AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1219060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1219060 MtrunA17_Chr4g0068871 93.354 632 9 2 1 599 1 632 0.0 1210
Msa1219060 MtrunA17_Chr4g0043091 25.478 471 260 15 113 503 46 505 1.16e-32 131
Msa1219060 MtrunA17_Chr4g0042171 28.009 432 225 16 149 505 86 506 2.57e-31 127
Msa1219060 MtrunA17_Chr4g0033311 27.913 412 218 13 150 491 103 505 3.55e-31 127
Msa1219060 MtrunA17_Chr4g0033201 28.058 417 227 14 150 499 100 510 2.66e-30 125
Msa1219060 MtrunA17_Chr4g0074551 26.398 447 240 15 150 519 113 547 7.03e-30 124
Msa1219060 MtrunA17_Chr3g0088441 25.870 460 247 16 114 491 57 504 4.86e-29 121
Msa1219060 MtrunA17_Chr4g0033321 25.882 425 230 12 150 501 97 509 7.10e-29 120
Msa1219060 MtrunA17_Chr4g0033191 27.273 418 229 13 150 499 107 517 1.52e-28 119
Msa1219060 MtrunA17_Chr4g0033401 26.024 415 222 12 150 491 98 500 2.88e-28 119
Msa1219060 MtrunA17_Chr6g0482071 26.230 427 240 12 150 508 101 520 3.69e-28 118
Msa1219060 MtrunA17_Chr2g0317841 25.641 429 239 15 150 510 95 511 6.58e-28 117
Msa1219060 MtrunA17_Chr4g0010501 25.743 404 231 12 150 491 88 484 9.81e-28 117
Msa1219060 MtrunA17_Chr3g0087261 25.647 425 245 10 143 503 94 511 1.12e-27 117
Msa1219060 MtrunA17_Chr4g0006131 25.701 428 217 13 150 504 105 504 1.12e-27 117
Msa1219060 MtrunA17_Chr4g0033331 26.392 413 223 13 150 491 103 505 1.37e-27 117
Msa1219060 MtrunA17_Chr2g0329201 25.980 408 221 15 150 486 95 492 1.46e-27 116
Msa1219060 MtrunA17_Chr6g0482131 26.406 409 228 14 150 491 100 502 1.51e-27 116
Msa1219060 MtrunA17_Chr4g0033231 27.157 394 228 13 150 495 105 487 1.66e-27 116
Msa1219060 MtrunA17_Chr4g0006111 26.291 426 208 14 150 499 128 523 1.79e-27 116
Msa1219060 MtrunA17_Chr3g0087271 28.000 425 235 13 143 503 95 512 2.22e-27 116
Msa1219060 MtrunA17_Chr2g0329191 26.139 417 234 14 150 499 98 507 2.91e-27 115
Msa1219060 MtrunA17_Chr4g0074561 26.168 428 234 15 150 505 99 516 3.90e-27 115
Msa1219060 MtrunA17_Chr2g0288071 25.882 425 235 12 150 504 131 545 4.72e-27 115
Msa1219060 MtrunA17_Chr2g0301231 27.229 415 206 15 155 499 2 390 6.50e-27 113
Msa1219060 MtrunA17_Chr3g0090131 26.764 411 234 11 150 502 84 485 2.47e-26 112
Msa1219060 MtrunA17_Chr4g0033341 26.450 431 235 13 136 491 110 533 3.03e-26 113
Msa1219060 MtrunA17_Chr4g0033271 26.379 417 234 14 150 499 99 509 4.10e-26 112
Msa1219060 MtrunA17_Chr7g0234111 27.273 418 219 16 155 507 137 534 7.66e-26 111
Msa1219060 MtrunA17_Chr7g0234131 26.777 422 226 13 150 504 132 537 7.71e-26 111
Msa1219060 MtrunA17_Chr4g0033261 27.750 400 218 15 150 495 105 487 9.48e-26 111
Msa1219060 MtrunA17_Chr7g0234091 25.708 424 243 13 138 500 120 532 1.50e-25 110
Msa1219060 MtrunA17_Chr2g0288021 24.292 424 241 11 150 503 98 511 1.84e-25 110
Msa1219060 MtrunA17_Chr2g0317821 25.754 431 236 15 150 510 95 511 2.03e-25 110
Msa1219060 MtrunA17_Chr3g0090111 25.325 462 255 15 114 502 38 482 3.76e-25 109
Msa1219060 MtrunA17_Chr6g0482081 25.058 431 241 14 150 508 100 520 3.08e-23 103
Msa1219060 MtrunA17_Chr2g0329321 23.990 421 213 13 150 499 102 486 6.26e-22 99.4
Msa1219060 MtrunA17_Chr1g0195611 25.799 407 238 12 150 499 88 487 1.02e-20 95.9
Msa1219060 MtrunA17_Chr6g0482951 24.471 425 246 15 142 503 102 514 5.35e-20 93.6
Msa1219060 MtrunA17_Chr5g0430451 22.897 428 218 13 150 499 103 496 2.21e-19 91.7
Msa1219060 MtrunA17_Chr5g0428831 24.265 408 244 10 150 499 88 488 2.46e-18 88.6
Msa1219060 MtrunA17_Chr5g0418871 30.534 131 85 2 150 279 46 171 1.37e-14 75.5
Msa1219060 MtrunA17_Chr3g0087201 24.299 321 169 12 237 491 22 334 1.69e-14 75.1
Msa1219060 MtrunA17_Chr1g0195641 29.050 179 117 4 150 323 88 261 4.35e-14 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1219060 AT3G06510.1 64.407 590 193 4 4 578 1 588 0.0 800
Msa1219060 AT3G06510.2 60.897 624 193 5 4 578 1 622 0.0 784
Msa1219060 AT3G60140.1 26.834 477 261 18 126 528 68 530 8.56e-32 130
Msa1219060 AT1G26560.1 25.219 456 247 15 129 501 64 508 2.19e-31 128
Msa1219060 AT3G60120.1 26.606 436 239 12 136 499 63 489 2.19e-31 129
Msa1219060 AT3G60130.3 28.431 408 222 14 150 499 42 437 2.34e-31 127
Msa1219060 AT3G60130.2 28.162 419 220 14 150 499 42 448 5.35e-31 126
Msa1219060 AT3G60130.1 28.162 419 220 14 150 499 94 500 6.70e-31 127
Msa1219060 AT5G44640.1 26.683 416 238 10 150 503 95 505 2.98e-30 125
Msa1219060 AT2G44470.3 27.477 444 234 17 133 500 75 506 4.19e-30 125
Msa1219060 AT2G44490.1 26.202 416 224 12 150 491 78 484 2.19e-29 123
Msa1219060 AT2G25630.1 26.434 401 241 10 150 503 94 487 2.87e-29 122
Msa1219060 AT5G42260.1 26.961 408 231 10 150 495 95 497 4.04e-29 121
Msa1219060 AT2G32860.1 24.946 461 256 16 128 506 125 577 6.04e-29 122
Msa1219060 AT2G32860.2 24.675 462 257 17 128 506 125 578 6.59e-29 122
Msa1219060 AT2G44450.1 26.442 416 238 12 150 503 95 504 1.58e-28 120
Msa1219060 AT1G66270.1 27.460 437 239 15 136 502 85 513 3.06e-28 119
Msa1219060 AT3G09260.1 26.366 421 237 14 150 502 98 513 4.85e-28 118
Msa1219060 AT1G75940.1 24.236 458 252 12 125 502 78 520 5.79e-28 118
Msa1219060 AT1G66280.1 28.132 423 226 16 150 502 99 513 7.14e-28 118
Msa1219060 AT3G21370.1 24.558 452 256 14 125 502 74 514 1.50e-27 117
Msa1219060 AT5G36890.1 25.828 453 261 13 114 499 35 479 1.77e-27 116
Msa1219060 AT2G44460.1 26.697 442 232 17 150 511 92 521 1.83e-27 117
Msa1219060 AT5G36890.2 25.828 453 261 13 114 499 35 479 2.03e-27 116
Msa1219060 AT4G21760.2 25.248 404 233 11 150 491 117 513 8.33e-27 115
Msa1219060 AT4G21760.1 25.381 394 235 11 150 491 117 503 2.87e-26 113
Msa1219060 AT1G52400.3 24.762 420 240 11 150 499 102 515 4.02e-26 112
Msa1219060 AT1G52400.1 24.762 420 240 11 150 499 102 515 4.02e-26 112
Msa1219060 AT1G66270.2 27.231 437 238 16 136 502 85 511 9.41e-26 111
Msa1219060 AT5G24550.1 24.711 433 251 14 133 495 78 505 2.55e-25 110
Msa1219060 AT5G28510.1 23.191 470 275 14 114 502 58 522 5.38e-25 109
Msa1219060 AT5G54570.1 25.708 424 231 14 149 499 93 505 7.01e-25 109
Msa1219060 AT2G44480.2 24.634 410 234 11 155 495 2 405 4.13e-24 105
Msa1219060 AT5G54570.2 25.837 418 226 14 155 499 2 408 4.30e-24 105
Msa1219060 AT2G44480.1 24.634 410 234 11 155 495 104 507 5.82e-24 106
Msa1219060 AT2G44480.3 24.634 410 234 11 155 495 135 538 6.75e-24 106
Msa1219060 AT5G24540.1 24.944 445 249 14 122 486 57 496 7.23e-24 106
Msa1219060 AT3G03640.1 24.590 427 247 16 143 499 91 512 9.32e-24 105
Msa1219060 AT1G61820.1 26.389 432 221 16 158 510 102 515 1.44e-23 105
Msa1219060 AT1G61810.1 25.688 436 237 18 150 511 97 519 6.59e-23 103
Msa1219060 AT1G61810.5 25.935 428 230 18 158 511 5 419 7.54e-23 102
Msa1219060 AT1G61810.3 25.990 404 213 17 150 479 97 488 2.70e-22 101
Msa1219060 AT1G51470.1 24.879 414 239 11 150 500 106 510 2.87e-22 100
Msa1219060 AT1G47600.2 24.460 417 236 12 150 500 106 509 6.47e-22 100
