AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0415200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0415200 MtrunA17_Chr3g0109101 92.881 295 20 1 1 294 1 295 0.0 541
Msa0415200 MtrunA17_Chr3g0109111 88.820 322 35 1 7 327 79 400 0.0 527
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0415200 AT3G02690.1 72.555 317 83 2 7 322 99 412 1.68e-154 439

Find 98 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTCGATGCTGCTTGCTTTC+AGG 0.034711 3_2:-61282145 Msa0415200:CDS
TATAGATTATGACTTGTTTA+TGG 0.122808 3_2:-61279311 Msa0415200:three_prime_UTR
TAATATCGCCGTTCTTCTTC+TGG 0.156426 3_2:-61282338 Msa0415200:CDS
ATACTTGCGGCTTTGCTATT+TGG 0.192263 3_2:-61281415 Msa0415200:CDS
ATTGGGAATGCTAGTGCTTT+TGG 0.223059 3_2:-61279578 Msa0415200:three_prime_UTR
AAATTGTCATGAACTCAAAT+TGG 0.247469 3_2:-61279596 Msa0415200:three_prime_UTR
CAACGATAGTTGAAGGGTTA+TGG 0.279629 3_2:-61282374 Msa0415200:CDS
GTCGATGCTGCTTGCTTTCA+GGG 0.294962 3_2:-61282144 Msa0415200:CDS
AGCATCGACGAGAGCAAATA+TGG 0.297028 3_2:+61282158 None:intergenic
TTCCTTCTGGCTTCCATGCT+TGG 0.297169 3_2:-61282191 Msa0415200:CDS
TATTTCAGGTTTCTGTATCT+TGG 0.302197 3_2:-61279763 Msa0415200:intron
AGAGGAAGGGCGTTTCCTTC+TGG 0.304509 3_2:-61282204 Msa0415200:CDS
AGAGAAAACTTCAGCTGGTT+TGG 0.310039 3_2:-61282103 Msa0415200:CDS
ATGGGAGCAACTTCTCACTA+TGG 0.345755 3_2:-61281029 Msa0415200:CDS
CATCTTCTTCTGCACTTAAG+AGG 0.346078 3_2:+61282427 None:intergenic
AATATCGCCGTTCTTCTTCT+GGG 0.346517 3_2:-61282337 Msa0415200:CDS
GGCGAGTCCATTGGAATTGT+TGG 0.358289 3_2:-61281394 Msa0415200:CDS
AGTTGCTCCCATCAATTGAT+AGG 0.369335 3_2:+61281040 None:intergenic
GAGAAAACTTCAGCTGGTTT+GGG 0.385919 3_2:-61282102 Msa0415200:CDS
CTTCTTCTGGGGCACTTCCA+TGG 0.396917 3_2:-61282325 Msa0415200:CDS
GGGCTTGTACTTGGTGTCAT+AGG 0.398978 3_2:-61281364 Msa0415200:CDS
TTACAGTTCAACTGATGTAT+TGG 0.404065 3_2:-61280599 Msa0415200:CDS
CGAAAATTGAGGCAAACATT+GGG 0.404211 3_2:+61280138 None:intergenic
TATTGCAGCTACAGTAATAC+TGG 0.409163 3_2:+61279708 None:intergenic
AACGATAGTTGAAGGGTTAT+GGG 0.412873 3_2:-61282373 Msa0415200:CDS
GGAGCTGCCGGGCTTGTACT+TGG 0.418936 3_2:-61281373 Msa0415200:CDS
ATTGGAATTGTTGGAGCTGC+CGG 0.419713 3_2:-61281385 Msa0415200:CDS
TTGCTATTTGGCGAGTCCAT+TGG 0.426917 3_2:-61281403 Msa0415200:CDS
AACAACGACCCTGCTGTAAG+TGG 0.430978 3_2:-61280634 Msa0415200:CDS
TGGCTTATCCATGCTTTATG+TGG 0.436416 3_2:+61282461 None:intergenic
CCGAAAATTGAGGCAAACAT+TGG 0.438271 3_2:+61280137 None:intergenic
