig0016100:2934-2953 Msa1357570:CDS 45.0%
!! TTGGCCTTGATGGAAGGAAT+TGG + tig0016100:2940-2959 Msa1357570:CDS 45.0%
! TGGCCTTGATGGAAGGAATT+GGG + tig0016100:2941-2960 Msa1357570:CDS 45.0%
!! GGATTTGGTGGAAGATGATG+GGG + tig0016100:3017-3036 Msa1357570:CDS 45.0%
AGGGAGAAACTTGGTTGTCT+TGG + tig0016100:3087-3106 Msa1357570:CDS 45.0%
!!! TCTTGGTTTTGGAGAAGTGG+TGG + tig0016100:3104-3123 Msa1357570:CDS 45.0%
!! GATGATGATGATGATGGAGG+TGG + tig0016100:3173-3192 Msa1357570:CDS 45.0%
! TTGGGAGGATGAAGGTGTAT+AGG + tig0016100:3244-3263 Msa1357570:CDS 45.0%
! TGGGAGGATGAAGGTGTATA+GGG + tig0016100:3245-3264 Msa1357570:CDS 45.0%
ACAGAAGAACCGAGTCTGAT+CGG + tig0016100:3301-3320 Msa1357570:CDS 45.0%
! AGTTGTGAGTGGTTTGGAGA+CGG - tig0016100:2612-2631 None:intergenic 45.0%
!! AGGTACCGTGTTTGATGATG+TGG - tig0016100:2669-2688 None:intergenic 45.0%
ACCACCAGTGTAAGGGTAAA+CGG - tig0016100:2713-2732 None:intergenic 45.0%
!! CTCTGAAGTTTGAGAGGTTG+AGG - tig0016100:2744-2763 None:intergenic 45.0%
AACTCTCTTCTTGGGTTCGA+TGG + tig0016100:2788-2807 Msa1357570:CDS 45.0%
!! GAGTTCTAGAAGCACACAGA+AGG - tig0016100:2834-2853 None:intergenic 45.0%
!! CTGTGTGCTTCTAGAACTCT+TGG + tig0016100:2835-2854 Msa1357570:CDS 45.0%
!! TCTTTGTTGGCCTTGATGGA+AGG + tig0016100:2934-2953 Msa1357570:CDS 45.0%
!! TTGGCCTTGATGGAAGGAAT+TGG + tig0016100:2940-2959 Msa1357570:CDS 45.0%
! TGGCCTTGATGGAAGGAATT+GGG + tig0016100:2941-2960 Msa1357570:CDS 45.0%
!! GGATTTGGTGGAAGATGATG+GGG + tig0016100:3017-3036 Msa1357570:CDS 45.0%
AGGGAGAAACTTGGTTGTCT+TGG + tig0016100:3087-3106 Msa1357570:CDS 45.0%
!!! TCTTGGTTTTGGAGAAGTGG+TGG + tig0016100:3104-3123 Msa1357570:CDS 45.0%
!! GATGATGATGATGATGGAGG+TGG + tig0016100:3173-3192 Msa1357570:CDS 45.0%
! TTGGGAGGATGAAGGTGTAT+AGG + tig0016100:3244-3263 Msa1357570:CDS 45.0%
! TGGGAGGATGAAGGTGTATA+GGG + tig0016100:3245-3264 Msa1357570:CDS 45.0%
ACAGAAGAACCGAGTCTGAT+CGG + tig0016100:3301-3320 Msa1357570:CDS 45.0%
GTTGTAAGAGTCGTGTGTCG+TGG - tig0016100:2500-2519 None:intergenic 50.0%
CTGCTGAGTTGTGAGTGGTT+TGG - tig0016100:2618-2637 None:intergenic 50.0%
GGTAAACGGAGAGCTGATCA+CGG - tig0016100:2699-2718 None:intergenic 50.0%
CTCTCCGTTTACCCTTACAC+TGG + tig0016100:2706-2725 Msa1357570:CDS 50.0%
TCCGTTTACCCTTACACTGG+TGG + tig0016100:2709-2728 Msa1357570:CDS 50.0%
TTCTTGGGTTCGATGGTACG+CGG + tig0016100:2795-2814 Msa1357570:CDS 50.0%
TCTCTGACGTCGTTTCACCA+AGG - tig0016100:2867-2886 None:intergenic 50.0%
GGTGAAACGACGTCAGAGAA+AGG + tig0016100:2868-2887 Msa1357570:CDS 50.0%
!! GGTGGAAGATGATGGGGATA+TGG + tig0016100:3023-3042 Msa1357570:CDS 50.0%
TTTGGGGAGAGGGAGAAACT+TGG + tig0016100:3078-3097 Msa1357570:CDS 50.0%
!! GATGATGATGGAGGTGGTTG+AGG + tig0016100:3179-3198 Msa1357570:CDS 50.0%
GGAAAAGGTTGGGAGGATGA+AGG + tig0016100:3236-3255 Msa1357570:CDS 50.0%
AGGTGTATAGGGAAGAAGGG+AGG + tig0016100:3256-3275 Msa1357570:CDS 50.0%
AGAAGGGAGGCTTAGCAGTA+CGG + tig0016100:3269-3288 Msa1357570:CDS 50.0%
GTTGTAAGAGTCGTGTGTCG+TGG - tig0016100:2500-2519 None:intergenic 50.0%
