AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0555940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0555940 MtrunA17_Chr8g0382151 94.771 153 8 0 1 153 1 153 3.50e-89 258
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0555940 AT5G65220.1 60.510 157 57 2 1 152 1 157 3.24e-56 174

Find 49 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTCACTGCCTTCAAATT+AGG 0.189849 4_1:+53960838 Msa0555940:three_prime_UTR
CTCCGTCTTTAGTGAAGCTT+CGG 0.316925 4_1:+53960570 Msa0555940:CDS
AGGATGAAGTGAAGTAAGAT+AGG 0.359503 4_1:+53957745 Msa0555940:five_prime_UTR
CGAAGAGGTTGTTGACCTTA+AGG 0.368840 4_1:+53958061 Msa0555940:CDS
AGAGAGATCGAGGAGGGTAT+TGG 0.373075 4_1:+53960488 Msa0555940:CDS
CCTATGTTCTTCCTGTCATA+AGG 0.377714 4_1:+53960759 Msa0555940:three_prime_UTR
GAAGAGGTTGTTGACCTTAA+GGG 0.407443 4_1:+53958062 Msa0555940:CDS
AACCTCTTCGTTGATTTGTT+CGG 0.413592 4_1:-53958048 None:intergenic
TCCGTCTTTAGTGAAGCTTC+GGG 0.421679 4_1:+53960571 Msa0555940:CDS
GAAGAGGTGTGTTTCGTCGC+TGG 0.429164 4_1:-53957963 None:intergenic
TAACCATGTCTCTATTCTTA+CGG 0.436101 4_1:-53960806 None:intergenic
AAAATGATTACCTAATTTGA+AGG 0.439015 4_1:-53960848 None:intergenic
CAATTCAAAACCTCCTTCAA+TGG 0.450472 4_1:+53957906 Msa0555940:CDS
GCTGGAATTGTGCACGTGTT+TGG 0.452104 4_1:-53957945 None:intergenic
AGAAGCCGCTGAAGCTGAAA+AGG 0.454847 4_1:+53960610 Msa0555940:CDS
GCTGAAAAGGCTGCATGAGC+TGG 0.463787 4_1:+53960623 Msa0555940:exon
AAGAGGAGTTGCGCTCATAA+AGG 0.464581 4_1:+53957725 Msa0555940:five_prime_UTR
TCGAGGAGGGTATTGGTAAG+AGG 0.464624 4_1:+53960495 Msa0555940:CDS
CTCTTCGTTGATTTGTTCGG+TGG 0.475609 4_1:-53958045 None:intergenic
TTTAGTGAAGCTTCGGGAGG+AGG 0.477310 4_1:+53960577 Msa0555940:CDS
TTCGGTCTCAGTTGTGATGA+TGG 0.483279 4_1:+53957983 Msa0555940:CDS
GCATGAGCAACTCTCCCTTA+AGG 0.500570 4_1:-53958076 None:intergenic
AAGTGAAGTAAGATAGGGTG+TGG 0.502314 4_1:+53957751 Msa0555940:five_prime_UTR
ACGCATGCGACGGAAATCAC+TGG 0.508419 4_1:-53958135 None:intergenic
AGCGACGAAACACACCTCTT+CGG 0.509558 4_1:+53957965 Msa0555940:CDS
GAAAGTGTTGAAGAAGAAGA+AGG 0.513832 4_1:-53957864 None:intergenic
AGAAGAAGAAGGTGAAGTAA+CGG 0.515793 4_1:-53957853 None:intergenic
GGATGAAGTGAAGTAAGATA+GGG 0.523185 4_1:+53957746 Msa0555940:five_prime_UTR
CATTACGAGCGGATTTCTGA+AGG 0.525516 4_1:-53958103 None:intergenic
TCGCTTGCTTACTGTAAAGC+GGG 0.534202 4_1:+53960463 Msa0555940:CDS
ACGTAGACGAATGCCATTGA+AGG 0.534298 4_1:-53957919 None:intergenic
TTTCCGTCGCATGCGTAAGA+CGG 0.562303 4_1:+53958142 Msa0555940:CDS
CTCGCTTGCTTACTGTAAAG+CGG 0.564676 4_1:+53960462 Msa0555940:CDS
TCCCGAAGCTTCACTAAAGA+CGG 0.568374 4_1:-53960572 None:intergenic
AGCTTCACTAAAGACGGAGG+TGG 0.580530 4_1:-53960566 None:intergenic
CCTTATGACAGGAAGAACAT+AGG 0.601321 4_1:-53960759 None:intergenic
TAGACGAATGCCATTGAAGG+AGG 0.601615 4_1:-53957916 None:intergenic
GTCTTTAGTGAAGCTTCGGG+AGG 0.606896 4_1:+53960574 Msa0555940:CDS
CGGGAAAGAGAGATCGAGGA+GGG 0.618037 4_1:+53960482 Msa0555940:CDS
CACCGAACAAATCAACGAAG+AGG 0.638523 4_1:+53958046 Msa0555940:CDS
AAAGCGGGAAAGAGAGATCG+AGG 0.640382 4_1:+53960478 Msa0555940:CDS
