Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0824910 | XP_039690834.1 | 91.388 | 569 | 31 | 2 | 1 | 556 | 1 | 564 | 0.0 | 996 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0824910 | G7K4J5 | 91.388 | 569 | 31 | 2 | 1 | 556 | 1 | 564 | 0.0 | 996 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0073670 | Msa0824910 | 0.819884 | 9.184915e-53 | -8.615850e-47 |
| Msa0639120 | Msa0824910 | 0.819397 | 1.186384e-52 | -8.615850e-47 |
| Msa0678860 | Msa0824910 | 0.801226 | 9.951176e-49 | -8.615850e-47 |
| Msa0687630 | Msa0824910 | 0.803603 | 3.221434e-49 | -8.615850e-47 |
| Msa0706970 | Msa0824910 | 0.811400 | 7.136455e-51 | -8.615850e-47 |
| Msa0707390 | Msa0824910 | 0.811320 | 7.427166e-51 | -8.615850e-47 |
| Msa0735310 | Msa0824910 | 0.808970 | 2.384273e-50 | -8.615850e-47 |
| Msa0740040 | Msa0824910 | 0.942470 | 6.792616e-102 | -8.615850e-47 |
| Msa0750920 | Msa0824910 | 0.807648 | 4.561870e-50 | -8.615850e-47 |
| Msa0755340 | Msa0824910 | 0.800323 | 1.521006e-48 | -8.615850e-47 |
| Msa0787750 | Msa0824910 | 0.808180 | 3.514789e-50 | -8.615850e-47 |
| Msa0787810 | Msa0824910 | 0.933502 | 1.702667e-95 | -8.615850e-47 |
| Msa0797750 | Msa0824910 | 0.801057 | 1.077462e-48 | -8.615850e-47 |
| Msa0814250 | Msa0824910 | 0.800085 | 1.700383e-48 | -8.615850e-47 |
| Msa0814320 | Msa0824910 | 0.802753 | 4.831322e-49 | -8.615850e-47 |
| Msa0824640 | Msa0824910 | 0.826580 | 2.508868e-54 | -8.615850e-47 |
| Msa0824730 | Msa0824910 | 0.818875 | 1.560245e-52 | -8.615850e-47 |
| Msa0824910 | Msa0836130 | 0.800478 | 1.414672e-48 | -8.615850e-47 |
| Msa0824910 | Msa0863970 | 0.918098 | 2.366669e-86 | -8.615850e-47 |
| Msa0824910 | Msa0864010 | 0.832772 | 7.810180e-56 | -8.615850e-47 |
| Msa0824910 | Msa0866120 | 0.805509 | 1.289996e-49 | -8.615850e-47 |
| Msa0824910 | Msa0900630 | 0.800720 | 1.262293e-48 | -8.615850e-47 |
| Msa0824910 | Msa0905550 | 0.806450 | 8.177903e-50 | -8.615850e-47 |
| Msa0824910 | Msa0937550 | 0.813375 | 2.641857e-51 | -8.615850e-47 |
| Msa0824910 | Msa0976330 | 0.813401 | 2.608024e-51 | -8.615850e-47 |
| Msa0824910 | Msa1018790 | 0.802738 | 4.865836e-49 | -8.615850e-47 |
| Msa0824910 | Msa1107440 | 0.810194 | 1.300899e-50 | -8.615850e-47 |
| Msa0824910 | Msa1150970 | 0.833632 | 4.770905e-56 | -8.615850e-47 |
| Msa0824910 | Msa1174100 | 0.815868 | 7.413272e-52 | -8.615850e-47 |
| Msa0824910 | Msa1184370 | 0.815234 | 1.026444e-51 | -8.615850e-47 |
| Msa0824910 | Msa1201830 | 0.816743 | 4.724162e-52 | -8.615850e-47 |
| Msa0824910 | Msa1227690 | 0.802104 | 6.573129e-49 | -8.615850e-47 |
| Msa0824910 | Msa1246530 | -0.800923 | 1.147342e-48 | -8.615850e-47 |
| Msa0824910 | Msa1294840 | 0.808135 | 3.593697e-50 | -8.615850e-47 |
| Msa0824910 | Msa1299360 | 0.822545 | 2.236811e-53 | -8.615850e-47 |
| Msa0824910 | Msa1307950 | 0.812037 | 5.185629e-51 | -8.615850e-47 |
| Msa0824910 | Msa1344850 | 0.821360 | 4.207572e-53 | -8.615850e-47 |
| Msa0824910 | Msa1365150 | 0.814983 | 1.166720e-51 | -8.615850e-47 |
| Msa0824910 | Msa1365200 | 0.824710 | 6.964160e-54 | -8.615850e-47 |
| Msa0824910 | Msa1387190 | 0.804380 | 2.221398e-49 | -8.615850e-47 |
| Msa0824910 | Msa1397050 | 0.815477 | 9.060951e-52 | -8.615850e-47 |
| Msa0824910 | Msa1404190 | 0.813122 | 3.003005e-51 | -8.615850e-47 |
| Msa0824910 | Msa1438640 | 0.816333 | 5.837227e-52 | -8.615850e-47 |
| Msa0824910 | Msa1465080 | 0.822940 | 1.810550e-53 | -8.615850e-47 |
| Msa0824910 | Msa1466990 | 0.804462 | 2.134952e-49 | -8.615850e-47 |
| Msa0134130 | Msa0824910 | 0.800909 | 1.155211e-48 | -8.615850e-47 |
| Msa0169570 | Msa0824910 | 0.802207 | 6.259223e-49 | -8.615850e-47 |
| Msa0413450 | Msa0824910 | 0.812404 | 4.313551e-51 | -8.615850e-47 |
| Msa0469910 | Msa0824910 | -0.833903 | 4.081000e-56 | -8.615850e-47 |
| Msa0259560 | Msa0824910 | 0.807932 | 3.970614e-50 | -8.615850e-47 |
| Msa0291520 | Msa0824910 | 0.811088 | 8.337352e-51 | -8.615850e-47 |
| Msa0332400 | Msa0824910 | 0.804078 | 2.567464e-49 | -8.615850e-47 |
| Msa0505150 | Msa0824910 | 0.814014 | 1.911310e-51 | -8.615850e-47 |
