Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706420 | XP_024627450.2 | 78.676 | 272 | 4 | 2 | 1 | 235 | 1 | 255 | 1.71e-142 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706420 | A0A072TU68 | 78.676 | 272 | 4 | 2 | 1 | 235 | 1 | 255 | 8.15e-143 | 409 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0706420 | 0.816451 | 5.492716e-52 | -8.615850e-47 |
| Msa0611380 | Msa0706420 | 0.825278 | 5.113986e-54 | -8.615850e-47 |
| Msa0619990 | Msa0706420 | 0.908683 | 1.306936e-81 | -8.615850e-47 |
| Msa0628640 | Msa0706420 | 0.810545 | 1.093126e-50 | -8.615850e-47 |
| Msa0631120 | Msa0706420 | 0.857751 | 1.318163e-62 | -8.615850e-47 |
| Msa0650070 | Msa0706420 | 0.811197 | 7.897881e-51 | -8.615850e-47 |
| Msa0666030 | Msa0706420 | 0.810657 | 1.033882e-50 | -8.615850e-47 |
| Msa0669340 | Msa0706420 | 0.843967 | 1.011323e-58 | -8.615850e-47 |
| Msa0684500 | Msa0706420 | 0.801206 | 1.004595e-48 | -8.615850e-47 |
| Msa0706360 | Msa0706420 | 0.831088 | 2.035028e-55 | -8.615850e-47 |
| Msa0706420 | Msa0716450 | 0.830391 | 3.015908e-55 | -8.615850e-47 |
| Msa0706420 | Msa0717260 | 0.842910 | 1.937933e-58 | -8.615850e-47 |
| Msa0706420 | Msa0758320 | 0.846359 | 2.281960e-59 | -8.615850e-47 |
| Msa0706420 | Msa0812820 | 0.805215 | 1.486746e-49 | -8.615850e-47 |
| Msa0706420 | Msa0837440 | 0.817470 | 3.243122e-52 | -8.615850e-47 |
| Msa0706420 | Msa0837980 | 0.838480 | 2.804293e-57 | -8.615850e-47 |
| Msa0706420 | Msa0853320 | 0.831137 | 1.979812e-55 | -8.615850e-47 |
| Msa0706420 | Msa0869100 | 0.805202 | 1.495700e-49 | -8.615850e-47 |
| Msa0706420 | Msa0880140 | 0.821233 | 4.501556e-53 | -8.615850e-47 |
| Msa0706420 | Msa0933310 | 0.806314 | 8.734998e-50 | -8.615850e-47 |
| Msa0706420 | Msa1002620 | 0.805666 | 1.195641e-49 | -8.615850e-47 |
| Msa0706420 | Msa1085300 | 0.800136 | 1.660267e-48 | -8.615850e-47 |
| Msa0706420 | Msa1113850 | 0.809085 | 2.252315e-50 | -8.615850e-47 |
| Msa0706420 | Msa1172670 | 0.810977 | 8.814421e-51 | -8.615850e-47 |
| Msa0706420 | Msa1179460 | 0.818886 | 1.550659e-52 | -8.615850e-47 |
| Msa0706420 | Msa1190120 | 0.805221 | 1.482025e-49 | -8.615850e-47 |
| Msa0706420 | Msa1197590 | 0.827763 | 1.307024e-54 | -8.615850e-47 |
| Msa0706420 | Msa1203000 | 0.807881 | 4.070198e-50 | -8.615850e-47 |
| Msa0706420 | Msa1211550 | 0.805191 | 1.504060e-49 | -8.615850e-47 |
| Msa0706420 | Msa1214880 | 0.806277 | 8.895748e-50 | -8.615850e-47 |
| Msa0706420 | Msa1214890 | 0.832859 | 7.433141e-56 | -8.615850e-47 |
| Msa0706420 | Msa1217940 | 0.826229 | 3.042196e-54 | -8.615850e-47 |
| Msa0706420 | Msa1219260 | 0.814089 | 1.839637e-51 | -8.615850e-47 |
| Msa0706420 | Msa1255280 | 0.810216 | 1.286911e-50 | -8.615850e-47 |
| Msa0706420 | Msa1266960 | 0.810044 | 1.402052e-50 | -8.615850e-47 |
| Msa0706420 | Msa1291870 | 0.810898 | 9.168661e-51 | -8.615850e-47 |
| Msa0706420 | Msa1303250 | 0.802411 | 5.682997e-49 | -8.615850e-47 |
| Msa0706420 | Msa1331910 | 0.827734 | 1.328406e-54 | -8.615850e-47 |
| Msa0706420 | Msa1346370 | 0.806427 | 8.270549e-50 | -8.615850e-47 |
| Msa0706420 | Msa1397250 | 0.828854 | 7.130729e-55 | -8.615850e-47 |
| Msa0706420 | Msa1399560 | 0.809659 | 1.696153e-50 | -8.615850e-47 |
| Msa0706420 | Msa1401150 | 0.815741 | 7.915467e-52 | -8.615850e-47 |
| Msa0706420 | Msa1443840 | 0.808666 | 2.768495e-50 | -8.615850e-47 |
| Msa0140780 | Msa0706420 | 0.800857 | 1.183969e-48 | -8.615850e-47 |
| Msa0141100 | Msa0706420 | 0.829893 | 3.989937e-55 | -8.615850e-47 |
| Msa0157290 | Msa0706420 | 0.816084 | 6.636616e-52 | -8.615850e-47 |
| Msa0191040 | Msa0706420 | 0.816124 | 6.500061e-52 | -8.615850e-47 |
| Msa0220300 | Msa0706420 | 0.801362 | 9.333824e-49 | -8.615850e-47 |
| Msa0225600 | Msa0706420 | 0.811317 | 7.436669e-51 | -8.615850e-47 |
| Msa0233340 | Msa0706420 | 0.815716 | 8.017192e-52 | -8.615850e-47 |
| Msa0374850 | Msa0706420 | 0.830589 | 2.697451e-55 | -8.615850e-47 |
| Msa0375090 | Msa0706420 | 0.828294 | 9.737749e-55 | -8.615850e-47 |
| Msa0470340 | Msa0706420 | 0.817319 | 3.506738e-52 | -8.615850e-47 |
| Msa0480950 | Msa0706420 | 0.809452 | 1.879438e-50 | -8.615850e-47 |
| Msa0243100 | Msa0706420 | 0.806054 | 9.911163e-50 | -8.615850e-47 |
| Msa0251240 | Msa0706420 | 0.803600 | 3.225983e-49 | -8.615850e-47 |
| Msa0266450 | Msa0706420 | 0.820771 | 5.751553e-53 | -8.615850e-47 |
| Msa0287650 | Msa0706420 | 0.804958 | 1.682215e-49 | -8.615850e-47 |
| Msa0311690 | Msa0706420 | 0.808647 | 2.794886e-50 | -8.615850e-47 |
| Msa0332810 | Msa0706420 | 0.802602 | 5.189367e-49 | -8.615850e-47 |
| Msa0484780 | Msa0706420 | 0.807674 | 4.504871e-50 | -8.615850e-47 |
| Msa0531430 | Msa0706420 | 0.847130 | 1.404440e-59 | -8.615850e-47 |
| Msa0534590 | Msa0706420 | 0.846018 | 2.825827e-59 | -8.615850e-47 |
| Msa0590800 | Msa0706420 | 0.855747 | 5.126641e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706420 | MtrunA17_Chr8g0385681 | 78.676 | 272 | 4 | 2 | 1 | 235 | 1 | 255 | 1.57e-146 | 409 |
| Msa0706420 | MtrunA17_Chr8g0385691 | 73.359 | 259 | 21 | 2 | 13 | 234 | 4 | 251 | 2.30e-130 | 368 |
| Msa0706420 | MtrunA17_Chr3g0131581 | 59.740 | 231 | 56 | 1 | 41 | 234 | 41 | 271 | 4.07e-96 | 282 |
