Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740040 | XP_039690834.1 | 91.388 | 569 | 31 | 2 | 1 | 556 | 1 | 564 | 0.0 | 997 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740040 | G7K4J5 | 91.388 | 569 | 31 | 2 | 1 | 556 | 1 | 564 | 0.0 | 997 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024680 | Msa0740040 | 0.807298 | 5.411297e-50 | -8.615850e-47 |
| Msa0032840 | Msa0740040 | -0.809049 | 2.293147e-50 | -8.615850e-47 |
| Msa0044020 | Msa0740040 | 0.802390 | 5.739420e-49 | -8.615850e-47 |
| Msa0053110 | Msa0740040 | 0.802436 | 5.615818e-49 | -8.615850e-47 |
| Msa0073670 | Msa0740040 | 0.821960 | 3.058035e-53 | -8.615850e-47 |
| Msa0096670 | Msa0740040 | 0.804523 | 2.073351e-49 | -8.615850e-47 |
| Msa0619980 | Msa0740040 | 0.802958 | 4.382129e-49 | -8.615850e-47 |
| Msa0638690 | Msa0740040 | 0.803875 | 2.828661e-49 | -8.615850e-47 |
| Msa0639120 | Msa0740040 | 0.812856 | 3.434459e-51 | -8.615850e-47 |
| Msa0642650 | Msa0740040 | 0.800462 | 1.424864e-48 | -8.615850e-47 |
| Msa0678860 | Msa0740040 | 0.819645 | 1.041985e-52 | -8.615850e-47 |
| Msa0687630 | Msa0740040 | 0.804092 | 2.549371e-49 | -8.615850e-47 |
| Msa0740040 | Msa0755340 | 0.803563 | 3.283344e-49 | -8.615850e-47 |
| Msa0740040 | Msa0787750 | 0.823178 | 1.592986e-53 | -8.615850e-47 |
| Msa0740040 | Msa0787810 | 0.897694 | 1.096434e-76 | -8.615850e-47 |
| Msa0740040 | Msa0824640 | 0.810029 | 1.412380e-50 | -8.615850e-47 |
| Msa0740040 | Msa0824910 | 0.942470 | 6.792616e-102 | -8.615850e-47 |
| Msa0740040 | Msa0862100 | 0.805970 | 1.032188e-49 | -8.615850e-47 |
| Msa0740040 | Msa0863970 | 0.982521 | 2.624298e-155 | -8.615850e-47 |
| Msa0740040 | Msa0864010 | 0.819023 | 1.443534e-52 | -8.615850e-47 |
| Msa0740040 | Msa0872310 | 0.811160 | 8.043164e-51 | -8.615850e-47 |
| Msa0740040 | Msa0905550 | 0.829731 | 4.367755e-55 | -8.615850e-47 |
| Msa0740040 | Msa0907700 | 0.800362 | 1.493183e-48 | -8.615850e-47 |
| Msa0740040 | Msa0937550 | 0.840384 | 8.984388e-58 | -8.615850e-47 |
| Msa0740040 | Msa0937670 | 0.805466 | 1.317150e-49 | -8.615850e-47 |
| Msa0740040 | Msa1007350 | 0.810615 | 1.055270e-50 | -8.615850e-47 |
| Msa0740040 | Msa1018790 | 0.821852 | 3.239880e-53 | -8.615850e-47 |
| Msa0740040 | Msa1044340 | 0.801235 | 9.910052e-49 | -8.615850e-47 |
| Msa0740040 | Msa1082700 | 0.809741 | 1.628478e-50 | -8.615850e-47 |
| Msa0740040 | Msa1107440 | 0.807011 | 6.224648e-50 | -8.615850e-47 |
| Msa0740040 | Msa1150970 | 0.834301 | 3.243956e-56 | -8.615850e-47 |
| Msa0740040 | Msa1211090 | 0.801109 | 1.051657e-48 | -8.615850e-47 |
| Msa0740040 | Msa1221560 | 0.810742 | 9.908701e-51 | -8.615850e-47 |
| Msa0740040 | Msa1299360 | 0.812237 | 4.691512e-51 | -8.615850e-47 |
| Msa0740040 | Msa1307950 | 0.821770 | 3.383455e-53 | -8.615850e-47 |
| Msa0740040 | Msa1316830 | 0.801249 | 9.844465e-49 | -8.615850e-47 |
| Msa0740040 | Msa1344850 | 0.804129 | 2.505618e-49 | -8.615850e-47 |
| Msa0740040 | Msa1365150 | 0.823478 | 1.355855e-53 | -8.615850e-47 |
| Msa0740040 | Msa1365200 | 0.825081 | 5.692020e-54 | -8.615850e-47 |
| Msa0740040 | Msa1367880 | 0.807992 | 3.854536e-50 | -8.615850e-47 |
| Msa0740040 | Msa1397050 | 0.803593 | 3.237835e-49 | -8.615850e-47 |
| Msa0740040 | Msa1404190 | 0.824872 | 6.378071e-54 | -8.615850e-47 |
| Msa0740040 | Msa1465080 | 0.811665 | 6.247739e-51 | -8.615850e-47 |
| Msa0740040 | Msa1466990 | 0.816001 | 6.923738e-52 | -8.615850e-47 |
| Msa0134130 | Msa0740040 | 0.816511 | 5.325285e-52 | -8.615850e-47 |
| Msa0169570 | Msa0740040 | 0.832034 | 1.190228e-55 | -8.615850e-47 |
| Msa0183620 | Msa0740040 | 0.803503 | 3.379156e-49 | -8.615850e-47 |
| Msa0230550 | Msa0740040 | -0.808004 | 3.831945e-50 | -8.615850e-47 |
| Msa0413450 | Msa0740040 | 0.813635 | 2.315993e-51 | -8.615850e-47 |
| Msa0469910 | Msa0740040 | -0.816176 | 6.327359e-52 | -8.615850e-47 |
| Msa0259560 | Msa0740040 | 0.817184 | 3.762322e-52 | -8.615850e-47 |
| Msa0260280 | Msa0740040 | 0.803788 | 2.949732e-49 | -8.615850e-47 |
| Msa0294390 | Msa0740040 | 0.812890 | 3.375986e-51 | -8.615850e-47 |
| Msa0304260 | Msa0740040 | 0.811376 | 7.221755e-51 | -8.615850e-47 |
| Msa0304300 | Msa0740040 | 0.810507 | 1.113659e-50 | -8.615850e-47 |