Msa1219060 AT1G47600.1 24.402 418 236 12 150 500 106 510 8.98e-22 99.4
Msa1219060 AT1G02850.1 27.532 385 231 14 150 499 87 458 3.84e-21 97.4
Msa1219060 AT1G02850.2 27.251 411 226 16 150 499 87 485 5.39e-20 94.0
Msa1219060 AT3G18080.1 24.519 416 238 14 150 499 102 507 7.19e-20 93.6
Msa1219060 AT3G18070.1 22.947 414 245 13 150 499 93 496 7.26e-20 93.6
Msa1219060 AT3G18070.3 22.947 414 239 13 150 499 93 490 6.99e-19 90.5
Msa1219060 AT1G02850.5 25.806 434 226 16 150 499 87 508 1.28e-18 89.7
Msa1219060 AT4G27820.1 23.488 430 263 12 150 520 82 504 1.49e-18 89.4
Msa1219060 AT4G22100.1 24.694 409 242 12 150 499 81 482 2.07e-18 89.0
Msa1219060 AT3G62750.1 23.810 378 233 10 150 479 82 452 3.77e-18 88.2
Msa1219060 AT1G45191.2 24.645 422 237 15 150 505 88 494 3.91e-18 88.2
Msa1219060 AT3G62750.2 23.810 378 233 10 150 479 108 478 4.95e-18 87.8
Msa1219060 AT2G44460.2 26.042 384 195 16 208 511 1 375 5.06e-18 87.4
Msa1219060 AT2G44450.2 25.562 356 200 11 210 503 1 353 8.65e-18 85.9
Msa1219060 AT4G27820.2 23.404 423 258 12 158 521 5 420 1.12e-17 86.3
Msa1219060 AT4G27820.3 23.404 423 258 12 158 521 5 420 1.12e-17 86.3
Msa1219060 AT4G27830.1 24.750 400 235 14 150 491 85 476 1.13e-17 86.7
Msa1219060 AT1G45191.4 24.265 408 250 15 150 505 88 488 1.28e-17 86.7
Msa1219060 AT1G02850.4 25.747 435 226 17 150 499 87 509 2.60e-17 85.9
Msa1219060 AT1G45191.6 23.684 418 251 15 150 505 88 499 3.71e-17 85.1
Msa1219060 AT1G45191.1 23.684 418 251 15 150 505 100 511 4.38e-17 85.1
Msa1219060 AT1G61820.3 25.840 387 194 15 203 510 4 376 9.53e-17 82.8
Msa1219060 AT1G60090.2 22.947 414 241 13 150 499 83 482 1.50e-15 80.1
Msa1219060 AT3G60140.2 25.698 358 191 15 126 421 68 412 3.73e-15 78.6
Msa1219060 AT3G18070.2 23.404 329 186 10 234 499 94 419 7.31e-15 77.4
Msa1219060 AT2G44470.1 24.422 389 207 16 133 446 75 451 1.82e-14 76.6
Msa1219060 AT5G24540.2 28.125 160 101 4 122 270 57 213 7.50e-14 74.7
Msa1219060 AT1G60090.1 22.276 413 252 14 150 499 83 489 7.62e-14 74.7
Msa1219060 AT2G44480.4 27.222 180 125 4 155 331 135 311 9.80e-14 73.9
Msa1219060 AT1G52400.2 22.466 365 208 10 150 445 102 460 1.96e-13 73.2
Msa1219060 AT3G62750.4 23.209 349 213 10 150 450 108 449 5.85e-13 71.6
Msa1219060 AT5G54570.3 28.272 191 120 6 149 331 93 274 6.63e-13 71.6
Msa1219060 AT3G62750.7 31.126 151 83 4 150 285 82 226 6.92e-13 70.9
Msa1219060 AT3G62750.8 31.126 151 83 4 150 285 82 226 6.92e-13 70.9
Msa1219060 AT2G44470.2 25.869 259 142 10 150 367 92 341 9.84e-13 70.9
Msa1219060 AT3G62750.3 31.126 151 83 4 150 285 108 252 1.18e-12 70.9
Msa1219060 AT1G02850.3 31.452 124 79 2 150 272 87 205 3.57e-12 69.3
Msa1219060 AT1G45191.3 29.365 126 83 2 150 274 88 208 4.43e-12 68.9
Msa1219060 AT1G45191.5 29.365 126 83 2 150 274 88 208 4.96e-12 68.6
Msa1219060 AT3G18070.7 23.226 310 172 10 253 499 1 307 1.28e-11 66.6

Find 177 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGACTTACAGATTCTTTA+AGG 0.139827 8_1:+81805917 None:intergenic
CCTTTCATTATTGCTGAAAA+TGG 0.160067 8_1:-81804509 Msa1219060:CDS
ATATAAGTATTGCTGTTAAT+TGG 0.180457 8_1:+81802591 None:intergenic
TCTGGACTATTTCTGATAAC+TGG 0.226760 8_1:-81804291 Msa1219060:CDS
CTGTGCTTGGTTACCTCTTC+TGG 0.248895 8_1:-81804309 Msa1219060:CDS
CGCCAATCTCTTTCTATATA+AGG 0.257777 8_1:+81803197 None:intergenic
TTCAACGATTCTCCCTAAAA+AGG 0.257864 8_1:-81803112 Msa1219060:CDS
TTAGATGCTTGTATCTTTCA+TGG 0.258804 8_1:+81804537 None:intergenic
TCCTGATACAGAACTAAAAT+TGG 0.270840 8_1:-81806016 Msa1219060:CDS
GGGAGGAGAGATTAAGGTTT+TGG 0.271168 8_1:-81806044 Msa1219060:CDS
TGTACATCAGGAAGCGATTT+CGG 0.284236 8_1:-81804651 Msa1219060:intron
GATTCTTTAAGGCTGTTTAC+TGG 0.292666 8_1:+81805928 None:intergenic
GAAACAAGTAACAGTCCTTT+TGG 0.294344 8_1:+81802627 None:intergenic
GTACATCAGGAAGCGATTTC+GGG 0.300370 8_1:-81804650 Msa1219060:intron
TGTATGCTTACTTACTGTTC+TGG 0.302328 8_1:-81805233 Msa1219060:CDS
CTAAAATTGGCCAAGGATAC+TGG 0.313762 8_1:-81806003 Msa1219060:CDS
CCCTCGTTGTGCAGATGATA+TGG 0.327589 8_1:+81806945 None:intergenic
CATCTTCAATTCGGACTCAT+TGG 0.327888 8_1:+81802536 None:intergenic
TATCAGATTTAGTAGACTAT+TGG 0.332759 8_1:-81805283 Msa1219060:CDS
TTGTCCACAGCCCGATAAAA+TGG 0.337862 8_1:+81803994 None:intergenic
GAATAATGAATCTTGAGAAT+TGG 0.341853 8_1:+81803132 None:intergenic
GATGGATATGGTCCCAAGTT+TGG 0.341947 8_1:-81804259 Msa1219060:CDS
TTTATAGGCGTTAACTATTA+CGG 0.351253 8_1:-81804748 Msa1219060:CDS
TTCTATATAAGGCCGCTGTA+TGG 0.354083 8_1:+81803208 None:intergenic
AAAGACAGTGGATTATTTCA+TGG 0.355262 8_1:-81805574 Msa1219060:CDS
GCTATAAGTGGATTATCAAT+AGG 0.360657 8_1:-81805686 Msa1219060:CDS
ATCAATAGGGTTCGATCATA+TGG 0.366808 8_1:-81805672 Msa1219060:CDS
ATCTGCACAACGAGGGCTTA+AGG 0.372817 8_1:-81806938 Msa1219060:CDS
CGGCGAGTTTAGTGGCAGTT+AGG 0.376526 8_1:+81807845 None:intergenic
TCCGCTACAGAGATTCATTC+TGG 0.381756 8_1:-81802865 Msa1219060:intron
GTAGCAGCCTCTAGCATATC+AGG 0.383932 8_1:+81805191 None:intergenic
ATAGAAAGAGATTGGCGGTT+TGG 0.384777 8_1:-81803191 Msa1219060:CDS
ATCAGATTTAGTAGACTATT+GGG 0.388367 8_1:-81805282 Msa1219060:CDS
TCGTAGTTTCCAGAACTTAA+CGG 0.389659 8_1:-81807934 Msa1219060:five_prime_UTR
AATGATGAGTACAGTGAATC+TGG 0.391568 8_1:-81804605 Msa1219060:CDS
TTATGCCAAGCAGTTACATT+AGG 0.392142 8_1:+81806817 None:intergenic
TTGGATATTTCATCGATGAA+TGG 0.395990 8_1:+81804781 None:intergenic
AAGGACTGTTACTTGTTTCA+AGG 0.400317 8_1:-81802623 Msa1219060:three_prime_UTR
TACTAGAACGCTGAGTCATT+TGG 0.403300 8_1:+81802962 None:intergenic
TGGGAGTGGGCTGATGGATA+TGG 0.403938 8_1:-81804271 Msa1219060:CDS
TACTGTTCTGGAACCTGGCC+TGG 0.406059 8_1:-81805221 Msa1219060:CDS
CACATATTCACCTGAGTTCG+TGG 0.407646 8_1:+81805090 None:intergenic
TCATCACTCACTTCCACCCT+GGG 0.420608 8_1:-81805625 Msa1219060:CDS
AACTGCGACAAGTCCAAACT+TGG 0.422766 8_1:+81804246 None:intergenic
TTCATCACTCACTTCCACCC+TGG 0.424450 8_1:-81805626 Msa1219060:CDS
TTACTTACTGTTCTGGAACC+TGG 0.428685 8_1:-81805226 Msa1219060:CDS
CTACAGGGTGTGCCTGTGCT+TGG 0.432531 8_1:-81804322 Msa1219060:intron
GAGAAATACATGGAAGTAGA+TGG 0.433306 8_1:-81806865 Msa1219060:CDS
GCAGAAAGTAGATGCTTTGA+TGG 0.437544 8_1:-81807001 Msa1219060:CDS
TCTGAACAATGCAGCAAAGC+TGG 0.438401 8_1:+81802764 None:intergenic
GCTGAACAAGAGAGTGTTGC+CGG 0.439290 8_1:-81807030 Msa1219060:intron
ATATCCAATGCATGGCCTGC+TGG 0.439716 8_1:+81805144 None:intergenic
TCTGCACAACGAGGGCTTAA+GGG 0.439802 8_1:-81806937 Msa1219060:CDS
AGAATTGGCTTAAGTAATCC+TGG 0.442485 8_1:+81803147 None:intergenic
ATGGGCTCTGCCACTGCTGA+TGG 0.446601 8_1:-81806982 Msa1219060:CDS
GTATTACTTTGAGTAGTAAG+AGG 0.447375 8_1:+81803009 None:intergenic
ATTACCGGTAATGTTGAAAT+CGG 0.448793 8_1:+81807711 None:intergenic
ATACTCATACCGTTAAGTTC+TGG 0.450502 8_1:+81807925 None:intergenic
TGATATTGCTGCCGTTTCAC+TGG 0.452144 8_1:-81804824 Msa1219060:CDS
CGGGACTGCATTATATATCA+AGG 0.454242 8_1:-81802803 Msa1219060:three_prime_UTR