| Msa0560470 | Msa0824910 | 0.809348 | 1.977839e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0824910 | MtrunA17_Chr5g0445961 | 91.388 | 569 | 31 | 2 | 1 | 556 | 1 | 564 | 0.0 | 996 |
| Msa0824910 | MtrunA17_Chr5g0445861 | 48.077 | 416 | 137 | 9 | 1 | 392 | 1 | 361 | 1.44e-90 | 285 |
| Msa0824910 | MtrunA17_Chr5g0445831 | 37.778 | 405 | 178 | 11 | 1 | 382 | 1 | 354 | 2.95e-50 | 178 |
| Msa0824910 | MtrunA17_Chr5g0445771 | 35.714 | 406 | 155 | 8 | 3 | 404 | 1 | 304 | 1.17e-47 | 173 |
| Msa0824910 | MtrunA17_Chr5g0445881 | 46.286 | 175 | 74 | 2 | 252 | 406 | 127 | 301 | 1.88e-33 | 133 |
| Msa0824910 | MtrunA17_Chr5g0445881 | 35.207 | 338 | 162 | 10 | 1 | 329 | 1 | 290 | 3.89e-29 | 120 |
| Msa0824910 | MtrunA17_Chr5g0445811 | 37.500 | 248 | 102 | 6 | 154 | 382 | 30 | 243 | 3.89e-28 | 114 |
| Msa0824910 | MtrunA17_Chr5g0446181 | 41.593 | 226 | 105 | 6 | 1 | 216 | 1 | 209 | 4.17e-28 | 115 |
| Msa0824910 | MtrunA17_Chr5g0446171 | 35.196 | 179 | 82 | 4 | 1 | 176 | 1 | 148 | 2.08e-17 | 82.0 |
| Msa0824910 | MtrunA17_Chr1g0185261 | 40.441 | 136 | 55 | 3 | 255 | 389 | 65 | 175 | 2.27e-16 | 78.6 |
| Msa0824910 | MtrunA17_Chr5g0446231 | 38.462 | 130 | 63 | 3 | 40 | 166 | 1 | 116 | 2.93e-13 | 72.4 |
| Msa0824910 | MtrunA17_Chr5g0413371 | 35.152 | 165 | 85 | 2 | 35 | 199 | 1 | 143 | 3.48e-13 | 72.4 |
| Msa0824910 | MtrunA17_Chr5g0446191 | 38.168 | 131 | 64 | 3 | 39 | 166 | 15 | 131 | 1.11e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 126 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGTTAGTAACTTTATTT+TGG | 0.155616 | 5_3:+64618634 | Msa0824910:three_prime_UTR |
| AGTAATCAGTAACTTTATTT+TGG | 0.175697 | 5_3:+64618554 | Msa0824910:three_prime_UTR |
| GTCTCAACACTTCAAGTTCA+TGG | 0.265620 | 5_3:-64616763 | None:intergenic |
| GCTTAAATACTTACATTTGT+AGG | 0.271720 | 5_3:-64618112 | None:intergenic |
| GGAGAAACTCTTAAGGTTAA+AGG | 0.271874 | 5_3:+64616526 | Msa0824910:CDS |
| TGAAACAGTAAACAAGAATT+TGG | 0.280388 | 5_3:+64617234 | Msa0824910:CDS |
| AATTGTTAGTAACTTTGTTT+TGG | 0.287134 | 5_3:+64618712 | Msa0824910:three_prime_UTR |
| GCATGCATGGACCAATCTTT+TGG | 0.292810 | 5_3:-64618443 | None:intergenic |
| ATTTAAGCTCATCAATAGTT+TGG | 0.295375 | 5_3:-64617389 | None:intergenic |
| GACTGGTGAGATGGAGAATA+AGG | 0.296831 | 5_3:+64617126 | Msa0824910:CDS |
| AGTTGGAGTGTGAGGTTAAT+AGG | 0.300952 | 5_3:+64616882 | Msa0824910:CDS |
| AGTTGAAGTGTGAGGTTAAT+AGG | 0.300952 | 5_3:+64617050 | Msa0824910:CDS |
| TGAGATGGAGAATAAGGTTT+TGG | 0.325391 | 5_3:+64617132 | Msa0824910:CDS |
| TTAATAAGTTGAAGGAAGAT+AGG | 0.328036 | 5_3:+64616981 | Msa0824910:CDS |
| GTCAAAATCATTACATGTTA+AGG | 0.357681 | 5_3:+64618215 | Msa0824910:CDS |
| AGCAATACTTGAACAAGATC+TGG | 0.362926 | 5_3:-64616377 | None:intergenic |
| GGGCTGCTTGCATCTTTGCC+TGG | 0.376137 | 5_3:-64618345 | None:intergenic |
| GTCCATGCATGCAGGCAATT+AGG | 0.379329 | 5_3:+64618454 | Msa0824910:three_prime_UTR |
| GGAAAGACAACAACTTGAAA+TGG | 0.380275 | 5_3:+64616505 | Msa0824910:CDS |
| TGAAAGAGTTGAAGGTGTTT+TGG | 0.381818 | 5_3:+64616424 | Msa0824910:CDS |
| GGTTGAAGTGTGAGGTTGAC+AGG | 0.395371 | 5_3:+64616714 | Msa0824910:CDS |
| CTTAGAGCAGAATGTTGAAA+TGG | 0.410048 | 5_3:+64616484 | Msa0824910:CDS |
| ATACTTACATTTGTAGGATC+AGG | 0.410411 | 5_3:-64618106 | None:intergenic |
| GATAACAATACCACAATAGA+TGG | 0.410818 | 5_3:-64618602 | None:intergenic |
| TGTAGCACCTTCTGCAAGTC+AGG | 0.411433 | 5_3:+64618042 | Msa0824910:CDS |
| ATGGAAACTCTTGACTTAGA+AGG | 0.415536 | 5_3:+64616344 | Msa0824910:CDS |
| GCAACTGGTGCATTTGCAAC+AGG | 0.416299 | 5_3:-64618070 | None:intergenic |
| TTGAAATGGAGAAACTCTTA+AGG | 0.417844 | 5_3:+64616519 | Msa0824910:CDS |
| TAATAGGTTGAAGGAAGATA+TGG | 0.418849 | 5_3:+64616898 | Msa0824910:CDS |
| GATCTTGTTCAAGTATTGCT+TGG | 0.420517 | 5_3:+64616380 | Msa0824910:CDS |
| TTGAAAACCAAGATGATTGC+TGG | 0.423791 | 5_3:+64618321 | Msa0824910:CDS |
| GCCTGGACCAGCAATCATCT+TGG | 0.434652 | 5_3:-64618328 | None:intergenic |
| AAGGAAGATAGGGTGGAGGA+TGG | 0.446522 | 5_3:+64616992 | Msa0824910:CDS |
| AAGTTATAATGCTCTCTTGA+AGG | 0.449736 | 5_3:+64616607 | Msa0824910:CDS |
| GAGTGATGAGCTAGAGTGTG+AGG | 0.452371 | 5_3:+64616958 | Msa0824910:CDS |
| TCAGCAGCCATAAAATCAAC+TGG | 0.457108 | 5_3:-64617445 | None:intergenic |