| Msa0510440 | Msa0740040 | 0.811752 | 5.982971e-51 | -8.615850e-47 |
| Msa0527590 | Msa0740040 | 0.808998 | 2.350546e-50 | -8.615850e-47 |
| Msa0552810 | Msa0740040 | 0.802183 | 6.332019e-49 | -8.615850e-47 |
| Msa0560470 | Msa0740040 | 0.805545 | 1.267441e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740040 | MtrunA17_Chr5g0445961 | 91.388 | 569 | 31 | 2 | 1 | 556 | 1 | 564 | 0.0 | 997 |
| Msa0740040 | MtrunA17_Chr5g0445861 | 48.077 | 416 | 137 | 9 | 1 | 392 | 1 | 361 | 1.42e-90 | 285 |
| Msa0740040 | MtrunA17_Chr5g0445771 | 36.453 | 406 | 152 | 8 | 3 | 404 | 1 | 304 | 1.53e-50 | 181 |
| Msa0740040 | MtrunA17_Chr5g0445831 | 37.778 | 405 | 178 | 11 | 1 | 382 | 1 | 354 | 3.51e-50 | 178 |
| Msa0740040 | MtrunA17_Chr5g0445881 | 46.286 | 175 | 74 | 2 | 252 | 406 | 127 | 301 | 1.88e-33 | 133 |
| Msa0740040 | MtrunA17_Chr5g0445881 | 35.207 | 338 | 162 | 10 | 1 | 329 | 1 | 290 | 4.07e-29 | 120 |
| Msa0740040 | MtrunA17_Chr5g0446181 | 41.150 | 226 | 106 | 6 | 1 | 216 | 1 | 209 | 5.51e-28 | 115 |
| Msa0740040 | MtrunA17_Chr5g0445811 | 37.500 | 248 | 102 | 6 | 154 | 382 | 30 | 243 | 8.65e-28 | 112 |
| Msa0740040 | MtrunA17_Chr5g0446171 | 35.196 | 179 | 82 | 4 | 1 | 176 | 1 | 148 | 2.31e-17 | 81.6 |
| Msa0740040 | MtrunA17_Chr1g0185261 | 40.441 | 136 | 55 | 3 | 255 | 389 | 65 | 175 | 2.10e-16 | 78.6 |
| Msa0740040 | MtrunA17_Chr5g0446231 | 38.462 | 130 | 63 | 3 | 40 | 166 | 1 | 116 | 2.90e-13 | 72.4 |
| Msa0740040 | MtrunA17_Chr5g0413371 | 35.152 | 165 | 85 | 2 | 35 | 199 | 1 | 143 | 3.94e-13 | 72.0 |
| Msa0740040 | MtrunA17_Chr5g0446191 | 38.168 | 131 | 64 | 3 | 39 | 166 | 15 | 131 | 1.08e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 126 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGTTAGTAACTTTATTT+TGG | 0.155616 | 5_1:+58876092 | Msa0740040:three_prime_UTR |
| AGTAATCAGTAACTTTATTT+TGG | 0.175697 | 5_1:+58876011 | Msa0740040:three_prime_UTR |
| GTCTCAACACTTCAAGTTCA+TGG | 0.265620 | 5_1:-58874218 | None:intergenic |
| GCTTAAATACTTACATTTGT+AGG | 0.271720 | 5_1:-58875567 | None:intergenic |
| GGAGAAACTCTTAAGGTTAA+AGG | 0.271874 | 5_1:+58873981 | Msa0740040:CDS |
| TGAAACAGTAAACAAGAATT+TGG | 0.280388 | 5_1:+58874689 | Msa0740040:CDS |
| AATTGTTAGTAACTTTGTTT+TGG | 0.287134 | 5_1:+58876170 | Msa0740040:three_prime_UTR |
| GCATGCATGGACCAATCTTT+TGG | 0.292810 | 5_1:-58875900 | None:intergenic |
| ATTTAAGCTCATCAATAGTT+TGG | 0.295375 | 5_1:-58874844 | None:intergenic |
| GACTGGTGAGATGGAGAATA+AGG | 0.296831 | 5_1:+58874581 | Msa0740040:CDS |
| AGTTGGAGTGTGAGGTTAAT+AGG | 0.300952 | 5_1:+58874337 | Msa0740040:CDS |
| AGTTGAAGTGTGAGGTTAAT+AGG | 0.300952 | 5_1:+58874505 | Msa0740040:CDS |
| TGAGATGGAGAATAAGGTTT+TGG | 0.325391 | 5_1:+58874587 | Msa0740040:CDS |
| TTAATAAGTTGAAGGAAGAT+AGG | 0.328036 | 5_1:+58874436 | Msa0740040:CDS |
| GTCAAAATCATTACATGTTA+AGG | 0.357681 | 5_1:+58875672 | Msa0740040:CDS |
| AGCAATACTTGAACAAGATC+TGG | 0.362926 | 5_1:-58873832 | None:intergenic |
| GGGCTGCTTGCATCTTTGCC+TGG | 0.376137 | 5_1:-58875802 | None:intergenic |
| GTCCATGCATGCAGGCAATT+AGG | 0.379329 | 5_1:+58875911 | Msa0740040:three_prime_UTR |
| GGAAAGACAACAACTTGAAA+TGG | 0.380275 | 5_1:+58873960 | Msa0740040:CDS |
| TGAAAGAGTTGAAGGTGTTT+TGG | 0.381818 | 5_1:+58873879 | Msa0740040:CDS |
| GGTTGAAGTGTGAGGTTGAC+AGG | 0.395371 | 5_1:+58874169 | Msa0740040:CDS |
| CTTAGAGCAGAATGTTGAAA+TGG | 0.410048 | 5_1:+58873939 | Msa0740040:CDS |
| ATACTTACATTTGTAGGATC+AGG | 0.410411 | 5_1:-58875561 | None:intergenic |
| TGTAGCACCTTCTGCAAGTC+AGG | 0.411433 | 5_1:+58875497 | Msa0740040:CDS |
| ATGGAAACTCTTGACTTAGA+AGG | 0.415536 | 5_1:+58873799 | Msa0740040:CDS |
| GCAACTGGTGCATTTGCAAC+AGG | 0.416299 | 5_1:-58875525 | None:intergenic |
| TTGAAATGGAGAAACTCTTA+AGG | 0.417844 | 5_1:+58873974 | Msa0740040:CDS |
| TAATAGGTTGAAGGAAGATA+TGG | 0.418849 | 5_1:+58874353 | Msa0740040:CDS |
| GATCTTGTTCAAGTATTGCT+TGG | 0.420517 | 5_1:+58873835 | Msa0740040:CDS |
| TTGAAAACCAAGATGATTGC+TGG | 0.423791 | 5_1:+58875778 | Msa0740040:CDS |
| GCCTGGACCAGCAATCATCT+TGG | 0.434652 | 5_1:-58875785 | None:intergenic |
| AAGGAAGATAGGGTGGAGGA+TGG | 0.446522 | 5_1:+58874447 | Msa0740040:CDS |
| AAGTTATAATGCTCTCTTGA+AGG | 0.449736 | 5_1:+58874062 | Msa0740040:CDS |