| Msa0706420 | MtrunA17_Chr1g0161441 | 33.333 | 240 | 114 | 5 | 38 | 235 | 3 | 238 | 9.92e-34 | 121 |
| Msa0706420 | MtrunA17_Chr4g0058811 | 29.032 | 124 | 86 | 2 | 65 | 187 | 69 | 191 | 6.17e-12 | 63.5 |
| Msa0706420 | MtrunA17_Chr4g0058791 | 27.419 | 124 | 88 | 2 | 65 | 187 | 67 | 189 | 1.01e-11 | 62.8 |
| Msa0706420 | MtrunA17_Chr3g0115591 | 28.125 | 160 | 110 | 5 | 40 | 197 | 21 | 177 | 5.13e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0706420 | AT1G01630.1 | 51.739 | 230 | 74 | 1 | 42 | 234 | 25 | 254 | 1.10e-79 | 240 |
| Msa0706420 | AT1G14820.3 | 32.203 | 236 | 117 | 4 | 42 | 235 | 3 | 237 | 7.46e-27 | 104 |
| Msa0706420 | AT1G14820.2 | 33.641 | 217 | 101 | 4 | 61 | 235 | 9 | 224 | 5.90e-26 | 101 |
| Msa0706420 | AT1G14820.1 | 33.641 | 217 | 101 | 4 | 61 | 235 | 9 | 224 | 5.90e-26 | 101 |
| Msa0706420 | AT5G63060.2 | 31.452 | 124 | 83 | 2 | 65 | 187 | 35 | 157 | 4.61e-12 | 63.9 |
| Msa0706420 | AT5G63060.1 | 31.452 | 124 | 83 | 2 | 65 | 187 | 70 | 192 | 7.21e-12 | 63.9 |
| Msa0706420 | AT1G75170.2 | 29.496 | 139 | 93 | 4 | 66 | 202 | 43 | 178 | 2.49e-11 | 62.8 |
| Msa0706420 | AT1G75170.1 | 29.496 | 139 | 93 | 4 | 66 | 202 | 43 | 178 | 2.49e-11 | 62.8 |
Find 59 sgRNAs with CRISPR-Local
Find 317 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTCTCACAAGACGGATTT+TGG | 0.165763 | 4_4:+79384897 | None:intergenic |
| AGTGAAGGGTTGTCATAATA+AGG | 0.249832 | 4_4:-79385025 | Msa0706420:CDS |
| AACTATATATACCTGCAAAA+TGG | 0.312721 | 4_4:+79380798 | None:intergenic |
| GACCAATCTTGTCGCGTCCT+TGG | 0.313425 | 4_4:+79381190 | None:intergenic |
| AGGCCTTGTCGTCTGCAATT+TGG | 0.345554 | 4_4:+79381217 | None:intergenic |
| ACCAATCTTGTCGCGTCCTT+GGG | 0.377029 | 4_4:+79381191 | None:intergenic |
| AGTCAACTCCCTGAGATATA+TGG | 0.398239 | 4_4:-79380197 | Msa0706420:CDS |
| ATTAGTTTAATTAGATATCC+TGG | 0.398913 | 4_4:+79380150 | None:intergenic |
| AGTATTTGTGGAGAACAATA+AGG | 0.402414 | 4_4:-79380252 | Msa0706420:CDS |
| TGTTCCTCAAGTACTTGAAA+TGG | 0.405903 | 4_4:-79381290 | Msa0706420:CDS |
| AGACATTCATTTGTTCCAAA+TGG | 0.425215 | 4_4:-79381267 | Msa0706420:CDS |
| GATAGAGATATGGAACCATT+TGG | 0.426836 | 4_4:+79381252 | None:intergenic |
| ATCCTTGCAGATAGTATTTG+TGG | 0.435946 | 4_4:-79380264 | Msa0706420:intron |
| GGTTGTCATAATAAGGGAAC+AGG | 0.456087 | 4_4:-79385018 | Msa0706420:CDS |
| CCAGGACAAGAGAAATTTGT+TGG | 0.459213 | 4_4:-79380886 | Msa0706420:CDS |
| CCACCGAAGGCAATGAGTAT+AGG | 0.460670 | 4_4:+79381165 | None:intergenic |
| AGTTTGCCACCATATATCTC+AGG | 0.466880 | 4_4:+79380188 | None:intergenic |
| ATGAACCTGTGATAGAGATA+TGG | 0.468267 | 4_4:+79381242 | None:intergenic |
| GCCCAAGGACGCGACAAGAT+TGG | 0.471686 | 4_4:-79381192 | Msa0706420:CDS |
| CCAACAAATTTCTCTTGTCC+TGG | 0.481649 | 4_4:+79380886 | None:intergenic |
| GTGAAGGGTTGTCATAATAA+GGG | 0.498355 | 4_4:-79385024 | Msa0706420:CDS |
| ATTGAAAATGGAAGCAGTGA+AGG | 0.507099 | 4_4:-79385040 | None:intergenic |
| TTTAATTAGATATCCTGGAT+GGG | 0.507649 | 4_4:+79380155 | None:intergenic |
| CGACCTATACTCATTGCCTT+CGG | 0.509268 | 4_4:-79381168 | Msa0706420:CDS |
| AGATTTAGCGTATGTAACTA+AGG | 0.511949 | 4_4:-79384977 | Msa0706420:CDS |
| GACGACAAGGCCTTCGCCCA+AGG | 0.521166 | 4_4:-79381207 | Msa0706420:CDS |
| GTTTAATTAGATATCCTGGA+TGG | 0.523947 | 4_4:+79380154 | None:intergenic |
| AAACATTATCAAAAGAAAGA+TGG | 0.532424 | 4_4:-79381141 | Msa0706420:CDS |
| ATAGGTAGTACCTTGGAAGA+TGG | 0.533530 | 4_4:+79384856 | None:intergenic |
| CTTGTCGCGTCCTTGGGCGA+AGG | 0.534331 | 4_4:+79381197 | None:intergenic |
| TGTTGGTATAGCAGAACTCA+AGG | 0.548158 | 4_4:-79380869 | Msa0706420:CDS |
| GTCTCCATTTCAAGTACTTG+AGG | 0.552376 | 4_4:+79381286 | None:intergenic |
| TATAGCAGAACTCAAGGGAT+GGG | 0.554676 | 4_4:-79380863 | Msa0706420:CDS |
| AGTGATGTTCGTGGATACAT+TGG | 0.558957 | 4_4:-79380829 | Msa0706420:CDS |
| ACTGCAATTAGTCCCCATCC+AGG | 0.559870 | 4_4:-79380168 | Msa0706420:CDS |
| TTAATTAGATATCCTGGATG+GGG | 0.560226 | 4_4:+79380156 | None:intergenic |
| TGGTTCCATATCTCTATCAC+AGG | 0.560409 | 4_4:-79381247 | Msa0706420:CDS |
| CCTATACTCATTGCCTTCGG+TGG | 0.567691 | 4_4:-79381165 | Msa0706420:CDS |
| TACTCAAATAGTGATGTTCG+TGG | 0.571932 | 4_4:-79380838 | Msa0706420:CDS |
| CTAATTAAACTAATCAACAC+CGG | 0.572195 | 4_4:-79380141 | Msa0706420:exon |
| TGGATCTTGTGTTTCAACAA+AGG | 0.574409 | 4_4:+79384876 | None:intergenic |
| TCGTGATTTAGATGTGGAGA+AGG | 0.580581 | 4_4:-79381322 | Msa0706420:CDS |
| TTGAAAATGGAAGCAGTGAA+GGG | 0.584047 | 4_4:-79385039 | None:intergenic |
| ACAAATTTCTCTTGTCCTGG+TGG | 0.587062 | 4_4:+79380889 | None:intergenic |
| TGATGTATCAGCATGCCACC+AGG | 0.599653 | 4_4:-79380904 | Msa0706420:intron |
| CAACAAAGGCTCTCACAAGA+CGG | 0.602126 | 4_4:+79384890 | None:intergenic |
| AACACAAGATCCATCTTCCA+AGG | 0.605847 | 4_4:-79384866 | Msa0706420:intron |
| TAGCCAAATTGCAGACGACA+AGG | 0.617317 | 4_4:-79381220 | Msa0706420:CDS |
| GTATAGCAGAACTCAAGGGA+TGG | 0.617434 | 4_4:-79380864 | Msa0706420:CDS |
| ATTAGAAGCAAAAGCACAAG+TGG | 0.621641 | 4_4:-79384953 | Msa0706420:CDS |
| ATATACCTGCAAAATGGAGA+GGG | 0.622606 | 4_4:+79380804 | None:intergenic |
| TTCTTGATAAACTATGTGCA+AGG | 0.626670 | 4_4:-79381012 | Msa0706420:intron |