| TTTGGAGTTGACAAAGTTGA+AGG | 0.457739 | 5_3:+64617150 | Msa0824910:CDS |
| TTTGTAGGATCAGGCACATA+AGG | 0.460936 | 5_3:-64618097 | None:intergenic |
| TTGACATATTACTCGCGTCT+TGG | 0.462570 | 5_3:+64617314 | Msa0824910:CDS |
| AAAGTTAAAGATGCATCATC+AGG | 0.464717 | 5_3:+64617499 | Msa0824910:CDS |
| AGTCAGGTCTAGTCATGTTA+AGG | 0.465936 | 5_3:+64618254 | Msa0824910:CDS |
| GAAACTTATGAAAGAGTTGA+AGG | 0.466139 | 5_3:+64616416 | Msa0824910:CDS |
| GTGTGAGGTTAATAGGTTGA+AGG | 0.471254 | 5_3:+64616889 | Msa0824910:CDS |
| GGCACATAAGGTATTGCAAC+TGG | 0.471489 | 5_3:-64618085 | None:intergenic |
| CACTGTCTTCAATTACCAAT+GGG | 0.473098 | 5_3:-64618365 | None:intergenic |
| GTGTGAGGTTAATAAGTTGA+AGG | 0.473823 | 5_3:+64616973 | Msa0824910:CDS |
| CTTGAACCTAAAATCGAACC+TGG | 0.474651 | 5_3:+64616257 | Msa0824910:CDS |
| TTAATAAGTTGAAAGAAGAA+AGG | 0.475430 | 5_3:+64616813 | Msa0824910:CDS |
| ACCAAGATGATTGCTGGTCC+AGG | 0.475629 | 5_3:+64618327 | Msa0824910:CDS |
| TCTATCACTAGACCTGACTT+TGG | 0.479541 | 5_3:-64618289 | None:intergenic |
| TTCTAAGAAGGAGAAACGTT+GGG | 0.480244 | 5_3:+64616693 | Msa0824910:CDS |
| AGCTTAAATGTCTCTGGTGG+TGG | 0.480275 | 5_3:+64617403 | Msa0824910:CDS |
| AAAGAAGAAAGGGTGGAGGA+TGG | 0.483082 | 5_3:+64616824 | Msa0824910:CDS |
| ATGTCAAGAAAGCCAAAGTC+AGG | 0.490710 | 5_3:+64618238 | Msa0824910:CDS |
| CCAGAGAGAGACCAAAAGAT+TGG | 0.491518 | 5_3:+64618432 | Msa0824910:three_prime_UTR |
| GTCCTAATTGCCTGCATGCA+TGG | 0.492307 | 5_3:-64618456 | None:intergenic |
| TCTGCTCTAAGAGTTGAATC+TGG | 0.493051 | 5_3:-64616472 | None:intergenic |
| AGACTTCATATGACATTAGC+AGG | 0.496406 | 5_3:+64618484 | Msa0824910:three_prime_UTR |
| CTTGCAGAAGGTGCTACAAT+TGG | 0.498019 | 5_3:-64618037 | None:intergenic |
| ATCAAGAATCACGTGGTTGG+AGG | 0.498362 | 5_3:-64616288 | None:intergenic |
| TTGATGAGCTTAAATGTCTC+TGG | 0.501390 | 5_3:+64617397 | Msa0824910:CDS |
| AACATGACTAGACCTGACTT+TGG | 0.503870 | 5_3:-64618250 | None:intergenic |
| TAGGTTCAAGGTTCATGGTA+AGG | 0.506024 | 5_3:-64616244 | None:intergenic |
| AAGGAAGATATGGTGGAGGG+TGG | 0.509218 | 5_3:+64616908 | Msa0824910:CDS |
| TAATAAGTTGAAGGAAGATA+GGG | 0.510480 | 5_3:+64616982 | Msa0824910:CDS |
| GGTACTTCGACATGACCAAC+TGG | 0.512667 | 5_3:-64618010 | None:intergenic |
| GCGGATGATGGCTGTGAGCT+TGG | 0.513466 | 5_3:+64617088 | Msa0824910:CDS |
| ACTCTTAAGGTTAAAGGCTG+AGG | 0.519219 | 5_3:+64616532 | Msa0824910:CDS |
| TAATAAGTTGAAAGAAGAAA+GGG | 0.520930 | 5_3:+64616814 | Msa0824910:CDS |
| AGAGACGAAGATGATGAAGT+TGG | 0.521296 | 5_3:+64616311 | Msa0824910:CDS |
| GTTGAAGGAAGATAGGGTGG+AGG | 0.521973 | 5_3:+64616988 | Msa0824910:CDS |
| AAGAAGAAAGGGTGGAGGAT+GGG | 0.524336 | 5_3:+64616825 | Msa0824910:CDS |
| TTTCTAAGAAGGAGAAACGT+TGG | 0.528902 | 5_3:+64616692 | Msa0824910:CDS |
| GGAAGAGTTAAAGAAAAGAG+AGG | 0.532934 | 5_3:+64616553 | Msa0824910:CDS |
| AGGAAGATAGGGTGGAGGAT+GGG | 0.537473 | 5_3:+64616993 | Msa0824910:CDS |
| TAGGTTGAAGGAAGATATGG+TGG | 0.538319 | 5_3:+64616901 | Msa0824910:CDS |
| TGGCAACTATAAGAGAATTG+AGG | 0.540056 | 5_3:+64617254 | Msa0824910:CDS |
| GAAGATTGTATTGTGTGGGC+TGG | 0.542503 | 5_3:+64617184 | Msa0824910:CDS |
| TAAGTTGAAGGAAGATAGGG+TGG | 0.544598 | 5_3:+64616985 | Msa0824910:CDS |
| TGAAGTTGGAGCATTTCCTA+TGG | 0.545820 | 5_3:+64616325 | Msa0824910:CDS |
| TGGTTGGAGGAAGGTGACCC+AGG | 0.547723 | 5_3:-64616275 | None:intergenic |
| GTGTGAGGTTAATAGGTTGA+CGG | 0.547979 | 5_3:+64617057 | Msa0824910:CDS |
| AGGAAGATATGGTGGAGGGT+GGG | 0.550407 | 5_3:+64616909 | Msa0824910:CDS |
| ATTGCTTGGATCTTTACAGA+TGG | 0.550510 | 5_3:+64616394 | Msa0824910:CDS |
| TCACTGTCTTCAATTACCAA+TGG | 0.555333 | 5_3:-64618366 | None:intergenic |
| GCAATACTTGAACAAGATCT+GGG | 0.555962 | 5_3:-64616376 | None:intergenic |
| AAAGATTGGTCCATGCATGC+AGG | 0.559005 | 5_3:+64618446 | Msa0824910:three_prime_UTR |
| CAAAGATGCAAGCAGCCCAT+TGG | 0.565479 | 5_3:+64618350 | Msa0824910:CDS |
| TCTATCAAGAATCACGTGGT+TGG | 0.566169 | 5_3:-64616291 | None:intergenic |
| TCTGGTGGTGGAAACAATGA+GGG | 0.566395 | 5_3:+64617415 | Msa0824910:CDS |
| TAAGTTGAAAGAAGAAAGGG+TGG | 0.575684 | 5_3:+64616817 | Msa0824910:CDS |
| CTCTGGTGGTGGAAACAATG+AGG | 0.577778 | 5_3:+64617414 | Msa0824910:CDS |
