AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0471700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0471700 MtrunA17_Chr3g0127151 97.934 242 3 1 1 242 1 240 5.36e-174 478
Msa0471700 MtrunA17_Chr5g0398981 31.250 128 81 2 119 241 97 222 4.84e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0471700 AT5G53490.3 62.151 251 85 3 1 242 1 250 1.28e-102 298
Msa0471700 AT5G53490.1 64.082 245 76 4 1 242 1 236 1.68e-102 297
Msa0471700 AT5G53490.2 64.082 245 75 4 1 242 1 235 1.69e-102 297
Msa0471700 AT5G53490.4 64.082 245 76 4 1 242 24 259 1.78e-102 298
Msa0471700 AT1G12250.2 30.723 166 106 4 81 241 5 166 2.33e-14 70.1
Msa0471700 AT1G12250.1 31.210 157 100 3 90 241 87 240 4.63e-14 70.5
Msa0471700 AT1G12250.3 33.333 105 65 1 142 241 1 105 3.09e-12 62.8

Find 71 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACATTTCAATTTACTTT+TGG 0.220928 3_3:-74091725 None:intergenic
CATTTGTGAAGTCACATTTC+CGG 0.250911 3_3:-74090568 None:intergenic
CAGACAGAGTCTTCCCCTTC+AGG 0.276167 3_3:-74090601 None:intergenic
TTGTATTTCTGCATATCTTT+TGG 0.289675 3_3:-74091540 None:intergenic
TGTTGGATCGTGTTAATTTC+GGG 0.294360 3_3:+74091401 Msa0471700:CDS
GTGTTGGATCGTGTTAATTT+CGG 0.299450 3_3:+74091400 Msa0471700:CDS
CACCTTTGACGATGCTAAAC+TGG 0.319451 3_3:+74091474 Msa0471700:CDS
TTTCGGGAAAGCAGATCTTC+AGG 0.327829 3_3:+74091417 Msa0471700:CDS
ATCTTCAGGGAGCTGTATTT+AGG 0.328541 3_3:+74091431 Msa0471700:CDS
CAAATTGAAGACATTAATAA+TGG 0.333640 3_3:+74091797 Msa0471700:three_prime_UTR
GAAGGCGAAGCTGAGTTAGA+TGG 0.362215 3_3:+74088548 Msa0471700:CDS
CGCTGCGAACGTGCATTTGT+TGG 0.372475 3_3:+74090497 Msa0471700:CDS
GCATTTGTTGGCAACACAAT+TGG 0.392635 3_3:+74090509 Msa0471700:CDS
CCCTTCACAATCACTTGCTC+TGG 0.411094 3_3:+74088422 Msa0471700:CDS
TCCCGTTACTGCTGCTACTC+AGG 0.417361 3_3:+74088664 Msa0471700:CDS
TGTCAAAGGCTTATGCAGTT+GGG 0.417381 3_3:+74090678 Msa0471700:CDS
AAATGCACGTTCGCAGCGAT+TGG 0.439609 3_3:-74090492 None:intergenic
TGTTGGCAACACAATTGGTC+AGG 0.445456 3_3:+74090514 Msa0471700:CDS
CATGTCAGCACCGTCAAACT+TGG 0.449162 3_3:-74090642 None:intergenic
ACCTGAGTAGCAGCAGTAAC+GGG 0.463670 3_3:-74088665 None:intergenic
AACACAATTGGTCAGGCAAA+TGG 0.475300 3_3:+74090521 Msa0471700:CDS
AGCTCGACCCTCGTCGCCGA+TGG 0.476213 3_3:-74091563 None:intergenic
GATTGGGCTCAGTTGACAAT+GGG 0.478708 3_3:-74090475 None:intergenic
CGGGAGTTGAATTGAAAGGT+TGG 0.482334 3_3:-74088336 None:intergenic
ACTTAGTCTCAACAAAATCA+AGG 0.488052 3_3:+74088592 Msa0471700:CDS
TTCGGGAAAGCAGATCTTCA+GGG 0.490270 3_3:+74091418 Msa0471700:CDS
TTTGGTTGAGTAGTTGCGTA+TGG 0.490995 3_3:-74088372 None:intergenic
ATGTCAGATGCCAAGTTTGA+CGG 0.493715 3_3:+74090632 Msa0471700:CDS
AATGCACGTTCGCAGCGATT+GGG 0.510575 3_3:-74090491 None:intergenic
CAGAGTCTTCCCCTTCAGGT+TGG 0.517528 3_3:-74090597 None:intergenic
ATGTCAAAGGCTTATGCAGT+TGG 0.517874 3_3:+74090677 Msa0471700:CDS
GTAGTTGCGTATGGACAAAC+TGG 0.517957 3_3:-74088363 None:intergenic
AGTGGTGAAACATGGTCGTT+TGG 0.528721 3_3:-74088390 None:intergenic
GTCAAAGGCTTATGCAGTTG+GGG 0.538436 3_3:+74090679 Msa0471700:CDS