ACCCATCCAGTTGCCATGAT+AGG 0.438828 3_2:+61280919 None:intergenic
AATTGTCATGAACTCAAATT+GGG 0.445021 3_2:-61279595 Msa0415200:three_prime_UTR
TTACCTTCCCTATCAATTGA+TGG 0.445495 3_2:-61281048 Msa0415200:CDS
TCTGATCCTATCATGGCAAC+TGG 0.460438 3_2:-61280925 Msa0415200:CDS
TTGCAGCATATGGTTATTGG+TGG 0.460764 3_2:-61280685 Msa0415200:intron
CATGATAGGATCAGAGTACT+TGG 0.465171 3_2:+61280933 None:intergenic
AACAATCTGTACAGGTGAAA+AGG 0.470799 3_2:+61279735 None:intergenic
TCGTTTCGTCTCATTCCTGC+CGG 0.471862 3_2:-61282255 Msa0415200:CDS
TTGGAATTGTTGGAGCTGCC+GGG 0.484733 3_2:-61281384 Msa0415200:CDS
AACTTCTCACTATGGGGAAG+TGG 0.486637 3_2:-61281021 Msa0415200:CDS
TTTGGAAGCGCTGTTAGCTA+TGG 0.497044 3_2:-61280556 Msa0415200:CDS
TCATTGCCAACGATAGTTGA+AGG 0.500413 3_2:-61282381 Msa0415200:CDS
CGTTTCGTCTCATTCCTGCC+GGG 0.504091 3_2:-61282254 Msa0415200:CDS
CAAGTACTCTGATCCTATCA+TGG 0.508310 3_2:-61280932 Msa0415200:CDS
TTAAGACTCCCACTTACAGC+AGG 0.509878 3_2:+61280625 None:intergenic
GGGTTAGAGAAAACTTCAGC+TGG 0.512891 3_2:-61282108 Msa0415200:CDS
TATGGGGAAGTGGGGAGATG+TGG 0.515222 3_2:-61281011 Msa0415200:CDS
TGGGAGCAACTTCTCACTAT+GGG 0.515852 3_2:-61281028 Msa0415200:CDS
TACCTTCCCTATCAATTGAT+GGG 0.518568 3_2:-61281047 Msa0415200:CDS
ATCCTATCATGGCAACTGGA+TGG 0.520007 3_2:-61280921 Msa0415200:CDS
AAATGTAAGTGAACTGAGCT+TGG 0.524209 3_2:+61280166 None:intergenic
TCCTATCATGGCAACTGGAT+GGG 0.527496 3_2:-61280920 Msa0415200:intron
TTGGCACTGTCATGGTTCGG+TGG 0.529695 3_2:-61280960 Msa0415200:CDS
TGGCACTGTCATGGTTCGGT+GGG 0.533959 3_2:-61280959 Msa0415200:CDS
AAAAGCAACAAGAAGGAACC+CGG 0.541215 3_2:+61282236 None:intergenic
ACTTCTCACTATGGGGAAGT+GGG 0.542735 3_2:-61281020 Msa0415200:CDS
CTGGCTCCAACAATCTGTAC+AGG 0.544488 3_2:+61279727 None:intergenic
ATATCGCCGTTCTTCTTCTG+GGG 0.550209 3_2:-61282336 Msa0415200:CDS
GCTTCTTGCAGCTCAGAGCA+TGG 0.554655 3_2:-61280986 Msa0415200:CDS
TTTGACAGTGGCTATACTTG+CGG 0.561743 3_2:-61281428 Msa0415200:CDS
CTCTTAAGTGCAGAAGAAGA+TGG 0.563214 3_2:-61282426 Msa0415200:CDS
GGTTAACTTTAGAAACACTT+CGG 0.564771 3_2:-61279680 Msa0415200:CDS
TACTGTAGCTGCAATATACA+TGG 0.565537 3_2:-61279701 Msa0415200:CDS
CAGTTGGCACTGTCATGGTT+CGG 0.567605 3_2:-61280963 Msa0415200:CDS
GTTGCTCCCATCAATTGATA+GGG 0.571292 3_2:+61281041 None:intergenic
CATAACCCTTCAACTATCGT+TGG 0.574957 3_2:+61282375 None:intergenic
GGCAGCTCCAACAATTCCAA+TGG 0.578419 3_2:+61281387 None:intergenic
GATGACTTTACTGCTACGCT+AGG 0.578531 3_2:-61279348 Msa0415200:three_prime_UTR