| AGTTGGTCATGTCGAAGTAC+CGG | 0.578493 | 5_3:+64618012 | Msa0824910:CDS |
| TATAATGCTCTCTTGAAGGA+AGG | 0.584603 | 5_3:+64616611 | Msa0824910:CDS |
| GAATGGTGAGTTGGAGTGTG+AGG | 0.586676 | 5_3:+64616790 | Msa0824910:CDS |
| GAGGGTGATGATATTGATGA+AGG | 0.589257 | 5_3:+64618390 | Msa0824910:CDS |
| GTTGAAAGAAGAAAGGGTGG+AGG | 0.590291 | 5_3:+64616820 | Msa0824910:CDS |
| AGAATCACGTGGTTGGAGGA+AGG | 0.592347 | 5_3:-64616284 | None:intergenic |
| GATGATATTGATGAAGGTGA+TGG | 0.594476 | 5_3:+64618396 | Msa0824910:CDS |
| GAAGGTGCTACAATTGGTGC+CGG | 0.596125 | 5_3:-64618031 | None:intergenic |
| TCTAAGTCAAGAGTTTCCAT+AGG | 0.597975 | 5_3:-64616341 | None:intergenic |
| GTTGAAGGAAGATATGGTGG+AGG | 0.598207 | 5_3:+64616904 | Msa0824910:CDS |
| CTGCATTGTTCTGCACCAGT+TGG | 0.601057 | 5_3:+64617995 | Msa0824910:CDS |
| GTGTTATGAACCATCTATTG+TGG | 0.602181 | 5_3:+64618592 | Msa0824910:three_prime_UTR |
| GAGACAAAAGAATGGTGAGT+TGG | 0.607745 | 5_3:+64616781 | Msa0824910:CDS |
| TTGAAGGAAGATATGGTGGA+GGG | 0.608134 | 5_3:+64616905 | Msa0824910:CDS |
| TCTCTTGAAGGAAGGCAAGA+CGG | 0.610347 | 5_3:+64616619 | Msa0824910:CDS |
| GAATGATGAGTTGGAGTGTG+AGG | 0.613027 | 5_3:+64616874 | Msa0824910:CDS |
| GTAATTGAAGACAGTGATGA+GGG | 0.618776 | 5_3:+64618372 | Msa0824910:CDS |
| TAAGTTGACACAAGAAAGTG+AGG | 0.628177 | 5_3:+64616658 | Msa0824910:CDS |
| AAACGTTGGGTTGAAGTGTG+AGG | 0.632328 | 5_3:+64616706 | Msa0824910:CDS |
| GGAGGAAGATTGTATTGTGT+GGG | 0.635950 | 5_3:+64617180 | Msa0824910:CDS |
| GATACAGAGACCGCTCGAAG+TGG | 0.636412 | 5_3:-64618681 | None:intergenic |
| GGATCAACCTGACTTGCAGA+AGG | 0.648405 | 5_3:-64618049 | None:intergenic |
| CTGGTGGTGGAAACAATGAG+GGG | 0.648857 | 5_3:+64617416 | Msa0824910:CDS |
| GAAGTGTTGAGACAAAAGAA+TGG | 0.649570 | 5_3:+64616773 | Msa0824910:CDS |
| GGGAGGAAGATTGTATTGTG+TGG | 0.661249 | 5_3:+64617179 | Msa0824910:CDS |
| CGTCTCTATCAAGAATCACG+TGG | 0.663157 | 5_3:-64616295 | None:intergenic |
| GAATGATGAGTTGAAGTGTG+AGG | 0.673142 | 5_3:+64617042 | Msa0824910:CDS |
| GGTAATTGAAGACAGTGATG+AGG | 0.677445 | 5_3:+64618371 | Msa0824910:CDS |
| TTGAACCTAAAATCGAACCT+GGG | 0.681572 | 5_3:+64616258 | Msa0824910:CDS |
| ATGAGCTTAAATGTCTCTGG+TGG | 0.688563 | 5_3:+64617400 | Msa0824910:CDS |
| GTGTTATGAACCACTTCGAG+CGG | 0.691445 | 5_3:+64618671 | Msa0824910:three_prime_UTR |
| CTTCATATGACATTAGCAGG+AGG | 0.696178 | 5_3:+64618487 | Msa0824910:three_prime_UTR |
| TGGTGGTGGAAACAATGAGG+GGG | 0.698952 | 5_3:+64617417 | Msa0824910:CDS |
| GCAGCCATAAAATCAACTGG+AGG | 0.708098 | 5_3:-64617442 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAGTGTAAAGAAATTATA+GGG | - | chr5_3:64617734-64617753 | None:intergenic | 15.0% |
| !! | ATATAGTGTAAAGAAATTAT+AGG | - | chr5_3:64617735-64617754 | None:intergenic | 15.0% |
| !! | AAATACAAACATTATACATA+AGG | - | chr5_3:64617785-64617804 | None:intergenic | 15.0% |
| !!! | TTTATACATTATTTTAGACT+AGG | + | chr5_3:64617899-64617918 | Msa0824910:intron | 15.0% |
| !!! | TTATACATTATTTTAGACTA+GGG | + | chr5_3:64617900-64617919 | Msa0824910:intron | 15.0% |
| !!! | TATTGTTAGTAACTTTATTT+TGG | + | chr5_3:64618634-64618653 | Msa0824910:three_prime_UTR | 15.0% |
| !!! | AAACTATTGATTTTCTAAGA+AGG | + | chr5_3:64616681-64616700 | Msa0824910:CDS | 20.0% |
| !!! | TTAATAAGTTGAAAGAAGAA+AGG | + | chr5_3:64616813-64616832 | Msa0824910:CDS | 20.0% |
| !!! | TAATAAGTTGAAAGAAGAAA+GGG | + | chr5_3:64616814-64616833 | Msa0824910:CDS | 20.0% |
| !! | TATATATGATTTCATCAATG+AGG | - | chr5_3:64617686-64617705 | None:intergenic | 20.0% |
| !! | ATGAAATCATATATATTCGA+AGG | + | chr5_3:64617691-64617710 | Msa0824910:intron | 20.0% |
| !!! | ATATTTTATTGTATCTCTAG+TGG | + | chr5_3:64617819-64617838 | Msa0824910:intron | 20.0% |
| !!! | TATTTTATTGTATCTCTAGT+GGG | + | chr5_3:64617820-64617839 | Msa0824910:intron | 20.0% |
| !!! | AGTAATCAGTAACTTTATTT+TGG | + | chr5_3:64618554-64618573 | Msa0824910:three_prime_UTR | 20.0% |
| !!! | AATTGTTAGTAACTTTGTTT+TGG | + | chr5_3:64618712-64618731 | Msa0824910:three_prime_UTR | 20.0% |
| ! | TTTAGCTGAAAAACTGAAAA+TGG | - | chr5_3:64616190-64616209 | None:intergenic | 25.0% |