AACCTGAGTAGCAGCAGTAA+CGG 0.539008 3_3:-74088666 None:intergenic
TTGAAGTGCAGAAAGAAGAA+TGG 0.545702 3_3:+74088313 Msa0471700:exon
TCCGCAGATAAGCAAGGGTG+TGG 0.547307 3_3:+74088258 None:intergenic
TTCGCGGGAGTTGAATTGAA+AGG 0.550681 3_3:-74088340 None:intergenic
ACGACAAAGCATTAGATCTC+CGG 0.559241 3_3:+74090549 Msa0471700:CDS
CAGTTTAGCATCGTCAAAGG+TGG 0.560849 3_3:-74091473 None:intergenic
TCTCTTGTAGTTGTAGGAGA+AGG 0.562555 3_3:+74088530 Msa0471700:intron
GACAGAAGTTGTAATGTCAA+AGG 0.563514 3_3:+74090664 Msa0471700:CDS
CGATTGGGCTCAGTTGACAA+TGG 0.568426 3_3:-74090476 None:intergenic
GGACTTCTCAAATGCAGTGT+TGG 0.574276 3_3:+74091384 Msa0471700:CDS
TTCCAGTTTAGCATCGTCAA+AGG 0.578875 3_3:-74091476 None:intergenic
TTGTTGAGACTAAGTAACCT+TGG 0.583587 3_3:-74088584 None:intergenic
ATAAGCTGCAAGAATACCAC+AGG 0.587978 3_3:-74088621 None:intergenic
TGTGAAGGGTGAAGCAGAAG+TGG 0.591249 3_3:-74088408 None:intergenic
CGTATGGACAAACTGGTTCG+CGG 0.591395 3_3:-74088356 None:intergenic
TATTTATCCGCAGATAAGCA+AGG 0.594777 3_3:+74088252 None:intergenic
GACGAGGGTCGAGCTGAGCT+AGG 0.596639 3_3:+74091571 Msa0471700:CDS
CTTAGTCTCAACAAAATCAA+GGG 0.599258 3_3:+74088593 Msa0471700:CDS
ATATGCAGAAATACAACCAT+CGG 0.602365 3_3:+74091547 Msa0471700:CDS
GTATGGACAAACTGGTTCGC+GGG 0.604115 3_3:-74088355 None:intergenic
TCTACTAGTTCTCCTCATCA+AGG 0.605342 3_3:-74091685 None:intergenic
CCAGAGCAAGTGATTGTGAA+GGG 0.619678 3_3:-74088422 None:intergenic
GAAGCAGAAGTGGTGAAACA+TGG 0.620884 3_3:-74088398 None:intergenic
AATACAACCATCGGCGACGA+GGG 0.628415 3_3:+74091556 Msa0471700:CDS
AAATACAACCATCGGCGACG+AGG 0.630860 3_3:+74091555 Msa0471700:CDS
ATTTATCCGCAGATAAGCAA+GGG 0.633440 3_3:+74088253 None:intergenic
TATATAAGAGTGCCTTGATG+AGG 0.637175 3_3:+74091673 Msa0471700:three_prime_UTR
TCCACACCCTTGCTTATCTG+CGG 0.639608 3_3:-74088259 None:intergenic
GAAATAATAAAACACTACAA+AGG 0.645557 3_3:-74091753 None:intergenic
AAAATCAAGGGTGTTGCCTG+TGG 0.646472 3_3:+74088605 Msa0471700:CDS
TTTGACGATGCTAAACTGGA+AGG 0.655477 3_3:+74091478 Msa0471700:CDS
ATTGGGCTCAGTTGACAATG+GGG 0.660543 3_3:-74090474 None:intergenic
TCAAAGGCTTATGCAGTTGG+GGG 0.667718 3_3:+74090680 Msa0471700:CDS
AGATAAGCAAGGGTGTGGAG+TGG 0.671399 3_3:+74088263 Msa0471700:five_prime_UTR
ACCAGAGCAAGTGATTGTGA+AGG 0.676454 3_3:-74088423 None:intergenic
TTGGGCTCAGTTGACAATGG+GGG 0.687518 3_3:-74090473 None:intergenic
ATGGAACTGAGAATAAACCA+AGG 0.746677 3_3:+74088567 Msa0471700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAATTAAAACATGTAATAT+AGG + chr3_3:74089255-74089274 Msa0471700:intron 15.0%
!! TGAAAAAACACAAAAAAATT+GGG - chr3_3:74090204-74090223 None:intergenic 15.0%
!! ATGAAAAAACACAAAAAAAT+TGG - chr3_3:74090205-74090224 None:intergenic 15.0%
!!! AAAACATTTCAATTTACTTT+TGG - chr3_3:74091728-74091747 None:intergenic 15.0%
!! ACAAACAAATTTAAATGTCT+TGG - chr3_3:74088510-74088529 None:intergenic 20.0%
!! AATGTATCTATAAATCCAAA+TGG + chr3_3:74089333-74089352 Msa0471700:intron 20.0%
!! TATGTATCTATAAATCCAAA+TGG + chr3_3:74089402-74089421 Msa0471700:intron 20.0%
!!! CTCCTTTTTTTTTTTTGAAA+CGG + chr3_3:74089620-74089639 Msa0471700:intron 20.0%