AGATAAAACATAAGAGAGCG+CGG 0.644926 4_1:+53957810 Msa0555940:five_prime_UTR
ATACCGTCTTACGCATGCGA+CGG 0.651580 4_1:-53958145 None:intergenic
GGACTTAAACTCATTACGAG+CGG 0.659914 4_1:-53958114 None:intergenic
CATCACAACTGAGACCGAAG+AGG 0.669119 4_1:-53957979 None:intergenic
GCGGGAAAGAGAGATCGAGG+AGG 0.693334 4_1:+53960481 Msa0555940:CDS
CGAAGCTTCACTAAAGACGG+AGG 0.698716 4_1:-53960569 None:intergenic
TAACCGTAAGAATAGAGACA+TGG 0.704669 4_1:+53960803 Msa0555940:three_prime_UTR
AAGAAGGTGAAGTAACGGAG+AGG 0.716426 4_1:-53957848 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAACTAAAAATAAATG+GGG - chr4_1:53960340-53960359 None:intergenic 10.0%
!!! ATTTGCTTAATTAAATTTTG+AGG + chr4_1:53958231-53958250 Msa0555940:intron 15.0%
!! AAAAAAGCAATATAATGAAA+AGG - chr4_1:53959559-53959578 None:intergenic 15.0%
!! TTAAAACTAAAAATAAATGG+GGG - chr4_1:53960339-53960358 None:intergenic 15.0%
!!! ATCTGAAGTTATTATTATTA+GGG - chr4_1:53960367-53960386 None:intergenic 15.0%
!! ACAATATTCAAAATTGTCAA+GGG + chr4_1:53958594-53958613 Msa0555940:intron 20.0%
!!! TCTTAAGTTTGAATCTTTTA+TGG + chr4_1:53959088-53959107 Msa0555940:intron 20.0%
!! ATAATCTAATCCAATGTAAA+CGG + chr4_1:53959222-53959241 Msa0555940:intron 20.0%
!!! TATCTTTTACTTTAGTTGTT+TGG + chr4_1:53959395-53959414 Msa0555940:intron 20.0%
!!! ACAACAATTGAATTTTATTG+TGG - chr4_1:53959639-53959658 None:intergenic 20.0%
!! ACAATAAAATTCAATTGTTG+TGG + chr4_1:53959638-53959657 Msa0555940:intron 20.0%
!! ATCAGAACTGAAATTTAAAT+TGG + chr4_1:53959720-53959739 Msa0555940:intron 20.0%
!!! CTAATTTTTTTTTTCCGTTT+CGG - chr4_1:53959831-53959850 None:intergenic 20.0%
!!! TCAATTCAATTTTTATTGGT+GGG - chr4_1:53960176-53960195 None:intergenic 20.0%
!!! CATCTGAAGTTATTATTATT+AGG - chr4_1:53960368-53960387 None:intergenic 20.0%
!!! AGTCATTGTTTTTAATGTTT+TGG + chr4_1:53960693-53960712 Msa0555940:three_prime_UTR 20.0%
!! AAAATGATTACCTAATTTGA+AGG - chr4_1:53960851-53960870 None:intergenic 20.0%
!!! GTTTTGAATTGTAATGGTTT+TGG - chr4_1:53957897-53957916 None:intergenic 25.0%
! CTCTACTAATGTATTAAGAT+TGG - chr4_1:53958301-53958320 None:intergenic 25.0%
! TCTTAATACATTAGTAGAGT+TGG + chr4_1:53958302-53958321 Msa0555940:intron 25.0%
! CTTAATACATTAGTAGAGTT+GGG + chr4_1:53958303-53958322 Msa0555940:intron 25.0%
! TTAATACATTAGTAGAGTTG+GGG + chr4_1:53958304-53958323 Msa0555940:intron 25.0%
! TGTGAAATTAGGAATGAATA+GGG + chr4_1:53958338-53958357 Msa0555940:intron 25.0%
! TTGTAATTGTCATTGTTCTA+TGG + chr4_1:53958424-53958443 Msa0555940:intron 25.0%
! CACAATATTCAAAATTGTCA+AGG + chr4_1:53958593-53958612 Msa0555940:intron 25.0%
! CAATATTCAAAATTGTCAAG+GGG + chr4_1:53958595-53958614 Msa0555940:intron 25.0%
! GAAATATTGCTATGTTAGAA+TGG + chr4_1:53958623-53958642 Msa0555940:intron 25.0%
! ACACCAAAAATAATGCAAAT+GGG - chr4_1:53958689-53958708 None:intergenic 25.0%
! TGTCTATTATACCAAACTTA+GGG + chr4_1:53958706-53958725 Msa0555940:intron 25.0%
!! TTCAAATTTTACCCTAAGTT+TGG - chr4_1:53958720-53958739 None:intergenic 25.0%
! AAACTTAGGGTAAAATTTGA+AGG + chr4_1:53958719-53958738 Msa0555940:intron 25.0%