| !! | TTAATAAGTTGAAGGAAGAT+AGG | + | chr5_3:64616981-64617000 | Msa0824910:CDS | 25.0% |
| !! | TAATAAGTTGAAGGAAGATA+GGG | + | chr5_3:64616982-64617001 | Msa0824910:CDS | 25.0% |
| ! | TGAAACAGTAAACAAGAATT+TGG | + | chr5_3:64617234-64617253 | Msa0824910:CDS | 25.0% |
| ! | ATTTAAGCTCATCAATAGTT+TGG | - | chr5_3:64617392-64617411 | None:intergenic | 25.0% |
| !! | TGGGTATTGTATTTCTATTA+GGG | + | chr5_3:64617839-64617858 | Msa0824910:intron | 25.0% |
| ! | ACATATCAGCTAAGATATTT+GGG | - | chr5_3:64617940-64617959 | None:intergenic | 25.0% |
| ! | AACATATCAGCTAAGATATT+TGG | - | chr5_3:64617941-64617960 | None:intergenic | 25.0% |
| ! | GCTTAAATACTTACATTTGT+AGG | - | chr5_3:64618115-64618134 | None:intergenic | 25.0% |
| ! | GTCAAAATCATTACATGTTA+AGG | + | chr5_3:64618215-64618234 | Msa0824910:CDS | 25.0% |
| CAGAAAAATGCAAACTTTAG+CGG | - | chr5_3:64616224-64616243 | None:intergenic | 30.0% | |
| GAAACTTATGAAAGAGTTGA+AGG | + | chr5_3:64616416-64616435 | Msa0824910:CDS | 30.0% | |
| TTGAAATGGAGAAACTCTTA+AGG | + | chr5_3:64616519-64616538 | Msa0824910:CDS | 30.0% | |
| AAGTTATAATGCTCTCTTGA+AGG | + | chr5_3:64616607-64616626 | Msa0824910:CDS | 30.0% | |
| GAGAAAAAAGAATGATGAGT+TGG | + | chr5_3:64616865-64616884 | Msa0824910:CDS | 30.0% | |
| ! | TAATAGGTTGAAGGAAGATA+TGG | + | chr5_3:64616898-64616917 | Msa0824910:CDS | 30.0% |
| ! | TAATAGGTTGACGGAAAAAA+CGG | + | chr5_3:64617066-64617085 | Msa0824910:CDS | 30.0% |
| TGACAAAGTTGAAGGAAAAA+TGG | + | chr5_3:64617158-64617177 | Msa0824910:CDS | 30.0% | |
| GACAAAGTTGAAGGAAAAAT+GGG | + | chr5_3:64617159-64617178 | Msa0824910:CDS | 30.0% | |
| GCTGGAATTGAGATTAAAAA+TGG | + | chr5_3:64617202-64617221 | Msa0824910:CDS | 30.0% | |
| TCTTGCATGAAAAAGTTTCA+AGG | + | chr5_3:64617353-64617372 | Msa0824910:CDS | 30.0% | |
| AAAGTTAAAGATGCATCATC+AGG | + | chr5_3:64617499-64617518 | Msa0824910:CDS | 30.0% | |
| CGTGTGATCAAATAAATGTT+TGG | + | chr5_3:64617541-64617560 | Msa0824910:intron | 30.0% | |
| AAATGTTTGGTTAGATTGCT+AGG | + | chr5_3:64617554-64617573 | Msa0824910:intron | 30.0% | |
| ACTACATGCTTCAATAAAAC+AGG | - | chr5_3:64617608-64617627 | None:intergenic | 30.0% | |
| !! | GTTTTATTGAAGCATGTAGT+AGG | + | chr5_3:64617608-64617627 | Msa0824910:intron | 30.0% |
| !! | ATAACTTGTTTGAACTTGTG+AGG | + | chr5_3:64617640-64617659 | Msa0824910:intron | 30.0% |
| TCGAAGGTTAAATTAGTAAG+TGG | + | chr5_3:64617707-64617726 | Msa0824910:intron | 30.0% | |
| ! | GTGGGTATTGTATTTCTATT+AGG | + | chr5_3:64617838-64617857 | Msa0824910:intron | 30.0% |
| ! | GGGTATTGTATTTCTATTAG+GGG | + | chr5_3:64617840-64617859 | Msa0824910:intron | 30.0% |
| ATACTTACATTTGTAGGATC+AGG | - | chr5_3:64618109-64618128 | None:intergenic | 30.0% | |
| ! | TGTAAGTTGTGTATTTTCCA+GGG | + | chr5_3:64618180-64618199 | Msa0824910:intron | 30.0% |
| ! | GTATTTTCCAGGGAAATAAA+AGG | + | chr5_3:64618190-64618209 | Msa0824910:intron | 30.0% |
| GATAACAATACCACAATAGA+TGG | - | chr5_3:64618605-64618624 | None:intergenic | 30.0% | |
| !!! | GATTTTAGGTTCAAGGTTCA+TGG | - | chr5_3:64616252-64616271 | None:intergenic | 35.0% |
| TTGAACCTAAAATCGAACCT+GGG | + | chr5_3:64616258-64616277 | Msa0824910:CDS | 35.0% | |
| TCTAAGTCAAGAGTTTCCAT+AGG | - | chr5_3:64616344-64616363 | None:intergenic | 35.0% | |
| ATGGAAACTCTTGACTTAGA+AGG | + | chr5_3:64616344-64616363 | Msa0824910:CDS | 35.0% | |
| GCAATACTTGAACAAGATCT+GGG | - | chr5_3:64616379-64616398 | None:intergenic | 35.0% | |
| AGCAATACTTGAACAAGATC+TGG | - | chr5_3:64616380-64616399 | None:intergenic | 35.0% | |
| ! | GATCTTGTTCAAGTATTGCT+TGG | + | chr5_3:64616380-64616399 | Msa0824910:CDS | 35.0% |
| ATTGCTTGGATCTTTACAGA+TGG | + | chr5_3:64616394-64616413 | Msa0824910:CDS | 35.0% | |
| !!! | TGAAAGAGTTGAAGGTGTTT+TGG | + | chr5_3:64616424-64616443 | Msa0824910:CDS | 35.0% |
| CTTAGAGCAGAATGTTGAAA+TGG | + | chr5_3:64616484-64616503 | Msa0824910:CDS | 35.0% | |
| GGAAAGACAACAACTTGAAA+TGG | + | chr5_3:64616505-64616524 | Msa0824910:CDS | 35.0% | |
| GGAGAAACTCTTAAGGTTAA+AGG | + | chr5_3:64616526-64616545 | Msa0824910:CDS | 35.0% | |
| GGAAGAGTTAAAGAAAAGAG+AGG | + | chr5_3:64616553-64616572 | Msa0824910:CDS | 35.0% | |
| TATAATGCTCTCTTGAAGGA+AGG | + | chr5_3:64616611-64616630 | Msa0824910:CDS | 35.0% | |