| GTTTGCCACCATATATCTCA+GGG | 0.627343 | 4_4:+79380189 | None:intergenic |
| ATAGCAGAACTCAAGGGATG+GGG | 0.630684 | 4_4:-79380862 | Msa0706420:CDS |
| ACGAGCTCGTGATTTAGATG+TGG | 0.640280 | 4_4:-79381328 | Msa0706420:CDS |
| TATATACCTGCAAAATGGAG+AGG | 0.641453 | 4_4:+79380803 | None:intergenic |
| GTTGGTATAGCAGAACTCAA+GGG | 0.644604 | 4_4:-79380868 | Msa0706420:CDS |
| TAATTAAACTAATCAACACC+GGG | 0.646365 | 4_4:-79380140 | Msa0706420:three_prime_UTR |
| CAACTCCCTGAGATATATGG+TGG | 0.663200 | 4_4:-79380194 | Msa0706420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGAAAAACATATAAAT+CGG | + | chr4_4:79380929-79380948 | None:intergenic | 10.0% |
| !!! | TTAAAATTTTACTATATCAA+TGG | + | chr4_4:79381713-79381732 | None:intergenic | 10.0% |
| !!! | TTGATATAGTAAAATTTTAA+AGG | - | chr4_4:79381713-79381732 | Msa0706420:intron | 10.0% |
| !!! | TGATATAGTAAAATTTTAAA+GGG | - | chr4_4:79381714-79381733 | Msa0706420:intron | 10.0% |
| !!! | AATGTAGTATTAATTTATTT+TGG | - | chr4_4:79382128-79382147 | Msa0706420:intron | 10.0% |
| !!! | CATTTTTATTAATTTTTTGA+GGG | + | chr4_4:79382583-79382602 | None:intergenic | 10.0% |
| !!! | TCATTTTTATTAATTTTTTG+AGG | + | chr4_4:79382584-79382603 | None:intergenic | 10.0% |
| !!! | ATCTTTTTTCATTTATTTTT+TGG | + | chr4_4:79382929-79382948 | None:intergenic | 10.0% |
| !!! | TGAACTTTTTTTAAATAAAA+AGG | + | chr4_4:79383366-79383385 | None:intergenic | 10.0% |
| !! | AATTATTCTCAATAAATAAT+TGG | + | chr4_4:79384678-79384697 | None:intergenic | 10.0% |
| !!! | GTCTGATTATTTTTTTTTAA+AGG | - | chr4_4:79380671-79380690 | Msa0706420:intron | 15.0% |
| !!! | GATTATTTTTTTTTAAAGGA+AGG | - | chr4_4:79380675-79380694 | Msa0706420:intron | 15.0% |
| !! | TCAAATTATATAAATACCAA+GGG | - | chr4_4:79381018-79381037 | Msa0706420:CDS | 15.0% |
| !! | TGAATAAATAACAAAGTTTA+TGG | - | chr4_4:79381095-79381114 | Msa0706420:intron | 15.0% |
| !! | AATATTAATTGACTAAGATA+AGG | + | chr4_4:79381152-79381171 | None:intergenic | 15.0% |
| !! | ATAATAATTTGATATAAGGA+AGG | - | chr4_4:79382326-79382345 | Msa0706420:intron | 15.0% |
| !! | TCATAAAAATTCATATTGAA+TGG | - | chr4_4:79382770-79382789 | Msa0706420:intron | 15.0% |
| !! | GTTATGTTAAACATATTTAT+TGG | + | chr4_4:79383503-79383522 | None:intergenic | 15.0% |
| !! | ATGTTTAACATAACATTTAA+TGG | - | chr4_4:79383509-79383528 | Msa0706420:intron | 15.0% |
| !! | AGTGCTATATTAATATATAA+AGG | + | chr4_4:79384442-79384461 | None:intergenic | 15.0% |
| !! | ATGAGATGTTATATATAATT+TGG | + | chr4_4:79384817-79384836 | None:intergenic | 15.0% |
| !!! | TTTTGTAATATTATAGACGT+TGG | + | chr4_4:79380376-79380395 | None:intergenic | 20.0% |
| !! | TTACAAAAAATTGCTTCATA+TGG | - | chr4_4:79380388-79380407 | Msa0706420:intron | 20.0% |
| !!! | TTTTAATTAGGAGTCATATA+CGG | - | chr4_4:79380883-79380902 | Msa0706420:CDS | 20.0% |
| !!! | TATACGGTTTTGTATTTTTT+TGG | - | chr4_4:79380899-79380918 | Msa0706420:intron | 20.0% |
| !!! | ATACGGTTTTGTATTTTTTT+GGG | - | chr4_4:79380900-79380919 | Msa0706420:intron | 20.0% |
| !! | GTTAGAGCAAATATTTAAAT+CGG | + | chr4_4:79380958-79380977 | None:intergenic | 20.0% |
| !! | GTCAAATTATATAAATACCA+AGG | - | chr4_4:79381017-79381036 | Msa0706420:CDS | 20.0% |
| !!! | CTTAATATTCAACTTCTTTT+AGG | + | chr4_4:79381213-79381232 | None:intergenic | 20.0% |
| !! | AAAAGAAGTTGAATATTAAG+TGG | - | chr4_4:79381213-79381232 | Msa0706420:CDS | 20.0% |
| !! | TACAAACAAATTATACTATC+AGG | + | chr4_4:79381462-79381481 | None:intergenic | 20.0% |
| !!! | ATAGTAAAATTTTAAAGGGA+TGG | - | chr4_4:79381718-79381737 | Msa0706420:intron | 20.0% |
| !! | TTGTTTAAATTGATATGAAC+CGG | + | chr4_4:79382256-79382275 | None:intergenic | 20.0% |
| !! | GGTGAAAAAGTAAATTATTA+TGG | - | chr4_4:79382347-79382366 | Msa0706420:intron | 20.0% |
| !! | AAATTATTATGGTAAGATGT+AGG | - | chr4_4:79382358-79382377 | Msa0706420:intron | 20.0% |
| !! | AGATTACAAGGATAATTTAT+AGG | - | chr4_4:79382398-79382417 | Msa0706420:intron | 20.0% |
| !!! | ATTTTATGATTCTCAACAAT+GGG | + | chr4_4:79382685-79382704 | None:intergenic | 20.0% |
| !! | TTGAGAATCATAAAATCATA+GGG | - | chr4_4:79382689-79382708 | Msa0706420:intron | 20.0% |
| !! | ATTATAAATGCCATCAATAT+GGG | + | chr4_4:79383093-79383112 | None:intergenic | 20.0% |
| !! | AATTATAAATGCCATCAATA+TGG | + | chr4_4:79383094-79383113 | None:intergenic | 20.0% |
| !!! | TTTTCATACCTCTAAAAAAA+AGG | - | chr4_4:79383415-79383434 | Msa0706420:intron | 20.0% |
| !!! | GAAAAATACCTTTTTTTTAG+AGG | + | chr4_4:79383426-79383445 | None:intergenic | 20.0% |
| !! | AAACATTATCAAAAGAAAGA+TGG | - | chr4_4:79384031-79384050 | Msa0706420:intron | 20.0% |
| !!! | TAATTCCTTATTTCAATCTA+TGG | - | chr4_4:79384187-79384206 | Msa0706420:intron | 20.0% |
| !! | TATATATTAATATAGCACTC+AGG | - | chr4_4:79384443-79384462 | Msa0706420:intron | 20.0% |
| !! | AAGGTGATGTTTAAATTATA+TGG | - | chr4_4:79384603-79384622 | Msa0706420:intron | 20.0% |
| !! | AGGTGATGTTTAAATTATAT+GGG | - | chr4_4:79384604-79384623 | Msa0706420:intron | 20.0% |
| !! | GAGAATAATTAATTCATATG+AGG | - | chr4_4:79384688-79384707 | Msa0706420:intron | 20.0% |
| !! | TACATTAACATGTACTTTAA+GGG | - | chr4_4:79384775-79384794 | Msa0706420:intron | 20.0% |