GCAAGTATAGCCACTGTCAA+AGG 0.578902 3_2:+61281430 None:intergenic
CTCATGAACCACATAAAGCA+TGG 0.581441 3_2:-61282469 None:intergenic
CATGGCAGTTGGCACTGTCA+TGG 0.583057 3_2:-61280968 Msa0415200:CDS
GCAACAAGAAGGAACCCGGC+AGG 0.583290 3_2:+61282240 None:intergenic
CATTGCCAACGATAGTTGAA+GGG 0.584619 3_2:-61282380 Msa0415200:CDS
GACGAGAGCAAATATGGCGA+TGG 0.586449 3_2:+61282164 None:intergenic
GCAGCTCAGAGCATGGCAGT+TGG 0.587376 3_2:-61280979 Msa0415200:CDS
AACCAGCAAAAGCAACAAGA+AGG 0.591823 3_2:+61282229 None:intergenic
TGATTCACAACCTTTGACAG+TGG 0.592362 3_2:-61281440 Msa0415200:CDS
TATGACACCAAGTACAAGCC+CGG 0.598392 3_2:+61281366 None:intergenic
CTCCCATCAATTGATAGGGA+AGG 0.603069 3_2:+61281045 None:intergenic
CACTTCTTTCATCGCCACCA+TGG 0.610773 3_2:+61282308 None:intergenic
AGCCAAGCATGGAAGCCAGA+AGG 0.612271 3_2:+61282189 None:intergenic
TGGCGATGGAGAGCCAAGCA+TGG 0.615881 3_2:+61282178 None:intergenic
TAAGAATCGCTAATGCCACA+AGG 0.616917 3_2:+61280656 None:intergenic
GAAGTGCCCCAGAAGAAGAA+CGG 0.628202 3_2:+61282330 None:intergenic
CTTCTGGGGCACTTCCATGG+TGG 0.634864 3_2:-61282322 Msa0415200:CDS
AAGAATCGCTAATGCCACAA+GGG 0.636088 3_2:+61280657 None:intergenic
GCAGTCTTACCCGAAAATTG+AGG 0.636414 3_2:+61280127 None:intergenic
GAAAATTGAGGCAAACATTG+GGG 0.640798 3_2:+61280139 None:intergenic
ATAGTTGAAGGGTTATGGGA+AGG 0.643808 3_2:-61282369 Msa0415200:CDS
ACAACGACCCTGCTGTAAGT+GGG 0.654735 3_2:-61280633 Msa0415200:CDS
AGAATCGCTAATGCCACAAG+GGG 0.656521 3_2:+61280658 None:intergenic
TAAGACTCCCACTTACAGCA+GGG 0.658809 3_2:+61280626 None:intergenic
CATAGGACTTGTGTTACTCG+AGG 0.662221 3_2:-61281347 Msa0415200:intron
CTTCTCACTATGGGGAAGTG+GGG 0.663161 3_2:-61281019 Msa0415200:CDS
AAAGAAGTGATTCCGAAATG+CGG 0.663568 3_2:-61282294 Msa0415200:CDS
GGGAGCAACTTCTCACTATG+GGG 0.688783 3_2:-61281027 Msa0415200:CDS
GAATCGCTAATGCCACAAGG+GGG 0.752839 3_2:+61280659 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTATTCTATTATTATTGTT+TGG - chr3_2:61279719-61279738 Msa0415200:CDS 15.0%
!! CTATTCTATTATTATTGTTT+GGG - chr3_2:61279720-61279739 Msa0415200:CDS 15.0%
!!! ACTTTTCTTTTTCTTTTAAA+CGG - chr3_2:61279982-61280001 Msa0415200:intron 15.0%
!! TAATATGACATATTCATTAT+GGG + chr3_2:61281504-61281523 None:intergenic 15.0%
!! CTAATACAATAAAATTTCTA+TGG + chr3_2:61282363-61282382 None:intergenic 15.0%
!! GTAGTAATAATGACTATATT+CGG - chr3_2:61279906-61279925 Msa0415200:intron 20.0%
!!! CTTTTCTTTTTCTTTTAAAC+GGG - chr3_2:61279983-61280002 Msa0415200:intron 20.0%