| ! | TAAGTTGACACAAGAAAGTG+AGG | + | chr5_3:64616658-64616677 | Msa0824910:CDS | 35.0% |
| ! | TTTCTAAGAAGGAGAAACGT+TGG | + | chr5_3:64616692-64616711 | Msa0824910:CDS | 35.0% |
| ! | TTCTAAGAAGGAGAAACGTT+GGG | + | chr5_3:64616693-64616712 | Msa0824910:CDS | 35.0% |
| ! | TTGACAGGTTGAACGAAAAA+AGG | + | chr5_3:64616729-64616748 | Msa0824910:CDS | 35.0% |
| !! | GAAGTGTTGAGACAAAAGAA+TGG | + | chr5_3:64616773-64616792 | Msa0824910:CDS | 35.0% |
| ! | TAAGTTGAAAGAAGAAAGGG+TGG | + | chr5_3:64616817-64616836 | Msa0824910:CDS | 35.0% |
| ! | GTGTGAGGTTAATAAGTTGA+AGG | + | chr5_3:64616805-64616824 | Msa0824910:CDS | 35.0% |
| AGTTGAAGTGTGAGGTTAAT+AGG | + | chr5_3:64617050-64617069 | Msa0824910:CDS | 35.0% | |
| ! | TGAGATGGAGAATAAGGTTT+TGG | + | chr5_3:64617132-64617151 | Msa0824910:CDS | 35.0% |
| ! | TTTGGAGTTGACAAAGTTGA+AGG | + | chr5_3:64617150-64617169 | Msa0824910:CDS | 35.0% |
| AAAGTTGAAGGAAAAATGGG+AGG | + | chr5_3:64617162-64617181 | Msa0824910:CDS | 35.0% | |
| TGGCAACTATAAGAGAATTG+AGG | + | chr5_3:64617254-64617273 | Msa0824910:CDS | 35.0% | |
| TTGATGAGCTTAAATGTCTC+TGG | + | chr5_3:64617397-64617416 | Msa0824910:CDS | 35.0% | |
| TAAAGATGCATCATCAGGTA+TGG | + | chr5_3:64617504-64617523 | Msa0824910:intron | 35.0% | |
| GGGGTTGTATCATATTATGT+AGG | + | chr5_3:64617859-64617878 | Msa0824910:intron | 35.0% | |
| ! | GTGTAAGTTGTGTATTTTCC+AGG | + | chr5_3:64618179-64618198 | Msa0824910:intron | 35.0% |
| !! | TTGACTTCCTTTTATTTCCC+TGG | - | chr5_3:64618200-64618219 | None:intergenic | 35.0% |
| TTGAAAACCAAGATGATTGC+TGG | + | chr5_3:64618321-64618340 | Msa0824910:CDS | 35.0% | |
| CACTGTCTTCAATTACCAAT+GGG | - | chr5_3:64618368-64618387 | None:intergenic | 35.0% | |
| TCACTGTCTTCAATTACCAA+TGG | - | chr5_3:64618369-64618388 | None:intergenic | 35.0% | |
| GTAATTGAAGACAGTGATGA+GGG | + | chr5_3:64618372-64618391 | Msa0824910:CDS | 35.0% | |
| GATGATATTGATGAAGGTGA+TGG | + | chr5_3:64618396-64618415 | Msa0824910:CDS | 35.0% | |
| AGACTTCATATGACATTAGC+AGG | + | chr5_3:64618484-64618503 | Msa0824910:three_prime_UTR | 35.0% | |
| GTGTTATGAACCATCTATTG+TGG | + | chr5_3:64618592-64618611 | Msa0824910:three_prime_UTR | 35.0% | |
| TAGGTTCAAGGTTCATGGTA+AGG | - | chr5_3:64616247-64616266 | None:intergenic | 40.0% | |
| !!! | CAGGTTCGATTTTAGGTTCA+AGG | - | chr5_3:64616259-64616278 | None:intergenic | 40.0% |
| CTTGAACCTAAAATCGAACC+TGG | + | chr5_3:64616257-64616276 | Msa0824910:CDS | 40.0% | |
| TCTATCAAGAATCACGTGGT+TGG | - | chr5_3:64616294-64616313 | None:intergenic | 40.0% | |
| AGAGACGAAGATGATGAAGT+TGG | + | chr5_3:64616311-64616330 | Msa0824910:CDS | 40.0% | |
| ! | TGAAGTTGGAGCATTTCCTA+TGG | + | chr5_3:64616325-64616344 | Msa0824910:CDS | 40.0% |
| !!! | TTGAAGGTGTTTTGGTGAGA+AGG | + | chr5_3:64616432-64616451 | Msa0824910:CDS | 40.0% |
| !!! | TGAAGGTGTTTTGGTGAGAA+GGG | + | chr5_3:64616433-64616452 | Msa0824910:CDS | 40.0% |
| !!! | TGTTTTGGTGAGAAGGGATT+TGG | + | chr5_3:64616439-64616458 | Msa0824910:CDS | 40.0% |
| !! | GTTTTGGTGAGAAGGGATTT+GGG | + | chr5_3:64616440-64616459 | Msa0824910:CDS | 40.0% |
| !! | TCTGCTCTAAGAGTTGAATC+TGG | - | chr5_3:64616475-64616494 | None:intergenic | 40.0% |
| ACTCTTAAGGTTAAAGGCTG+AGG | + | chr5_3:64616532-64616551 | Msa0824910:CDS | 40.0% | |
| ! | CAGGTTGAACGAAAAAAGGA+AGG | + | chr5_3:64616733-64616752 | Msa0824910:CDS | 40.0% |
| GTTGAACGAAAAAAGGAAGG+AGG | + | chr5_3:64616736-64616755 | Msa0824910:CDS | 40.0% | |
| AACGAAAAAAGGAAGGAGGA+AGG | + | chr5_3:64616740-64616759 | Msa0824910:CDS | 40.0% | |
| ! | GTCTCAACACTTCAAGTTCA+TGG | - | chr5_3:64616766-64616785 | None:intergenic | 40.0% |
| GAGACAAAAGAATGGTGAGT+TGG | + | chr5_3:64616781-64616800 | Msa0824910:CDS | 40.0% | |
| AGTTGGAGTGTGAGGTTAAT+AGG | + | chr5_3:64616798-64616817 | Msa0824910:CDS | 40.0% | |
| ! | GTGTGAGGTTAATAGGTTGA+AGG | + | chr5_3:64616889-64616908 | Msa0824910:CDS | 40.0% |
| ! | TAGGTTGAAGGAAGATATGG+TGG | + | chr5_3:64616901-64616920 | Msa0824910:CDS | 40.0% |
| ! | TTGAAGGAAGATATGGTGGA+GGG | + | chr5_3:64616905-64616924 | Msa0824910:CDS | 40.0% |
| ! | TAAGTTGAAGGAAGATAGGG+TGG | + | chr5_3:64616985-64617004 | Msa0824910:CDS | 40.0% |