| GAGTGATGAGCTAGAGTGTG+AGG | 0.452371 | 5_1:+58874413 | Msa0740040:CDS |
| TCAGCAGCCATAAAATCAAC+TGG | 0.457108 | 5_1:-58874900 | None:intergenic |
| TTTGGAGTTGACAAAGTTGA+AGG | 0.457739 | 5_1:+58874605 | Msa0740040:CDS |
| TTTGTAGGATCAGGCACATA+AGG | 0.460936 | 5_1:-58875552 | None:intergenic |
| TTGACATATTACTCGCGTCT+TGG | 0.462570 | 5_1:+58874769 | Msa0740040:CDS |
| AAAGTTAAAGATGCATCATC+AGG | 0.464717 | 5_1:+58874954 | Msa0740040:CDS |
| AGTCAGGTCTAGTCATGTTA+AGG | 0.465936 | 5_1:+58875711 | Msa0740040:CDS |
| GAAACTTATGAAAGAGTTGA+AGG | 0.466139 | 5_1:+58873871 | Msa0740040:CDS |
| GTGTGAGGTTAATAGGTTGA+AGG | 0.471254 | 5_1:+58874344 | Msa0740040:CDS |
| GGCACATAAGGTATTGCAAC+TGG | 0.471489 | 5_1:-58875540 | None:intergenic |
| CACTGTCTTCAATTACCAAT+GGG | 0.473098 | 5_1:-58875822 | None:intergenic |
| GTGTGAGGTTAATAAGTTGA+AGG | 0.473823 | 5_1:+58874428 | Msa0740040:CDS |
| CTTGAACCTAAAATCGAACC+TGG | 0.474651 | 5_1:+58873712 | Msa0740040:CDS |
| TTAATAAGTTGAAAGAAGAA+AGG | 0.475430 | 5_1:+58874268 | Msa0740040:CDS |
| ACCAAGATGATTGCTGGTCC+AGG | 0.475629 | 5_1:+58875784 | Msa0740040:CDS |
| TCTATCACTAGACCTGACTT+TGG | 0.479541 | 5_1:-58875746 | None:intergenic |
| TTCTAAGAAGGAGAAACGTT+GGG | 0.480244 | 5_1:+58874148 | Msa0740040:CDS |
| AGCTTAAATGTCTCTGGTGG+TGG | 0.480275 | 5_1:+58874858 | Msa0740040:CDS |
| AAAGAAGAAAGGGTGGAGGA+TGG | 0.483082 | 5_1:+58874279 | Msa0740040:CDS |
| ATGTCAAGAAAGCCAAAGTC+AGG | 0.490710 | 5_1:+58875695 | Msa0740040:CDS |
| CCAGAGAGAGACCAAAAGAT+TGG | 0.491518 | 5_1:+58875889 | Msa0740040:three_prime_UTR |
| GTCCTAATTGCCTGCATGCA+TGG | 0.492307 | 5_1:-58875913 | None:intergenic |
| TCTGCTCTAAGAGTTGAATC+TGG | 0.493051 | 5_1:-58873927 | None:intergenic |
| AGACTTCATATGACATTAGC+AGG | 0.496406 | 5_1:+58875941 | Msa0740040:three_prime_UTR |
| CTTGCAGAAGGTGCTACAAT+TGG | 0.498019 | 5_1:-58875492 | None:intergenic |
| ATCAAGAATCACGTGGTTGG+AGG | 0.498362 | 5_1:-58873743 | None:intergenic |
| TTGATGAGCTTAAATGTCTC+TGG | 0.501390 | 5_1:+58874852 | Msa0740040:CDS |
| AACATGACTAGACCTGACTT+TGG | 0.503870 | 5_1:-58875707 | None:intergenic |
| TAGGTTCAAGGTTCATGGTA+AGG | 0.506024 | 5_1:-58873699 | None:intergenic |
| AAGGAAGATATGGTGGAGGG+TGG | 0.509218 | 5_1:+58874363 | Msa0740040:CDS |
| TAATAAGTTGAAGGAAGATA+GGG | 0.510480 | 5_1:+58874437 | Msa0740040:CDS |
| GGTACTTCGACATGACCAAC+TGG | 0.512667 | 5_1:-58875465 | None:intergenic |
| GCGGATGATGGCTGTGAGCT+TGG | 0.513466 | 5_1:+58874543 | Msa0740040:CDS |
| ACTCTTAAGGTTAAAGGCTG+AGG | 0.519219 | 5_1:+58873987 | Msa0740040:CDS |
| TAATAAGTTGAAAGAAGAAA+GGG | 0.520930 | 5_1:+58874269 | Msa0740040:CDS |
| AGAGACGAAGATGATGAAGT+TGG | 0.521296 | 5_1:+58873766 | Msa0740040:CDS |
| GTTGAAGGAAGATAGGGTGG+AGG | 0.521973 | 5_1:+58874443 | Msa0740040:CDS |
| AAGAAGAAAGGGTGGAGGAT+GGG | 0.524336 | 5_1:+58874280 | Msa0740040:CDS |
| TTTCTAAGAAGGAGAAACGT+TGG | 0.528902 | 5_1:+58874147 | Msa0740040:CDS |
| GGAAGAGTTAAAGAAAAGAG+AGG | 0.532934 | 5_1:+58874008 | Msa0740040:CDS |
| AGGAAGATAGGGTGGAGGAT+GGG | 0.537473 | 5_1:+58874448 | Msa0740040:CDS |
| TAGGTTGAAGGAAGATATGG+TGG | 0.538319 | 5_1:+58874356 | Msa0740040:CDS |
| TGGCAACTATAAGAGAATTG+AGG | 0.540056 | 5_1:+58874709 | Msa0740040:CDS |
| GAAGATTGTATTGTGTGGGC+TGG | 0.542503 | 5_1:+58874639 | Msa0740040:CDS |
| TAAGTTGAAGGAAGATAGGG+TGG | 0.544598 | 5_1:+58874440 | Msa0740040:CDS |
| TGAAGTTGGAGCATTTCCTA+TGG | 0.545820 | 5_1:+58873780 | Msa0740040:CDS |
| AACAATGCCACAATAGATGA+TGG | 0.547079 | 5_1:-58876057 | None:intergenic |
| TGGTTGGAGGAAGGTGACCC+AGG | 0.547723 | 5_1:-58873730 | None:intergenic |
| GTGTGAGGTTAATAGGTTGA+CGG | 0.547979 | 5_1:+58874512 | Msa0740040:CDS |
| AGGAAGATATGGTGGAGGGT+GGG | 0.550407 | 5_1:+58874364 | Msa0740040:CDS |
| ATTGCTTGGATCTTTACAGA+TGG | 0.550510 | 5_1:+58873849 | Msa0740040:CDS |
| TCACTGTCTTCAATTACCAA+TGG | 0.555333 | 5_1:-58875823 | None:intergenic |
| GCAATACTTGAACAAGATCT+GGG | 0.555962 | 5_1:-58873831 | None:intergenic |
| AAAGATTGGTCCATGCATGC+AGG | 0.559005 | 5_1:+58875903 | Msa0740040:three_prime_UTR |
| CAAAGATGCAAGCAGCCCAT+TGG | 0.565479 | 5_1:+58875807 | Msa0740040:CDS |
| TCTATCAAGAATCACGTGGT+TGG | 0.566169 | 5_1:-58873746 | None:intergenic |