! GAAATGAACATTGAAATGAA+AGG + chr4_1:53958770-53958789 Msa0555940:intron 25.0%
!! TATTAGCACTTGTTAACAAA+TGG - chr4_1:53959171-53959190 None:intergenic 25.0%
!! TTTCAGTTTTCTTTCTTCTT+TGG - chr4_1:53959307-53959326 None:intergenic 25.0%
! AAGAAGAAAGAAAACTGAAA+AGG + chr4_1:53959307-53959326 Msa0555940:intron 25.0%
! ATACAAATGAGTGTAAGAAT+AGG - chr4_1:53959473-53959492 None:intergenic 25.0%
! AACATCCATGAAAATAGAAA+AGG - chr4_1:53959664-53959683 None:intergenic 25.0%
! CGAAACGGAAAAAAAAAATT+AGG + chr4_1:53959829-53959848 Msa0555940:intron 25.0%
! AACTCTGATAAAATGATGAT+GGG - chr4_1:53960148-53960167 None:intergenic 25.0%
!! CTCAATTCAATTTTTATTGG+TGG - chr4_1:53960177-53960196 None:intergenic 25.0%
! CACCAATAAAAATTGAATTG+AGG + chr4_1:53960175-53960194 Msa0555940:intron 25.0%
!! CTCCTCAATTCAATTTTTAT+TGG - chr4_1:53960180-53960199 None:intergenic 25.0%
! AAAAATTGAATTGAGGAGAA+TGG + chr4_1:53960182-53960201 Msa0555940:intron 25.0%
! AAAATTGAATTGAGGAGAAT+GGG + chr4_1:53960183-53960202 Msa0555940:intron 25.0%
!! TTTAGAATGTTTAGATTCCA+TGG + chr4_1:53960249-53960268 Msa0555940:intron 25.0%
! AAATGCACACAATAGAAAAA+GGG + chr4_1:53960282-53960301 Msa0555940:intron 25.0%
!!! CATTGTTTTTAATGTTTTGG+TGG + chr4_1:53960696-53960715 Msa0555940:three_prime_UTR 25.0%
!!! TTGTAATGGTTTTGGAAGAA+AGG - chr4_1:53957889-53957908 None:intergenic 30.0%
!!! AAGGAGGTTTTGAATTGTAA+TGG - chr4_1:53957903-53957922 None:intergenic 30.0%
TAATACATTAGTAGAGTTGG+GGG + chr4_1:53958305-53958324 Msa0555940:intron 30.0%
CTGTGAAATTAGGAATGAAT+AGG + chr4_1:53958337-53958356 Msa0555940:intron 30.0%
!!! AGTCTTTGGTTTTGTGTATT+TGG - chr4_1:53958522-53958541 None:intergenic 30.0%
TTGCTATGTTAGAATGGAAA+TGG + chr4_1:53958629-53958648 Msa0555940:intron 30.0%
! CATCCCATTTGCATTATTTT+TGG + chr4_1:53958683-53958702 Msa0555940:intron 30.0%
GACACCAAAAATAATGCAAA+TGG - chr4_1:53958690-53958709 None:intergenic 30.0%
GTGTCTATTATACCAAACTT+AGG + chr4_1:53958705-53958724 Msa0555940:intron 30.0%
TAGTTGTTACTCATGTATTG+CGG + chr4_1:53958855-53958874 Msa0555940:intron 30.0%
!!! ACTTTTCAGGTATGGTATTT+CGG - chr4_1:53958929-53958948 None:intergenic 30.0%
ATTGAAATTGAACTGAAACC+AGG - chr4_1:53959003-53959022 None:intergenic 30.0%
ATTTCAATCAACCAATACGA+TGG + chr4_1:53959015-53959034 Msa0555940:intron 30.0%
ACATAGATTAAATCCATTGC+CGG + chr4_1:53959064-53959083 Msa0555940:intron 30.0%
AAAGATTCAAACTTAAGACC+CGG - chr4_1:53959086-53959105 None:intergenic 30.0%
! TCAGTTATTTCCGTTTACAT+TGG - chr4_1:53959235-53959254 None:intergenic 30.0%
AAATAACTGAACTGAAAACC+AGG + chr4_1:53959245-53959264 Msa0555940:intron 30.0%
! TTTTATTGTCCTCTGTTTTG+GGG - chr4_1:53959281-53959300 None:intergenic 30.0%
!! GTTTTATTGTCCTCTGTTTT+GGG - chr4_1:53959282-53959301 None:intergenic 30.0%
!!! AGTTTTATTGTCCTCTGTTT+TGG - chr4_1:53959283-53959302 None:intergenic 30.0%
! AAACTGAAAAGGTCAAGTTT+TGG + chr4_1:53959318-53959337 Msa0555940:intron 30.0%
ACTGAAACAAAGAATAAAGG+TGG - chr4_1:53959536-53959555 None:intergenic 30.0%
AGGACTGAAACAAAGAATAA+AGG - chr4_1:53959539-53959558 None:intergenic 30.0%