!!! TTAGATTGGATTATTAGTTT+TGG - chr3_3:74089901-74089920 None:intergenic 20.0%
!! AATGTATAGAAACATGTATT+TGG - chr3_3:74090786-74090805 None:intergenic 20.0%
!!! ATGAAGAATAACTTTTATGT+TGG + chr3_3:74090848-74090867 Msa0471700:intron 20.0%
!! AAACATTTACTAAACTTGAA+TGG + chr3_3:74090871-74090890 Msa0471700:intron 20.0%
!!! GCTTATTTTATCATAGAAAT+TGG + chr3_3:74091178-74091197 Msa0471700:intron 20.0%
!! TGATTCATACTAATACTATT+TGG + chr3_3:74091311-74091330 Msa0471700:intron 20.0%
!! GAAATAATAAAACACTACAA+AGG - chr3_3:74091756-74091775 None:intergenic 20.0%
!! CAAATTGAAGACATTAATAA+TGG + chr3_3:74091797-74091816 Msa0471700:three_prime_UTR 20.0%
!! AAGTGAGTGTTAATATTTTC+AGG - chr3_3:74088700-74088719 None:intergenic 25.0%
! AACAATCGTACAAGATTATT+AGG + chr3_3:74088793-74088812 Msa0471700:intron 25.0%
!! ATGATAGTACTGAACTTATT+AGG + chr3_3:74089031-74089050 Msa0471700:intron 25.0%
! TCAAAAAAAAAAAAGGAGCA+GGG - chr3_3:74089618-74089637 None:intergenic 25.0%
! TTCAAAAAAAAAAAAGGAGC+AGG - chr3_3:74089619-74089638 None:intergenic 25.0%
!! TGCCGTTTCAAAAAAAAAAA+AGG - chr3_3:74089625-74089644 None:intergenic 25.0%
!!! TTGGATTATTAGTTTTGGTT+TGG - chr3_3:74089896-74089915 None:intergenic 25.0%
! GGTTAGTAAGTTAATTAGAT+TGG - chr3_3:74089915-74089934 None:intergenic 25.0%
! ACTTCATCATTTCATTCAAA+TGG + chr3_3:74090049-74090068 Msa0471700:intron 25.0%
! AAAACACAAAAAAATTGGGT+TGG - chr3_3:74090200-74090219 None:intergenic 25.0%
!!! TTGTGTTTTTTCATTGTGAT+TGG + chr3_3:74090211-74090230 Msa0471700:intron 25.0%
! ATATTCAATACCAACCTAAA+TGG - chr3_3:74090307-74090326 None:intergenic 25.0%
!! TGATTTTGTACTAGTAAACA+AGG - chr3_3:74090721-74090740 None:intergenic 25.0%
! AATCAGAGGTAATTATTATC+AGG - chr3_3:74090923-74090942 None:intergenic 25.0%
! TGAAAGATGAATAAAATCAG+AGG - chr3_3:74090937-74090956 None:intergenic 25.0%
! TCCACTAACTACTATTAATA+AGG + chr3_3:74091138-74091157 Msa0471700:intron 25.0%
! CCACTAACTACTATTAATAA+GGG + chr3_3:74091139-74091158 Msa0471700:intron 25.0%
!!! TTGTATTTCTGCATATCTTT+TGG - chr3_3:74091543-74091562 None:intergenic 25.0%
! TCTTTCTGCACTTCAATTTT+TGG - chr3_3:74088309-74088328 None:intergenic 30.0%
ACTTAGTCTCAACAAAATCA+AGG + chr3_3:74088592-74088611 Msa0471700:CDS 30.0%
CTTAGTCTCAACAAAATCAA+GGG + chr3_3:74088593-74088612 Msa0471700:CDS 30.0%
ACTCAATGCAATCATTAGTT+AGG + chr3_3:74088723-74088742 Msa0471700:intron 30.0%
TTGAATTGTTTGTCCAAACT+GGG - chr3_3:74088825-74088844 None:intergenic 30.0%
! TGATCAGGAGAATTTTTCTT+TGG + chr3_3:74089195-74089214 Msa0471700:intron 30.0%
ACATGTAATATAGGACCAAA+TGG + chr3_3:74089264-74089283 Msa0471700:intron 30.0%
ACAAACTTGTCAAAACCATT+TGG - chr3_3:74089351-74089370 None:intergenic 30.0%
CAAAACTTGTCAAAACCATT+TGG - chr3_3:74089420-74089439 None:intergenic 30.0%
!!! CAAATGGTTTTGACAAGTTT+TGG + chr3_3:74089349-74089368 Msa0471700:intron 30.0%
AAACCAAATTGAGACAACAA+GGG - chr3_3:74089573-74089592 None:intergenic 30.0%
TAAACCAAATTGAGACAACA+AGG - chr3_3:74089574-74089593 None:intergenic 30.0%
AAATATTATTCATCGACGAG+AGG + chr3_3:74089644-74089663 Msa0471700:intron 30.0%