| TCTGGTGGTGGAAACAATGA+GGG | 0.566395 | 5_1:+58874870 | Msa0740040:CDS |
| TAAGTTGAAAGAAGAAAGGG+TGG | 0.575684 | 5_1:+58874272 | Msa0740040:CDS |
| CTCTGGTGGTGGAAACAATG+AGG | 0.577778 | 5_1:+58874869 | Msa0740040:CDS |
| AGTTGGTCATGTCGAAGTAC+CGG | 0.578493 | 5_1:+58875467 | Msa0740040:CDS |
| TATAATGCTCTCTTGAAGGA+AGG | 0.584603 | 5_1:+58874066 | Msa0740040:CDS |
| TTATGAACCATCATCTATTG+TGG | 0.584836 | 5_1:+58876050 | Msa0740040:three_prime_UTR |
| GAATGGTGAGTTGGAGTGTG+AGG | 0.586676 | 5_1:+58874245 | Msa0740040:CDS |
| GAGGGTGATGATATTGATGA+AGG | 0.589257 | 5_1:+58875847 | Msa0740040:CDS |
| GTTGAAAGAAGAAAGGGTGG+AGG | 0.590291 | 5_1:+58874275 | Msa0740040:CDS |
| AGAATCACGTGGTTGGAGGA+AGG | 0.592347 | 5_1:-58873739 | None:intergenic |
| GATGATATTGATGAAGGTGA+TGG | 0.594476 | 5_1:+58875853 | Msa0740040:CDS |
| GAAGGTGCTACAATTGGTGC+CGG | 0.596125 | 5_1:-58875486 | None:intergenic |
| TCTAAGTCAAGAGTTTCCAT+AGG | 0.597975 | 5_1:-58873796 | None:intergenic |
| GTTGAAGGAAGATATGGTGG+AGG | 0.598207 | 5_1:+58874359 | Msa0740040:CDS |
| CTGCATTGTTCTGCACCAGT+TGG | 0.601057 | 5_1:+58875450 | Msa0740040:CDS |
| GAGACAAAAGAATGGTGAGT+TGG | 0.607745 | 5_1:+58874236 | Msa0740040:CDS |
| TTGAAGGAAGATATGGTGGA+GGG | 0.608134 | 5_1:+58874360 | Msa0740040:CDS |
| TCTCTTGAAGGAAGGCAAGA+CGG | 0.610347 | 5_1:+58874074 | Msa0740040:CDS |
| GAATGATGAGTTGGAGTGTG+AGG | 0.613027 | 5_1:+58874329 | Msa0740040:CDS |
| GTAATTGAAGACAGTGATGA+GGG | 0.618776 | 5_1:+58875829 | Msa0740040:CDS |
| TAAGTTGACACAAGAAAGTG+AGG | 0.628177 | 5_1:+58874113 | Msa0740040:CDS |
| AAACGTTGGGTTGAAGTGTG+AGG | 0.632328 | 5_1:+58874161 | Msa0740040:CDS |
| GGAGGAAGATTGTATTGTGT+GGG | 0.635950 | 5_1:+58874635 | Msa0740040:CDS |
| GATACAGAGACCGCTCGAAG+TGG | 0.636412 | 5_1:-58876139 | None:intergenic |
| GGATCAACCTGACTTGCAGA+AGG | 0.648405 | 5_1:-58875504 | None:intergenic |
| CTGGTGGTGGAAACAATGAG+GGG | 0.648857 | 5_1:+58874871 | Msa0740040:CDS |
| GAAGTGTTGAGACAAAAGAA+TGG | 0.649570 | 5_1:+58874228 | Msa0740040:CDS |
| GGGAGGAAGATTGTATTGTG+TGG | 0.661249 | 5_1:+58874634 | Msa0740040:CDS |
| CGTCTCTATCAAGAATCACG+TGG | 0.663157 | 5_1:-58873750 | None:intergenic |
| GAATGATGAGTTGAAGTGTG+AGG | 0.673142 | 5_1:+58874497 | Msa0740040:CDS |
| GGTAATTGAAGACAGTGATG+AGG | 0.677445 | 5_1:+58875828 | Msa0740040:CDS |
| TTGAACCTAAAATCGAACCT+GGG | 0.681572 | 5_1:+58873713 | Msa0740040:CDS |
| ATGAGCTTAAATGTCTCTGG+TGG | 0.688563 | 5_1:+58874855 | Msa0740040:CDS |
| GTGTTATGAACCACTTCGAG+CGG | 0.691445 | 5_1:+58876129 | Msa0740040:three_prime_UTR |
| CTTCATATGACATTAGCAGG+AGG | 0.696178 | 5_1:+58875944 | Msa0740040:three_prime_UTR |
| TGGTGGTGGAAACAATGAGG+GGG | 0.698952 | 5_1:+58874872 | Msa0740040:CDS |
| GCAGCCATAAAATCAACTGG+AGG | 0.708098 | 5_1:-58874897 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAGTGTAAAGAAATTATA+GGG | - | chr5_1:58875189-58875208 | None:intergenic | 15.0% |
| !! | ATATAGTGTAAAGAAATTAT+AGG | - | chr5_1:58875190-58875209 | None:intergenic | 15.0% |
| !! | AAATACAAACATTATACATA+AGG | - | chr5_1:58875240-58875259 | None:intergenic | 15.0% |
| !!! | TTTATACATTATTTTAGACT+AGG | + | chr5_1:58875354-58875373 | Msa0740040:intron | 15.0% |
| !!! | TTATACATTATTTTAGACTA+GGG | + | chr5_1:58875355-58875374 | Msa0740040:intron | 15.0% |
| !!! | TATTGTTAGTAACTTTATTT+TGG | + | chr5_1:58876092-58876111 | Msa0740040:three_prime_UTR | 15.0% |
| !!! | AAACTATTGATTTTCTAAGA+AGG | + | chr5_1:58874136-58874155 | Msa0740040:CDS | 20.0% |
| !!! | TTAATAAGTTGAAAGAAGAA+AGG | + | chr5_1:58874268-58874287 | Msa0740040:CDS | 20.0% |
| !!! | TAATAAGTTGAAAGAAGAAA+GGG | + | chr5_1:58874269-58874288 | Msa0740040:CDS | 20.0% |
| !! | TATATATGATTTCATCAATG+AGG | - | chr5_1:58875141-58875160 | None:intergenic | 20.0% |
| !! | ATGAAATCATATATATTCGA+AGG | + | chr5_1:58875146-58875165 | Msa0740040:intron | 20.0% |
| !!! | ATATTTTATTGTATCTCTAG+TGG | + | chr5_1:58875274-58875293 | Msa0740040:intron | 20.0% |
| !!! | TATTTTATTGTATCTCTAGT+GGG | + | chr5_1:58875275-58875294 | Msa0740040:intron | 20.0% |
| !!! | TGTAAGTTATGTATTTTACA+GGG | + | chr5_1:58875637-58875656 | Msa0740040:intron | 20.0% |
| !!! | AGTAATCAGTAACTTTATTT+TGG | + | chr5_1:58876011-58876030 | Msa0740040:three_prime_UTR | 20.0% |