ACCTCCATAATCACCGGCCC+AGG 0.458461 8_1:+81805608 None:intergenic
GGGTAACAAGAAGTCTCTTA+AGG 0.459175 8_1:-81806917 Msa1219060:CDS
CAGGAAGCGATTTCGGGTGC+TGG 0.460871 8_1:-81804644 Msa1219060:CDS
TTAGGTCAACTATGCTGCAT+TGG 0.461249 8_1:-81805712 Msa1219060:intron
AAATGGAAGAGAATTGCATT+CGG 0.461325 8_1:-81802823 Msa1219060:three_prime_UTR
TGGATATTTCATCGATGAAT+GGG 0.467254 8_1:+81804782 None:intergenic
AGTAAATGCTCCAAGAGATA+TGG 0.467848 8_1:+81804455 None:intergenic
AACAGTAACACCAGTATCCT+TGG 0.478658 8_1:+81805993 None:intergenic
GAGATTTGATAAGTTATCAA+TGG 0.479234 8_1:+81803038 None:intergenic
AACTCATCAAATCAAATAGT+TGG 0.480032 8_1:-81804889 Msa1219060:CDS
TCTATATAAGGCCGCTGTAT+GGG 0.481662 8_1:+81803209 None:intergenic
AATGGAAGAGAATTGCATTC+GGG 0.483008 8_1:-81802822 Msa1219060:three_prime_UTR
CTCGCCGATTTCAACATTAC+CGG 0.484377 8_1:-81807715 Msa1219060:intron
CAAGTGAGAGCTTACGGATG+TGG 0.488260 8_1:+81806790 None:intergenic
GGCCTTATATAGAAAGAGAT+TGG 0.490186 8_1:-81803199 Msa1219060:CDS
GAAGTCTCTTAAGGTAGCTA+TGG 0.490346 8_1:-81806908 Msa1219060:CDS
TCTTGTCTTCTTCTCTTTAG+CGG 0.491603 8_1:+81804017 None:intergenic
GATCCGCCGACCATATCTCT+TGG 0.492133 8_1:-81804465 Msa1219060:CDS
CTGGACTATTTCTGATAACT+GGG 0.492878 8_1:-81804290 Msa1219060:CDS
TGTATTAATGATATGCCAAA+AGG 0.493119 8_1:-81802642 Msa1219060:three_prime_UTR
CTATAAGTGGATTATCAATA+GGG 0.493867 8_1:-81805685 Msa1219060:CDS
CACTCACTTCCACCCTGGGC+CGG 0.494939 8_1:-81805621 Msa1219060:CDS
TAAAGCTCCGGCGAGTTTAG+TGG 0.495185 8_1:+81807837 None:intergenic
ATCAGGATGTCCACCAGGCC+AGG 0.496467 8_1:+81805208 None:intergenic
AACATGCGATATAAGCCATC+AGG 0.498179 8_1:+81804569 None:intergenic
CATCGATAGGGGAAGTGAAA+CGG 0.498202 8_1:+81807752 None:intergenic
GCTACTTCCGCACTTCCTAC+AGG 0.498844 8_1:-81805173 Msa1219060:CDS
TGATTATGGAGGTTGGAAGC+TGG 0.500135 8_1:-81805598 Msa1219060:CDS
ATATCTAGAAATGAATGAAA+AGG 0.501587 8_1:-81808077 Msa1219060:five_prime_UTR
ATCATCGTGTGTAACTTTAC+CGG 0.504753 8_1:+81804071 None:intergenic
GTTGAAATCGGCGAGAGTAT+CGG 0.506142 8_1:+81807723 None:intergenic
TTAGAAAACAGATGGTAAGA+AGG 0.506880 8_1:+81804190 None:intergenic
GATAACTGGGAGTGGGCTGA+TGG 0.509425 8_1:-81804277 Msa1219060:CDS
TCCGTGCAAGATTATTTGCT+CGG 0.509949 8_1:+81804221 None:intergenic
TTATGAGATGGATGACCTCC+AGG 0.512096 8_1:-81803165 Msa1219060:CDS
TTTCTCAAATCCTCTGATCA+TGG 0.512160 8_1:+81806882 None:intergenic
CTGCATTGGAGCGCTATAAG+TGG 0.513111 8_1:-81805698 Msa1219060:CDS
GGGTGCTGGCCTGAAGCTTG+TGG 0.519846 8_1:-81804630 Msa1219060:CDS
TCTTTAAATTATGTCTCACT+TGG 0.520414 8_1:+81808127 None:intergenic
TGAAACTATCGTCATGGTAG+TGG 0.527279 8_1:+81807873 None:intergenic
ATCTACTTTCTGCTCAGCAC+CGG 0.527534 8_1:+81807011 None:intergenic
ATACATGGAAGTAGATGGAC+AGG 0.527787 8_1:-81806860 Msa1219060:CDS
ACGATGATCGTGATAACGCT+TGG 0.531618 8_1:-81804056 Msa1219060:CDS
TTTGTTGCGAAAACGAGAGA+AGG 0.531839 8_1:+81807783 None:intergenic
TACATATGGATCTTCAGCAC+AGG 0.533400 8_1:-81802900 Msa1219060:intron
GGGCCGGTGATTATGGAGGT+TGG 0.535413 8_1:-81805605 Msa1219060:CDS
TCTAGAAATGAATGAAAAGG+AGG 0.538209 8_1:-81808074 Msa1219060:five_prime_UTR
GTATCGGAGGATTCATCGAT+AGG 0.538658 8_1:+81807739 None:intergenic
CAGAGGATTTGAGAAATACA+TGG 0.540066 8_1:-81806875 Msa1219060:CDS
TGATTGCAGGTTGTAAGTAC+CGG 0.546506 8_1:-81804090 Msa1219060:intron
TATCGGAGGATTCATCGATA+GGG 0.548818 8_1:+81807740 None:intergenic
GGTTCGATCATATGGAATGA+AGG 0.554841 8_1:-81805664 Msa1219060:CDS
CGAGTTGATCATTCTTGTGA+GGG 0.561286 8_1:+81802932 None:intergenic
GATATCTGTTGCACACTCAA+AGG 0.564342 8_1:-81805126 Msa1219060:CDS
AGAGAAGGAAAATGCATTGG+CGG 0.565039 8_1:+81807798 None:intergenic
CTATTTCTGATAACTGGGAG+TGG 0.565300 8_1:-81804285 Msa1219060:CDS
CAATGAATTAGCCAGTGAAA+CGG 0.566575 8_1:+81804813 None:intergenic
AGCAATATCAAACAGACCAT+AGG 0.568096 8_1:+81804837 None:intergenic
AGCATATCAGGATGTCCACC+AGG 0.569201 8_1:+81805203 None:intergenic
ACATTCCTAATGTAACTGCT+TGG 0.569411 8_1:-81806822 Msa1219060:CDS
TTCTGGAAACTACGAAGAAG+AGG 0.569890 8_1:+81807942 None:intergenic
TATCAGAAATAGTCCAGAAG+AGG 0.574316 8_1:+81804296 None:intergenic
AGGCTGTTTACTGGCTCATG+AGG 0.574448 8_1:+81805937 None:intergenic
CTTATATAGAAAGAGATTGG+CGG 0.576039 8_1:-81803196 Msa1219060:CDS
ATCGTCATGGTAGTGGCGAG+TGG 0.576491 8_1:+81807880 None:intergenic
TAGAAAACAGATGGTAAGAA+GGG 0.578554 8_1:+81804191 None:intergenic
CTAGAAATGAATGAAAAGGA+GGG 0.578721 8_1:-81808073 Msa1219060:five_prime_UTR
TACAAACTTTAGAAAACAGA+TGG 0.582069 8_1:+81804182 None:intergenic
CAGAAGAGGTAACCAAGCAC+AGG 0.582991 8_1:+81804310 None:intergenic
GCAATATCAAACAGACCATA+GGG 0.584114 8_1:+81804838 None:intergenic
GTCTCTTAAGGTAGCTATGG+AGG 0.585522 8_1:-81806905 Msa1219060:CDS
AAGTAAGCATACAGAAGACA+TGG 0.587256 8_1:+81805243 None:intergenic
ATGATTACATCCACGAACTC+AGG 0.587432 8_1:-81805100 Msa1219060:intron
TGCAACAGATATCCAATGCA+TGG 0.588834 8_1:+81805136 None:intergenic
TACAGAACTAAAATTGGCCA+AGG 0.590023 8_1:-81806010 Msa1219060:CDS
AGTGAGAGTGACTAAAGCTC+CGG 0.590174 8_1:+81807825 None:intergenic
ACCGAGCAAATAATCTTGCA+CGG 0.590207 8_1:-81804222 Msa1219060:CDS
TCAATGGCTAAGATCAAAGC+GGG 0.590429 8_1:+81803054 None:intergenic
TATTTCTGATAACTGGGAGT+GGG 0.592426 8_1:-81804284 Msa1219060:CDS
ACGAGAGAAGGAAAATGCAT+TGG 0.595701 8_1:+81807795 None:intergenic
TCGTCATGGTAGTGGCGAGT+GGG 0.597939 8_1:+81807881 None:intergenic
CTTCCAACCTCCATAATCAC+CGG 0.604506 8_1:+81805602 None:intergenic
TGTTCTGGAACCTGGCCTGG+TGG 0.605992 8_1:-81805218 Msa1219060:CDS
CAGAAAGTAGATGCTTTGAT+GGG 0.609720 8_1:-81807000 Msa1219060:CDS
CACAAGAATGATCAACTCGA+TGG 0.612292 8_1:-81802928 Msa1219060:three_prime_UTR
GCGGTTTGGTCATTATGAGA+TGG 0.613726 8_1:-81803177 Msa1219060:CDS
TCGAGTTGATCATTCTTGTG+AGG 0.615622 8_1:+81802931 None:intergenic
CCCTGGGCCGGTGATTATGG+AGG 0.616382 8_1:-81805609 Msa1219060:CDS
ATCGGAGGATTCATCGATAG+GGG 0.619526 8_1:+81807741 None:intergenic
GGACGTGGAGTATATCCTGA+TGG 0.620310 8_1:-81804584 Msa1219060:CDS
ATCATCTCATCTTAGAACAG+TGG 0.625339 8_1:-81807999 Msa1219060:five_prime_UTR
ATGGAAGTAGATGGACAGGA+AGG 0.625915 8_1:-81806856 Msa1219060:CDS
GAAGAGTGAAACTATCGTCA+TGG 0.627384 8_1:+81807867 None:intergenic
GCTATGGAGGCCATGATCAG+AGG 0.630260 8_1:-81806892 Msa1219060:CDS
AACAGATGGTAAGAAGGGCG+AGG 0.630415 8_1:+81804196 None:intergenic
TGTTTATGCAGCTATGATCG+AGG 0.630998 8_1:-81804429 Msa1219060:intron
CCTCCATAATCACCGGCCCA+GGG 0.633146 8_1:+81805609 None:intergenic
ATCAATGGCTAAGATCAAAG+CGG 0.634257 8_1:+81803053 None:intergenic
TTGAGACTCACCATCAGCAG+TGG 0.634362 8_1:+81806972 None:intergenic
CTAACTGCCACTAAACTCGC+CGG 0.637113 8_1:-81807844 Msa1219060:CDS
AGTAAGCATACAGAAGACAT+GGG 0.649848 8_1:+81805244 None:intergenic
AAATAACAGAAGAGAACACA+TGG 0.652388 8_1:-81808044 Msa1219060:five_prime_UTR
GCCTGCTGGAAAACACCTGT+AGG 0.655259 8_1:+81805158 None:intergenic
GCCATATCATCTGCACAACG+AGG 0.657293 8_1:-81806946 Msa1219060:CDS