! TGAGTAAATCGTGATTTTGA+TGG - chr4_1:53959584-53959603 None:intergenic 30.0%
AGGAGATTAATCTATTATGC+TGG - chr4_1:53960012-53960031 None:intergenic 30.0%
ATAGTAAAGCAAACTGAAGT+AGG - chr4_1:53960071-53960090 None:intergenic 30.0%
GAACTCTGATAAAATGATGA+TGG - chr4_1:53960149-53960168 None:intergenic 30.0%
ATGTTTAGATTCCATGGTAA+AGG + chr4_1:53960255-53960274 Msa0555940:intron 30.0%
GAAATGCACACAATAGAAAA+AGG + chr4_1:53960281-53960300 Msa0555940:intron 30.0%
AATGCACACAATAGAAAAAG+GGG + chr4_1:53960283-53960302 Msa0555940:intron 30.0%
AAACTAAAAATAAATGGGGG+TGG - chr4_1:53960336-53960355 None:intergenic 30.0%
!!! CCATTTTTTATCAAGCTTTC+TGG - chr4_1:53960525-53960544 None:intergenic 30.0%
CCAGAAAGCTTGATAAAAAA+TGG + chr4_1:53960522-53960541 Msa0555940:CDS 30.0%
GACATAAAAAACCTTATGAC+AGG - chr4_1:53960773-53960792 None:intergenic 30.0%
TAACCATGTCTCTATTCTTA+CGG - chr4_1:53960809-53960828 None:intergenic 30.0%
AGGATGAAGTGAAGTAAGAT+AGG + chr4_1:53957745-53957764 Msa0555940:five_prime_UTR 35.0%
GGATGAAGTGAAGTAAGATA+GGG + chr4_1:53957746-53957765 Msa0555940:five_prime_UTR 35.0%
AGATAAAACATAAGAGAGCG+CGG + chr4_1:53957810-53957829 Msa0555940:five_prime_UTR 35.0%
AGAAGAAGAAGGTGAAGTAA+CGG - chr4_1:53957856-53957875 None:intergenic 35.0%
!! GAAAGTGTTGAAGAAGAAGA+AGG - chr4_1:53957867-53957886 None:intergenic 35.0%
CAATTCAAAACCTCCTTCAA+TGG + chr4_1:53957906-53957925 Msa0555940:CDS 35.0%
!! AACCTCTTCGTTGATTTGTT+CGG - chr4_1:53958051-53958070 None:intergenic 35.0%
GAATGAGAGTCTGTGAAATT+AGG + chr4_1:53958327-53958346 Msa0555940:intron 35.0%
GGTTATGTTAGAGAAACAAC+TGG + chr4_1:53958445-53958464 Msa0555940:intron 35.0%
ACAAAACCAAAGACTCACTA+GGG + chr4_1:53958527-53958546 Msa0555940:intron 35.0%
GTGTGTAATATGTAAGTCAC+AGG - chr4_1:53958576-53958595 None:intergenic 35.0%
TAGAATGGAAATGGAGAGAA+AGG + chr4_1:53958638-53958657 Msa0555940:intron 35.0%
TGCAAATGGGATGTAGATAT+AGG - chr4_1:53958676-53958695 None:intergenic 35.0%
!! AAGGCATCAGGATTTTTATC+TGG + chr4_1:53958738-53958757 Msa0555940:intron 35.0%
AACATTGAAATGAAAGGCCA+AGG + chr4_1:53958776-53958795 Msa0555940:intron 35.0%
ACATTGAAATGAAAGGCCAA+GGG + chr4_1:53958777-53958796 Msa0555940:intron 35.0%
GTTAACGAATTTGAATCCCT+TGG - chr4_1:53958796-53958815 None:intergenic 35.0%
!! ATTTCAGGTATGGTGTTTTC+TGG - chr4_1:53958896-53958915 None:intergenic 35.0%
AGAAAACACCATACCTGAAA+TGG + chr4_1:53958895-53958914 Msa0555940:intron 35.0%
GAAAACACCATACCTGAAAT+GGG + chr4_1:53958896-53958915 Msa0555940:intron 35.0%
AAAACACCATACCTGAAATG+GGG + chr4_1:53958897-53958916 Msa0555940:intron 35.0%
!!! CTTTTCAGGTATGGTATTTC+GGG - chr4_1:53958928-53958947 None:intergenic 35.0%
GAAATACCATACCTGAAAAG+TGG + chr4_1:53958928-53958947 Msa0555940:intron 35.0%
CATAGATTAAATCCATTGCC+GGG + chr4_1:53959065-53959084 Msa0555940:intron 35.0%
!! GTCCTCATTCTTTAGAGTTT+AGG + chr4_1:53959117-53959136 Msa0555940:intron 35.0%
! GACCTAAACTCTAAAGAATG+AGG - chr4_1:53959122-53959141 None:intergenic 35.0%
!! CTTTAGAGTTTAGGTCTTTG+AGG + chr4_1:53959126-53959145 Msa0555940:intron 35.0%
TGCTAATAGCTAACATAGCT+TGG + chr4_1:53959183-53959202 Msa0555940:intron 35.0%