| !!! | AATTGTTAGTAACTTTGTTT+TGG | + | chr5_1:58876170-58876189 | Msa0740040:three_prime_UTR | 20.0% |
| ! | TTTAGCTGAAAAACTGAAAA+TGG | - | chr5_1:58873645-58873664 | None:intergenic | 25.0% |
| !! | TTAATAAGTTGAAGGAAGAT+AGG | + | chr5_1:58874436-58874455 | Msa0740040:CDS | 25.0% |
| !! | TAATAAGTTGAAGGAAGATA+GGG | + | chr5_1:58874437-58874456 | Msa0740040:CDS | 25.0% |
| ! | TGAAACAGTAAACAAGAATT+TGG | + | chr5_1:58874689-58874708 | Msa0740040:CDS | 25.0% |
| ! | ATTTAAGCTCATCAATAGTT+TGG | - | chr5_1:58874847-58874866 | None:intergenic | 25.0% |
| !! | TGGGTATTGTATTTCTATTA+GGG | + | chr5_1:58875294-58875313 | Msa0740040:intron | 25.0% |
| ! | ACATATCAGCTAAGATATTT+GGG | - | chr5_1:58875395-58875414 | None:intergenic | 25.0% |
| ! | AACATATCAGCTAAGATATT+TGG | - | chr5_1:58875396-58875415 | None:intergenic | 25.0% |
| ! | GCTTAAATACTTACATTTGT+AGG | - | chr5_1:58875570-58875589 | None:intergenic | 25.0% |
| !! | GTGTAAGTTATGTATTTTAC+AGG | + | chr5_1:58875636-58875655 | Msa0740040:intron | 25.0% |
| !! | GTATTTTACAGGGAAATAAA+AGG | + | chr5_1:58875647-58875666 | Msa0740040:intron | 25.0% |
| ! | GTCAAAATCATTACATGTTA+AGG | + | chr5_1:58875672-58875691 | Msa0740040:CDS | 25.0% |
| CAGAAAAATGCAAACTTTAG+CGG | - | chr5_1:58873679-58873698 | None:intergenic | 30.0% | |
| GAAACTTATGAAAGAGTTGA+AGG | + | chr5_1:58873871-58873890 | Msa0740040:CDS | 30.0% | |
| TTGAAATGGAGAAACTCTTA+AGG | + | chr5_1:58873974-58873993 | Msa0740040:CDS | 30.0% | |
| AAGTTATAATGCTCTCTTGA+AGG | + | chr5_1:58874062-58874081 | Msa0740040:CDS | 30.0% | |
| GAGAAAAAAGAATGATGAGT+TGG | + | chr5_1:58874320-58874339 | Msa0740040:CDS | 30.0% | |
| ! | TAATAGGTTGAAGGAAGATA+TGG | + | chr5_1:58874353-58874372 | Msa0740040:CDS | 30.0% |
| ! | TAATAGGTTGACGGAAAAAA+CGG | + | chr5_1:58874521-58874540 | Msa0740040:CDS | 30.0% |
| TGACAAAGTTGAAGGAAAAA+TGG | + | chr5_1:58874613-58874632 | Msa0740040:CDS | 30.0% | |
| GACAAAGTTGAAGGAAAAAT+GGG | + | chr5_1:58874614-58874633 | Msa0740040:CDS | 30.0% | |
| GCTGGAATTGAGATTAAAAA+TGG | + | chr5_1:58874657-58874676 | Msa0740040:CDS | 30.0% | |
| TCTTGCATGAAAAAGTTTCA+AGG | + | chr5_1:58874808-58874827 | Msa0740040:CDS | 30.0% | |
| AAAGTTAAAGATGCATCATC+AGG | + | chr5_1:58874954-58874973 | Msa0740040:CDS | 30.0% | |
| GGTATGGAATTGAATTCAAT+AGG | + | chr5_1:58874975-58874994 | Msa0740040:intron | 30.0% | |
| GGTGTGATCAAATAAATGTT+TGG | + | chr5_1:58874996-58875015 | Msa0740040:intron | 30.0% | |
| AAATGTTTGGTTAGATTGCT+AGG | + | chr5_1:58875009-58875028 | Msa0740040:intron | 30.0% | |
| ACTACATGCTTCAATAAAAC+AGG | - | chr5_1:58875063-58875082 | None:intergenic | 30.0% | |
| !! | GTTTTATTGAAGCATGTAGT+AGG | + | chr5_1:58875063-58875082 | Msa0740040:intron | 30.0% |
| !! | ATAACTTGTTTGAACTTGTG+AGG | + | chr5_1:58875095-58875114 | Msa0740040:intron | 30.0% |
| TCGAAGGTTAAATTAGTAAG+TGG | + | chr5_1:58875162-58875181 | Msa0740040:intron | 30.0% | |
| ! | GTGGGTATTGTATTTCTATT+AGG | + | chr5_1:58875293-58875312 | Msa0740040:intron | 30.0% |
| ! | GGGTATTGTATTTCTATTAG+GGG | + | chr5_1:58875295-58875314 | Msa0740040:intron | 30.0% |
| ATACTTACATTTGTAGGATC+AGG | - | chr5_1:58875564-58875583 | None:intergenic | 30.0% | |
| TTATGAACCATCATCTATTG+TGG | + | chr5_1:58876050-58876069 | Msa0740040:three_prime_UTR | 30.0% | |
| !!! | GATTTTAGGTTCAAGGTTCA+TGG | - | chr5_1:58873707-58873726 | None:intergenic | 35.0% |
| TTGAACCTAAAATCGAACCT+GGG | + | chr5_1:58873713-58873732 | Msa0740040:CDS | 35.0% | |
| TCTAAGTCAAGAGTTTCCAT+AGG | - | chr5_1:58873799-58873818 | None:intergenic | 35.0% | |
| ATGGAAACTCTTGACTTAGA+AGG | + | chr5_1:58873799-58873818 | Msa0740040:CDS | 35.0% | |
| GCAATACTTGAACAAGATCT+GGG | - | chr5_1:58873834-58873853 | None:intergenic | 35.0% | |
| AGCAATACTTGAACAAGATC+TGG | - | chr5_1:58873835-58873854 | None:intergenic | 35.0% | |
| ! | GATCTTGTTCAAGTATTGCT+TGG | + | chr5_1:58873835-58873854 | Msa0740040:CDS | 35.0% |
| ATTGCTTGGATCTTTACAGA+TGG | + | chr5_1:58873849-58873868 | Msa0740040:CDS | 35.0% | |
| !!! | TGAAAGAGTTGAAGGTGTTT+TGG | + | chr5_1:58873879-58873898 | Msa0740040:CDS | 35.0% |
| CTTAGAGCAGAATGTTGAAA+TGG | + | chr5_1:58873939-58873958 | Msa0740040:CDS | 35.0% | |
| GGAAAGACAACAACTTGAAA+TGG | + | chr5_1:58873960-58873979 | Msa0740040:CDS | 35.0% | |