!!! ATTTTATAGAGTAATTTCAC+GGG + chr3_2:61280144-61280163 None:intergenic 20.0%
!!! CATTTTATAGAGTAATTTCA+CGG + chr3_2:61280145-61280164 None:intergenic 20.0%
!! TTTGATTAAGTTTAACCTAA+AGG - chr3_2:61280415-61280434 Msa0415200:intron 20.0%
!! AAAAGGATTATGCATATAAT+TGG - chr3_2:61280487-61280506 Msa0415200:intron 20.0%
!! ATATAATTGGAAGGATATTA+AGG - chr3_2:61280500-61280519 Msa0415200:intron 20.0%
!! TCAAAATTACAAAATCAACT+CGG + chr3_2:61280582-61280601 None:intergenic 20.0%
!!! TAGTATATAATAGAAGGTAT+TGG + chr3_2:61280629-61280648 None:intergenic 20.0%
!! ACTGAATAGTATATAATAGA+AGG + chr3_2:61280635-61280654 None:intergenic 20.0%
!! TAGTGAAATGATGATTATAT+GGG - chr3_2:61280885-61280904 Msa0415200:intron 20.0%
!! CTAATCGTTTAAAAAAAAAG+AGG - chr3_2:61280945-61280964 Msa0415200:CDS 20.0%
!! GTTTAAAAAAAAAGAGGAAA+GGG - chr3_2:61280951-61280970 Msa0415200:CDS 20.0%
!! AAATCTTCAAGTGTATAAAA+TGG + chr3_2:61281446-61281465 None:intergenic 20.0%
!! CTAATATGACATATTCATTA+TGG + chr3_2:61281505-61281524 None:intergenic 20.0%
!! CAATAAAATTATTATGTCAC+TGG + chr3_2:61281808-61281827 None:intergenic 20.0%
!!! CATTTTTATGTTTCTTTTTC+AGG - chr3_2:61281916-61281935 Msa0415200:intron 20.0%
!!! TTTTGATTAGTTGTTATATC+AGG - chr3_2:61282244-61282263 Msa0415200:CDS 20.0%
!!! AAACAATTTTCTCTTGTATA+AGG + chr3_2:61282340-61282359 None:intergenic 20.0%
!!! TATAGATTATGACTTGTTTA+TGG - chr3_2:61282419-61282438 Msa0415200:CDS 20.0%
! CTTATTTGAGGATATATACA+AGG + chr3_2:61279759-61279778 None:intergenic 25.0%
! ATATCCTCAAATAAGACTAT+AGG - chr3_2:61279764-61279783 Msa0415200:intron 25.0%
!!! ATTGATATTGCTGTTTTGTT+TGG - chr3_2:61280031-61280050 Msa0415200:intron 25.0%
!!! TTGATATTGCTGTTTTGTTT+GGG - chr3_2:61280032-61280051 Msa0415200:intron 25.0%
! AAAAGTTGCTGAGTTAAATT+TGG - chr3_2:61280202-61280221 Msa0415200:intron 25.0%
! AGGATATTAAGGATATGTTT+CGG - chr3_2:61280511-61280530 Msa0415200:intron 25.0%
!!! TATAATAGAAGGTATTGGTT+AGG + chr3_2:61280624-61280643 None:intergenic 25.0%
! GTAGTGAAATGATGATTATA+TGG - chr3_2:61280884-61280903 Msa0415200:intron 25.0%
! CGTTTAAAAAAAAAGAGGAA+AGG - chr3_2:61280950-61280969 Msa0415200:CDS 25.0%
! TTAAGAACTTTGTAGAAGTT+TGG - chr3_2:61280996-61281015 Msa0415200:CDS 25.0%
!! TCAATATACTGATTACAATG+TGG + chr3_2:61281412-61281431 None:intergenic 25.0%
!! CGAAAAAGTTATGATTTTGA+AGG + chr3_2:61281841-61281860 None:intergenic 25.0%
!!! AAAACATGTTAATTTGCTAG+TGG + chr3_2:61281885-61281904 None:intergenic 25.0%