AATATTATTCATCGACGAGA+GGG + chr3_3:74089645-74089664 Msa0471700:intron 30.0%
! TTTTCACCCAAACTTGTAAT+AGG - chr3_3:74090006-74090025 None:intergenic 30.0%
! GAAGTAAATGTCTCTAAAGA+TGG - chr3_3:74090034-74090053 None:intergenic 30.0%
ATTTCATTCAAATGGTCGTT+CGG + chr3_3:74090057-74090076 Msa0471700:intron 30.0%
GTCATATTTCAAAGCTTAGA+AGG - chr3_3:74090111-74090130 None:intergenic 30.0%
AGAAAGACAATGAAAATCGT+AGG - chr3_3:74090133-74090152 None:intergenic 30.0%
! TACGATTTTCATTGTCTTTC+TGG + chr3_3:74090132-74090151 Msa0471700:intron 30.0%
! ACGATTTTCATTGTCTTTCT+GGG + chr3_3:74090133-74090152 Msa0471700:intron 30.0%
!!! TCATTTTTTGATCAAGCTCA+AGG + chr3_3:74090274-74090293 Msa0471700:intron 30.0%
! AAAGAAGTGTGAATCACATT+TGG - chr3_3:74090442-74090461 None:intergenic 30.0%
AAATGAAAAATCCAACCTGA+AGG + chr3_3:74090586-74090605 Msa0471700:CDS 30.0%
AATGAAAAATCCAACCTGAA+GGG + chr3_3:74090587-74090606 Msa0471700:CDS 30.0%
ATGTATTTGGTCATTCATGA+AGG - chr3_3:74090773-74090792 None:intergenic 30.0%
ATACATGGCATTCAACATAA+TGG - chr3_3:74091010-74091029 None:intergenic 30.0%
GACAAATGGAGTAATATACA+TGG - chr3_3:74091025-74091044 None:intergenic 30.0%
GACACTTAATAAGAGACAAA+TGG - chr3_3:74091039-74091058 None:intergenic 30.0%
CCCTTATTAATAGTAGTTAG+TGG - chr3_3:74091142-74091161 None:intergenic 30.0%
TGACAGAAGTCTCATATAAA+CGG - chr3_3:74091247-74091266 None:intergenic 30.0%
! ACTCAATTGTGATCTTTTAC+AGG + chr3_3:74091358-74091377 Msa0471700:intron 30.0%
ATATGCAGAAATACAACCAT+CGG + chr3_3:74091547-74091566 Msa0471700:CDS 30.0%
TTGAAGTGCAGAAAGAAGAA+TGG + chr3_3:74088313-74088332 Msa0471700:exon 35.0%
GTTTGTTCTCTTGTAGTTGT+AGG + chr3_3:74088524-74088543 Msa0471700:intron 35.0%
ATGGAACTGAGAATAAACCA+AGG + chr3_3:74088567-74088586 Msa0471700:CDS 35.0%
TTGTTGAGACTAAGTAACCT+TGG - chr3_3:74088587-74088606 None:intergenic 35.0%
CGTACAAGATTATTAGGCTA+AGG + chr3_3:74088799-74088818 Msa0471700:intron 35.0%
GTTGAATTGTTTGTCCAAAC+TGG - chr3_3:74088826-74088845 None:intergenic 35.0%
TCACAGTGCTATACTGAATA+AGG + chr3_3:74088930-74088949 Msa0471700:intron 35.0%
ACAGACTTGTCAAAACCATT+TGG - chr3_3:74089282-74089301 None:intergenic 35.0%
AAAAAAAAAGGAGCAGGGTT+AGG - chr3_3:74089613-74089632 None:intergenic 35.0%
!!! TAGTTTTGGTTTGGTTTGCT+GGG - chr3_3:74089887-74089906 None:intergenic 35.0%
!!! TTAGTTTTGGTTTGGTTTGC+TGG - chr3_3:74089888-74089907 None:intergenic 35.0%
TATGTTACTGTTAGTGGAGA+AGG - chr3_3:74089936-74089955 None:intergenic 35.0%
TAGGAAGCCTATTACAAGTT+TGG + chr3_3:74089996-74090015 Msa0471700:intron 35.0%
AGGAAGCCTATTACAAGTTT+GGG + chr3_3:74089997-74090016 Msa0471700:intron 35.0%
TTTCATTCAAATGGTCGTTC+GGG + chr3_3:74090058-74090077 Msa0471700:intron 35.0%
! CTCAAGGCAATTTTCCATTT+AGG + chr3_3:74090290-74090309 Msa0471700:intron 35.0%
! AGGCAATTTTCCATTTAGGT+TGG + chr3_3:74090294-74090313 Msa0471700:intron 35.0%
CATTTGTGAAGTCACATTTC+CGG - chr3_3:74090571-74090590 None:intergenic 35.0%
ATGAAAAATCCAACCTGAAG+GGG + chr3_3:74090588-74090607 Msa0471700:CDS 35.0%
GACAGAAGTTGTAATGTCAA+AGG + chr3_3:74090664-74090683 Msa0471700:CDS 35.0%