GAAGAGGAGAAAGAGAAGAA+CGG 0.658092 8_1:+81807958 None:intergenic
TGGACATCCTGATATGCTAG+AGG 0.661739 8_1:-81805198 Msa1219060:CDS
ACTGCGACAAGTCCAAACTT+GGG 0.667272 8_1:+81804247 None:intergenic
GAGTACAGTGAATCTGGACG+TGG 0.667884 8_1:-81804599 Msa1219060:CDS
CCATATCATCTGCACAACGA+GGG 0.671149 8_1:-81806945 Msa1219060:CDS
TTGGAAGCTGGAAAAGACAG+TGG 0.672743 8_1:-81805586 Msa1219060:CDS
GAAAACACCTGTAGGAAGTG+CGG 0.675092 8_1:+81805166 None:intergenic
GAAATCGGCGAGAGTATCGG+AGG 0.675982 8_1:+81807726 None:intergenic
GCTCCAAGAGATATGGTCGG+CGG 0.699012 8_1:+81804462 None:intergenic
AATGCTCCAAGAGATATGGT+CGG 0.704069 8_1:+81804459 None:intergenic
GTAAGCATACAGAAGACATG+GGG 0.722281 8_1:+81805245 None:intergenic
GACTTGATGAACCCATACAG+CGG 0.730478 8_1:-81803220 Msa1219060:CDS
ATTGGCTTAAGTAATCCTGG+AGG 0.768810 8_1:+81803150 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTAAATAAGGAATTAT+TGG + chr8_1:81804487-81804506 None:intergenic 10.0%
!! GTCATTAATAAAATAGATTA+AGG - chr8_1:81803103-81803122 Msa1219060:CDS 15.0%
!! AATAAATTTGTAACAAATCA+AGG - chr8_1:81804138-81804157 Msa1219060:intron 15.0%
!!! CAAGATATCATTAAATATTT+TGG + chr8_1:81804453-81804472 None:intergenic 15.0%
!!! TAATATTTCCTTTGTAATTT+TGG - chr8_1:81806566-81806585 Msa1219060:intron 15.0%
!!! AATATTTCCTTTGTAATTTT+GGG - chr8_1:81806567-81806586 Msa1219060:intron 15.0%
!! TAATCCATTCTATTTATAAT+TGG + chr8_1:81806989-81807008 None:intergenic 15.0%
!!! TGAATACTATATTTTTCTTA+TGG - chr8_1:81807402-81807421 Msa1219060:intron 15.0%
!!! ATTTTTTTGCTTATTGAAAA+TGG - chr8_1:81807860-81807879 Msa1219060:CDS 15.0%
!! ATATCTAGAAATGAATGAAA+AGG - chr8_1:81802623-81802642 Msa1219060:three_prime_UTR 20.0%
!! ATCATAATAGAGATTATTAC+CGG + chr8_1:81803007-81803026 None:intergenic 20.0%
!! CTCTATTATGATTCATTAAT+TGG - chr8_1:81803015-81803034 Msa1219060:three_prime_UTR 20.0%
!! TTATCATATAATGTCATCTT+TGG - chr8_1:81803173-81803192 Msa1219060:CDS 20.0%
!! ATATGGTAGTTACAAATAAA+TGG - chr8_1:81804090-81804109 Msa1219060:intron 20.0%
!!! TTAAATATTTTGGATATGCT+AGG + chr8_1:81804443-81804462 None:intergenic 20.0%
!!! TAAAGTTTGAGATAAAACTT+TGG + chr8_1:81804900-81804919 None:intergenic 20.0%
!!! CATCATGTTATTTAGTTTTA+TGG - chr8_1:81805317-81805336 Msa1219060:intron 20.0%
!! CATTCTATTTATAATTGGTT+CGG + chr8_1:81806984-81807003 None:intergenic 20.0%
!!! ATACTATATTTTTCTTATGG+TGG - chr8_1:81807405-81807424 Msa1219060:intron 20.0%
!!! AGATTTCTTTTTCCTTTTTA+GGG + chr8_1:81807603-81807622 None:intergenic 20.0%
!!! ATATAAGTATTGCTGTTAAT+TGG + chr8_1:81808112-81808131 None:intergenic 20.0%
! TCTTTAAATTATGTCTCACT+TGG + chr8_1:81802576-81802595 None:intergenic 25.0%
!! TTTTTGCAGAAGAAGAAAAT+GGG - chr8_1:81803578-81803597 Msa1219060:intron 25.0%
! TGATTCTGATTGATTGTATT+AGG + chr8_1:81804119-81804138 None:intergenic 25.0%
! ATTCAACAACATATCACTTA+TGG + chr8_1:81804290-81804309 None:intergenic 25.0%
! TCTATCAGGCATAAATAAAT+TGG + chr8_1:81804323-81804342 None:intergenic 25.0%
! TAGCTTTCTTAAACTGAAAA+TGG - chr8_1:81804525-81804544 Msa1219060:CDS 25.0%
!! AAAATTAATGCCTGATTTTC+AGG - chr8_1:81804635-81804654 Msa1219060:CDS 25.0%
!! AAATTAATGCCTGATTTTCA+GGG - chr8_1:81804636-81804655 Msa1219060:CDS 25.0%
!! TTTGACTTACAGATTCTTTA+AGG + chr8_1:81804786-81804805 None:intergenic 25.0%
! TAACTAATCATCATACAGAA+AGG + chr8_1:81804815-81804834 None:intergenic 25.0%
! CATAGTTTAGCATATATTAG+TGG - chr8_1:81804845-81804864 Msa1219060:CDS 25.0%
!!! CTATAAGTGGATTATCAATA+GGG - chr8_1:81805015-81805034 Msa1219060:intron 25.0%
!! ATTATTTCATGGATTTTACC+AGG - chr8_1:81805137-81805156 Msa1219060:CDS 25.0%
! TATCAGATTTAGTAGACTAT+TGG - chr8_1:81805417-81805436 Msa1219060:intron 25.0%
! ATCAGATTTAGTAGACTATT+GGG - chr8_1:81805418-81805437 Msa1219060:intron 25.0%
! AACTCATCAAATCAAATAGT+TGG - chr8_1:81805811-81805830 Msa1219060:intron 25.0%
! TTTATAGGCGTTAACTATTA+CGG - chr8_1:81805952-81805971 Msa1219060:CDS 25.0%
!! CATTTTCAGCAATAATGAAA+GGG + chr8_1:81806193-81806212 None:intergenic 25.0%
!! TACAAACTTTAGAAAACAGA+TGG + chr8_1:81806521-81806540 None:intergenic 25.0%
!!! ATTTTGGGTGACATTTTTAA+TGG - chr8_1:81806582-81806601 Msa1219060:intron 25.0%
! AAAAATGGTTTAATGTTAGC+AGG - chr8_1:81806727-81806746 Msa1219060:intron 25.0%
! CGAACCAATTATAAATAGAA+TGG - chr8_1:81806982-81807001 Msa1219060:CDS 25.0%
! GCAACTTATAAAATTAAGGT+TGG + chr8_1:81807021-81807040 None:intergenic 25.0%
!! ACCTTAATTTTATAAGTTGC+AGG - chr8_1:81807021-81807040 Msa1219060:CDS 25.0%
! ACCTGCAACTTATAAAATTA+AGG + chr8_1:81807025-81807044 None:intergenic 25.0%
!! AATTTTATAAGTTGCAGGTA+AGG - chr8_1:81807026-81807045 Msa1219060:intron 25.0%
!! TCTAATTTTGTTAGCTAAGT+GGG + chr8_1:81807325-81807344 None:intergenic 25.0%
!! TTCTAATTTTGTTAGCTAAG+TGG + chr8_1:81807326-81807345 None:intergenic 25.0%
! GAATAATGAATCTTGAGAAT+TGG + chr8_1:81807571-81807590 None:intergenic 25.0%
!! GAGATTTCTTTTTCCTTTTT+AGG + chr8_1:81807604-81807623 None:intergenic 25.0%
! AAGGAAAAAGAAATCTCAAA+AGG - chr8_1:81807607-81807626 Msa1219060:intron 25.0%
! GAGATTTGATAAGTTATCAA+TGG + chr8_1:81807665-81807684 None:intergenic 25.0%
!! TTTTGGCATATCATTAATAC+AGG + chr8_1:81808059-81808078 None:intergenic 25.0%
! TGTATTAATGATATGCCAAA+AGG - chr8_1:81808058-81808077 Msa1219060:five_prime_UTR 25.0%
TCTAGAAATGAATGAAAAGG+AGG - chr8_1:81802626-81802645 Msa1219060:three_prime_UTR 30.0%
CTAGAAATGAATGAAAAGGA+GGG - chr8_1:81802627-81802646 Msa1219060:three_prime_UTR 30.0%
AAATAACAGAAGAGAACACA+TGG - chr8_1:81802656-81802675 Msa1219060:three_prime_UTR 30.0%
ATTACCGGTAATGTTGAAAT+CGG + chr8_1:81802992-81803011 None:intergenic 30.0%
AAATAGATTAAGGCTCTCTT+TGG - chr8_1:81803113-81803132 Msa1219060:CDS 30.0%
! TGTTTGGATTGACTTATTTG+AGG + chr8_1:81803399-81803418 None:intergenic 30.0%
ATAAACACTTACGACATGTT+TGG + chr8_1:81803415-81803434 None:intergenic 30.0%
! ACAACATATGGACATGTTTT+CGG + chr8_1:81803472-81803491 None:intergenic 30.0%
GAACTTATGGAAACAACATA+TGG + chr8_1:81803484-81803503 None:intergenic 30.0%
ACAAACAAATAAGCCATGTT+TGG + chr8_1:81803559-81803578 None:intergenic 30.0%
! GTTTTTGCAGAAGAAGAAAA+TGG - chr8_1:81803577-81803596 Msa1219060:intron 30.0%
!! GAAGAAAATGGGTTTTTCTT+TGG - chr8_1:81803589-81803608 Msa1219060:intron 30.0%
ACTTCAAAATCCAATGTTGA+CGG + chr8_1:81803958-81803977 None:intergenic 30.0%
!!! ACATTGGATTTTGAAGTGAA+AGG - chr8_1:81803961-81803980 Msa1219060:intron 30.0%
!!! CATTGGATTTTGAAGTGAAA+GGG - chr8_1:81803962-81803981 Msa1219060:intron 30.0%
GTAAGCTAATATTGTTGTCA+AGG - chr8_1:81804001-81804020 Msa1219060:CDS 30.0%
TAGAATCTTCTGTAAAGTCT+TGG + chr8_1:81804060-81804079 None:intergenic 30.0%
TGTAACTACCATATCTTGTA+TGG + chr8_1:81804084-81804103 None:intergenic 30.0%
! TTTGGTTTCCATAATCAAGT+TGG + chr8_1:81804214-81804233 None:intergenic 30.0%
ACCAAAGTCTACAAATGTTT+AGG - chr8_1:81804228-81804247 Msa1219060:CDS 30.0%