GCTAATAGCTAACATAGCTT+GGG + chr4_1:53959184-53959203 Msa0555940:intron 35.0%
CTAATAGCTAACATAGCTTG+GGG + chr4_1:53959185-53959204 Msa0555940:intron 35.0%
! TGCAGCTAGTTTATGAAGAA+AGG - chr4_1:53959374-53959393 None:intergenic 35.0%
! TGTGGCCTTTTCTATTTTCA+TGG + chr4_1:53959656-53959675 Msa0555940:intron 35.0%
ACACTTGTCTACTGTTATCT+GGG - chr4_1:53959799-53959818 None:intergenic 35.0%
TACACTTGTCTACTGTTATC+TGG - chr4_1:53959800-53959819 None:intergenic 35.0%
AGATAACAGTAGACAAGTGT+AGG + chr4_1:53959799-53959818 Msa0555940:intron 35.0%
GATAACAGTAGACAAGTGTA+GGG + chr4_1:53959800-53959819 Msa0555940:intron 35.0%
AAATCACTTGAGCATTTGTG+GGG - chr4_1:53959884-53959903 None:intergenic 35.0%
GAAATCACTTGAGCATTTGT+GGG - chr4_1:53959885-53959904 None:intergenic 35.0%
ATGGAGACGAACATTAATGT+GGG - chr4_1:53959932-53959951 None:intergenic 35.0%
AATGGAGACGAACATTAATG+TGG - chr4_1:53959933-53959952 None:intergenic 35.0%
ACATTAATGTTCGTCTCCAT+TGG + chr4_1:53959932-53959951 Msa0555940:intron 35.0%
TGTGTTGCATAAAGTGGAAA+AGG - chr4_1:53960101-53960120 None:intergenic 35.0%
TGCATTTCTTTCCTTTACCA+TGG - chr4_1:53960269-53960288 None:intergenic 35.0%
TAGAAAGCTTTACCAACAAG+CGG + chr4_1:53960392-53960411 Msa0555940:intron 35.0%
GTAATCATTCACCCAAAAGA+AGG - chr4_1:53960421-53960440 None:intergenic 35.0%
TAACCGTAAGAATAGAGACA+TGG + chr4_1:53960803-53960822 Msa0555940:three_prime_UTR 35.0%
CAATTCACTGCCTTCAAATT+AGG + chr4_1:53960838-53960857 Msa0555940:three_prime_UTR 35.0%
AAGTGAAGTAAGATAGGGTG+TGG + chr4_1:53957751-53957770 Msa0555940:five_prime_UTR 40.0%
! GATGATGGCAAAAAGAGAAG+AGG + chr4_1:53957998-53958017 Msa0555940:CDS 40.0%
GAAGAGGTTGTTGACCTTAA+GGG + chr4_1:53958062-53958081 Msa0555940:CDS 40.0%
GGACTTAAACTCATTACGAG+CGG - chr4_1:53958117-53958136 None:intergenic 40.0%
AGTGCAAGAGACTTGTGTTT+AGG + chr4_1:53958486-53958505 Msa0555940:intron 40.0%
GTGCAAGAGACTTGTGTTTA+GGG + chr4_1:53958487-53958506 Msa0555940:intron 40.0%
CACAAAACCAAAGACTCACT+AGG + chr4_1:53958526-53958545 Msa0555940:intron 40.0%
TGGAAATGGAGAGAAAGGAA+AGG + chr4_1:53958643-53958662 Msa0555940:intron 40.0%
!! GGGTAAAATTTGAAGGCATC+AGG + chr4_1:53958726-53958745 Msa0555940:intron 40.0%
ATACCTGAAAAGTGGAGAGT+GGG + chr4_1:53958936-53958955 Msa0555940:intron 40.0%
ATCAGTTGCATGAGTGGAAA+AGG - chr4_1:53959692-53959711 None:intergenic 40.0%
CAGAATATCAGTTGCATGAG+TGG - chr4_1:53959698-53959717 None:intergenic 40.0%
!! TCTGGGCTAGAGTTTTCTTT+TGG - chr4_1:53959782-53959801 None:intergenic 40.0%
GGAAATCACTTGAGCATTTG+TGG - chr4_1:53959886-53959905 None:intergenic 40.0%
AGACGAACATTAATGTGGGA+AGG - chr4_1:53959928-53959947 None:intergenic 40.0%
AAACAGAACACGTGGCAATA+GGG - chr4_1:53959981-53960000 None:intergenic 40.0%
AAAGAAGCAGTGCATTAGCT+AGG + chr4_1:53960225-53960244 Msa0555940:intron 40.0%
GAATCACAATATCACCAAGC+TGG + chr4_1:53960309-53960328 Msa0555940:intron 40.0%
! GCTTGTTGGTAAAGCTTTCT+AGG - chr4_1:53960393-53960412 None:intergenic 40.0%
AAAAGAAGGATACCGCTTGT+TGG - chr4_1:53960407-53960426 None:intergenic 40.0%
! AACAAGCGGTATCCTTCTTT+TGG + chr4_1:53960406-53960425 Msa0555940:intron 40.0%