!!! ACCTTTGTATACACATTTTT+TGG - chr3_2:61281939-61281958 Msa0415200:intron 25.0%
! ACCAAAAAATGTGTATACAA+AGG + chr3_2:61281943-61281962 None:intergenic 25.0%
!!! TGTATACACATTTTTTGGTT+TGG - chr3_2:61281944-61281963 Msa0415200:intron 25.0%
!!! ATTTTTTGGTTTGGTATTTC+AGG - chr3_2:61281953-61281972 Msa0415200:intron 25.0%
!!! TTCATGACAATTTTTTCGTT+GGG + chr3_2:61282127-61282146 None:intergenic 25.0%
! AAATTGTCATGAACTCAAAT+TGG - chr3_2:61282134-61282153 Msa0415200:CDS 25.0%
! AATTGTCATGAACTCAAATT+GGG - chr3_2:61282135-61282154 Msa0415200:CDS 25.0%
! TTTCTCTTGTATAAGGATTA+AGG + chr3_2:61282333-61282352 None:intergenic 25.0%
CGAAACGAAGAAACAAAAAA+AGG + chr3_2:61279463-61279482 None:intergenic 30.0%
!! TTCACCTATAGTCTTATTTG+AGG + chr3_2:61279771-61279790 None:intergenic 30.0%
CATACAATGTGCATTAGATA+AGG + chr3_2:61280102-61280121 None:intergenic 30.0%
CTTATCTAATGCACATTGTA+TGG - chr3_2:61280100-61280119 Msa0415200:intron 30.0%
GGATTATGCATATAATTGGA+AGG - chr3_2:61280491-61280510 Msa0415200:intron 30.0%
TTGAGATGTACAATTTCTCT+TGG - chr3_2:61280598-61280617 Msa0415200:CDS 30.0%
TTACAGTTCAACTGATGTAT+TGG - chr3_2:61281131-61281150 Msa0415200:intron 30.0%
! TTCTTTTACAGTGCAACTAA+AGG - chr3_2:61281201-61281220 Msa0415200:intron 30.0%
ATGAATGAAAATTCACTGCA+AGG + chr3_2:61281262-61281281 None:intergenic 30.0%
! ACTAAAGTAAGCTCAGTTTT+AGG - chr3_2:61281286-61281305 Msa0415200:intron 30.0%
GATTTAAACTACGTTCTTTG+AGG + chr3_2:61281327-61281346 None:intergenic 30.0%
! TATACTGATTACAATGTGGA+AGG + chr3_2:61281408-61281427 None:intergenic 30.0%
! ATATTCATTATGGGCTGATA+TGG + chr3_2:61281495-61281514 None:intergenic 30.0%
!!! TTGTTTTTGTGATGTATTGC+AGG - chr3_2:61281533-61281552 Msa0415200:intron 30.0%
CTTTAATTGTGAAGTCATTC+AGG - chr3_2:61281732-61281751 Msa0415200:intron 30.0%
!! TTTTTCGTAGCTTTTTTCAC+TGG - chr3_2:61281854-61281873 Msa0415200:intron 30.0%
!! TATTTCAGGTTTCTGTATCT+TGG - chr3_2:61281967-61281986 Msa0415200:intron 30.0%
! GGTTAACTTTAGAAACACTT+CGG - chr3_2:61282050-61282069 Msa0415200:intron 30.0%
!!! GTTCATGACAATTTTTTCGT+TGG + chr3_2:61282128-61282147 None:intergenic 30.0%
AACGATAGTTGAAGGGTTAT+GGG - chr3_2:61279357-61279376 Msa0415200:three_prime_UTR 35.0%
AAAGAAGTGATTCCGAAATG+CGG - chr3_2:61279436-61279455 Msa0415200:intron 35.0%
ACAAAAAAAGGACCGCATTT+CGG + chr3_2:61279451-61279470 None:intergenic 35.0%
GTGTGTCATATTGATAGAAC+TGG - chr3_2:61280171-61280190 Msa0415200:CDS 35.0%
! TATTGATAGAACTGGACTAG+AGG - chr3_2:61280179-61280198 Msa0415200:intron 35.0%