ACCTAAACATTTGTAGACTT+TGG + chr8_1:81804232-81804251 None:intergenic 30.0%
TACAAATGTTTAGGTGTATG+AGG - chr8_1:81804237-81804256 Msa1219060:CDS 30.0%
ATCGTATTTGAATTGCACTT+TGG - chr8_1:81804362-81804381 Msa1219060:intron 30.0%
TCCTGATACAGAACTAAAAT+TGG - chr8_1:81804684-81804703 Msa1219060:intron 30.0%
! TGTATGATGATTAGTTATCG+TGG - chr8_1:81804818-81804837 Msa1219060:CDS 30.0%
GTTTAGCATATATTAGTGGA+TGG - chr8_1:81804849-81804868 Msa1219060:CDS 30.0%
ACTTATGTAAGCAATTCACT+TGG - chr8_1:81804956-81804975 Msa1219060:intron 30.0%
!! GCTATAAGTGGATTATCAAT+AGG - chr8_1:81805014-81805033 Msa1219060:intron 30.0%
!! AAAGACAGTGGATTATTTCA+TGG - chr8_1:81805126-81805145 Msa1219060:CDS 30.0%
ATACAAACAAATGCCACTAA+AGG + chr8_1:81805171-81805190 None:intergenic 30.0%
CTAGTTGAACTAGAATGATA+TGG + chr8_1:81805668-81805687 None:intergenic 30.0%
TGGATATTTCATCGATGAAT+GGG + chr8_1:81805921-81805940 None:intergenic 30.0%
TTGGATATTTCATCGATGAA+TGG + chr8_1:81805922-81805941 None:intergenic 30.0%
CGATGAAATATCCAAAAAGA+TGG - chr8_1:81805927-81805946 Msa1219060:CDS 30.0%
! TCCAAAAAGATGGACTTTAT+AGG - chr8_1:81805937-81805956 Msa1219060:CDS 30.0%
ACAATTCTAACATGTACATC+AGG - chr8_1:81806037-81806056 Msa1219060:CDS 30.0%
TTAGATGCTTGTATCTTTCA+TGG + chr8_1:81806166-81806185 None:intergenic 30.0%
! CCATTTTCAGCAATAATGAA+AGG + chr8_1:81806194-81806213 None:intergenic 30.0%
CCTTTCATTATTGCTGAAAA+TGG - chr8_1:81806191-81806210 Msa1219060:intron 30.0%
TAGAAAACAGATGGTAAGAA+GGG + chr8_1:81806512-81806531 None:intergenic 30.0%
TTAGAAAACAGATGGTAAGA+AGG + chr8_1:81806513-81806532 None:intergenic 30.0%
AATGTCACCCAAAATTACAA+AGG + chr8_1:81806577-81806596 None:intergenic 30.0%
! AGAAGACAAGACCATTTTAT+CGG - chr8_1:81806695-81806714 Msa1219060:intron 30.0%
!! AATGCGTTTCTATTGATTTG+TGG - chr8_1:81806789-81806808 Msa1219060:intron 30.0%
!! ATGCGTTTCTATTGATTTGT+GGG - chr8_1:81806790-81806809 Msa1219060:intron 30.0%
TCTAGTAATATGTTGGCATA+TGG + chr8_1:81806902-81806921 None:intergenic 30.0%
CGGTTTATCTAGTAATATGT+TGG + chr8_1:81806909-81806928 None:intergenic 30.0%
AACACATAACTTCCAAAGAA+TGG - chr8_1:81807269-81807288 Msa1219060:intron 30.0%
!!! AATATTGCTCTAGCTTTTAC+AGG - chr8_1:81807344-81807363 Msa1219060:intron 30.0%
TTCATGTTCAATTTGCCTAT+TGG + chr8_1:81807386-81807405 None:intergenic 30.0%
CTTATATAGAAAGAGATTGG+CGG - chr8_1:81807504-81807523 Msa1219060:intron 30.0%
GTATTACTTTGAGTAGTAAG+AGG + chr8_1:81807694-81807713 None:intergenic 30.0%
! ACTCGATGGAATTTTACATA+TGG - chr8_1:81807786-81807805 Msa1219060:CDS 30.0%
AAATGGAAGAGAATTGCATT+CGG - chr8_1:81807877-81807896 Msa1219060:exon 30.0%
ATCATCTCATCTTAGAACAG+TGG - chr8_1:81802701-81802720 Msa1219060:three_prime_UTR 35.0%
TCGTAGTTTCCAGAACTTAA+CGG - chr8_1:81802766-81802785 Msa1219060:three_prime_UTR 35.0%
ATACTCATACCGTTAAGTTC+TGG + chr8_1:81802778-81802797 None:intergenic 35.0%
!! TTCATCATAAGAAGCGCTTA+TGG - chr8_1:81803218-81803237 Msa1219060:CDS 35.0%
! TAACGATCTTTGAGAGCTTA+TGG - chr8_1:81803439-81803458 Msa1219060:intron 35.0%
! TGAAACTCTGGAAGAACTTA+TGG + chr8_1:81803497-81803516 None:intergenic 35.0%
CATAAGCATTTGTGAAACTC+TGG + chr8_1:81803509-81803528 None:intergenic 35.0%
CAGAAAGTAGATGCTTTGAT+GGG - chr8_1:81803700-81803719 Msa1219060:intron 35.0%
TTTCTCAAATCCTCTGATCA+TGG + chr8_1:81803821-81803840 None:intergenic 35.0%
CAGAGGATTTGAGAAATACA+TGG - chr8_1:81803825-81803844 Msa1219060:intron 35.0%
GAGAAATACATGGAAGTAGA+TGG - chr8_1:81803835-81803854 Msa1219060:intron 35.0%
ACATTCCTAATGTAACTGCT+TGG - chr8_1:81803878-81803897 Msa1219060:intron 35.0%
TTATGCCAAGCAGTTACATT+AGG + chr8_1:81803886-81803905 None:intergenic 35.0%
GATTCTAGCCATACAAGATA+TGG - chr8_1:81804073-81804092 Msa1219060:CDS 35.0%
GGAGTAAACCAACTTGATTA+TGG - chr8_1:81804203-81804222 Msa1219060:CDS 35.0%
AAGCTTAGTATGAGAAGACT+AGG - chr8_1:81804396-81804415 Msa1219060:intron 35.0%
GAAAAGTTACTCTTCGTCAT+AGG - chr8_1:81804547-81804566 Msa1219060:CDS 35.0%
!!! GCCAATTTTAGTTCTGTATC+AGG + chr8_1:81804688-81804707 None:intergenic 35.0%
TACAGAACTAAAATTGGCCA+AGG - chr8_1:81804690-81804709 Msa1219060:intron 35.0%
!!! TGGTGTTACTGTTTTTCGTA+TGG - chr8_1:81804717-81804736 Msa1219060:intron 35.0%
!!! GGTGTTACTGTTTTTCGTAT+GGG - chr8_1:81804718-81804737 Msa1219060:intron 35.0%
! TTTTTCGTATGGGAATTGAC+TGG - chr8_1:81804728-81804747 Msa1219060:intron 35.0%
!! GATTCTTTAAGGCTGTTTAC+TGG + chr8_1:81804775-81804794 None:intergenic 35.0%
ATCAATAGGGTTCGATCATA+TGG - chr8_1:81805028-81805047 Msa1219060:intron 35.0%
GATTCGCAAATATGCTACAT+GGG + chr8_1:81805280-81805299 None:intergenic 35.0%
AGATTCGCAAATATGCTACA+TGG + chr8_1:81805281-81805300 None:intergenic 35.0%
ACATGTTTCTCAATCAATGC+AGG - chr8_1:81805378-81805397 Msa1219060:intron 35.0%
AGTAAGCATACAGAAGACAT+GGG + chr8_1:81805459-81805478 None:intergenic 35.0%
AAGTAAGCATACAGAAGACA+TGG + chr8_1:81805460-81805479 None:intergenic 35.0%
TGTATGCTTACTTACTGTTC+TGG - chr8_1:81805467-81805486 Msa1219060:intron 35.0%
GTCAGAGGTTTCAGAATTTA+TGG - chr8_1:81805632-81805651 Msa1219060:CDS 35.0%
TCAGACTGCTAAATGAGAAA+GGG + chr8_1:81805709-81805728 None:intergenic 35.0%
TTCAGACTGCTAAATGAGAA+AGG + chr8_1:81805710-81805729 None:intergenic 35.0%
GCAATATCAAACAGACCATA+GGG + chr8_1:81805865-81805884 None:intergenic 35.0%
AGCAATATCAAACAGACCAT+AGG + chr8_1:81805866-81805885 None:intergenic 35.0%
CAATGAATTAGCCAGTGAAA+CGG + chr8_1:81805890-81805909 None:intergenic 35.0%
! GCCTATAAAGTCCATCTTTT+TGG + chr8_1:81805941-81805960 None:intergenic 35.0%
TAGGATCGAAAAATCAAACC+TGG + chr8_1:81805978-81805997 None:intergenic 35.0%
ATCGTACAGAATGCATTGTT+AGG + chr8_1:81805997-81806016 None:intergenic 35.0%
AATGATGAGTACAGTGAATC+TGG - chr8_1:81806095-81806114 Msa1219060:intron 35.0%
AGTAAATGCTCCAAGAGATA+TGG + chr8_1:81806248-81806267 None:intergenic 35.0%
CTTCTTGTAACTGTTCTACA+GGG - chr8_1:81806363-81806382 Msa1219060:intron 35.0%
TATCAGAAATAGTCCAGAAG+AGG + chr8_1:81806407-81806426 None:intergenic 35.0%
!! TCTGGACTATTTCTGATAAC+TGG - chr8_1:81806409-81806428 Msa1219060:intron 35.0%
!! CTGGACTATTTCTGATAACT+GGG - chr8_1:81806410-81806429 Msa1219060:intron 35.0%
! TATTTCTGATAACTGGGAGT+GGG - chr8_1:81806416-81806435 Msa1219060:intron 35.0%
ATCATCGTGTGTAACTTTAC+CGG + chr8_1:81806632-81806651 None:intergenic 35.0%
TCTTGTCTTCTTCTCTTTAG+CGG + chr8_1:81806686-81806705 None:intergenic 35.0%
! GAAGACAAGACCATTTTATC+GGG - chr8_1:81806696-81806715 Msa1219060:intron 35.0%
!! TGCGTTTCTATTGATTTGTG+GGG - chr8_1:81806791-81806810 Msa1219060:intron 35.0%
TATGCTCATATCAAGCATAG+AGG + chr8_1:81806831-81806850 None:intergenic 35.0%
CTGTCAAAGGTAGTAACTAT+CGG + chr8_1:81806929-81806948 None:intergenic 35.0%
CTAATACAGGCTTGATTGTT+TGG - chr8_1:81807087-81807106 Msa1219060:intron 35.0%
CTTACCAAACAAACTCCAAT+AGG - chr8_1:81807368-81807387 Msa1219060:intron 35.0%
! TTTGCCTATTGGAGTTTGTT+TGG + chr8_1:81807375-81807394 None:intergenic 35.0%