| !! | ATATATAACATCTCATTGTA+TGG | - | chr4_4:79384821-79384840 | Msa0706420:intron | 20.0% |
| !!! | TGTTTAAGTTTGAAATATTG+AGG | - | chr4_4:79384858-79384877 | Msa0706420:intron | 20.0% |
| !!! | GTTTAAGTTTGAAATATTGA+GGG | - | chr4_4:79384859-79384878 | Msa0706420:intron | 20.0% |
| !!! | ATTAGTTTAATTAGATATCC+TGG | + | chr4_4:79385025-79385044 | None:intergenic | 20.0% |
| ! | TAAGAAATGAGGAAGATAAT+AGG | + | chr4_4:79380337-79380356 | None:intergenic | 25.0% |
| ! | TATGAGTATGATAAGAAATG+AGG | + | chr4_4:79380348-79380367 | None:intergenic | 25.0% |
| ! | AAAAATTGCTTCATATGGTT+TGG | - | chr4_4:79380393-79380412 | Msa0706420:intron | 25.0% |
| ! | AGTATGAAACATGTGAATAT+AGG | + | chr4_4:79380427-79380446 | None:intergenic | 25.0% |
| ! | ACTAACATTTGATATCCTTA+AGG | + | chr4_4:79380653-79380672 | None:intergenic | 25.0% |
| !!! | TTTGTCATTTTATCTACTAC+CGG | - | chr4_4:79380792-79380811 | Msa0706420:intron | 25.0% |
| !!! | GAACGTAAAATATCACTTTT+CGG | + | chr4_4:79380832-79380851 | None:intergenic | 25.0% |
| ! | CCTAATTAAAAATGTTCTGT+CGG | + | chr4_4:79380874-79380893 | None:intergenic | 25.0% |
| ! | GGTAAATGAATGAAAAAGTA+CGG | - | chr4_4:79380993-79381012 | Msa0706420:intron | 25.0% |
| !!! | TGTCTTTTTTCTTATTCGTT+TGG | - | chr4_4:79381597-79381616 | Msa0706420:intron | 25.0% |
| !!! | TAAAATTTTAAAGGGATGGT+TGG | - | chr4_4:79381722-79381741 | Msa0706420:intron | 25.0% |
| !!! | AAAATTTTAAAGGGATGGTT+GGG | - | chr4_4:79381723-79381742 | Msa0706420:intron | 25.0% |
| !!! | CATGGATATATTTTTAGAGA+GGG | + | chr4_4:79381937-79381956 | None:intergenic | 25.0% |
| !!! | TCATGGATATATTTTTAGAG+AGG | + | chr4_4:79381938-79381957 | None:intergenic | 25.0% |
| ! | TTTATTCATCAGATGAATCA+TGG | + | chr4_4:79381955-79381974 | None:intergenic | 25.0% |
| ! | TTCCATCTTTCATATATCTA+TGG | - | chr4_4:79382004-79382023 | Msa0706420:intron | 25.0% |
| ! | TCCATCTTTCATATATCTAT+GGG | - | chr4_4:79382005-79382024 | Msa0706420:intron | 25.0% |
| ! | TCTGAAAAATATTGTAAGAG+AGG | + | chr4_4:79382065-79382084 | None:intergenic | 25.0% |
| !!! | GTGTATCACTTTTTTTAACA+AGG | + | chr4_4:79382196-79382215 | None:intergenic | 25.0% |
| ! | TTACAAGGATAATTTATAGG+AGG | - | chr4_4:79382401-79382420 | Msa0706420:intron | 25.0% |
| ! | TACAAGGATAATTTATAGGA+GGG | - | chr4_4:79382402-79382421 | Msa0706420:intron | 25.0% |
| ! | TAATGTAAAAGAAAGGAAGA+TGG | - | chr4_4:79382456-79382475 | Msa0706420:intron | 25.0% |
| !! | GATTTTATGATTCTCAACAA+TGG | + | chr4_4:79382686-79382705 | None:intergenic | 25.0% |
| ! | GTTGAGAATCATAAAATCAT+AGG | - | chr4_4:79382688-79382707 | Msa0706420:intron | 25.0% |
| !! | ATAACATATGTGTATTGATG+AGG | - | chr4_4:79382740-79382759 | Msa0706420:intron | 25.0% |
| ! | ATATTGCATATTATATGCAG+AGG | - | chr4_4:79382852-79382871 | Msa0706420:intron | 25.0% |
| ! | TTACTAGTTAAAGTCATAGA+GGG | + | chr4_4:79382985-79383004 | None:intergenic | 25.0% |
| ! | AACTAGTAACCATCTAATTA+TGG | - | chr4_4:79382996-79383015 | Msa0706420:intron | 25.0% |
| ! | AAGTTATCTCAAGTTAATCA+AGG | + | chr4_4:79383057-79383076 | None:intergenic | 25.0% |
| !! | TCAATATGGGTTAAAATAGT+TGG | + | chr4_4:79383080-79383099 | None:intergenic | 25.0% |
| !!! | ACTATTTTAACCCATATTGA+TGG | - | chr4_4:79383080-79383099 | Msa0706420:intron | 25.0% |
| !!! | GAGACTTATTTTTGAATTCA+TGG | - | chr4_4:79383129-79383148 | Msa0706420:intron | 25.0% |
| !! | CTTTTGACATATCAGATTAT+CGG | + | chr4_4:79383155-79383174 | None:intergenic | 25.0% |
| ! | ATAATCTGATATGTCAAAAG+TGG | - | chr4_4:79383155-79383174 | Msa0706420:intron | 25.0% |
| !!! | AAAAGGTATTTTTCAGTGAT+TGG | - | chr4_4:79383432-79383451 | Msa0706420:intron | 25.0% |
| ! | CTCACAAATTAAATTTCACA+TGG | + | chr4_4:79383691-79383710 | None:intergenic | 25.0% |
| ! | ATTTAAGCATAACTTCTACT+TGG | + | chr4_4:79383742-79383761 | None:intergenic | 25.0% |
| ! | GAAGTTATGCTTAAATTTGT+TGG | - | chr4_4:79383746-79383765 | Msa0706420:intron | 25.0% |
| !! | AAGAGGATATATTTTACTCT+TGG | - | chr4_4:79383783-79383802 | Msa0706420:intron | 25.0% |
| !! | TTAACAATTTTCTGTGATAC+AGG | - | chr4_4:79384123-79384142 | Msa0706420:intron | 25.0% |
| !!! | AATTTCACGGTTTTATAAAC+TGG | + | chr4_4:79384215-79384234 | None:intergenic | 25.0% |
| ! | AGTTTATAAAACCGTGAAAT+TGG | - | chr4_4:79384214-79384233 | Msa0706420:intron | 25.0% |
| ! | AACTATATATACCTGCAAAA+TGG | + | chr4_4:79384377-79384396 | None:intergenic | 25.0% |
| ! | CACACTTTCATAAAAATGTA+CGG | + | chr4_4:79384543-79384562 | None:intergenic | 25.0% |
| !!! | TTAGTTTTGTTGTCAATGAA+CGG | + | chr4_4:79384579-79384598 | None:intergenic | 25.0% |
| ! | ATCCTTAACATATACCTTAA+GGG | + | chr4_4:79384645-79384664 | None:intergenic | 25.0% |
| ! | AATCCTTAACATATACCTTA+AGG | + | chr4_4:79384646-79384665 | None:intergenic | 25.0% |
| ! | GTACATTAACATGTACTTTA+AGG | - | chr4_4:79384774-79384793 | Msa0706420:intron | 25.0% |
| ! | TTTAATTAGATATCCTGGAT+GGG | + | chr4_4:79385020-79385039 | None:intergenic | 25.0% |
| ! | CTAATTAAACTAATCAACAC+CGG | - | chr4_4:79385031-79385050 | Msa0706420:CDS | 25.0% |
| ! | TAATTAAACTAATCAACACC+GGG | - | chr4_4:79385032-79385051 | Msa0706420:CDS | 25.0% |
| AGATTTAGCGTATGTAACTA+AGG | - | chr4_4:79380195-79380214 | Msa0706420:CDS | 30.0% | |