GACTATCTAGTGTGGATATA+TGG - chr3_2:61280256-61280275 Msa0415200:intron 35.0%
AGAACTAAGTCACTTCCTTT+AGG + chr3_2:61280433-61280452 None:intergenic 35.0%
!! AACTTTGGGTTGTGCATAAA+GGG + chr3_2:61280460-61280479 None:intergenic 35.0%
!! TAACTTTGGGTTGTGCATAA+AGG + chr3_2:61280461-61280480 None:intergenic 35.0%
!! TCCTTTTGACTGCTAACTTT+GGG + chr3_2:61280474-61280493 None:intergenic 35.0%
!! ATCCTTTTGACTGCTAACTT+TGG + chr3_2:61280475-61280494 None:intergenic 35.0%
TTACCTTCCCTATCAATTGA+TGG - chr3_2:61280682-61280701 Msa0415200:CDS 35.0%
TACCTTCCCTATCAATTGAT+GGG - chr3_2:61280683-61280702 Msa0415200:intron 35.0%
CCATATGCTGCAAAAGAAAT+AGG + chr3_2:61281038-61281057 None:intergenic 35.0%
!! CCTATTTCTTTTGCAGCATA+TGG - chr3_2:61281035-61281054 Msa0415200:CDS 35.0%
! CTTTTGCAGCATATGGTTAT+TGG - chr3_2:61281042-61281061 Msa0415200:CDS 35.0%
TTCCAAAAATGGACATGTAG+AGG + chr3_2:61281161-61281180 None:intergenic 35.0%
AACGTAGTTTAAATCTCCAC+CGG - chr3_2:61281332-61281351 Msa0415200:intron 35.0%
! TGATACTTTTACAACCATCC+CGG + chr3_2:61281354-61281373 None:intergenic 35.0%
! TGAACCATTTTGGATCAAAG+TGG + chr3_2:61281383-61281402 None:intergenic 35.0%
AAATGTAAGTGAACTGAGCT+TGG + chr3_2:61281567-61281586 None:intergenic 35.0%
GAAAATTGAGGCAAACATTG+GGG + chr3_2:61281594-61281613 None:intergenic 35.0%
CGAAAATTGAGGCAAACATT+GGG + chr3_2:61281595-61281614 None:intergenic 35.0%
! CCAATGTTTGCCTCAATTTT+CGG - chr3_2:61281593-61281612 Msa0415200:intron 35.0%
! CAATGTTTGCCTCAATTTTC+GGG - chr3_2:61281594-61281613 Msa0415200:intron 35.0%
AACAATCTGTACAGGTGAAA+AGG + chr3_2:61281998-61282017 None:intergenic 35.0%
! TTTTCACCTGTACAGATTGT+TGG - chr3_2:61281997-61282016 Msa0415200:intron 35.0%
TATTGCAGCTACAGTAATAC+TGG + chr3_2:61282025-61282044 None:intergenic 35.0%
TACTGTAGCTGCAATATACA+TGG - chr3_2:61282029-61282048 Msa0415200:intron 35.0%
! TTACATAGTCAGTTTTCTGC+TGG - chr3_2:61282087-61282106 Msa0415200:intron 35.0%
TTAAGGATTGTGTTCTACTC+TGG + chr3_2:61282316-61282335 None:intergenic 35.0%
!!! CTTAAGAGGCACTCTTTTAC+TGG + chr3_2:61279292-61279311 None:intergenic 40.0%
CATCTTCTTCTGCACTTAAG+AGG + chr3_2:61279306-61279325 None:intergenic 40.0%
CTCTTAAGTGCAGAAGAAGA+TGG - chr3_2:61279304-61279323 Msa0415200:three_prime_UTR 40.0%
TCATTGCCAACGATAGTTGA+AGG - chr3_2:61279349-61279368 Msa0415200:three_prime_UTR 40.0%
CATTGCCAACGATAGTTGAA+GGG - chr3_2:61279350-61279369 Msa0415200:three_prime_UTR 40.0%