! GGCCTTATATAGAAAGAGAT+TGG - chr8_1:81807501-81807520 Msa1219060:intron 35.0%
CGCCAATCTCTTTCTATATA+AGG + chr8_1:81807506-81807525 None:intergenic 35.0%
! AGAATTGGCTTAAGTAATCC+TGG + chr8_1:81807556-81807575 None:intergenic 35.0%
TTCAACGATTCTCCCTAAAA+AGG - chr8_1:81807588-81807607 Msa1219060:intron 35.0%
ATCAATGGCTAAGATCAAAG+CGG + chr8_1:81807650-81807669 None:intergenic 35.0%
AATGGAAGAGAATTGCATTC+GGG - chr8_1:81807878-81807897 Msa1219060:exon 35.0%
! GAAACAAGTAACAGTCCTTT+TGG + chr8_1:81808076-81808095 None:intergenic 35.0%
! AAGGACTGTTACTTGTTTCA+AGG - chr8_1:81808077-81808096 Msa1219060:five_prime_UTR 35.0%
GAAGAGGAGAAAGAGAAGAA+CGG + chr8_1:81802745-81802764 None:intergenic 40.0%
! TTCTGGAAACTACGAAGAAG+AGG + chr8_1:81802761-81802780 None:intergenic 40.0%
TGAAACTATCGTCATGGTAG+TGG + chr8_1:81802830-81802849 None:intergenic 40.0%
GAAGAGTGAAACTATCGTCA+TGG + chr8_1:81802836-81802855 None:intergenic 40.0%
AGAGAAGGAAAATGCATTGG+CGG + chr8_1:81802905-81802924 None:intergenic 40.0%
ACGAGAGAAGGAAAATGCAT+TGG + chr8_1:81802908-81802927 None:intergenic 40.0%
TTTGTTGCGAAAACGAGAGA+AGG + chr8_1:81802920-81802939 None:intergenic 40.0%
TATCGGAGGATTCATCGATA+GGG + chr8_1:81802963-81802982 None:intergenic 40.0%
GTCTCACAAGTGCTTATACA+AGG - chr8_1:81803367-81803386 Msa1219060:intron 40.0%
CGATTGAGACAATCCAAACA+TGG - chr8_1:81803543-81803562 Msa1219060:intron 40.0%
GCAGAAAGTAGATGCTTTGA+TGG - chr8_1:81803699-81803718 Msa1219060:intron 40.0%
GGGTAACAAGAAGTCTCTTA+AGG - chr8_1:81803783-81803802 Msa1219060:intron 40.0%
GAAGTCTCTTAAGGTAGCTA+TGG - chr8_1:81803792-81803811 Msa1219060:intron 40.0%
ATACATGGAAGTAGATGGAC+AGG - chr8_1:81803840-81803859 Msa1219060:intron 40.0%
ACAAAGCAAGTGAGAGCTTA+CGG + chr8_1:81803919-81803938 None:intergenic 40.0%
! ATGTCATTTGCCGTCAACAT+TGG - chr8_1:81803945-81803964 Msa1219060:intron 40.0%
!!! GGATTTTGAAGTGAAAGGGA+TGG - chr8_1:81803966-81803985 Msa1219060:intron 40.0%
!!! TTTTGAAGTGAAAGGGATGG+TGG - chr8_1:81803969-81803988 Msa1219060:intron 40.0%
! TTTGAAGTGAAAGGGATGGT+GGG - chr8_1:81803970-81803989 Msa1219060:intron 40.0%
ACAGTGACTTGAGTTTAAGG+GGG + chr8_1:81804183-81804202 None:intergenic 40.0%
CACAGTGACTTGAGTTTAAG+GGG + chr8_1:81804184-81804203 None:intergenic 40.0%
CCACAGTGACTTGAGTTTAA+GGG + chr8_1:81804185-81804204 None:intergenic 40.0%
TCCACAGTGACTTGAGTTTA+AGG + chr8_1:81804186-81804205 None:intergenic 40.0%
ATGCCTGATAGATACACTCA+TGG - chr8_1:81804331-81804350 Msa1219060:intron 40.0%
CTTCCATGAGTGTATCTATC+AGG + chr8_1:81804337-81804356 None:intergenic 40.0%
!! TTAATGCCTGATTTTCAGGG+AGG - chr8_1:81804639-81804658 Msa1219060:CDS 40.0%
!! TTTTCAGGGAGGAGAGATTA+AGG - chr8_1:81804650-81804669 Msa1219060:intron 40.0%
CTAAAATTGGCCAAGGATAC+TGG - chr8_1:81804697-81804716 Msa1219060:intron 40.0%
AACAGTAACACCAGTATCCT+TGG + chr8_1:81804710-81804729 None:intergenic 40.0%
! ATATTAGTGGATGGAGCTCA+TGG - chr8_1:81804858-81804877 Msa1219060:CDS 40.0%
! ATCTCTTTTGCCAGATGCAT+TGG + chr8_1:81804934-81804953 None:intergenic 40.0%
TTCACTTGGCGTTCTTTCTT+AGG - chr8_1:81804970-81804989 Msa1219060:intron 40.0%
TTAGGTCAACTATGCTGCAT+TGG - chr8_1:81804988-81805007 Msa1219060:intron 40.0%
GGTTCGATCATATGGAATGA+AGG - chr8_1:81805036-81805055 Msa1219060:intron 40.0%
CCACTAAAGGAAAAACTACC+TGG + chr8_1:81805158-81805177 None:intergenic 40.0%
! CCAGGTAGTTTTTCCTTTAG+TGG - chr8_1:81805155-81805174 Msa1219060:CDS 40.0%
AAAATTGAGTCATCCTCAGC+AGG + chr8_1:81805208-81805227 None:intergenic 40.0%
TTGCGAATCTCTCTTGAAAC+TGG - chr8_1:81805291-81805310 Msa1219060:CDS 40.0%
GTAAGCATACAGAAGACATG+GGG + chr8_1:81805458-81805477 None:intergenic 40.0%
!! TTACTTACTGTTCTGGAACC+TGG - chr8_1:81805474-81805493 Msa1219060:intron 40.0%
TGCAACAGATATCCAATGCA+TGG + chr8_1:81805567-81805586 None:intergenic 40.0%
GATATCTGTTGCACACTCAA+AGG - chr8_1:81805574-81805593 Msa1219060:CDS 40.0%
ATGATTACATCCACGAACTC+AGG - chr8_1:81805600-81805619 Msa1219060:CDS 40.0%
ACTGCTAAATGAGAAAGGGT+GGG + chr8_1:81805705-81805724 None:intergenic 40.0%
TGTACATCAGGAAGCGATTT+CGG - chr8_1:81806049-81806068 Msa1219060:intron 40.0%
! CATCATTTTCCACAAGCTTC+AGG + chr8_1:81806082-81806101 None:intergenic 40.0%
AACATGCGATATAAGCCATC+AGG + chr8_1:81806134-81806153 None:intergenic 40.0%
AATGCTCCAAGAGATATGGT+CGG + chr8_1:81806244-81806263 None:intergenic 40.0%
TGTTTATGCAGCTATGATCG+AGG - chr8_1:81806271-81806290 Msa1219060:intron 40.0%
CCTGTAGAACAGTTACAAGA+AGG + chr8_1:81806365-81806384 None:intergenic 40.0%
CCTTCTTGTAACTGTTCTAC+AGG - chr8_1:81806362-81806381 Msa1219060:intron 40.0%
!! CTATTTCTGATAACTGGGAG+TGG - chr8_1:81806415-81806434 Msa1219060:intron 40.0%
ACCGAGCAAATAATCTTGCA+CGG - chr8_1:81806478-81806497 Msa1219060:intron 40.0%
TCCGTGCAAGATTATTTGCT+CGG + chr8_1:81806482-81806501 None:intergenic 40.0%
TTTAATGGCCTCTTGATTGC+AGG - chr8_1:81806597-81806616 Msa1219060:intron 40.0%
ACTTACAACCTGCAATCAAG+AGG + chr8_1:81806608-81806627 None:intergenic 40.0%
TGATTGCAGGTTGTAAGTAC+CGG - chr8_1:81806610-81806629 Msa1219060:intron 40.0%
CATTATGCAACTGCTGTCAA+AGG + chr8_1:81806942-81806961 None:intergenic 40.0%
ATAAGTTGCAGGTAAGGTTC+AGG - chr8_1:81807032-81807051 Msa1219060:intron 40.0%
TAAGTTGCAGGTAAGGTTCA+GGG - chr8_1:81807033-81807052 Msa1219060:intron 40.0%
! AGAGAGTGCACAACTAATAC+AGG - chr8_1:81807074-81807093 Msa1219060:intron 40.0%
AACCTGCGCTAAGACAAATT+TGG + chr8_1:81807197-81807216 None:intergenic 40.0%
AATTTGTCTTAGCGCAGGTT+TGG - chr8_1:81807197-81807216 Msa1219060:intron 40.0%
TTCAGTTTCGCACCATTCTT+TGG + chr8_1:81807284-81807303 None:intergenic 40.0%
TAAATGCATGACAAGTCTCC+TGG - chr8_1:81807441-81807460 Msa1219060:intron 40.0%
TCTATATAAGGCCGCTGTAT+GGG + chr8_1:81807494-81807513 None:intergenic 40.0%
TTCTATATAAGGCCGCTGTA+TGG + chr8_1:81807495-81807514 None:intergenic 40.0%
ATAGAAAGAGATTGGCGGTT+TGG - chr8_1:81807509-81807528 Msa1219060:intron 40.0%
! ATTGGCTTAAGTAATCCTGG+AGG + chr8_1:81807553-81807572 None:intergenic 40.0%
TCAATGGCTAAGATCAAAGC+GGG + chr8_1:81807649-81807668 None:intergenic 40.0%
TACTAGAACGCTGAGTCATT+TGG + chr8_1:81807741-81807760 None:intergenic 40.0%
!! CGAGTTGATCATTCTTGTGA+GGG + chr8_1:81807771-81807790 None:intergenic 40.0%
!! TCGAGTTGATCATTCTTGTG+AGG + chr8_1:81807772-81807791 None:intergenic 40.0%
CACAAGAATGATCAACTCGA+TGG - chr8_1:81807772-81807791 Msa1219060:CDS 40.0%
TACATATGGATCTTCAGCAC+AGG - chr8_1:81807800-81807819 Msa1219060:CDS 40.0%
TCCAGAATGAATCTCTGTAG+CGG + chr8_1:81807839-81807858 None:intergenic 40.0%
CGGGACTGCATTATATATCA+AGG - chr8_1:81807897-81807916 Msa1219060:five_prime_UTR 40.0%
AGTGAGAGTGACTAAAGCTC+CGG + chr8_1:81802878-81802897 None:intergenic 45.0%
CATCGATAGGGGAAGTGAAA+CGG + chr8_1:81802951-81802970 None:intergenic 45.0%
ATCGGAGGATTCATCGATAG+GGG + chr8_1:81802962-81802981 None:intergenic 45.0%