| ! | GAATGATGAGTTGAAGTGTG+AGG | + | chr5_3:64617042-64617061 | Msa0824910:CDS | 40.0% |
| ! | GTGTGAGGTTAATAGGTTGA+CGG | + | chr5_3:64616889-64616908 | Msa0824910:CDS | 40.0% |
| GAGAAAAATGACTGGTGAGA+TGG | + | chr5_3:64617117-64617136 | Msa0824910:CDS | 40.0% | |
| GGAGGAAGATTGTATTGTGT+GGG | + | chr5_3:64617180-64617199 | Msa0824910:CDS | 40.0% | |
| TTGACATATTACTCGCGTCT+TGG | + | chr5_3:64617314-64617333 | Msa0824910:CDS | 40.0% | |
| GCATGAAAAAGTTTCAAGGC+TGG | + | chr5_3:64617357-64617376 | Msa0824910:CDS | 40.0% | |
| TGAAAAAGTTTCAAGGCTGG+AGG | + | chr5_3:64617360-64617379 | Msa0824910:CDS | 40.0% | |
| ATGAGCTTAAATGTCTCTGG+TGG | + | chr5_3:64617400-64617419 | Msa0824910:CDS | 40.0% | |
| !! | GGATCCTCCAGTTGATTTTA+TGG | + | chr5_3:64617438-64617457 | Msa0824910:CDS | 40.0% |
| TCAGCAGCCATAAAATCAAC+TGG | - | chr5_3:64617448-64617467 | None:intergenic | 40.0% | |
| GTTTGGTTAGATTGCTAGGT+AGG | + | chr5_3:64617558-64617577 | Msa0824910:intron | 40.0% | |
| AAACAGGAAAATCACGTTCC+AGG | - | chr5_3:64617592-64617611 | None:intergenic | 40.0% | |
| ACTTGTGAGGCTACTAGTAA+TGG | + | chr5_3:64617653-64617672 | Msa0824910:intron | 40.0% | |
| TTTGTAGGATCAGGCACATA+AGG | - | chr5_3:64618100-64618119 | None:intergenic | 40.0% | |
| ATGTCAAGAAAGCCAAAGTC+AGG | + | chr5_3:64618238-64618257 | Msa0824910:CDS | 40.0% | |
| AACATGACTAGACCTGACTT+TGG | - | chr5_3:64618253-64618272 | None:intergenic | 40.0% | |
| AGTCAGGTCTAGTCATGTTA+AGG | + | chr5_3:64618254-64618273 | Msa0824910:CDS | 40.0% | |
| ATGTCGCAAAAACCAAAGTC+AGG | + | chr5_3:64618277-64618296 | Msa0824910:CDS | 40.0% | |
| TCTATCACTAGACCTGACTT+TGG | - | chr5_3:64618292-64618311 | None:intergenic | 40.0% | |
| GGTAATTGAAGACAGTGATG+AGG | + | chr5_3:64618371-64618390 | Msa0824910:CDS | 40.0% | |
| GAGGGTGATGATATTGATGA+AGG | + | chr5_3:64618390-64618409 | Msa0824910:CDS | 40.0% | |
| CTTCATATGACATTAGCAGG+AGG | + | chr5_3:64618487-64618506 | Msa0824910:three_prime_UTR | 40.0% | |
| ATCAAGAATCACGTGGTTGG+AGG | - | chr5_3:64616291-64616310 | None:intergenic | 45.0% | |
| CGTCTCTATCAAGAATCACG+TGG | - | chr5_3:64616298-64616317 | None:intergenic | 45.0% | |
| TCTCTTGAAGGAAGGCAAGA+CGG | + | chr5_3:64616619-64616638 | Msa0824910:CDS | 45.0% | |
| !! | AAACGTTGGGTTGAAGTGTG+AGG | + | chr5_3:64616706-64616725 | Msa0824910:CDS | 45.0% |
| GTTGAAAGAAGAAAGGGTGG+AGG | + | chr5_3:64616820-64616839 | Msa0824910:CDS | 45.0% | |
| AAAGAAGAAAGGGTGGAGGA+TGG | + | chr5_3:64616824-64616843 | Msa0824910:CDS | 45.0% | |
| AAGAAGAAAGGGTGGAGGAT+GGG | + | chr5_3:64616825-64616844 | Msa0824910:CDS | 45.0% | |
| ! | GAATGATGAGTTGGAGTGTG+AGG | + | chr5_3:64616874-64616893 | Msa0824910:CDS | 45.0% |
| GTTGAAGGAAGATATGGTGG+AGG | + | chr5_3:64616904-64616923 | Msa0824910:CDS | 45.0% | |
| ! | TAGGTTGACGGAAAAAACGG+CGG | + | chr5_3:64617069-64617088 | Msa0824910:CDS | 45.0% |
| GGTGTGCAGAGAAAAATGAC+TGG | + | chr5_3:64617109-64617128 | Msa0824910:CDS | 45.0% | |
| GACTGGTGAGATGGAGAATA+AGG | + | chr5_3:64617126-64617145 | Msa0824910:CDS | 45.0% | |
| GGGAGGAAGATTGTATTGTG+TGG | + | chr5_3:64617179-64617198 | Msa0824910:CDS | 45.0% | |
| GAAGATTGTATTGTGTGGGC+TGG | + | chr5_3:64617184-64617203 | Msa0824910:CDS | 45.0% | |
| AGCTTAAATGTCTCTGGTGG+TGG | + | chr5_3:64617403-64617422 | Msa0824910:CDS | 45.0% | |
| !! | TCTGGTGGTGGAAACAATGA+GGG | + | chr5_3:64617415-64617434 | Msa0824910:CDS | 45.0% |
| GCAGCCATAAAATCAACTGG+AGG | - | chr5_3:64617445-64617464 | None:intergenic | 45.0% | |
| AGATTGCTAGGTAGGTAGCT+TGG | + | chr5_3:64617566-64617585 | Msa0824910:intron | 45.0% | |
| AGTTGGTCATGTCGAAGTAC+CGG | + | chr5_3:64618012-64618031 | Msa0824910:CDS | 45.0% | |
| !! | CTTGCAGAAGGTGCTACAAT+TGG | - | chr5_3:64618040-64618059 | None:intergenic | 45.0% |
| !! | GGCACATAAGGTATTGCAAC+TGG | - | chr5_3:64618088-64618107 | None:intergenic | 45.0% |
| CAATTCACTCACACACACAC+AGG | - | chr5_3:64618143-64618162 | None:intergenic | 45.0% | |
| ! | CCAATCTTTTGGTCTCTCTC+TGG | - | chr5_3:64618435-64618454 | None:intergenic | 45.0% |
| CCAGAGAGAGACCAAAAGAT+TGG | + | chr5_3:64618432-64618451 | Msa0824910:three_prime_UTR | 45.0% | |