! ACAAGCGGTATCCTTCTTTT+GGG + chr4_1:53960407-53960426 Msa0555940:intron 40.0%
CCTTATGACAGGAAGAACAT+AGG - chr4_1:53960762-53960781 None:intergenic 40.0%
CCTATGTTCTTCCTGTCATA+AGG + chr4_1:53960759-53960778 Msa0555940:three_prime_UTR 40.0%
AAGAGGAGTTGCGCTCATAA+AGG + chr4_1:53957725-53957744 Msa0555940:five_prime_UTR 45.0%
! AAGAAGGTGAAGTAACGGAG+AGG - chr4_1:53957851-53957870 None:intergenic 45.0%
TAGACGAATGCCATTGAAGG+AGG - chr4_1:53957919-53957938 None:intergenic 45.0%
ACGTAGACGAATGCCATTGA+AGG - chr4_1:53957922-53957941 None:intergenic 45.0%
TTCGGTCTCAGTTGTGATGA+TGG + chr4_1:53957983-53958002 Msa0555940:CDS 45.0%
!! CTCTTCGTTGATTTGTTCGG+TGG - chr4_1:53958048-53958067 None:intergenic 45.0%
CACCGAACAAATCAACGAAG+AGG + chr4_1:53958046-53958065 Msa0555940:CDS 45.0%
CGAAGAGGTTGTTGACCTTA+AGG + chr4_1:53958061-53958080 Msa0555940:CDS 45.0%
! CATTACGAGCGGATTTCTGA+AGG - chr4_1:53958106-53958125 None:intergenic 45.0%
! GGAATGAATAGGGTGCTAGT+AGG + chr4_1:53958348-53958367 Msa0555940:intron 45.0%
! ACAACTGGCTTCTTATTGCC+TGG + chr4_1:53958460-53958479 Msa0555940:intron 45.0%
AAACCAAAGACTCACTAGGG+TGG + chr4_1:53958530-53958549 Msa0555940:intron 45.0%
AACCAAAGACTCACTAGGGT+GGG + chr4_1:53958531-53958550 Msa0555940:intron 45.0%
!!! CACTCTCCACTTTTCAGGTA+TGG - chr4_1:53958937-53958956 None:intergenic 45.0%
CATACCTGAAAAGTGGAGAG+TGG + chr4_1:53958935-53958954 Msa0555940:intron 45.0%
TACCTGAAAAGTGGAGAGTG+GGG + chr4_1:53958937-53958956 Msa0555940:intron 45.0%
TCCTCCAAGCCATCTTACAA+CGG - chr4_1:53958969-53958988 None:intergenic 45.0%
GAGTCTACAAGCCATCGTAT+TGG - chr4_1:53959029-53959048 None:intergenic 45.0%
TCAAACTTAAGACCCGGCAA+TGG - chr4_1:53959080-53959099 None:intergenic 45.0%
!!! TCCTCTGTTTTGGGGTTCTT+CGG - chr4_1:53959273-53959292 None:intergenic 45.0%
AATGTGACCATGCTCACATC+AGG + chr4_1:53959427-53959446 Msa0555940:intron 45.0%
AGACATTCCTGATGTGAGCA+TGG - chr4_1:53959437-53959456 None:intergenic 45.0%
AGTGTAGGGATACACCGAAA+CGG + chr4_1:53959814-53959833 Msa0555940:intron 45.0%
GTGGGGTGACTAATAACACA+GGG - chr4_1:53959867-53959886 None:intergenic 45.0%
TGTGGGGTGACTAATAACAC+AGG - chr4_1:53959868-53959887 None:intergenic 45.0%
! GGATAGATGTGTGGTGGAAT+AGG - chr4_1:53959907-53959926 None:intergenic 45.0%
ATGTGGGAAGGATAGATGTG+TGG - chr4_1:53959916-53959935 None:intergenic 45.0%
AACAGAACACGTGGCAATAG+GGG - chr4_1:53959980-53959999 None:intergenic 45.0%
CAAACAGAACACGTGGCAAT+AGG - chr4_1:53959982-53960001 None:intergenic 45.0%
CTATTGCCACGTGTTCTGTT+TGG + chr4_1:53959980-53959999 Msa0555940:intron 45.0%
ATCCTACCAAACAGAACACG+TGG - chr4_1:53959989-53960008 None:intergenic 45.0%
! TGTCAGTACTGAAGGACTGA+AGG - chr4_1:53960032-53960051 None:intergenic 45.0%
! CAGAAGTCTGTCAGTACTGA+AGG - chr4_1:53960040-53960059 None:intergenic 45.0%
CATAAAGTGGAAAAGGAGCG+CGG - chr4_1:53960094-53960113 None:intergenic 45.0%
TTTATGCAACACACCCGCAT+GGG + chr4_1:53960108-53960127 Msa0555940:intron 45.0%
AATTGAGGAGAATGGGCACT+AGG + chr4_1:53960190-53960209 Msa0555940:intron 45.0%