GTATCGGAGGATTCATCGAT+AGG + chr8_1:81802964-81802983 None:intergenic 45.0%
! GTTGAAATCGGCGAGAGTAT+CGG + chr8_1:81802980-81802999 None:intergenic 45.0%
!! CTCGCCGATTTCAACATTAC+CGG - chr8_1:81802985-81803004 Msa1219060:three_prime_UTR 45.0%
ATCTACTTTCTGCTCAGCAC+CGG + chr8_1:81803692-81803711 None:intergenic 45.0%
CCATATCATCTGCACAACGA+GGG - chr8_1:81803755-81803774 Msa1219060:intron 45.0%
GTCTCTTAAGGTAGCTATGG+AGG - chr8_1:81803795-81803814 Msa1219060:intron 45.0%
ATGGAAGTAGATGGACAGGA+AGG - chr8_1:81803844-81803863 Msa1219060:intron 45.0%
CAGTGACTTGAGTTTAAGGG+GGG + chr8_1:81804182-81804201 None:intergenic 45.0%
CCCTTAAACTCAAGTCACTG+TGG - chr8_1:81804182-81804201 Msa1219060:intron 45.0%
TGAGGATGCCTATAGAGAGA+AGG - chr8_1:81804255-81804274 Msa1219060:CDS 45.0%
TGCCTATAGAGAGAAGGCAA+TGG - chr8_1:81804261-81804280 Msa1219060:CDS 45.0%
GTCCATTGCCTTCTCTCTAT+AGG + chr8_1:81804266-81804285 None:intergenic 45.0%
ATCTCTCCTCCCTGAAAATC+AGG + chr8_1:81804648-81804667 None:intergenic 45.0%
! GGGAGGAGAGATTAAGGTTT+TGG - chr8_1:81804656-81804675 Msa1219060:intron 45.0%
TGACCATTGACCAATGCATC+TGG - chr8_1:81804921-81804940 Msa1219060:intron 45.0%
! TTGCCAGATGCATTGGTCAA+TGG + chr8_1:81804927-81804946 None:intergenic 45.0%
CTTCCAACCTCCATAATCAC+CGG + chr8_1:81805101-81805120 None:intergenic 45.0%
TGATTATGGAGGTTGGAAGC+TGG - chr8_1:81805102-81805121 Msa1219060:CDS 45.0%
TTGGAAGCTGGAAAAGACAG+TGG - chr8_1:81805114-81805133 Msa1219060:CDS 45.0%
TGGACATCCTGATATGCTAG+AGG - chr8_1:81805502-81805521 Msa1219060:intron 45.0%
GAAAACACCTGTAGGAAGTG+CGG + chr8_1:81805537-81805556 None:intergenic 45.0%
CACATATTCACCTGAGTTCG+TGG + chr8_1:81805613-81805632 None:intergenic 45.0%
CTCAGGTGAATATGTGTCAG+AGG - chr8_1:81805617-81805636 Msa1219060:CDS 45.0%
CTAAATGAGAAAGGGTGGGA+AGG + chr8_1:81805701-81805720 None:intergenic 45.0%
GACTGCTAAATGAGAAAGGG+TGG + chr8_1:81805706-81805725 None:intergenic 45.0%
TTGAAGCTGACTGCACTACT+TGG - chr8_1:81805733-81805752 Msa1219060:intron 45.0%
! TGATATTGCTGCCGTTTCAC+TGG - chr8_1:81805876-81805895 Msa1219060:intron 45.0%
GTACATCAGGAAGCGATTTC+GGG - chr8_1:81806050-81806069 Msa1219060:intron 45.0%
GATGGATATGGTCCCAAGTT+TGG - chr8_1:81806441-81806460 Msa1219060:intron 45.0%
ACTGCGACAAGTCCAAACTT+GGG + chr8_1:81806456-81806475 None:intergenic 45.0%
AACTGCGACAAGTCCAAACT+TGG + chr8_1:81806457-81806476 None:intergenic 45.0%
! ACGATGATCGTGATAACGCT+TGG - chr8_1:81806644-81806663 Msa1219060:intron 45.0%
! AAGACCATTTTATCGGGCTG+TGG - chr8_1:81806702-81806721 Msa1219060:intron 45.0%
TTGTCCACAGCCCGATAAAA+TGG + chr8_1:81806709-81806728 None:intergenic 45.0%
TATCGGGCTGTGGACAAAAA+TGG - chr8_1:81806712-81806731 Msa1219060:intron 45.0%
CTGCGCTAAGACAAATTTGG+TGG + chr8_1:81807194-81807213 None:intergenic 45.0%
CACCAAATTTGTCTTAGCGC+AGG - chr8_1:81807192-81807211 Msa1219060:intron 45.0%
GACTTGATGAACCCATACAG+CGG - chr8_1:81807480-81807499 Msa1219060:intron 45.0%
!! GCGGTTTGGTCATTATGAGA+TGG - chr8_1:81807523-81807542 Msa1219060:intron 45.0%
GGATCTTCAGCACAGGATTT+AGG - chr8_1:81807807-81807826 Msa1219060:CDS 45.0%
TCCGCTACAGAGATTCATTC+TGG - chr8_1:81807835-81807854 Msa1219060:CDS 45.0%
TCTGAACAATGCAGCAAAGC+TGG + chr8_1:81807939-81807958 None:intergenic 45.0%
!! TATCAAAAAAAATTTAAATA+AGG + chr8_1:81804496-81804515 None:intergenic 5.0%
CTAACTGCCACTAAACTCGC+CGG - chr8_1:81802856-81802875 Msa1219060:three_prime_UTR 50.0%
TAAAGCTCCGGCGAGTTTAG+TGG + chr8_1:81802866-81802885 None:intergenic 50.0%
!! AGGACAGGCTTGATGATGCT+TGG - chr8_1:81803638-81803657 Msa1219060:intron 50.0%
!! GCTGAACAAGAGAGTGTTGC+CGG - chr8_1:81803670-81803689 Msa1219060:intron 50.0%
TTGAGACTCACCATCAGCAG+TGG + chr8_1:81803731-81803750 None:intergenic 50.0%
GCCATATCATCTGCACAACG+AGG - chr8_1:81803754-81803773 Msa1219060:intron 50.0%
CCCTCGTTGTGCAGATGATA+TGG + chr8_1:81803758-81803777 None:intergenic 50.0%
ATCTGCACAACGAGGGCTTA+AGG - chr8_1:81803762-81803781 Msa1219060:intron 50.0%
TCTGCACAACGAGGGCTTAA+GGG - chr8_1:81803763-81803782 Msa1219060:intron 50.0%
CAAGTGAGAGCTTACGGATG+TGG + chr8_1:81803913-81803932 None:intergenic 50.0%
ACACACACAGACACACACAG+AGG + chr8_1:81804582-81804601 None:intergenic 50.0%
!! AGGCTGTTTACTGGCTCATG+AGG + chr8_1:81804766-81804785 None:intergenic 50.0%
! CTGCATTGGAGCGCTATAAG+TGG - chr8_1:81805002-81805021 Msa1219060:intron 50.0%
TTCATCACTCACTTCCACCC+TGG - chr8_1:81805074-81805093 Msa1219060:intron 50.0%
TCATCACTCACTTCCACCCT+GGG - chr8_1:81805075-81805094 Msa1219060:intron 50.0%
AGCATATCAGGATGTCCACC+AGG + chr8_1:81805500-81805519 None:intergenic 50.0%
GTAGCAGCCTCTAGCATATC+AGG + chr8_1:81805512-81805531 None:intergenic 50.0%
! TCCTACAGGTGTTTTCCAGC+AGG - chr8_1:81805541-81805560 Msa1219060:intron 50.0%
! TTTTCCAGCAGGCCATGCAT+TGG - chr8_1:81805552-81805571 Msa1219060:intron 50.0%
ATATCCAATGCATGGCCTGC+TGG + chr8_1:81805559-81805578 None:intergenic 50.0%
AATGAGAAAGGGTGGGAAGG+CGG + chr8_1:81805698-81805717 None:intergenic 50.0%
!! GTGTCGTTTATGCGACCCTA+TGG - chr8_1:81805847-81805866 Msa1219060:intron 50.0%
AGGCGTTAACTATTACGGCC+AGG - chr8_1:81805957-81805976 Msa1219060:CDS 50.0%
TTGTCGCGTGAGTACATGTC+TGG + chr8_1:81806021-81806040 None:intergenic 50.0%
GAGTACAGTGAATCTGGACG+TGG - chr8_1:81806101-81806120 Msa1219060:intron 50.0%
GGACGTGGAGTATATCCTGA+TGG - chr8_1:81806116-81806135 Msa1219060:intron 50.0%
CAGAAGAGGTAACCAAGCAC+AGG + chr8_1:81806393-81806412 None:intergenic 50.0%
CTGTGCTTGGTTACCTCTTC+TGG - chr8_1:81806391-81806410 Msa1219060:intron 50.0%
AACAGATGGTAAGAAGGGCG+AGG + chr8_1:81806507-81806526 None:intergenic 50.0%
! AGGTTTGGTACTGCGTTACG+AGG - chr8_1:81807212-81807231 Msa1219060:intron 50.0%
! GGTTTGGTACTGCGTTACGA+GGG - chr8_1:81807213-81807232 Msa1219060:intron 50.0%
GCAGTGAACATGTTGTGCTG+TGG - chr8_1:81807235-81807254 Msa1219060:intron 50.0%
! ATGACAAGTCTCCTGGCTTG+TGG - chr8_1:81807448-81807467 Msa1219060:intron 50.0%
!! TCGTCATGGTAGTGGCGAGT+GGG + chr8_1:81802822-81802841 None:intergenic 55.0%
!! ATCGTCATGGTAGTGGCGAG+TGG + chr8_1:81802823-81802842 None:intergenic 55.0%
CGGCGAGTTTAGTGGCAGTT+AGG + chr8_1:81802858-81802877 None:intergenic 55.0%
!! GAAATCGGCGAGAGTATCGG+AGG + chr8_1:81802977-81802996 None:intergenic 55.0%
CTTTGGTCTAGCGACAGCAC+CGG - chr8_1:81803606-81803625 Msa1219060:intron 55.0%
AGCCTGTCCTCAACATGTGC+CGG + chr8_1:81803628-81803647 None:intergenic 55.0%
GCTATGGAGGCCATGATCAG+AGG - chr8_1:81803808-81803827 Msa1219060:intron 55.0%
ACAGACACACACAGAGGACG+CGG + chr8_1:81804576-81804595 None:intergenic 55.0%
!! TACTGTTCTGGAACCTGGCC+TGG - chr8_1:81805479-81805498 Msa1219060:intron 55.0%
GCTACTTCCGCACTTCCTAC+AGG - chr8_1:81805527-81805546 Msa1219060:intron 55.0%
GCCTGCTGGAAAACACCTGT+AGG + chr8_1:81805545-81805564 None:intergenic 55.0%
GATCCGCCGACCATATCTCT+TGG - chr8_1:81806235-81806254 Msa1219060:intron 55.0%
GCTCCAAGAGATATGGTCGG+CGG + chr8_1:81806241-81806260 None:intergenic 55.0%