TTCTTACGATTCTAAACACC+TGG + chr3_3:74090804-74090823 Msa0471700:intron 35.0%
TATAAGTTTATACGTGCTCC+AGG - chr3_3:74090825-74090844 None:intergenic 35.0%
TATGAATCACAACTTCCAAG+TGG - chr3_3:74091300-74091319 None:intergenic 35.0%
TGAGTCAGTGTCTTGTAATA+TGG - chr3_3:74091343-74091362 None:intergenic 35.0%
! ATTGTGATCTTTTACAGGTG+TGG + chr3_3:74091363-74091382 Msa0471700:intron 35.0%
GTGTTGGATCGTGTTAATTT+CGG + chr3_3:74091400-74091419 Msa0471700:CDS 35.0%
TGTTGGATCGTGTTAATTTC+GGG + chr3_3:74091401-74091420 Msa0471700:CDS 35.0%
!! TTTAGGAACACAGTTTTGTC+AGG + chr3_3:74091448-74091467 Msa0471700:CDS 35.0%
!! GTTTTTGAGGACACTATCAT+TGG + chr3_3:74091505-74091524 Msa0471700:CDS 35.0%
!! TATATAAGAGTGCCTTGATG+AGG + chr3_3:74091673-74091692 Msa0471700:three_prime_UTR 35.0%
TTTGGTTGAGTAGTTGCGTA+TGG - chr3_3:74088375-74088394 None:intergenic 40.0%
TCTCTTGTAGTTGTAGGAGA+AGG + chr3_3:74088530-74088549 Msa0471700:intron 40.0%
ATAAGCTGCAAGAATACCAC+AGG - chr3_3:74088624-74088643 None:intergenic 40.0%
GTTCAATGAGACGCTTGATT+TGG + chr3_3:74088985-74089004 Msa0471700:intron 40.0%
TACTCTCAACATATGCACTC+AGG + chr3_3:74089096-74089115 Msa0471700:intron 40.0%
ACTCTCAACATATGCACTCA+GGG + chr3_3:74089097-74089116 Msa0471700:intron 40.0%
ATGTTAGCATGGAGAGAAAC+AGG - chr3_3:74089157-74089176 None:intergenic 40.0%
!! GTTTTGGCACTTGTCGTTAA+TGG + chr3_3:74089434-74089453 Msa0471700:intron 40.0%
TCGTTAATGGCAATTGTCTG+TGG + chr3_3:74089447-74089466 Msa0471700:intron 40.0%
CTTTCTTCTTCTACACCAGT+TGG - chr3_3:74089489-74089508 None:intergenic 40.0%
! GATCCCTTGTTGTCTCAATT+TGG + chr3_3:74089567-74089586 Msa0471700:intron 40.0%
TAGCGACAGAAATACAACAG+TGG + chr3_3:74089696-74089715 Msa0471700:intron 40.0%
ATACAACAGTGGCCGTATAT+AGG + chr3_3:74089707-74089726 Msa0471700:intron 40.0%
TATGACGCTGGGATATACTA+CGG + chr3_3:74089760-74089779 Msa0471700:intron 40.0%
!!! GTTGGTTTTCGCTTTGGTTT+TGG - chr3_3:74089837-74089856 None:intergenic 40.0%
!!! AGTTTTGGTTTGGTTTGCTG+GGG - chr3_3:74089886-74089905 None:intergenic 40.0%
GTCTGCTATGTTACTGTTAG+TGG - chr3_3:74089942-74089961 None:intergenic 40.0%
AACATAGCAGACCTAACACA+TGG + chr3_3:74089950-74089969 Msa0471700:intron 40.0%
TAACCAAACCCATGTGTAGA+GGG - chr3_3:74089978-74089997 None:intergenic 40.0%
GGTAAAATGTCAAGAGTCTG+AGG + chr3_3:74090079-74090098 Msa0471700:intron 40.0%
!! TTCATTGTCTTTCTGGGATC+TGG + chr3_3:74090139-74090158 Msa0471700:intron 40.0%
GTGTGAATCACATTTGGCTA+AGG - chr3_3:74090436-74090455 None:intergenic 40.0%
! GCATTTGTTGGCAACACAAT+TGG + chr3_3:74090509-74090528 Msa0471700:CDS 40.0%
AACACAATTGGTCAGGCAAA+TGG + chr3_3:74090521-74090540 Msa0471700:CDS 40.0%
! ACGACAAAGCATTAGATCTC+CGG + chr3_3:74090549-74090568 Msa0471700:CDS 40.0%
ATGTCAGATGCCAAGTTTGA+CGG + chr3_3:74090632-74090651 Msa0471700:CDS 40.0%
ATGTCAAAGGCTTATGCAGT+TGG + chr3_3:74090677-74090696 Msa0471700:CDS 40.0%
TGTCAAAGGCTTATGCAGTT+GGG + chr3_3:74090678-74090697 Msa0471700:CDS 40.0%
TCAACTGAGTCTGAATGTTG+AGG + chr3_3:74090738-74090757 Msa0471700:intron 40.0%