| !! | TCATGAAACTTAGTCGTTTT+TGG | - | chr4_4:79380485-79380504 | Msa0706420:intron | 30.0% |
| GACAATATCTTTGATCCTTA+AGG | - | chr4_4:79380635-79380654 | Msa0706420:intron | 30.0% | |
| !! | CCGACAGAACATTTTTAATT+AGG | - | chr4_4:79380871-79380890 | Msa0706420:CDS | 30.0% |
| !! | CATTTCATTTTTCATTCCCT+TGG | + | chr4_4:79381037-79381056 | None:intergenic | 30.0% |
| GGAATGAAAAATGAAATGCA+GGG | - | chr4_4:79381039-79381058 | Msa0706420:intron | 30.0% | |
| AGAAGTTGAATATTAAGTGG+TGG | - | chr4_4:79381216-79381235 | Msa0706420:CDS | 30.0% | |
| GAGAAAGGCAATTATCAATA+TGG | - | chr4_4:79381342-79381361 | Msa0706420:CDS | 30.0% | |
| ATTTGTGGTAAACTATCAAG+AGG | + | chr4_4:79381372-79381391 | None:intergenic | 30.0% | |
| ! | TACTATGGATTGACTATTTG+TGG | + | chr4_4:79381387-79381406 | None:intergenic | 30.0% |
| AAATAGTCAATCCATAGTAG+TGG | - | chr4_4:79381388-79381407 | Msa0706420:intron | 30.0% | |
| !! | AATCCTTTAGAACAAACTCA+TGG | - | chr4_4:79381417-79381436 | Msa0706420:intron | 30.0% |
| ! | AAACCATGAGTTTGTTCTAA+AGG | + | chr4_4:79381423-79381442 | None:intergenic | 30.0% |
| !!! | GTTGAGGGTTTGTTTTAATT+TGG | - | chr4_4:79381644-79381663 | Msa0706420:intron | 30.0% |
| AAAAACAATCTAGTGCAATC+AGG | + | chr4_4:79381804-79381823 | None:intergenic | 30.0% | |
| CCATCTTTCATATATCTATG+GGG | - | chr4_4:79382006-79382025 | Msa0706420:intron | 30.0% | |
| ATATATCTATGGGGAACAAT+GGG | - | chr4_4:79382015-79382034 | Msa0706420:intron | 30.0% | |
| ATGTGAGTGAAAGAAAAAGA+AGG | - | chr4_4:79382428-79382447 | Msa0706420:intron | 30.0% | |
| TGTGAGTGAAAGAAAAAGAA+GGG | - | chr4_4:79382429-79382448 | Msa0706420:intron | 30.0% | |
| GGGGAATTAATGTAAAAGAA+AGG | - | chr4_4:79382449-79382468 | Msa0706420:intron | 30.0% | |
| !!! | TTTTTTGAGGGAAAATGTGT+AGG | + | chr4_4:79382571-79382590 | None:intergenic | 30.0% |
| ! | CTTAAATGACTTAGTATTGG+AGG | + | chr4_4:79382617-79382636 | None:intergenic | 30.0% |
| CCACTTAAATGACTTAGTAT+TGG | + | chr4_4:79382620-79382639 | None:intergenic | 30.0% | |
| CCAATACTAAGTCATTTAAG+TGG | - | chr4_4:79382617-79382636 | Msa0706420:intron | 30.0% | |
| AATCTAGTGTATAGAGAGAT+GGG | + | chr4_4:79382900-79382919 | None:intergenic | 30.0% | |
| TAATCTAGTGTATAGAGAGA+TGG | + | chr4_4:79382901-79382920 | None:intergenic | 30.0% | |
| GTTACTAGTTAAAGTCATAG+AGG | + | chr4_4:79382986-79383005 | None:intergenic | 30.0% | |
| TAGTAACCATCTAATTATGG+TGG | - | chr4_4:79382999-79383018 | Msa0706420:intron | 30.0% | |
| ACTTAACCACCATAATTAGA+TGG | + | chr4_4:79383008-79383027 | None:intergenic | 30.0% | |
| TCAGCAATTAATTCCCATTA+TGG | + | chr4_4:79383243-79383262 | None:intergenic | 30.0% | |
| CTATGCCTATGACATATATT+TGG | - | chr4_4:79383711-79383730 | Msa0706420:intron | 30.0% | |
| !! | TGGCTTTAGTAAATAGTAAG+AGG | - | chr4_4:79383766-79383785 | Msa0706420:intron | 30.0% |
| ! | TATATTTTACTCTTGGTTGC+AGG | - | chr4_4:79383790-79383809 | Msa0706420:intron | 30.0% |
| AGACATTCATTTGTTCCAAA+TGG | - | chr4_4:79383905-79383924 | Msa0706420:intron | 30.0% | |
| GATGAATTCAAACGTATGTA+TGG | - | chr4_4:79384058-79384077 | Msa0706420:intron | 30.0% | |
| CACAGAAAATTGTTAATGAG+TGG | + | chr4_4:79384119-79384138 | None:intergenic | 30.0% | |
| TTCTTGATAAACTATGTGCA+AGG | - | chr4_4:79384160-79384179 | Msa0706420:intron | 30.0% | |
| TGGATCCATAGATTGAAATA+AGG | + | chr4_4:79384195-79384214 | None:intergenic | 30.0% | |
| CAAGATTCTAACCAATTTCA+CGG | + | chr4_4:79384228-79384247 | None:intergenic | 30.0% | |
| CCAAGAAATCAACAATCATA+AGG | + | chr4_4:79384469-79384488 | None:intergenic | 30.0% | |
| !! | CCTTATGATTGTTGATTTCT+TGG | - | chr4_4:79384466-79384485 | Msa0706420:intron | 30.0% |
| ! | CGTACATTTTTATGAAAGTG+TGG | - | chr4_4:79384541-79384560 | Msa0706420:intron | 30.0% |
| !!! | TAGTTTTGTTGTCAATGAAC+GGG | + | chr4_4:79384578-79384597 | None:intergenic | 30.0% |
| TGACAACAAAACTAAGAAGA+AGG | - | chr4_4:79384584-79384603 | Msa0706420:intron | 30.0% | |
| TACCCTTAAGGTATATGTTA+AGG | - | chr4_4:79384640-79384659 | Msa0706420:intron | 30.0% | |
| AGTATTTGTGGAGAACAATA+AGG | - | chr4_4:79384920-79384939 | Msa0706420:CDS | 30.0% | |
| TTAATTAGATATCCTGGATG+GGG | + | chr4_4:79385019-79385038 | None:intergenic | 30.0% | |
| GTTTAATTAGATATCCTGGA+TGG | + | chr4_4:79385021-79385040 | None:intergenic | 30.0% | |
| AGTGAAGGGTTGTCATAATA+AGG | - | chr4_4:79380147-79380166 | Msa0706420:exon | 35.0% | |
| GTGAAGGGTTGTCATAATAA+GGG | - | chr4_4:79380148-79380167 | Msa0706420:exon | 35.0% | |
| ! | ATTAGAAGCAAAAGCACAAG+TGG | - | chr4_4:79380219-79380238 | Msa0706420:CDS | 35.0% |
| TGGATCTTGTGTTTCAACAA+AGG | + | chr4_4:79380299-79380318 | None:intergenic | 35.0% | |
| GAAGATAATAGGTAGTACCT+TGG | + | chr4_4:79380326-79380345 | None:intergenic | 35.0% | |
| GAAACATGTGAATATAGGTG+AGG | + | chr4_4:79380422-79380441 | None:intergenic | 35.0% | |
| TTATGTGTGCGAGTTTCAAA+TGG | + | chr4_4:79380533-79380552 | None:intergenic | 35.0% | |
| !!! | GACATTTTTCTAGTTGAGCT+AGG | - | chr4_4:79380605-79380624 | Msa0706420:intron | 35.0% |
| TACTACCGGAAAAAAACCAA+TGG | - | chr4_4:79380806-79380825 | Msa0706420:intron | 35.0% | |
| !! | AAATATCACTTTTCGGCCAT+TGG | + | chr4_4:79380825-79380844 | None:intergenic | 35.0% |