CATAACCCTTCAACTATCGT+TGG + chr3_2:61279358-61279377 None:intergenic 40.0%
CAACGATAGTTGAAGGGTTA+TGG - chr3_2:61279356-61279375 Msa0415200:three_prime_UTR 40.0%
ATAGTTGAAGGGTTATGGGA+AGG - chr3_2:61279361-61279380 Msa0415200:three_prime_UTR 40.0%
TAATATCGCCGTTCTTCTTC+TGG - chr3_2:61279392-61279411 Msa0415200:intron 40.0%
AATATCGCCGTTCTTCTTCT+GGG - chr3_2:61279393-61279412 Msa0415200:intron 40.0%
AAAAGCAACAAGAAGGAACC+CGG + chr3_2:61279497-61279516 None:intergenic 40.0%
!!! TTCCTTCTTGTTGCTTTTGC+TGG - chr3_2:61279499-61279518 Msa0415200:three_prime_UTR 40.0%
AACCAGCAAAAGCAACAAGA+AGG + chr3_2:61279504-61279523 None:intergenic 40.0%
!!! TTTTGCTGGTTCTAGAGGAA+GGG - chr3_2:61279513-61279532 Msa0415200:three_prime_UTR 40.0%
AGAGAAAACTTCAGCTGGTT+TGG - chr3_2:61279627-61279646 Msa0415200:three_prime_UTR 40.0%
! GAGAAAACTTCAGCTGGTTT+GGG - chr3_2:61279628-61279647 Msa0415200:three_prime_UTR 40.0%
CTTGCTTTGACTATCTAGTG+TGG - chr3_2:61280248-61280267 Msa0415200:intron 40.0%
ATCTAGTGTGGATATATGGC+AGG - chr3_2:61280260-61280279 Msa0415200:intron 40.0%
TGATTCACAACCTTTGACAG+TGG - chr3_2:61280290-61280309 Msa0415200:intron 40.0%
TTTGACAGTGGCTATACTTG+CGG - chr3_2:61280302-61280321 Msa0415200:intron 40.0%
!! ATACTTGCGGCTTTGCTATT+TGG - chr3_2:61280315-61280334 Msa0415200:intron 40.0%
ACCCAAAGTTAGCAGTCAAA+AGG - chr3_2:61280470-61280489 Msa0415200:intron 40.0%
TATTTCTTGGTTGTGCACAC+TGG + chr3_2:61280554-61280573 None:intergenic 40.0%
CAACTCGGCAATGTATTTCT+TGG + chr3_2:61280567-61280586 None:intergenic 40.0%
ATTCAGTAATGCAGCACTAC+TGG - chr3_2:61280648-61280667 Msa0415200:CDS 40.0%
GTTGCTCCCATCAATTGATA+GGG + chr3_2:61280692-61280711 None:intergenic 40.0%
AGTTGCTCCCATCAATTGAT+AGG + chr3_2:61280693-61280712 None:intergenic 40.0%
! CATGATAGGATCAGAGTACT+TGG + chr3_2:61280800-61280819 None:intergenic 40.0%
CAAGTACTCTGATCCTATCA+TGG - chr3_2:61280798-61280817 Msa0415200:intron 40.0%
TTGCAGCATATGGTTATTGG+TGG - chr3_2:61281045-61281064 Msa0415200:CDS 40.0%
AAGAATCGCTAATGCCACAA+GGG + chr3_2:61281076-61281095 None:intergenic 40.0%
TAAGAATCGCTAATGCCACA+AGG + chr3_2:61281077-61281096 None:intergenic 40.0%
! CTCCTCTACATGTCCATTTT+TGG - chr3_2:61281156-61281175 Msa0415200:intron 40.0%
!! CTACGTTCTTTGAGGTTACA+AGG + chr3_2:61281319-61281338 None:intergenic 40.0%
ACGTAGTTTAAATCTCCACC+GGG - chr3_2:61281333-61281352 Msa0415200:intron 40.0%
!! AGTGCCACTTTGATCCAAAA+TGG - chr3_2:61281376-61281395 Msa0415200:CDS 40.0%
CCGAAAATTGAGGCAAACAT+TGG + chr3_2:61281596-61281615 None:intergenic 40.0%