| GGAGAAACTCTTAAGGTTAA+AGG | + | chr5_1:58873981-58874000 | Msa0740040:CDS | 35.0% | |
| GGAAGAGTTAAAGAAAAGAG+AGG | + | chr5_1:58874008-58874027 | Msa0740040:CDS | 35.0% | |
| TATAATGCTCTCTTGAAGGA+AGG | + | chr5_1:58874066-58874085 | Msa0740040:CDS | 35.0% | |
| ! | TAAGTTGACACAAGAAAGTG+AGG | + | chr5_1:58874113-58874132 | Msa0740040:CDS | 35.0% |
| ! | TTTCTAAGAAGGAGAAACGT+TGG | + | chr5_1:58874147-58874166 | Msa0740040:CDS | 35.0% |
| ! | TTCTAAGAAGGAGAAACGTT+GGG | + | chr5_1:58874148-58874167 | Msa0740040:CDS | 35.0% |
| ! | TTGACAGGTTGAACGAAAAA+AGG | + | chr5_1:58874184-58874203 | Msa0740040:CDS | 35.0% |
| ! | TGACAGGTTGAACGAAAAAA+GGG | + | chr5_1:58874185-58874204 | Msa0740040:CDS | 35.0% |
| !! | GAAGTGTTGAGACAAAAGAA+TGG | + | chr5_1:58874228-58874247 | Msa0740040:CDS | 35.0% |
| ! | TAAGTTGAAAGAAGAAAGGG+TGG | + | chr5_1:58874272-58874291 | Msa0740040:CDS | 35.0% |
| ! | GTGTGAGGTTAATAAGTTGA+AGG | + | chr5_1:58874260-58874279 | Msa0740040:CDS | 35.0% |
| AGTTGAAGTGTGAGGTTAAT+AGG | + | chr5_1:58874505-58874524 | Msa0740040:CDS | 35.0% | |
| ! | TGAGATGGAGAATAAGGTTT+TGG | + | chr5_1:58874587-58874606 | Msa0740040:CDS | 35.0% |
| ! | TTTGGAGTTGACAAAGTTGA+AGG | + | chr5_1:58874605-58874624 | Msa0740040:CDS | 35.0% |
| AAAGTTGAAGGAAAAATGGG+AGG | + | chr5_1:58874617-58874636 | Msa0740040:CDS | 35.0% | |
| TGGCAACTATAAGAGAATTG+AGG | + | chr5_1:58874709-58874728 | Msa0740040:CDS | 35.0% | |
| TTGATGAGCTTAAATGTCTC+TGG | + | chr5_1:58874852-58874871 | Msa0740040:CDS | 35.0% | |
| TAAAGATGCATCATCAGGTA+TGG | + | chr5_1:58874959-58874978 | Msa0740040:intron | 35.0% | |
| GGGGTTGTATCATATTATGT+AGG | + | chr5_1:58875314-58875333 | Msa0740040:intron | 35.0% | |
| TTGAAAACCAAGATGATTGC+TGG | + | chr5_1:58875778-58875797 | Msa0740040:CDS | 35.0% | |
| CACTGTCTTCAATTACCAAT+GGG | - | chr5_1:58875825-58875844 | None:intergenic | 35.0% | |
| TCACTGTCTTCAATTACCAA+TGG | - | chr5_1:58875826-58875845 | None:intergenic | 35.0% | |
| GTAATTGAAGACAGTGATGA+GGG | + | chr5_1:58875829-58875848 | Msa0740040:CDS | 35.0% | |
| GATGATATTGATGAAGGTGA+TGG | + | chr5_1:58875853-58875872 | Msa0740040:CDS | 35.0% | |
| AGACTTCATATGACATTAGC+AGG | + | chr5_1:58875941-58875960 | Msa0740040:three_prime_UTR | 35.0% | |
| AACAATGCCACAATAGATGA+TGG | - | chr5_1:58876060-58876079 | None:intergenic | 35.0% | |
| TAGGTTCAAGGTTCATGGTA+AGG | - | chr5_1:58873702-58873721 | None:intergenic | 40.0% | |
| !!! | CAGGTTCGATTTTAGGTTCA+AGG | - | chr5_1:58873714-58873733 | None:intergenic | 40.0% |
| CTTGAACCTAAAATCGAACC+TGG | + | chr5_1:58873712-58873731 | Msa0740040:CDS | 40.0% | |
| TCTATCAAGAATCACGTGGT+TGG | - | chr5_1:58873749-58873768 | None:intergenic | 40.0% | |
| AGAGACGAAGATGATGAAGT+TGG | + | chr5_1:58873766-58873785 | Msa0740040:CDS | 40.0% | |
| ! | TGAAGTTGGAGCATTTCCTA+TGG | + | chr5_1:58873780-58873799 | Msa0740040:CDS | 40.0% |
| !!! | TTGAAGGTGTTTTGGTGAGA+AGG | + | chr5_1:58873887-58873906 | Msa0740040:CDS | 40.0% |
| !!! | TGAAGGTGTTTTGGTGAGAA+GGG | + | chr5_1:58873888-58873907 | Msa0740040:CDS | 40.0% |
| !!! | TGTTTTGGTGAGAAGGGATT+TGG | + | chr5_1:58873894-58873913 | Msa0740040:CDS | 40.0% |
| !! | GTTTTGGTGAGAAGGGATTT+GGG | + | chr5_1:58873895-58873914 | Msa0740040:CDS | 40.0% |
| !! | TCTGCTCTAAGAGTTGAATC+TGG | - | chr5_1:58873930-58873949 | None:intergenic | 40.0% |
| ACTCTTAAGGTTAAAGGCTG+AGG | + | chr5_1:58873987-58874006 | Msa0740040:CDS | 40.0% | |
| ! | GTCTCAACACTTCAAGTTCA+TGG | - | chr5_1:58874221-58874240 | None:intergenic | 40.0% |
| GAGACAAAAGAATGGTGAGT+TGG | + | chr5_1:58874236-58874255 | Msa0740040:CDS | 40.0% | |
| AGTTGGAGTGTGAGGTTAAT+AGG | + | chr5_1:58874253-58874272 | Msa0740040:CDS | 40.0% | |
| ! | GTGTGAGGTTAATAGGTTGA+AGG | + | chr5_1:58874344-58874363 | Msa0740040:CDS | 40.0% |
| ! | TAGGTTGAAGGAAGATATGG+TGG | + | chr5_1:58874356-58874375 | Msa0740040:CDS | 40.0% |
| ! | TTGAAGGAAGATATGGTGGA+GGG | + | chr5_1:58874360-58874379 | Msa0740040:CDS | 40.0% |
| ! | TAAGTTGAAGGAAGATAGGG+TGG | + | chr5_1:58874440-58874459 | Msa0740040:CDS | 40.0% |
| ! | GAATGATGAGTTGAAGTGTG+AGG | + | chr5_1:58874497-58874516 | Msa0740040:CDS | 40.0% |
| ! | GTGTGAGGTTAATAGGTTGA+CGG | + | chr5_1:58874344-58874363 | Msa0740040:CDS | 40.0% |