| TCTAACAAGTGAAGTATGCA+CGG | - | chr4_4:79380972-79380991 | Msa0706420:intron | 35.0% | |
| GGGAATGAAAAATGAAATGC+AGG | - | chr4_4:79381038-79381057 | Msa0706420:intron | 35.0% | |
| !! | CTCATGCTCAACTATTTTGA+CGG | - | chr4_4:79381299-79381318 | Msa0706420:CDS | 35.0% |
| !!! | TCATGCTCAACTATTTTGAC+GGG | - | chr4_4:79381300-79381319 | Msa0706420:CDS | 35.0% |
| GTAAAAACACATGGAGAGAA+AGG | - | chr4_4:79381327-79381346 | Msa0706420:CDS | 35.0% | |
| GGATTGAAAAACCACTACTA+TGG | + | chr4_4:79381402-79381421 | None:intergenic | 35.0% | |
| TCATCCGATGATATTGTTGA+GGG | - | chr4_4:79381629-79381648 | Msa0706420:intron | 35.0% | |
| CAAACCCTCAACAATATCAT+CGG | + | chr4_4:79381636-79381655 | None:intergenic | 35.0% | |
| ATCAATGGTCTGTATTCAAC+TGG | + | chr4_4:79381698-79381717 | None:intergenic | 35.0% | |
| ! | GATGGTTGGGATTTGAATTT+TGG | - | chr4_4:79381736-79381755 | Msa0706420:intron | 35.0% |
| !! | ATTTTTAGAGAGGGATCTAG+TGG | + | chr4_4:79381928-79381947 | None:intergenic | 35.0% |
| CCCCATAGATATATGAAAGA+TGG | + | chr4_4:79382009-79382028 | None:intergenic | 35.0% | |
| CATATATCTATGGGGAACAA+TGG | - | chr4_4:79382014-79382033 | Msa0706420:intron | 35.0% | |
| ! | TACATTCAACATTTTTCCCC+AGG | + | chr4_4:79382114-79382133 | None:intergenic | 35.0% |
| TAAGATGTAGGTTGTGATAG+TGG | - | chr4_4:79382370-79382389 | Msa0706420:intron | 35.0% | |
| GTGAGTGAAAGAAAAAGAAG+GGG | - | chr4_4:79382430-79382449 | Msa0706420:intron | 35.0% | |
| GTAAAAGAAAGGAAGATGGT+AGG | - | chr4_4:79382460-79382479 | Msa0706420:intron | 35.0% | |
| CTCTGCTATTAAACCTTCAT+TGG | + | chr4_4:79382488-79382507 | None:intergenic | 35.0% | |
| AAGGTTTAATAGCAGAGAAG+TGG | - | chr4_4:79382491-79382510 | Msa0706420:intron | 35.0% | |
| AGGTTTAATAGCAGAGAAGT+GGG | - | chr4_4:79382492-79382511 | Msa0706420:intron | 35.0% | |
| TCTAAGTGGTGCAAGTTAAA+TGG | - | chr4_4:79382658-79382677 | Msa0706420:intron | 35.0% | |
| CATATTATATGCAGAGGTTG+AGG | - | chr4_4:79382858-79382877 | Msa0706420:intron | 35.0% | |
| ATCTAGTGTATAGAGAGATG+GGG | + | chr4_4:79382899-79382918 | None:intergenic | 35.0% | |
| !! | AGGTATTTTTCAGTGATTGG+AGG | - | chr4_4:79383435-79383454 | Msa0706420:intron | 35.0% |
| !! | GGTATTTTTCAGTGATTGGA+GGG | - | chr4_4:79383436-79383455 | Msa0706420:intron | 35.0% |
| ! | AAGATTAGTGGTGCTAAGAA+TGG | + | chr4_4:79383636-79383655 | None:intergenic | 35.0% |
| TTCTTAGCACCACTAATCTT+TGG | - | chr4_4:79383636-79383655 | Msa0706420:intron | 35.0% | |
| CCACACCAAATATATGTCAT+AGG | + | chr4_4:79383719-79383738 | None:intergenic | 35.0% | |
| ! | CCTATGACATATATTTGGTG+TGG | - | chr4_4:79383716-79383735 | Msa0706420:intron | 35.0% |
| TGTTCCTCAAGTACTTGAAA+TGG | - | chr4_4:79383882-79383901 | Msa0706420:intron | 35.0% | |
| GATAGAGATATGGAACCATT+TGG | + | chr4_4:79383923-79383942 | None:intergenic | 35.0% | |
| ATGAACCTGTGATAGAGATA+TGG | + | chr4_4:79383933-79383952 | None:intergenic | 35.0% | |
| !!! | TTGATAATGTTTTCCACCGA+AGG | + | chr4_4:79384023-79384042 | None:intergenic | 35.0% |
| TCAAACGTATGTATGGTTTG+TGG | - | chr4_4:79384065-79384084 | Msa0706420:intron | 35.0% | |
| TACTCAAATAGTGATGTTCG+TGG | - | chr4_4:79384334-79384353 | Msa0706420:intron | 35.0% | |
| ATATACCTGCAAAATGGAGA+GGG | + | chr4_4:79384371-79384390 | None:intergenic | 35.0% | |
| TATATACCTGCAAAATGGAG+AGG | + | chr4_4:79384372-79384391 | None:intergenic | 35.0% | |
| !! | ATTGTTGATTTCTTGGATGC+AGG | - | chr4_4:79384473-79384492 | Msa0706420:intron | 35.0% |
| GATTACTACCCTGAAAGATT+GGG | - | chr4_4:79384495-79384514 | Msa0706420:intron | 35.0% | |
| ATTACTACCCTGAAAGATTG+GGG | - | chr4_4:79384496-79384515 | Msa0706420:intron | 35.0% | |
| TCATAAAAATGTACGGTGCA+TGG | + | chr4_4:79384536-79384555 | None:intergenic | 35.0% | |
| CTAGCTAACTTATACCCTTA+AGG | - | chr4_4:79384628-79384647 | Msa0706420:intron | 35.0% | |
| ATCCTTGCAGATAGTATTTG+TGG | - | chr4_4:79384908-79384927 | Msa0706420:CDS | 35.0% | |
| GGTTGTCATAATAAGGGAAC+AGG | - | chr4_4:79380154-79380173 | Msa0706420:exon | 40.0% | |
| AACACAAGATCCATCTTCCA+AGG | - | chr4_4:79380306-79380325 | Msa0706420:intron | 40.0% | |
| ATAGGTAGTACCTTGGAAGA+TGG | + | chr4_4:79380319-79380338 | None:intergenic | 40.0% | |
| TTGAAACTCGCACACATAAC+TGG | - | chr4_4:79380534-79380553 | Msa0706420:intron | 40.0% | |
| TAGATTGAACACCACGACTT+AGG | + | chr4_4:79380577-79380596 | None:intergenic | 40.0% | |
| !! | CAAGATTCTGGAGTCAAACT+CGG | + | chr4_4:79380748-79380767 | None:intergenic | 40.0% |
| CTCACACTATTGCAAGATTC+TGG | + | chr4_4:79380760-79380779 | None:intergenic | 40.0% | |
| !!! | TTCGGCCATTGGTTTTTTTC+CGG | + | chr4_4:79380814-79380833 | None:intergenic | 40.0% |
| CGTGAATTAACTCACTTAGG+TGG | + | chr4_4:79381254-79381273 | None:intergenic | 40.0% | |
| CAGCGTGAATTAACTCACTT+AGG | + | chr4_4:79381257-79381276 | None:intergenic | 40.0% | |
| ACGGGATGAGTAAAAACACA+TGG | - | chr4_4:79381318-79381337 | Msa0706420:CDS | 40.0% | |
| GAAGAGAAGAAGAGAAAACG+AGG | - | chr4_4:79381485-79381504 | Msa0706420:intron | 40.0% | |
| CTCATCCGATGATATTGTTG+AGG | - | chr4_4:79381628-79381647 | Msa0706420:intron | 40.0% | |
| AGTTGGACTCAAACTCTATG+TGG | + | chr4_4:79381671-79381690 | None:intergenic | 40.0% | |