ATTGAGGAGAATGGGCACTA+GGG + chr4_1:53960191-53960210 Msa0555940:intron 45.0%
CTCGCTTGCTTACTGTAAAG+CGG + chr4_1:53960462-53960481 Msa0555940:CDS 45.0%
TCGCTTGCTTACTGTAAAGC+GGG + chr4_1:53960463-53960482 Msa0555940:CDS 45.0%
CTCCGTCTTTAGTGAAGCTT+CGG + chr4_1:53960570-53960589 Msa0555940:CDS 45.0%
TCCGTCTTTAGTGAAGCTTC+GGG + chr4_1:53960571-53960590 Msa0555940:CDS 45.0%
TCCCGAAGCTTCACTAAAGA+CGG - chr4_1:53960575-53960594 None:intergenic 45.0%
!! TATTAAAACTAAAAATAAAT+GGG - chr4_1:53960341-53960360 None:intergenic 5.0%
!! ATATTAAAACTAAAAATAAA+TGG - chr4_1:53960342-53960361 None:intergenic 5.0%
GCTGGAATTGTGCACGTGTT+TGG - chr4_1:53957948-53957967 None:intergenic 50.0%
AGCGACGAAACACACCTCTT+CGG + chr4_1:53957965-53957984 Msa0555940:CDS 50.0%
CATCACAACTGAGACCGAAG+AGG - chr4_1:53957982-53958001 None:intergenic 50.0%
GCATGAGCAACTCTCCCTTA+AGG - chr4_1:53958079-53958098 None:intergenic 50.0%
TTTCCGTCGCATGCGTAAGA+CGG + chr4_1:53958142-53958161 Msa0555940:CDS 50.0%
ATACCGTCTTACGCATGCGA+CGG - chr4_1:53958148-53958167 None:intergenic 50.0%
! CAAGTCTCTTGCACTGATCC+AGG - chr4_1:53958481-53958500 None:intergenic 50.0%
ACCAAAGACTCACTAGGGTG+GGG + chr4_1:53958532-53958551 Msa0555940:intron 50.0%
GTATTGCGGCGCATAGCAAT+TGG + chr4_1:53958869-53958888 Msa0555940:intron 50.0%
! GACTCTCCCCATTTCAGGTA+TGG - chr4_1:53958906-53958925 None:intergenic 50.0%
TGGAGGAGAAGTCATTCTCC+TGG + chr4_1:53958982-53959001 Msa0555940:intron 50.0%
!!! TTTTGGGGTTCTTCGGTTCC+TGG - chr4_1:53959266-53959285 None:intergenic 50.0%
ACCGAAGAACCCCAAAACAG+AGG + chr4_1:53959269-53959288 Msa0555940:intron 50.0%
TGGGAAGGATAGATGTGTGG+TGG - chr4_1:53959913-53959932 None:intergenic 50.0%
ATGGGAGATGCAGGAACCAA+TGG - chr4_1:53959951-53959970 None:intergenic 50.0%
TGCCACGTGTTCTGTTTGGT+AGG + chr4_1:53959984-53960003 Msa0555940:intron 50.0%
TGCGGGTGTGTTGCATAAAG+TGG - chr4_1:53960107-53960126 None:intergenic 50.0%
CTTTATGCAACACACCCGCA+TGG + chr4_1:53960107-53960126 Msa0555940:intron 50.0%
ATGGGCACTAGGGATTCAGT+AGG + chr4_1:53960201-53960220 Msa0555940:intron 50.0%
AAAGCGGGAAAGAGAGATCG+AGG + chr4_1:53960478-53960497 Msa0555940:CDS 50.0%
! AGAGAGATCGAGGAGGGTAT+TGG + chr4_1:53960488-53960507 Msa0555940:CDS 50.0%
!! TCGAGGAGGGTATTGGTAAG+AGG + chr4_1:53960495-53960514 Msa0555940:CDS 50.0%
AGCTTCACTAAAGACGGAGG+TGG - chr4_1:53960569-53960588 None:intergenic 50.0%
CGAAGCTTCACTAAAGACGG+AGG - chr4_1:53960572-53960591 None:intergenic 50.0%
GTCTTTAGTGAAGCTTCGGG+AGG + chr4_1:53960574-53960593 Msa0555940:CDS 50.0%
TTTAGTGAAGCTTCGGGAGG+AGG + chr4_1:53960577-53960596 Msa0555940:CDS 50.0%
AGAAGCCGCTGAAGCTGAAA+AGG + chr4_1:53960610-53960629 Msa0555940:CDS 50.0%
! TGCAGCCTTTTCAGCTTCAG+CGG - chr4_1:53960618-53960637 None:intergenic 50.0%
! GAAGAGGTGTGTTTCGTCGC+TGG - chr4_1:53957966-53957985 None:intergenic 55.0%
ACGCATGCGACGGAAATCAC+TGG - chr4_1:53958138-53958157 None:intergenic 55.0%
TCCCCACCCTAGTGAGTCTT+TGG - chr4_1:53958536-53958555 None:intergenic 55.0%
TTCGGGACTCTCCCCATTTC+AGG - chr4_1:53958911-53958930 None:intergenic 55.0%
!! CACCCCACTCTCCACTTTTC+AGG - chr4_1:53958942-53958961 None:intergenic 55.0%