| GAGAAAAATGACTGGTGAGA+TGG | + | chr5_1:58874572-58874591 | Msa0740040:CDS | 40.0% | |
| GGAGGAAGATTGTATTGTGT+GGG | + | chr5_1:58874635-58874654 | Msa0740040:CDS | 40.0% | |
| TTGACATATTACTCGCGTCT+TGG | + | chr5_1:58874769-58874788 | Msa0740040:CDS | 40.0% | |
| GCATGAAAAAGTTTCAAGGC+TGG | + | chr5_1:58874812-58874831 | Msa0740040:CDS | 40.0% | |
| TGAAAAAGTTTCAAGGCTGG+AGG | + | chr5_1:58874815-58874834 | Msa0740040:CDS | 40.0% | |
| ATGAGCTTAAATGTCTCTGG+TGG | + | chr5_1:58874855-58874874 | Msa0740040:CDS | 40.0% | |
| !! | GGATCCTCCAGTTGATTTTA+TGG | + | chr5_1:58874893-58874912 | Msa0740040:CDS | 40.0% |
| TCAGCAGCCATAAAATCAAC+TGG | - | chr5_1:58874903-58874922 | None:intergenic | 40.0% | |
| GTTTGGTTAGATTGCTAGGT+AGG | + | chr5_1:58875013-58875032 | Msa0740040:intron | 40.0% | |
| AAACAGGAAAATCACGTTCC+AGG | - | chr5_1:58875047-58875066 | None:intergenic | 40.0% | |
| ACTTGTGAGGCTACTAGTAA+TGG | + | chr5_1:58875108-58875127 | Msa0740040:intron | 40.0% | |
| TTTGTAGGATCAGGCACATA+AGG | - | chr5_1:58875555-58875574 | None:intergenic | 40.0% | |
| ATGTCAAGAAAGCCAAAGTC+AGG | + | chr5_1:58875695-58875714 | Msa0740040:CDS | 40.0% | |
| AACATGACTAGACCTGACTT+TGG | - | chr5_1:58875710-58875729 | None:intergenic | 40.0% | |
| AGTCAGGTCTAGTCATGTTA+AGG | + | chr5_1:58875711-58875730 | Msa0740040:CDS | 40.0% | |
| ATGTCGCAAAAACCAAAGTC+AGG | + | chr5_1:58875734-58875753 | Msa0740040:CDS | 40.0% | |
| TCTATCACTAGACCTGACTT+TGG | - | chr5_1:58875749-58875768 | None:intergenic | 40.0% | |
| GGTAATTGAAGACAGTGATG+AGG | + | chr5_1:58875828-58875847 | Msa0740040:CDS | 40.0% | |
| GAGGGTGATGATATTGATGA+AGG | + | chr5_1:58875847-58875866 | Msa0740040:CDS | 40.0% | |
| CTTCATATGACATTAGCAGG+AGG | + | chr5_1:58875944-58875963 | Msa0740040:three_prime_UTR | 40.0% | |
| ATCAAGAATCACGTGGTTGG+AGG | - | chr5_1:58873746-58873765 | None:intergenic | 45.0% | |
| CGTCTCTATCAAGAATCACG+TGG | - | chr5_1:58873753-58873772 | None:intergenic | 45.0% | |
| TCTCTTGAAGGAAGGCAAGA+CGG | + | chr5_1:58874074-58874093 | Msa0740040:CDS | 45.0% | |
| !! | AAACGTTGGGTTGAAGTGTG+AGG | + | chr5_1:58874161-58874180 | Msa0740040:CDS | 45.0% |
| ! | CAGGTTGAACGAAAAAAGGG+AGG | + | chr5_1:58874188-58874207 | Msa0740040:CDS | 45.0% |
| GTTGAACGAAAAAAGGGAGG+AGG | + | chr5_1:58874191-58874210 | Msa0740040:CDS | 45.0% | |
| AACGAAAAAAGGGAGGAGGA+AGG | + | chr5_1:58874195-58874214 | Msa0740040:CDS | 45.0% | |
| GTTGAAAGAAGAAAGGGTGG+AGG | + | chr5_1:58874275-58874294 | Msa0740040:CDS | 45.0% | |
| AAAGAAGAAAGGGTGGAGGA+TGG | + | chr5_1:58874279-58874298 | Msa0740040:CDS | 45.0% | |
| AAGAAGAAAGGGTGGAGGAT+GGG | + | chr5_1:58874280-58874299 | Msa0740040:CDS | 45.0% | |
| ! | GAATGATGAGTTGGAGTGTG+AGG | + | chr5_1:58874329-58874348 | Msa0740040:CDS | 45.0% |
| GTTGAAGGAAGATATGGTGG+AGG | + | chr5_1:58874359-58874378 | Msa0740040:CDS | 45.0% | |
| ! | TAGGTTGACGGAAAAAACGG+CGG | + | chr5_1:58874524-58874543 | Msa0740040:CDS | 45.0% |
| GGTGTGCAGAGAAAAATGAC+TGG | + | chr5_1:58874564-58874583 | Msa0740040:CDS | 45.0% | |
| GACTGGTGAGATGGAGAATA+AGG | + | chr5_1:58874581-58874600 | Msa0740040:CDS | 45.0% | |
| GGGAGGAAGATTGTATTGTG+TGG | + | chr5_1:58874634-58874653 | Msa0740040:CDS | 45.0% | |
| GAAGATTGTATTGTGTGGGC+TGG | + | chr5_1:58874639-58874658 | Msa0740040:CDS | 45.0% | |
| AGCTTAAATGTCTCTGGTGG+TGG | + | chr5_1:58874858-58874877 | Msa0740040:CDS | 45.0% | |
| !! | TCTGGTGGTGGAAACAATGA+GGG | + | chr5_1:58874870-58874889 | Msa0740040:CDS | 45.0% |
| GCAGCCATAAAATCAACTGG+AGG | - | chr5_1:58874900-58874919 | None:intergenic | 45.0% | |
| AGATTGCTAGGTAGGTAGCT+TGG | + | chr5_1:58875021-58875040 | Msa0740040:intron | 45.0% | |
| AGTTGGTCATGTCGAAGTAC+CGG | + | chr5_1:58875467-58875486 | Msa0740040:CDS | 45.0% | |
| !! | CTTGCAGAAGGTGCTACAAT+TGG | - | chr5_1:58875495-58875514 | None:intergenic | 45.0% |
| !! | GGCACATAAGGTATTGCAAC+TGG | - | chr5_1:58875543-58875562 | None:intergenic | 45.0% |
| ATTCACTCACACACACACAC+AGG | - | chr5_1:58875598-58875617 | None:intergenic | 45.0% | |
| ! | CCAATCTTTTGGTCTCTCTC+TGG | - | chr5_1:58875892-58875911 | None:intergenic | 45.0% |
| CCAGAGAGAGACCAAAAGAT+TGG | + | chr5_1:58875889-58875908 | Msa0740040:three_prime_UTR | 45.0% | |