| CATAGAGTTTGAGTCCAACT+TGG | - | chr4_4:79381671-79381690 | Msa0706420:intron | 40.0% | |
| TGTATTCAACTGGTCCAAGT+TGG | + | chr4_4:79381688-79381707 | None:intergenic | 40.0% | |
| CAGTTTGTGAAATAGCTCCT+TGG | - | chr4_4:79381826-79381845 | Msa0706420:intron | 40.0% | |
| ! | CAACCCATTGATTAGAGATC+CGG | - | chr4_4:79382234-79382253 | Msa0706420:intron | 40.0% |
| GAACCGGATCTCTAATCAAT+GGG | + | chr4_4:79382240-79382259 | None:intergenic | 40.0% | |
| TGAACCGGATCTCTAATCAA+TGG | + | chr4_4:79382241-79382260 | None:intergenic | 40.0% | |
| ATAGTGGCGAAGAGATTACA+AGG | - | chr4_4:79382386-79382405 | Msa0706420:intron | 40.0% | |
| AAGATGGTAGGTACCAATGA+AGG | - | chr4_4:79382472-79382491 | Msa0706420:intron | 40.0% | |
| TTTAATAGCAGAGAAGTGGG+AGG | - | chr4_4:79382495-79382514 | Msa0706420:intron | 40.0% | |
| AGAGAGGAAGAGAAAGAGAT+GGG | - | chr4_4:79382530-79382549 | Msa0706420:intron | 40.0% | |
| GTCATTTAAGTGGTCCAAGT+TGG | - | chr4_4:79382627-79382646 | Msa0706420:intron | 40.0% | |
| !! | CTTAGAGTTTTGGTCCAACT+TGG | + | chr4_4:79382644-79382663 | None:intergenic | 40.0% |
| AGTTGGACCAAAACTCTAAG+TGG | - | chr4_4:79382644-79382663 | Msa0706420:intron | 40.0% | |
| ! | ACTTGCACCACTTAGAGTTT+TGG | + | chr4_4:79382654-79382673 | None:intergenic | 40.0% |
| ACCAAATAGAGCTAAGCACA+CGG | + | chr4_4:79382828-79382847 | None:intergenic | 40.0% | |
| !! | TGTGCTTAGCTCTATTTGGT+AGG | - | chr4_4:79382828-79382847 | Msa0706420:intron | 40.0% |
| !! | GTGCTTAGCTCTATTTGGTA+GGG | - | chr4_4:79382829-79382848 | Msa0706420:intron | 40.0% |
| TGCTGTAGTTAGTACTTGGT+AGG | + | chr4_4:79383184-79383203 | None:intergenic | 40.0% | |
| ATGCTGCTGTAGTTAGTACT+TGG | + | chr4_4:79383188-79383207 | None:intergenic | 40.0% | |
| ! | GATTGGAGGGTGTAATACAT+TGG | - | chr4_4:79383449-79383468 | Msa0706420:intron | 40.0% |
| TAGCTGTTTGTTTAGCTGTC+AGG | - | chr4_4:79383566-79383585 | Msa0706420:intron | 40.0% | |
| AGCTGTTTGTTTAGCTGTCA+GGG | - | chr4_4:79383567-79383586 | Msa0706420:intron | 40.0% | |
| TTTGTTTAGCTGTCAGGGAT+TGG | - | chr4_4:79383572-79383591 | Msa0706420:intron | 40.0% | |
| ACATGACTGCCAAAGATTAG+TGG | + | chr4_4:79383648-79383667 | None:intergenic | 40.0% | |
| TCGTGATTTAGATGTGGAGA+AGG | - | chr4_4:79383850-79383869 | Msa0706420:intron | 40.0% | |
| ! | GTCTCCATTTCAAGTACTTG+AGG | + | chr4_4:79383889-79383908 | None:intergenic | 40.0% |
| TGGTTCCATATCTCTATCAC+AGG | - | chr4_4:79383925-79383944 | Msa0706420:intron | 40.0% | |
| ! | TGGTTTGTGGTAGTTAAGCT+AGG | - | chr4_4:79384078-79384097 | Msa0706420:intron | 40.0% |
| ACAAATTTCTCTTGTCCTGG+TGG | + | chr4_4:79384286-79384305 | None:intergenic | 40.0% | |
| CCAACAAATTTCTCTTGTCC+TGG | + | chr4_4:79384289-79384308 | None:intergenic | 40.0% | |
| CCAGGACAAGAGAAATTTGT+TGG | - | chr4_4:79384286-79384305 | Msa0706420:intron | 40.0% | |
| TGTTGGTATAGCAGAACTCA+AGG | - | chr4_4:79384303-79384322 | Msa0706420:intron | 40.0% | |
| GTTGGTATAGCAGAACTCAA+GGG | - | chr4_4:79384304-79384323 | Msa0706420:intron | 40.0% | |
| TATAGCAGAACTCAAGGGAT+GGG | - | chr4_4:79384309-79384328 | Msa0706420:intron | 40.0% | |
| AGTGATGTTCGTGGATACAT+TGG | - | chr4_4:79384343-79384362 | Msa0706420:intron | 40.0% | |
| GGATTACTACCCTGAAAGAT+TGG | - | chr4_4:79384494-79384513 | Msa0706420:intron | 40.0% | |
| ACAACTTCCCCAATCTTTCA+GGG | + | chr4_4:79384506-79384525 | None:intergenic | 40.0% | |
| AACAACTTCCCCAATCTTTC+AGG | + | chr4_4:79384507-79384526 | None:intergenic | 40.0% | |
| CTCCACAAATACTATCTGCA+AGG | + | chr4_4:79384913-79384932 | None:intergenic | 40.0% | |
| AGTCAACTCCCTGAGATATA+TGG | - | chr4_4:79384975-79384994 | Msa0706420:CDS | 40.0% | |
| GTTTGCCACCATATATCTCA+GGG | + | chr4_4:79384986-79385005 | None:intergenic | 40.0% | |
| AGTTTGCCACCATATATCTC+AGG | + | chr4_4:79384987-79385006 | None:intergenic | 40.0% | |
| CAACAAAGGCTCTCACAAGA+CGG | + | chr4_4:79380285-79380304 | None:intergenic | 45.0% | |
| TCTAGTTGAGCTAGGACAAG+TGG | - | chr4_4:79380613-79380632 | Msa0706420:intron | 45.0% | |
| CTGGAGTCAAACTCGGATAA+AGG | + | chr4_4:79380741-79380760 | None:intergenic | 45.0% | |
| GGAACTTGATGTCCAAGTTG+TGG | - | chr4_4:79381757-79381776 | Msa0706420:intron | 45.0% | |
| TCCAAGTTGTGGCTATGTGA+AGG | - | chr4_4:79381768-79381787 | Msa0706420:intron | 45.0% | |
| ACCTTCACATAGCCACAACT+TGG | + | chr4_4:79381772-79381791 | None:intergenic | 45.0% | |
| ATCCAACGTGAGAGAGAAGA+TGG | + | chr4_4:79381869-79381888 | None:intergenic | 45.0% | |
| TTTAGAGAGGGATCTAGTGG+TGG | + | chr4_4:79381925-79381944 | None:intergenic | 45.0% | |
| TCTATGGGGAACAATGGGAA+AGG | - | chr4_4:79382020-79382039 | Msa0706420:intron | 45.0% | |
| CGGATCTCTAATCAATGGGT+TGG | + | chr4_4:79382236-79382255 | None:intergenic | 45.0% | |
| GAGAGAGGAAGAGAAAGAGA+TGG | - | chr4_4:79382529-79382548 | Msa0706420:intron | 45.0% | |
| CCAAATAGAGCTAAGCACAC+GGG | + | chr4_4:79382827-79382846 | None:intergenic | 45.0% | |
| ! | GCTAAGTGCAGAAGTGGATT+TGG | + | chr4_4:79383550-79383569 | None:intergenic | 45.0% |
| CAAACAGCTAAGTGCAGAAG+TGG | + | chr4_4:79383556-79383575 | None:intergenic | 45.0% | |
| ACGAGCTCGTGATTTAGATG+TGG | - | chr4_4:79383844-79383863 | Msa0706420:intron | 45.0% | |
| TAGCCAAATTGCAGACGACA+AGG | - | chr4_4:79383952-79383971 | Msa0706420:intron | 45.0% | |