!! TTTGAAAGTGTTCAGCCACT+TGG + chr3_3:74091282-74091301 Msa0471700:intron 40.0%
ATCTTCAGGGAGCTGTATTT+AGG + chr3_3:74091431-74091450 Msa0471700:CDS 40.0%
TTCCAGTTTAGCATCGTCAA+AGG - chr3_3:74091479-74091498 None:intergenic 40.0%
TTTGACGATGCTAAACTGGA+AGG + chr3_3:74091478-74091497 Msa0471700:CDS 40.0%
! TCTACTAGTTCTCCTCATCA+AGG - chr3_3:74091688-74091707 None:intergenic 40.0%
CGGGAGTTGAATTGAAAGGT+TGG - chr3_3:74088339-74088358 None:intergenic 45.0%
TTCGCGGGAGTTGAATTGAA+AGG - chr3_3:74088343-74088362 None:intergenic 45.0%
GTAGTTGCGTATGGACAAAC+TGG - chr3_3:74088366-74088385 None:intergenic 45.0%
AGTGGTGAAACATGGTCGTT+TGG - chr3_3:74088393-74088412 None:intergenic 45.0%
GAAGCAGAAGTGGTGAAACA+TGG - chr3_3:74088401-74088420 None:intergenic 45.0%
CCAGAGCAAGTGATTGTGAA+GGG - chr3_3:74088425-74088444 None:intergenic 45.0%
ACCAGAGCAAGTGATTGTGA+AGG - chr3_3:74088426-74088445 None:intergenic 45.0%
!! AAAATCAAGGGTGTTGCCTG+TGG + chr3_3:74088605-74088624 Msa0471700:CDS 45.0%
AACCTGAGTAGCAGCAGTAA+CGG - chr3_3:74088669-74088688 None:intergenic 45.0%
TATTAGGCTAAGGCCCAGTT+TGG + chr3_3:74088809-74088828 Msa0471700:intron 45.0%
CTCTCAACATATGCACTCAG+GGG + chr3_3:74089098-74089117 Msa0471700:intron 45.0%
ACTCAGGGGAAGAGATCAAA+TGG + chr3_3:74089112-74089131 Msa0471700:intron 45.0%
CACTCGGTATCATGTTAGCA+TGG - chr3_3:74089168-74089187 None:intergenic 45.0%
TCCTGATCAACTGTGACACT+CGG - chr3_3:74089184-74089203 None:intergenic 45.0%
TGGCAATTGTCTGTGGAATG+TGG + chr3_3:74089454-74089473 Msa0471700:intron 45.0%
TGTCTGTGGAATGTGGTCAT+AGG + chr3_3:74089461-74089480 Msa0471700:intron 45.0%
ATGTGGTCATAGGAACCAAC+TGG + chr3_3:74089471-74089490 Msa0471700:intron 45.0%
AAAAGGAGCAGGGTTAGGAA+GGG - chr3_3:74089608-74089627 None:intergenic 45.0%
AAAAAGGAGCAGGGTTAGGA+AGG - chr3_3:74089609-74089628 None:intergenic 45.0%
TAAGACACTCCCAAAACTCG+CGG + chr3_3:74089670-74089689 Msa0471700:intron 45.0%
!! TCGCTATTTCCGCGAGTTTT+GGG - chr3_3:74089682-74089701 None:intergenic 45.0%
! TTTGGTGTGCCGCCTATATA+CGG - chr3_3:74089722-74089741 None:intergenic 45.0%
!! TTCGAGTGGTTTGGGTGTTT+TGG - chr3_3:74089740-74089759 None:intergenic 45.0%
GCGTCATATTCGAGTGGTTT+GGG - chr3_3:74089748-74089767 None:intergenic 45.0%
AGCGTCATATTCGAGTGGTT+TGG - chr3_3:74089749-74089768 None:intergenic 45.0%
AAACCACTCGAATATGACGC+TGG + chr3_3:74089748-74089767 Msa0471700:intron 45.0%
AACCACTCGAATATGACGCT+GGG + chr3_3:74089749-74089768 Msa0471700:intron 45.0%
AACCAAACCCATGTGTAGAG+GGG - chr3_3:74089977-74089996 None:intergenic 45.0%
CTAACCAAACCCATGTGTAG+AGG - chr3_3:74089979-74089998 None:intergenic 45.0%
! CTCTACACATGGGTTTGGTT+AGG + chr3_3:74089977-74089996 Msa0471700:intron 45.0%
! GGTCTTGTACTAGGAAGTCT+CGG + chr3_3:74090160-74090179 Msa0471700:intron 45.0%
ATTGGGCTCAGTTGACAATG+GGG - chr3_3:74090477-74090496 None:intergenic 45.0%
GATTGGGCTCAGTTGACAAT+GGG - chr3_3:74090478-74090497 None:intergenic 45.0%
TGTTGGCAACACAATTGGTC+AGG + chr3_3:74090514-74090533 Msa0471700:CDS 45.0%
GTCAAAGGCTTATGCAGTTG+GGG + chr3_3:74090679-74090698 Msa0471700:CDS 45.0%
TCAAAGGCTTATGCAGTTGG+GGG + chr3_3:74090680-74090699 Msa0471700:CDS 45.0%