| ! | GCATGCATGGACCAATCTTT+TGG | - | chr5_3:64618446-64618465 | None:intergenic | 45.0% |
| ! | AAAGATTGGTCCATGCATGC+AGG | + | chr5_3:64618446-64618465 | Msa0824910:three_prime_UTR | 45.0% |
| GTGTTATGAACCACTTCGAG+CGG | + | chr5_3:64618671-64618690 | Msa0824910:three_prime_UTR | 45.0% | |
| ! | GGTGACCCAGGTTCGATTTT+AGG | - | chr5_3:64616266-64616285 | None:intergenic | 50.0% |
| AGAATCACGTGGTTGGAGGA+AGG | - | chr5_3:64616287-64616306 | None:intergenic | 50.0% | |
| GGTTGAAGTGTGAGGTTGAC+AGG | + | chr5_3:64616714-64616733 | Msa0824910:CDS | 50.0% | |
| ! | GAATGGTGAGTTGGAGTGTG+AGG | + | chr5_3:64616790-64616809 | Msa0824910:CDS | 50.0% |
| ! | AAGGAAGATATGGTGGAGGG+TGG | + | chr5_3:64616908-64616927 | Msa0824910:CDS | 50.0% |
| ! | AGGAAGATATGGTGGAGGGT+GGG | + | chr5_3:64616909-64616928 | Msa0824910:CDS | 50.0% |
| GAGTGATGAGCTAGAGTGTG+AGG | + | chr5_3:64616958-64616977 | Msa0824910:CDS | 50.0% | |
| GTTGAAGGAAGATAGGGTGG+AGG | + | chr5_3:64616988-64617007 | Msa0824910:CDS | 50.0% | |
| AAGGAAGATAGGGTGGAGGA+TGG | + | chr5_3:64616992-64617011 | Msa0824910:CDS | 50.0% | |
| AGGAAGATAGGGTGGAGGAT+GGG | + | chr5_3:64616993-64617012 | Msa0824910:CDS | 50.0% | |
| ACGGAAAAAACGGCGGATGA+TGG | + | chr5_3:64617076-64617095 | Msa0824910:CDS | 50.0% | |
| !! | CTCTGGTGGTGGAAACAATG+AGG | + | chr5_3:64617414-64617433 | Msa0824910:CDS | 50.0% |
| !! | CTGGTGGTGGAAACAATGAG+GGG | + | chr5_3:64617416-64617435 | Msa0824910:CDS | 50.0% |
| !! | TGGTGGTGGAAACAATGAGG+GGG | + | chr5_3:64617417-64617436 | Msa0824910:CDS | 50.0% |
| CTGCATTGTTCTGCACCAGT+TGG | + | chr5_3:64617995-64618014 | Msa0824910:CDS | 50.0% | |
| GGTACTTCGACATGACCAAC+TGG | - | chr5_3:64618013-64618032 | None:intergenic | 50.0% | |
| !! | GAAGGTGCTACAATTGGTGC+CGG | - | chr5_3:64618034-64618053 | None:intergenic | 50.0% |
| TGTAGCACCTTCTGCAAGTC+AGG | + | chr5_3:64618042-64618061 | Msa0824910:CDS | 50.0% | |
| ! | GGATCAACCTGACTTGCAGA+AGG | - | chr5_3:64618052-64618071 | None:intergenic | 50.0% |
| GCAACTGGTGCATTTGCAAC+AGG | - | chr5_3:64618073-64618092 | None:intergenic | 50.0% | |
| ACCAAGATGATTGCTGGTCC+AGG | + | chr5_3:64618327-64618346 | Msa0824910:CDS | 50.0% | |
| CAAAGATGCAAGCAGCCCAT+TGG | + | chr5_3:64618350-64618369 | Msa0824910:CDS | 50.0% | |
| GTCCATGCATGCAGGCAATT+AGG | + | chr5_3:64618454-64618473 | Msa0824910:three_prime_UTR | 50.0% | |
| GTCCTAATTGCCTGCATGCA+TGG | - | chr5_3:64618459-64618478 | None:intergenic | 50.0% | |
| GCCTGGACCAGCAATCATCT+TGG | - | chr5_3:64618331-64618350 | None:intergenic | 55.0% | |
| GATACAGAGACCGCTCGAAG+TGG | - | chr5_3:64618684-64618703 | None:intergenic | 55.0% | |
| TGGTTGGAGGAAGGTGACCC+AGG | - | chr5_3:64616278-64616297 | None:intergenic | 60.0% | |
| ! | GCGGATGATGGCTGTGAGCT+TGG | + | chr5_3:64617088-64617107 | Msa0824910:CDS | 60.0% |
| GCTAGGTAGGTAGCTTGGCC+TGG | + | chr5_3:64617571-64617590 | Msa0824910:intron | 60.0% | |
| GGGCTGCTTGCATCTTTGCC+TGG | - | chr5_3:64618348-64618367 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 64616180 | 64618750 | 64616180 | ID=Msa0824910;Name=Msa0824910 |
| chr5_3 | mRNA | 64616180 | 64618750 | 64616180 | ID=Msa0824910-mRNA-1;Parent=Msa0824910;Name=Msa0824910-mRNA-1;_AED=0.01;_eAED=0.01;_QI=71|0.5|0.66|1|1|1|3|319|556 |
| chr5_3 | exon | 64616180 | 64617520 | 64616180 | ID=Msa0824910-mRNA-1:exon:20117;Parent=Msa0824910-mRNA-1 |
| chr5_3 | exon | 64617951 | 64618120 | 64617951 | ID=Msa0824910-mRNA-1:exon:20118;Parent=Msa0824910-mRNA-1 |
| chr5_3 | exon | 64618201 | 64618750 | 64618201 | ID=Msa0824910-mRNA-1:exon:20119;Parent=Msa0824910-mRNA-1 |
| chr5_3 | five_prime_UTR | 64616180 | 64616250 | 64616180 | ID=Msa0824910-mRNA-1:five_prime_utr;Parent=Msa0824910-mRNA-1 |
| chr5_3 | CDS | 64616251 | 64617520 | 64616251 | ID=Msa0824910-mRNA-1:cds;Parent=Msa0824910-mRNA-1 |
| chr5_3 | CDS | 64617951 | 64618120 | 64617951 | ID=Msa0824910-mRNA-1:cds;Parent=Msa0824910-mRNA-1 |
| chr5_3 | CDS | 64618201 | 64618431 | 64618201 | ID=Msa0824910-mRNA-1:cds;Parent=Msa0824910-mRNA-1 |
| chr5_3 | three_prime_UTR | 64618432 | 64618750 | 64618432 | ID=Msa0824910-mRNA-1:three_prime_utr;Parent=Msa0824910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