!! GATAACTGGGAGTGGGCTGA+TGG - chr8_1:81806423-81806442 Msa1219060:intron 55.0%
!! TGGGAGTGGGCTGATGGATA+TGG - chr8_1:81806429-81806448 Msa1219060:intron 55.0%
!! GACAGCACCGGCACATGTTG+AGG - chr8_1:81803618-81803637 Msa1219060:intron 60.0%
CACCGGCACATGTTGAGGAC+AGG - chr8_1:81803623-81803642 Msa1219060:intron 60.0%
ATGGGCTCTGCCACTGCTGA+TGG - chr8_1:81803718-81803737 Msa1219060:intron 60.0%
CCTCCATAATCACCGGCCCA+GGG + chr8_1:81805094-81805113 None:intergenic 60.0%
ACCTCCATAATCACCGGCCC+AGG + chr8_1:81805095-81805114 None:intergenic 60.0%
GGGCCGGTGATTATGGAGGT+TGG - chr8_1:81805095-81805114 Msa1219060:intron 60.0%
CCTCAGCAGGCAGAGTTCGA+TGG + chr8_1:81805195-81805214 None:intergenic 60.0%
CCATCGAACTCTGCCTGCTG+AGG - chr8_1:81805192-81805211 Msa1219060:CDS 60.0%
!! TGTTCTGGAACCTGGCCTGG+TGG - chr8_1:81805482-81805501 Msa1219060:intron 60.0%
ATCAGGATGTCCACCAGGCC+AGG + chr8_1:81805495-81805514 None:intergenic 60.0%
! CAGGAAGCGATTTCGGGTGC+TGG - chr8_1:81806056-81806075 Msa1219060:intron 60.0%
CTACAGGGTGTGCCTGTGCT+TGG - chr8_1:81806378-81806397 Msa1219060:intron 60.0%
! GTCTCCTGGCTTGTGGTGAC+AGG - chr8_1:81807455-81807474 Msa1219060:intron 60.0%
! TCCTGGCTTGTGGTGACAGG+TGG - chr8_1:81807458-81807477 Msa1219060:intron 60.0%
TCCACCTGTCACCACAAGCC+AGG + chr8_1:81807462-81807481 None:intergenic 60.0%
CACTCACTTCCACCCTGGGC+CGG - chr8_1:81805079-81805098 Msa1219060:intron 65.0%
CCATAATCACCGGCCCAGGG+TGG + chr8_1:81805091-81805110 None:intergenic 65.0%
CCACCCTGGGCCGGTGATTA+TGG - chr8_1:81805088-81805107 Msa1219060:intron 65.0%
CCCTGGGCCGGTGATTATGG+AGG - chr8_1:81805091-81805110 Msa1219060:intron 65.0%
!! GGGTGCTGGCCTGAAGCTTG+TGG - chr8_1:81806070-81806089 Msa1219060:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 81802547 81808175 81802547 ID=Msa1219060;Name=Msa1219060
chr8_1 mRNA 81802547 81808175 81802547 ID=Msa1219060-mRNA-1;Parent=Msa1219060;Name=Msa1219060-mRNA-1;_AED=0.18;_eAED=0.18;_QI=288|0.9|0.90|1|0.7|0.72|11|497|599
chr8_1 exon 81802547 81802877 81802547 ID=Msa1219060-mRNA-1:exon:29016;Parent=Msa1219060-mRNA-1
chr8_1 exon 81802901 81803245 81802901 ID=Msa1219060-mRNA-1:exon:29015;Parent=Msa1219060-mRNA-1
chr8_1 exon 81803974 81804103 81803974 ID=Msa1219060-mRNA-1:exon:29014;Parent=Msa1219060-mRNA-1
chr8_1 exon 81804189 81804338 81804189 ID=Msa1219060-mRNA-1:exon:29013;Parent=Msa1219060-mRNA-1
chr8_1 exon 81804430 81804663 81804430 ID=Msa1219060-mRNA-1:exon:29012;Parent=Msa1219060-mRNA-1
chr8_1 exon 81804744 81804912 81804744 ID=Msa1219060-mRNA-1:exon:29011;Parent=Msa1219060-mRNA-1
chr8_1 exon 81805101 81805322 81805101 ID=Msa1219060-mRNA-1:exon:29010;Parent=Msa1219060-mRNA-1
chr8_1 exon 81805564 81805730 81805564 ID=Msa1219060-mRNA-1:exon:29009;Parent=Msa1219060-mRNA-1
chr8_1 exon 81805927 81806065 81805927 ID=Msa1219060-mRNA-1:exon:29008;Parent=Msa1219060-mRNA-1
chr8_1 exon 81806805 81807042 81806805 ID=Msa1219060-mRNA-1:exon:29007;Parent=Msa1219060-mRNA-1
chr8_1 exon 81807716 81808175 81807716 ID=Msa1219060-mRNA-1:exon:29006;Parent=Msa1219060-mRNA-1
chr8_1 five_prime_UTR 81807888 81808175 81807888 ID=Msa1219060-mRNA-1:five_prime_utr;Parent=Msa1219060-mRNA-1
chr8_1 CDS 81807716 81807887 81807716 ID=Msa1219060-mRNA-1:cds;Parent=Msa1219060-mRNA-1
chr8_1 CDS 81806805 81807042 81806805 ID=Msa1219060-mRNA-1:cds;Parent=Msa1219060-mRNA-1
chr8_1 CDS 81805927 81806065 81805927 ID=Msa1219060-mRNA-1:cds;Parent=Msa1219060-mRNA-1
chr8_1 CDS 81805564 81805730 81805564 ID=Msa1219060-mRNA-1:cds;Parent=Msa1219060-mRNA-1
chr8_1 CDS 81805101 81805322 81805101 ID=Msa1219060-mRNA-1:cds;Parent=Msa1219060-mRNA-1
chr8_1 CDS 81804744 81804912 81804744 ID=Msa1219060-mRNA-1:cds;Parent=Msa1219060-mRNA-1
chr8_1 CDS 81804430 81804663 81804430 ID=Msa1219060-mRNA-1:cds;Parent=Msa1219060-mRNA-1
chr8_1 CDS 81804189 81804338 81804189 ID=Msa1219060-mRNA-1:cds;Parent=Msa1219060-mRNA-1
chr8_1 CDS 81803974 81804103 81803974 ID=Msa1219060-mRNA-1:cds;Parent=Msa1219060-mRNA-1
chr8_1 CDS 81803067 81803245 81803067 ID=Msa1219060-mRNA-1:cds;Parent=Msa1219060-mRNA-1
chr8_1 three_prime_UTR 81802901 81803066 81802901 ID=Msa1219060-mRNA-1:three_prime_utr;Parent=Msa1219060-mRNA-1
chr8_1 three_prime_UTR 81802547 81802877 81802547 ID=Msa1219060-mRNA-1:three_prime_utr;Parent=Msa1219060-mRNA-1
Gene Sequence

>Msa1219060

ATGACGATAGTTTCACTCTTCCTAACTGCCACTAAACTCGCCGGAGCTTTAGTCACTCTCACTGTCGCCGCCAATGCATTTTCCTTCTCTCGTTTTCGCAACAAAAATCTTCGCCGTTTCACTTCCCCTATCGATGAATCCTCCGATACTCTCGCCGATTTCAACATTACCGAGAGTGTTGCCGGTGCTGAGCAGAAAGTAGATGCTTTGATGGGCTCTGCCACTGCTGATGGTGAGTCTCAACAAGCCATATCATCTGCACAACGAGGGCTTAAGGGTAACAAGAAGTCTCTTAAGGTAGCTATGGAGGCCATGATCAGAGGATTTGAGAAATACATGGAAGTAGATGGACAGGAAGGAGAAGAAGAACACATTCCTAATGTAACTGCTTGGCATAATGTTCCACATCCGGAGGAGAGATTAAGGTTTTGGTCTGATCCTGATACAGAACTAAAATTGGCCAAGGATACTGGTGTTACTGTTTTTCGTATGGGAATTGACTGGTCAAGAGTCATGCCTCATGAGCCAGTAAACAGCCTTAAAGAATCTGTCAACTATGCTGCATTGGAGCGCTATAAGTGGATTATCAATAGGGTTCGATCATATGGAATGAAGGTGATGCTCACTCTTTTTCATCACTCACTTCCACCCTGGGCCGGTGATTATGGAGGTTGGAAGCTGGAAAAGACAGTGGATTATTTCATGGATTTTACCAGGCTTGTTGTTGACAGTGTATCAGATTTAGTAGACTATTGGGTAACATTTAACGAGCCCCATGTCTTCTGTATGCTTACTTACTGTTCTGGAACCTGGCCTGGTGGACATCCTGATATGCTAGAGGCTGCTACTTCCGCACTTCCTACAGGTGTTTTCCAGCAGGCCATGCATTGGATATCTGTTGCACACTCAAAGGCATATGATTACATCCACGAACTCAGTAACTCATCAAATCAAATAGTTGGTGTCGCACATCATGTGTCGTTTATGCGACCCTATGGTCTGTTTGATATTGCTGCCGTTTCACTGGCTAATTCATTGAGTCTCTTCCCATTCATCGATGAAATATCCAAAAAGATGGACTTTATAGGCGTTAACTATTACGGCCAGGAAGCGATTTCGGGTGCTGGCCTGAAGCTTGTGGAAAATGATGAGTACAGTGAATCTGGACGTGGAGTATATCCTGATGGCTTATATCGCATGTTACTTCAGTTCCATGAAAGATACAAGCATCTAAATGTCCCTTTCATTATTGCTGAAAATGGAATTGCAGATGAGACTGATTTGATCCGCCGACCATATCTCTTGGAGCATTTACTTGCTGTTTATGCAGCTATGATCGAGGGTGTGCCTGTGCTTGGTTACCTCTTCTGGACTATTTCTGATAACTGGGAGTGGGCTGATGGATATGGTCCCAAGTTTGGACTTGTCGCAGTTGACCGAGCAAATAATCTTGCACGGATTCCTCGCCCTTCTTACCATCTGTTTTCTAAAGTTGTAAGTACCGGTAAAGTTACACACGATGATCGTGATAACGCTTGGAATGAACTTCAAAGAGCCGCTAAAGAGAAGAAGACAAGACCATTTTATCGGGCTGTGGACAAAAATGGTTTAATGTTAGCAGGTGGACTTGATGAACCCATACAGCGGCCTTATATAGAAAGAGATTGGCGGTTTGGTCATTATGAGATGGATGACCTCCAGGATTACTTAAGCCAATTCTCAAGATTCATTATTCAACGATTCTCCCTAAAAAGGAAAAAGAAATCTCAAAAGGAGCAATTAGTTCTGCACCCGCTTTGA

Protein sequence

>Msa1219060

MTIVSLFLTATKLAGALVTLTVAANAFSFSRFRNKNLRRFTSPIDESSDTLADFNITESVAGAEQKVDALMGSATADGESQQAISSAQRGLKGNKKSLKVAMEAMIRGFEKYMEVDGQEGEEEHIPNVTAWHNVPHPEERLRFWSDPDTELKLAKDTGVTVFRMGIDWSRVMPHEPVNSLKESVNYAALERYKWIINRVRSYGMKVMLTLFHHSLPPWAGDYGGWKLEKTVDYFMDFTRLVVDSVSDLVDYWVTFNEPHVFCMLTYCSGTWPGGHPDMLEAATSALPTGVFQQAMHWISVAHSKAYDYIHELSNSSNQIVGVAHHVSFMRPYGLFDIAAVSLANSLSLFPFIDEISKKMDFIGVNYYGQEAISGAGLKLVENDEYSESGRGVYPDGLYRMLLQFHERYKHLNVPFIIAENGIADETDLIRRPYLLEHLLAVYAAMIEGVPVLGYLFWTISDNWEWADGYGPKFGLVAVDRANNLARIPRPSYHLFSKVVSTGKVTHDDRDNAWNELQRAAKEKKTRPFYRAVDKNGLMLAGGLDEPIQRPYIERDWRFGHYEMDDLQDYLSQFSRFIIQRFSLKRKKKSQKEQLVLHPL*