GGACTTCTCAAATGCAGTGT+TGG + chr3_3:74091384-74091403 Msa0471700:CDS 45.0%
TTTCGGGAAAGCAGATCTTC+AGG + chr3_3:74091417-74091436 Msa0471700:CDS 45.0%
TTCGGGAAAGCAGATCTTCA+GGG + chr3_3:74091418-74091437 Msa0471700:CDS 45.0%
CAGTTTAGCATCGTCAAAGG+TGG - chr3_3:74091476-74091495 None:intergenic 45.0%
CACCTTTGACGATGCTAAAC+TGG + chr3_3:74091474-74091493 Msa0471700:CDS 45.0%
!! ACTGGAAGGTGCAGTTTTTG+AGG + chr3_3:74091492-74091511 Msa0471700:CDS 45.0%
TCCACACCCTTGCTTATCTG+CGG - chr3_3:74088262-74088281 None:intergenic 50.0%
! AGATAAGCAAGGGTGTGGAG+TGG + chr3_3:74088263-74088282 Msa0471700:five_prime_UTR 50.0%
!! GTATGGACAAACTGGTTCGC+GGG - chr3_3:74088358-74088377 None:intergenic 50.0%
!! CGTATGGACAAACTGGTTCG+CGG - chr3_3:74088359-74088378 None:intergenic 50.0%
TGTGAAGGGTGAAGCAGAAG+TGG - chr3_3:74088411-74088430 None:intergenic 50.0%
CCCTTCACAATCACTTGCTC+TGG + chr3_3:74088422-74088441 Msa0471700:CDS 50.0%
GAAGGCGAAGCTGAGTTAGA+TGG + chr3_3:74088548-74088567 Msa0471700:CDS 50.0%
ACCTGAGTAGCAGCAGTAAC+GGG - chr3_3:74088668-74088687 None:intergenic 50.0%
ACCGAGTGTCACAGTTGATC+AGG + chr3_3:74089180-74089199 Msa0471700:intron 50.0%
!! GTCGCTATTTCCGCGAGTTT+TGG - chr3_3:74089683-74089702 None:intergenic 50.0%
CAACAGTGGCCGTATATAGG+CGG + chr3_3:74089710-74089729 Msa0471700:intron 50.0%
ATCCCAGCGTCATATTCGAG+TGG - chr3_3:74089754-74089773 None:intergenic 50.0%
!!! TCGCTTTGGTTTTGGCTCCT+GGG - chr3_3:74089829-74089848 None:intergenic 50.0%
!!! TTCGCTTTGGTTTTGGCTCC+TGG - chr3_3:74089830-74089849 None:intergenic 50.0%
!!! GCAGTGGTTGGTTTTCGCTT+TGG - chr3_3:74089843-74089862 None:intergenic 50.0%
AAGCGAAAACCAACCACTGC+AGG + chr3_3:74089843-74089862 Msa0471700:intron 50.0%
AGCGAAAACCAACCACTGCA+GGG + chr3_3:74089844-74089863 Msa0471700:intron 50.0%
!! TTTTTAGGCCCTGCAGTGGT+TGG - chr3_3:74089855-74089874 None:intergenic 50.0%
TGTAGAGGGGACCATGTGTT+AGG - chr3_3:74089964-74089983 None:intergenic 50.0%
ACATGGTCCCCTCTACACAT+GGG + chr3_3:74089967-74089986 Msa0471700:intron 50.0%
!! CTGGGATCTGGTCTTGTACT+AGG + chr3_3:74090151-74090170 Msa0471700:intron 50.0%
TTGGGCTCAGTTGACAATGG+GGG - chr3_3:74090476-74090495 None:intergenic 50.0%
CGATTGGGCTCAGTTGACAA+TGG - chr3_3:74090479-74090498 None:intergenic 50.0%
AATGCACGTTCGCAGCGATT+GGG - chr3_3:74090494-74090513 None:intergenic 50.0%
AAATGCACGTTCGCAGCGAT+TGG - chr3_3:74090495-74090514 None:intergenic 50.0%
CATGTCAGCACCGTCAAACT+TGG - chr3_3:74090645-74090664 None:intergenic 50.0%
AAATACAACCATCGGCGACG+AGG + chr3_3:74091555-74091574 Msa0471700:CDS 50.0%
AATACAACCATCGGCGACGA+GGG + chr3_3:74091556-74091575 Msa0471700:CDS 50.0%
TCCCGTTACTGCTGCTACTC+AGG + chr3_3:74088664-74088683 Msa0471700:CDS 55.0%
!!! GGTGTTTTTAGGCCCTGCAG+TGG - chr3_3:74089859-74089878 None:intergenic 55.0%
! GCTGGGGCTCAGGTGTTTTT+AGG - chr3_3:74089870-74089889 None:intergenic 55.0%
CACATGGTCCCCTCTACACA+TGG + chr3_3:74089966-74089985 Msa0471700:intron 55.0%
GTCCCCTCTACACATGGGTT+TGG + chr3_3:74089972-74089991 Msa0471700:intron 55.0%
CGCTGCGAACGTGCATTTGT+TGG + chr3_3:74090497-74090516 Msa0471700:CDS 55.0%