CTGCTGAGTTGTGAGTGGTT+TGG - tig0016100:2618-2637 None:intergenic 50.0%
GGTAAACGGAGAGCTGATCA+CGG - tig0016100:2699-2718 None:intergenic 50.0%
CTCTCCGTTTACCCTTACAC+TGG + tig0016100:2706-2725 Msa1357570:CDS 50.0%
TCCGTTTACCCTTACACTGG+TGG + tig0016100:2709-2728 Msa1357570:CDS 50.0%
TTCTTGGGTTCGATGGTACG+CGG + tig0016100:2795-2814 Msa1357570:CDS 50.0%
TCTCTGACGTCGTTTCACCA+AGG - tig0016100:2867-2886 None:intergenic 50.0%
GGTGAAACGACGTCAGAGAA+AGG + tig0016100:2868-2887 Msa1357570:CDS 50.0%
!! GGTGGAAGATGATGGGGATA+TGG + tig0016100:3023-3042 Msa1357570:CDS 50.0%
TTTGGGGAGAGGGAGAAACT+TGG + tig0016100:3078-3097 Msa1357570:CDS 50.0%
!! GATGATGATGGAGGTGGTTG+AGG + tig0016100:3179-3198 Msa1357570:CDS 50.0%
GGAAAAGGTTGGGAGGATGA+AGG + tig0016100:3236-3255 Msa1357570:CDS 50.0%
AGGTGTATAGGGAAGAAGGG+AGG + tig0016100:3256-3275 Msa1357570:CDS 50.0%
AGAAGGGAGGCTTAGCAGTA+CGG + tig0016100:3269-3288 Msa1357570:CDS 50.0%
AAGTTCCACCGCAGAGGATG+CGG - tig0016100:2581-2600 None:intergenic 55.0%
CATGAGAAGTTCCACCGCAG+AGG - tig0016100:2587-2606 None:intergenic 55.0%
CTCTGCGGTGGAACTTCTCA+TGG + tig0016100:2585-2604 Msa1357570:CDS 55.0%
GGCTACTGCTGAGTTGTGAG+TGG - tig0016100:2623-2642 None:intergenic 55.0%
GAGCTGATCACGGAGGATGA+AGG - tig0016100:2689-2708 None:intergenic 55.0%
AAACGGAGAGCTGATCACGG+AGG - tig0016100:2696-2715 None:intergenic 55.0%
AAGTTCCACCGCAGAGGATG+CGG - tig0016100:2581-2600 None:intergenic 55.0%
CATGAGAAGTTCCACCGCAG+AGG - tig0016100:2587-2606 None:intergenic 55.0%
CTCTGCGGTGGAACTTCTCA+TGG + tig0016100:2585-2604 Msa1357570:CDS 55.0%
GGCTACTGCTGAGTTGTGAG+TGG - tig0016100:2623-2642 None:intergenic 55.0%
GAGCTGATCACGGAGGATGA+AGG - tig0016100:2689-2708 None:intergenic 55.0%
AAACGGAGAGCTGATCACGG+AGG - tig0016100:2696-2715 None:intergenic 55.0%
AGTCGTGTGTCGTGGCACGA+AGG - tig0016100:2492-2511 None:intergenic 60.0%
GGCACGTGAACCGTCTCCAA+AGG - tig0016100:2557-2576 None:intergenic 60.0%
AGTCGTGTGTCGTGGCACGA+AGG - tig0016100:2492-2511 None:intergenic 60.0%
GGCACGTGAACCGTCTCCAA+AGG - tig0016100:2557-2576 None:intergenic 60.0%
CGTGTGTCGTGGCACGAAGG+AGG - tig0016100:2489-2508 None:intergenic 65.0%
ACGTGCCACCGCATCCTCTG+CGG + tig0016100:2570-2589 Msa1357570:CDS 65.0%
TTCCACCGCAGAGGATGCGG+TGG - tig0016100:2578-2597 None:intergenic 65.0%
CGTGTGTCGTGGCACGAAGG+AGG - tig0016100:2489-2508 None:intergenic 65.0%
ACGTGCCACCGCATCCTCTG+CGG + tig0016100:2570-2589 Msa1357570:CDS 65.0%
TTCCACCGCAGAGGATGCGG+TGG - tig0016100:2578-2597 None:intergenic 65.0%
TGCCACCGCATCCTCTGCGG+TGG + tig0016100:2573-2592 Msa1357570:CDS 70.0%
TGCCACCGCATCCTCTGCGG+TGG + tig0016100:2573-2592 Msa1357570:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0016100 gene 2397 3386 2397 ID=Msa1357570;Name=Msa1357570
tig0016100 mRNA 2397 3386 2397 ID=Msa1357570-mRNA-1;Parent=Msa1357570;Name=Msa1357570-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|329
tig0016100 exon 2397 3386 2397 ID=Msa1357570-mRNA-1:exon:10448;Parent=Msa1357570-mRNA-1
tig0016100 CDS 2397 3386 2397 ID=Msa1357570-mRNA-1:cds;Parent=Msa1357570-mRNA-1
Gene Sequence