| ! | GCATGCATGGACCAATCTTT+TGG | - | chr5_1:58875903-58875922 | None:intergenic | 45.0% |
| ! | AAAGATTGGTCCATGCATGC+AGG | + | chr5_1:58875903-58875922 | Msa0740040:three_prime_UTR | 45.0% |
| GTGTTATGAACCACTTCGAG+CGG | + | chr5_1:58876129-58876148 | Msa0740040:three_prime_UTR | 45.0% | |
| ! | GGTGACCCAGGTTCGATTTT+AGG | - | chr5_1:58873721-58873740 | None:intergenic | 50.0% |
| AGAATCACGTGGTTGGAGGA+AGG | - | chr5_1:58873742-58873761 | None:intergenic | 50.0% | |
| GGTTGAAGTGTGAGGTTGAC+AGG | + | chr5_1:58874169-58874188 | Msa0740040:CDS | 50.0% | |
| ! | GAATGGTGAGTTGGAGTGTG+AGG | + | chr5_1:58874245-58874264 | Msa0740040:CDS | 50.0% |
| ! | AAGGAAGATATGGTGGAGGG+TGG | + | chr5_1:58874363-58874382 | Msa0740040:CDS | 50.0% |
| ! | AGGAAGATATGGTGGAGGGT+GGG | + | chr5_1:58874364-58874383 | Msa0740040:CDS | 50.0% |
| GAGTGATGAGCTAGAGTGTG+AGG | + | chr5_1:58874413-58874432 | Msa0740040:CDS | 50.0% | |
| GTTGAAGGAAGATAGGGTGG+AGG | + | chr5_1:58874443-58874462 | Msa0740040:CDS | 50.0% | |
| AAGGAAGATAGGGTGGAGGA+TGG | + | chr5_1:58874447-58874466 | Msa0740040:CDS | 50.0% | |
| AGGAAGATAGGGTGGAGGAT+GGG | + | chr5_1:58874448-58874467 | Msa0740040:CDS | 50.0% | |
| ACGGAAAAAACGGCGGATGA+TGG | + | chr5_1:58874531-58874550 | Msa0740040:CDS | 50.0% | |
| !! | CTCTGGTGGTGGAAACAATG+AGG | + | chr5_1:58874869-58874888 | Msa0740040:CDS | 50.0% |
| !! | CTGGTGGTGGAAACAATGAG+GGG | + | chr5_1:58874871-58874890 | Msa0740040:CDS | 50.0% |
| !! | TGGTGGTGGAAACAATGAGG+GGG | + | chr5_1:58874872-58874891 | Msa0740040:CDS | 50.0% |
| CTGCATTGTTCTGCACCAGT+TGG | + | chr5_1:58875450-58875469 | Msa0740040:CDS | 50.0% | |
| GGTACTTCGACATGACCAAC+TGG | - | chr5_1:58875468-58875487 | None:intergenic | 50.0% | |
| !! | GAAGGTGCTACAATTGGTGC+CGG | - | chr5_1:58875489-58875508 | None:intergenic | 50.0% |
| TGTAGCACCTTCTGCAAGTC+AGG | + | chr5_1:58875497-58875516 | Msa0740040:CDS | 50.0% | |
| ! | GGATCAACCTGACTTGCAGA+AGG | - | chr5_1:58875507-58875526 | None:intergenic | 50.0% |
| GCAACTGGTGCATTTGCAAC+AGG | - | chr5_1:58875528-58875547 | None:intergenic | 50.0% | |
| ACCAAGATGATTGCTGGTCC+AGG | + | chr5_1:58875784-58875803 | Msa0740040:CDS | 50.0% | |
| CAAAGATGCAAGCAGCCCAT+TGG | + | chr5_1:58875807-58875826 | Msa0740040:CDS | 50.0% | |
| GTCCATGCATGCAGGCAATT+AGG | + | chr5_1:58875911-58875930 | Msa0740040:three_prime_UTR | 50.0% | |
| GTCCTAATTGCCTGCATGCA+TGG | - | chr5_1:58875916-58875935 | None:intergenic | 50.0% | |
| GCCTGGACCAGCAATCATCT+TGG | - | chr5_1:58875788-58875807 | None:intergenic | 55.0% | |
| GATACAGAGACCGCTCGAAG+TGG | - | chr5_1:58876142-58876161 | None:intergenic | 55.0% | |
| TGGTTGGAGGAAGGTGACCC+AGG | - | chr5_1:58873733-58873752 | None:intergenic | 60.0% | |
| ! | GCGGATGATGGCTGTGAGCT+TGG | + | chr5_1:58874543-58874562 | Msa0740040:CDS | 60.0% |
| GCTAGGTAGGTAGCTTGGCC+TGG | + | chr5_1:58875026-58875045 | Msa0740040:intron | 60.0% | |
| GGGCTGCTTGCATCTTTGCC+TGG | - | chr5_1:58875805-58875824 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 58873635 | 58876208 | 58873635 | ID=Msa0740040;Name=Msa0740040 |
| chr5_1 | mRNA | 58873635 | 58876208 | 58873635 | ID=Msa0740040-mRNA-1;Parent=Msa0740040;Name=Msa0740040-mRNA-1;_AED=0.01;_eAED=0.01;_QI=71|0.5|0.66|1|1|1|3|320|556 |
| chr5_1 | exon | 58873635 | 58874975 | 58873635 | ID=Msa0740040-mRNA-1:exon:16801;Parent=Msa0740040-mRNA-1 |
| chr5_1 | exon | 58875406 | 58875575 | 58875406 | ID=Msa0740040-mRNA-1:exon:16802;Parent=Msa0740040-mRNA-1 |
| chr5_1 | exon | 58875658 | 58876208 | 58875658 | ID=Msa0740040-mRNA-1:exon:16803;Parent=Msa0740040-mRNA-1 |
| chr5_1 | five_prime_UTR | 58873635 | 58873705 | 58873635 | ID=Msa0740040-mRNA-1:five_prime_utr;Parent=Msa0740040-mRNA-1 |
| chr5_1 | CDS | 58873706 | 58874975 | 58873706 | ID=Msa0740040-mRNA-1:cds;Parent=Msa0740040-mRNA-1 |
| chr5_1 | CDS | 58875406 | 58875575 | 58875406 | ID=Msa0740040-mRNA-1:cds;Parent=Msa0740040-mRNA-1 |
| chr5_1 | CDS | 58875658 | 58875888 | 58875658 | ID=Msa0740040-mRNA-1:cds;Parent=Msa0740040-mRNA-1 |
| chr5_1 | three_prime_UTR | 58875889 | 58876208 | 58875889 | ID=Msa0740040-mRNA-1:three_prime_utr;Parent=Msa0740040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