CTGAAAAGTGGAGAGTGGGG+TGG + chr4_1:53958940-53958959 Msa0555940:intron 55.0%
AAAAGTGGAGAGTGGGGTGG+TGG + chr4_1:53958943-53958962 Msa0555940:intron 55.0%
GTGGCCGTTGTAAGATGGCT+TGG + chr4_1:53958962-53958981 Msa0555940:intron 55.0%
! GCCGTTGTAAGATGGCTTGG+AGG + chr4_1:53958965-53958984 Msa0555940:intron 55.0%
TGGCAATAGGGGAGGGCAAT+GGG - chr4_1:53959969-53959988 None:intergenic 55.0%
GAACACGTGGCAATAGGGGA+GGG - chr4_1:53959976-53959995 None:intergenic 55.0%
AGAACACGTGGCAATAGGGG+AGG - chr4_1:53959977-53959996 None:intergenic 55.0%
TAAATGGGGGTGGACCAGCT+TGG - chr4_1:53960326-53960345 None:intergenic 55.0%
CGGGAAAGAGAGATCGAGGA+GGG + chr4_1:53960482-53960501 Msa0555940:CDS 55.0%
GCTGAAAAGGCTGCATGAGC+TGG + chr4_1:53960623-53960642 Msa0555940:exon 55.0%
! GGGTGGTGGCCGTTGTAAGA+TGG + chr4_1:53958957-53958976 Msa0555940:intron 60.0%
GTGGCAATAGGGGAGGGCAA+TGG - chr4_1:53959970-53959989 None:intergenic 60.0%
ATGCAACACACCCGCATGGG+AGG + chr4_1:53960111-53960130 Msa0555940:intron 60.0%
GCGGGAAAGAGAGATCGAGG+AGG + chr4_1:53960481-53960500 Msa0555940:CDS 60.0%
GGGAGGGCAATGGGAGATGC+AGG - chr4_1:53959960-53959979 None:intergenic 65.0%
CCGTCATGAGCCTCCCATGC+GGG - chr4_1:53960124-53960143 None:intergenic 65.0%
CCCGCATGGGAGGCTCATGA+CGG + chr4_1:53960121-53960140 Msa0555940:intron 65.0%
CCCGTCATGAGCCTCCCATG+CGG - chr4_1:53960125-53960144 None:intergenic 65.0%
CCGCATGGGAGGCTCATGAC+GGG + chr4_1:53960122-53960141 Msa0555940:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 53957720 53960902 53957720 ID=Msa0555940;Name=Msa0555940
chr4_1 mRNA 53957720 53960902 53957720 ID=Msa0555940-mRNA-1;Parent=Msa0555940;Name=Msa0555940-mRNA-1;_AED=0.01;_eAED=0.01;_QI=120|1|1|1|1|1|2|262|168
chr4_1 exon 53957720 53958163 53957720 ID=Msa0555940-mRNA-1:exon:15766;Parent=Msa0555940-mRNA-1
chr4_1 exon 53960458 53960902 53960458 ID=Msa0555940-mRNA-1:exon:15767;Parent=Msa0555940-mRNA-1
chr4_1 five_prime_UTR 53957720 53957839 53957720 ID=Msa0555940-mRNA-1:five_prime_utr;Parent=Msa0555940-mRNA-1
chr4_1 CDS 53957840 53958163 53957840 ID=Msa0555940-mRNA-1:cds;Parent=Msa0555940-mRNA-1
chr4_1 CDS 53960458 53960640 53960458 ID=Msa0555940-mRNA-1:cds;Parent=Msa0555940-mRNA-1
chr4_1 three_prime_UTR 53960641 53960902 53960641 ID=Msa0555940-mRNA-1:three_prime_utr;Parent=Msa0555940-mRNA-1
Gene Sequence

>Msa0555940

ATGTTGAACCTCTCCGTTACTTCACCTTCTTCTTCTTCAACACTTTCCTTTCTTCCAAAACCATTACAATTCAAAACCTCCTTCAATGGCATTCGTCTACGTCAACCAAACACGTGCACAATTCCAGCGACGAAACACACCTCTTCGGTCTCAGTTGTGATGATGGCAAAAAGAGAAGAGGAATTGAAGCAAATTAGAACTAAAACCACCGAACAAATCAACGAAGAGGTTGTTGACCTTAAGGGAGAGTTGCTCATGCTTCGCCTTCAGAAATCCGCTCGTAATGAGTTTAAGTCCAGTGATTTCCGTCGCATGCGTAAGACGATTGCTCGCTTGCTTACTGTAAAGCGGGAAAGAGAGATCGAGGAGGGTATTGGTAAGAGGTTGTCCAGAAAGCTTGATAAAAAATGGAAGAAAAGCATTGTTGTAAAACCACCTCCGTCTTTAGTGAAGCTTCGGGAGGAGGAAGCAGCTGCAGAAGCCGCTGAAGCTGAAAAGGCTGCATGA

Protein sequence

>Msa0555940

MLNLSVTSPSSSSTLSFLPKPLQFKTSFNGIRLRQPNTCTIPATKHTSSVSVVMMAKREEELKQIRTKTTEQINEEVVDLKGELLMLRLQKSARNEFKSSDFRRMRKTIARLLTVKREREIEEGIGKRLSRKLDKKWKKSIVVKPPPSLVKLREEEAAAEAAEAEKAA*