| CGACCTATACTCATTGCCTT+CGG | - | chr4_4:79384004-79384023 | Msa0706420:intron | 45.0% | |
| GTATAGCAGAACTCAAGGGA+TGG | - | chr4_4:79384308-79384327 | Msa0706420:intron | 45.0% | |
| ATAGCAGAACTCAAGGGATG+GGG | - | chr4_4:79384310-79384329 | Msa0706420:intron | 45.0% | |
| CAACTCCCTGAGATATATGG+TGG | - | chr4_4:79384978-79384997 | Msa0706420:CDS | 45.0% | |
| !! | ATTTATAATAATTTGATATA+AGG | - | chr4_4:79382322-79382341 | Msa0706420:intron | 5.0% |
| !! | GGCTCTCACAAGACGGATTT+TGG | + | chr4_4:79380278-79380297 | None:intergenic | 50.0% |
| GCACACATAACTGGACGAGT+TGG | - | chr4_4:79380543-79380562 | Msa0706420:intron | 50.0% | |
| TGGAGTTCGAACCTAAGTCG+TGG | - | chr4_4:79380563-79380582 | Msa0706420:intron | 50.0% | |
| GAGCATGAGTTAACTCACGC+AGG | + | chr4_4:79381288-79381307 | None:intergenic | 50.0% | |
| AGAGAAGATGGAGGAGAGAG+GGG | + | chr4_4:79381857-79381876 | None:intergenic | 50.0% | |
| GAGAGAAGATGGAGGAGAGA+GGG | + | chr4_4:79381858-79381877 | None:intergenic | 50.0% | |
| AGAGAGAAGATGGAGGAGAG+AGG | + | chr4_4:79381859-79381878 | None:intergenic | 50.0% | |
| CAACGTGAGAGAGAAGATGG+AGG | + | chr4_4:79381866-79381885 | None:intergenic | 50.0% | |
| CTCCATCTTCTCTCTCACGT+TGG | - | chr4_4:79381864-79381883 | Msa0706420:intron | 50.0% | |
| ACGTCATCTCTCTCTCTTGC+TGG | - | chr4_4:79382086-79382105 | Msa0706420:intron | 50.0% | |
| TCTCTCTCTTGCTGGAACCT+GGG | - | chr4_4:79382094-79382113 | Msa0706420:intron | 50.0% | |
| GAGGAAAGAGTGACAGAGAG+AGG | - | chr4_4:79382514-79382533 | Msa0706420:intron | 50.0% | |
| !! | CCCGTGTGCTTAGCTCTATT+TGG | - | chr4_4:79382824-79382843 | Msa0706420:intron | 50.0% |
| AGAGGTTGAGGTTCGAACCT+CGG | - | chr4_4:79382870-79382889 | Msa0706420:intron | 50.0% | |
| TGTGCCAGTGTCTCAGTTAG+CGG | + | chr4_4:79383217-79383236 | None:intergenic | 50.0% | |
| ACACTGGCACACTGCCATAA+TGG | - | chr4_4:79383226-79383245 | Msa0706420:intron | 50.0% | |
| CACTGGCACACTGCCATAAT+GGG | - | chr4_4:79383227-79383246 | Msa0706420:intron | 50.0% | |
| ! | AGGCCTTGTCGTCTGCAATT+TGG | + | chr4_4:79383958-79383977 | None:intergenic | 50.0% |
| ACCAATCTTGTCGCGTCCTT+GGG | + | chr4_4:79383984-79384003 | None:intergenic | 50.0% | |
| CCACCGAAGGCAATGAGTAT+AGG | + | chr4_4:79384010-79384029 | None:intergenic | 50.0% | |
| CCTATACTCATTGCCTTCGG+TGG | - | chr4_4:79384007-79384026 | Msa0706420:intron | 50.0% | |
| TGATGTATCAGCATGCCACC+AGG | - | chr4_4:79384268-79384287 | Msa0706420:intron | 50.0% | |
| ACTGCAATTAGTCCCCATCC+AGG | - | chr4_4:79385004-79385023 | Msa0706420:CDS | 50.0% | |
| GAGAAGATGGAGGAGAGAGG+GGG | + | chr4_4:79381856-79381875 | None:intergenic | 55.0% | |
| AGAGGGATCTAGTGGTGGTC+TGG | + | chr4_4:79381920-79381939 | None:intergenic | 55.0% | |
| CTCTCTCTCTTGCTGGAACC+TGG | - | chr4_4:79382093-79382112 | Msa0706420:intron | 55.0% | |
| CTCTCTCTTGCTGGAACCTG+GGG | - | chr4_4:79382095-79382114 | Msa0706420:intron | 55.0% | |
| ! | ATAGAGAGATGGGGTGTCCG+AGG | + | chr4_4:79382890-79382909 | None:intergenic | 55.0% |
| GAAGCCGCTAACTGAGACAC+TGG | - | chr4_4:79383210-79383229 | Msa0706420:intron | 55.0% | |
| GACCAATCTTGTCGCGTCCT+TGG | + | chr4_4:79383985-79384004 | None:intergenic | 55.0% | |
| GCCCAAGGACGCGACAAGAT+TGG | - | chr4_4:79383980-79383999 | Msa0706420:intron | 60.0% | |
| ! | TGGCGCCCTCTCCATTTTGC+AGG | - | chr4_4:79384363-79384382 | Msa0706420:intron | 60.0% |
| AGGAGAGAGGGGGTGAGCCA+AGG | + | chr4_4:79381846-79381865 | None:intergenic | 65.0% | |
| GACGACAAGGCCTTCGCCCA+AGG | - | chr4_4:79383965-79383984 | Msa0706420:intron | 65.0% | |
| CTTGTCGCGTCCTTGGGCGA+AGG | + | chr4_4:79383978-79383997 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 79380139 | 79385055 | 79380139 | ID=Msa0706420;Name=Msa0706420 |
| chr4_4 | mRNA | 79380139 | 79385055 | 79380139 | ID=Msa0706420-mRNA-1;Parent=Msa0706420;Name=Msa0706420-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0.75|0.8|1|1|1|5|21|235 |
| chr4_4 | exon | 79380139 | 79380276 | 79380139 | ID=Msa0706420-mRNA-1:exon:25559;Parent=Msa0706420-mRNA-1 |
| chr4_4 | exon | 79380810 | 79380915 | 79380810 | ID=Msa0706420-mRNA-1:exon:25558;Parent=Msa0706420-mRNA-1 |
| chr4_4 | exon | 79381013 | 79381049 | 79381013 | ID=Msa0706420-mRNA-1:exon:25557;Parent=Msa0706420-mRNA-1 |
| chr4_4 | exon | 79381124 | 79381382 | 79381124 | ID=Msa0706420-mRNA-1:exon:25556;Parent=Msa0706420-mRNA-1 |
| chr4_4 | exon | 79384867 | 79385055 | 79384867 | ID=Msa0706420-mRNA-1:exon:25555;Parent=Msa0706420-mRNA-1 |
| chr4_4 | CDS | 79384867 | 79385055 | 79384867 | ID=Msa0706420-mRNA-1:cds;Parent=Msa0706420-mRNA-1 |
| chr4_4 | CDS | 79381124 | 79381382 | 79381124 | ID=Msa0706420-mRNA-1:cds;Parent=Msa0706420-mRNA-1 |
| chr4_4 | CDS | 79381013 | 79381049 | 79381013 | ID=Msa0706420-mRNA-1:cds;Parent=Msa0706420-mRNA-1 |
| chr4_4 | CDS | 79380810 | 79380915 | 79380810 | ID=Msa0706420-mRNA-1:cds;Parent=Msa0706420-mRNA-1 |
| chr4_4 | CDS | 79380160 | 79380276 | 79380160 | ID=Msa0706420-mRNA-1:cds;Parent=Msa0706420-mRNA-1 |
| chr4_4 | three_prime_UTR | 79380139 | 79380159 | 79380139 | ID=Msa0706420-mRNA-1:three_prime_utr;Parent=Msa0706420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