CAGAGTCTTCCCCTTCAGGT+TGG - chr3_3:74090600-74090619 None:intergenic 55.0%
CAGACAGAGTCTTCCCCTTC+AGG - chr3_3:74090604-74090623 None:intergenic 55.0%
! GCAGTTGGGGGCAGCTTTAA+AGG + chr3_3:74090692-74090711 Msa0471700:CDS 55.0%
! ACGCAGAGGTATGCTGCTGC+TGG - chr3_3:74089793-74089812 None:intergenic 60.0%
!! GGTTTGGTTTGCTGGGGCTC+AGG - chr3_3:74089880-74089899 None:intergenic 60.0%
!! GACGCTCGTTGGTGACGCAG+AGG - chr3_3:74089807-74089826 None:intergenic 65.0%
TTGGCTCCTGGGACGCTCGT+TGG - chr3_3:74089818-74089837 None:intergenic 65.0%
GACGAGGGTCGAGCTGAGCT+AGG + chr3_3:74091571-74091590 Msa0471700:CDS 65.0%
GCGTCACCAACGAGCGTCCC+AGG + chr3_3:74089809-74089828 Msa0471700:intron 70.0%
AGCTCGACCCTCGTCGCCGA+TGG - chr3_3:74091566-74091585 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 74088259 74091882 74088259 ID=Msa0471700;Name=Msa0471700
chr3_3 mRNA 74088259 74091882 74088259 ID=Msa0471700-mRNA-1;Parent=Msa0471700;Name=Msa0471700-mRNA-1;_AED=0.13;_eAED=0.13;_QI=73|1|1|1|1|1|4|279|242
chr3_3 exon 74088259 74088443 74088259 ID=Msa0471700-mRNA-1:exon:18898;Parent=Msa0471700-mRNA-1
chr3_3 exon 74088540 74088685 74088540 ID=Msa0471700-mRNA-1:exon:18899;Parent=Msa0471700-mRNA-1
chr3_3 exon 74090467 74090713 74090467 ID=Msa0471700-mRNA-1:exon:18900;Parent=Msa0471700-mRNA-1
chr3_3 exon 74091380 74091882 74091380 ID=Msa0471700-mRNA-1:exon:18901;Parent=Msa0471700-mRNA-1
chr3_3 five_prime_UTR 74088259 74088331 74088259 ID=Msa0471700-mRNA-1:five_prime_utr;Parent=Msa0471700-mRNA-1
chr3_3 CDS 74088332 74088443 74088332 ID=Msa0471700-mRNA-1:cds;Parent=Msa0471700-mRNA-1
chr3_3 CDS 74088540 74088685 74088540 ID=Msa0471700-mRNA-1:cds;Parent=Msa0471700-mRNA-1
chr3_3 CDS 74090467 74090713 74090467 ID=Msa0471700-mRNA-1:cds;Parent=Msa0471700-mRNA-1
chr3_3 CDS 74091380 74091603 74091380 ID=Msa0471700-mRNA-1:cds;Parent=Msa0471700-mRNA-1
chr3_3 three_prime_UTR 74091604 74091882 74091604 ID=Msa0471700-mRNA-1:three_prime_utr;Parent=Msa0471700-mRNA-1
Gene Sequence

>Msa0471700

ATGGCCAACCTTTCAATTCAACTCCCGCGAACCAGTTTGTCCATACGCAACTACTCAACCAAACGACCATGTTTCACCACTTCTGCTTCACCCTTCACAATCACTTGCTCTGTTGTAGGAGAAGGCGAAGCTGAGTTAGATGGAACTGAGAATAAACCAAGGTTACTTAGTCTCAACAAAATCAAGGGTGTTGCCTGTGGTATTCTTGCAGCTTATGCTGTTACTTCTGCTTCATTTCCCGTTACTGCTGCTACTCAGAGACTGCCCCCATTGTCAACTGAGCCCAATCGCTGCGAACGTGCATTTGTTGGCAACACAATTGGTCAGGCAAATGGTGTGTACGACAAAGCATTAGATCTCCGGAAATGTGACTTCACAAATGAAAAATCCAACCTGAAGGGGAAGACTCTGTCTGCAGCACTAATGTCAGATGCCAAGTTTGACGGTGCTGACATGACAGAAGTTGTAATGTCAAAGGCTTATGCAGTTGGGGGCAGCTTTAAAGGTGTGGACTTCTCAAATGCAGTGTTGGATCGTGTTAATTTCGGGAAAGCAGATCTTCAGGGAGCTGTATTTAGGAACACAGTTTTGTCAGGCTCCACCTTTGACGATGCTAAACTGGAAGGTGCAGTTTTTGAGGACACTATCATTGGTTACATTGATCTCCAAAAGATATGCAGAAATACAACCATCGGCGACGAGGGTCGAGCTGAGCTAGGATGTCGATGA

Protein sequence

>Msa0471700

MANLSIQLPRTSLSIRNYSTKRPCFTTSASPFTITCSVVGEGEAELDGTENKPRLLSLNKIKGVACGILAAYAVTSASFPVTAATQRLPPLSTEPNRCERAFVGNTIGQANGVYDKALDLRKCDFTNEKSNLKGKTLSAALMSDAKFDGADMTEVVMSKAYAVGGSFKGVDFSNAVLDRVNFGKADLQGAVFRNTVLSGSTFDDAKLEGAVFEDTIIGYIDLQKICRNTTIGDEGRAELGCR*