>Msa1357570

ATGAAGAAACTGAAAGAGGTGATAGGAATAATGAAGGACAAAGCATCACAAAGCAAAGCTGCAATTTTATCAAAACGTAAAACTCTCTTCCTCCTTCGTGCCACGACACACGACTCTTACAACCCTCCAAAACATAAACACCTCTTGACTCTTCTTTCCTTTGGAGACGGTTCACGTGCCACCGCATCCTCTGCGGTGGAACTTCTCATGGACCGTCTCCAAACCACTCACAACTCAGCAGTAGCCCTTAAATGTTTAATCGCCGTTCACCACATCATCAAACACGGTACCTTCATCCTCCGTGATCAGCTCTCCGTTTACCCTTACACTGGTGGTAGAAACTACCTCAACCTCTCAAACTTCAGAGACAAAACAAGTTCAATATCTTGGGAACTCTCTTCTTGGGTTCGATGGTACGCGGAATACATTGAAAACCTTCTGTGTGCTTCTAGAACTCTTGGTTTCTTCCTTGGTGAAACGACGTCAGAGAAAGGAGTTTCTTATCTTACCAATAGTGATCTGTTAAGAGAAACTGATTCTTTGTTGGCCTTGATGGAAGGAATTGGGAAAAGACCTAATACTCCAATGAGTGAACAGAACAAGGTGGTTGTTGAGATAATGGATTTGGTGGAAGATGATGGGGATATGGTGATGAATGAAGTTTTGGTTAGAGTTAAAGAATTTGGGGAGAGGGAGAAACTTGGTTGTCTTGGTTTTGGAGAAGTGGTGGAATTGGTTTGTGTTTTGAAGAGATTGGAAATATGCAGAGAGAGAATGATGATGATGATGATGGAGGTGGTTGAGGAGAAGAAATTCTGGGATTTGGTGAGAGAATTGAAGGAAAAGGTTGGGAGGATGAAGGTGTATAGGGAAGAAGGGAGGCTTAGCAGTACGGTGACAAAAGACAGAAGAACCGAGTCTGATCGGTTTGATAACAGAGTTCTTAGGTCTGTTGATTCCATTAGGTTTCCTTCTTCAAGGTTCTTGTAA

Protein sequence

>Msa1357570

MKKLKEVIGIMKDKASQSKAAILSKRKTLFLLRATTHDSYNPPKHKHLLTLLSFGDGSRATASSAVELLMDRLQTTHNSAVALKCLIAVHHIIKHGTFILRDQLSVYPYTGGRNYLNLSNFRDKTSSISWELSSWVRWYAEYIENLLCASRTLGFFLGETTSEKGVSYLTNSDLLRETDSLLALMEGIGKRPNTPMSEQNKVVVEIMDLVEDDGDMVMNEVLVRVKEFGEREKLGCLGFGEVVELVCVLKRLEICRERMMMMMMEVVEEKKFWDLVRELKEKVGRMKVYREEGRLSSTVTKDRRTESDRFDNRVLRSVDSIRFPSSRFL*