! ATTGGGAATGCTAGTGCTTT+TGG - chr3_2:61282152-61282171 Msa0415200:CDS 40.0%
! AATGCTAGTGCTTTTGGACA+GGG - chr3_2:61282158-61282177 Msa0415200:CDS 40.0%
ATATCGCCGTTCTTCTTCTG+GGG - chr3_2:61279394-61279413 Msa0415200:intron 45.0%
!!! GTTGCTTTTGCTGGTTCTAG+AGG - chr3_2:61279508-61279527 Msa0415200:three_prime_UTR 45.0%
!!! CTTTTGCTGGTTCTAGAGGA+AGG - chr3_2:61279512-61279531 Msa0415200:three_prime_UTR 45.0%
!! AGCATCGACGAGAGCAAATA+TGG + chr3_2:61279575-61279594 None:intergenic 45.0%
! TTTCAGGGTTTTCTCGCTGA+AGG - chr3_2:61279601-61279620 Msa0415200:three_prime_UTR 45.0%
! TTCAGGGTTTTCTCGCTGAA+GGG - chr3_2:61279602-61279621 Msa0415200:three_prime_UTR 45.0%
GGGTTAGAGAAAACTTCAGC+TGG - chr3_2:61279622-61279641 Msa0415200:three_prime_UTR 45.0%
GCAAGTATAGCCACTGTCAA+AGG + chr3_2:61280303-61280322 None:intergenic 45.0%
!! TTGCTATTTGGCGAGTCCAT+TGG - chr3_2:61280327-61280346 Msa0415200:intron 45.0%
ATTGGAATTGTTGGAGCTGC+CGG - chr3_2:61280345-61280364 Msa0415200:intron 45.0%
TATGACACCAAGTACAAGCC+CGG + chr3_2:61280367-61280386 None:intergenic 45.0%
! CATAGGACTTGTGTTACTCG+AGG - chr3_2:61280383-61280402 Msa0415200:intron 45.0%
CTCCCATCAATTGATAGGGA+AGG + chr3_2:61280688-61280707 None:intergenic 45.0%
ATGGGAGCAACTTCTCACTA+TGG - chr3_2:61280701-61280720 Msa0415200:intron 45.0%
TGGGAGCAACTTCTCACTAT+GGG - chr3_2:61280702-61280721 Msa0415200:intron 45.0%
AACTTCTCACTATGGGGAAG+TGG - chr3_2:61280709-61280728 Msa0415200:intron 45.0%
ACTTCTCACTATGGGGAAGT+GGG - chr3_2:61280710-61280729 Msa0415200:intron 45.0%
TCTGATCCTATCATGGCAAC+TGG - chr3_2:61280805-61280824 Msa0415200:intron 45.0%
ATCCTATCATGGCAACTGGA+TGG - chr3_2:61280809-61280828 Msa0415200:intron 45.0%
TCCTATCATGGCAACTGGAT+GGG - chr3_2:61280810-61280829 Msa0415200:intron 45.0%
! AAGAGGAAAGGGTGTGTGAA+AGG - chr3_2:61280962-61280981 Msa0415200:CDS 45.0%
AGAATCGCTAATGCCACAAG+GGG + chr3_2:61281075-61281094 None:intergenic 45.0%
TAAGACTCCCACTTACAGCA+GGG + chr3_2:61281107-61281126 None:intergenic 45.0%
TTAAGACTCCCACTTACAGC+AGG + chr3_2:61281108-61281127 None:intergenic 45.0%
GCTAACAGCGCTTCCAAAAA+TGG + chr3_2:61281172-61281191 None:intergenic 45.0%
!! TTTGGAAGCGCTGTTAGCTA+TGG - chr3_2:61281174-61281193 Msa0415200:intron 45.0%
AGTTTAAATCTCCACCGGGA+TGG - chr3_2:61281337-61281356 Msa0415200:intron 45.0%
! TACTTTTACAACCATCCCGG+TGG + chr3_2:61281351-61281370 None:intergenic 45.0%
GCAGTCTTACCCGAAAATTG+AGG + chr3_2:61281606-61281625 None:intergenic 45.0%
! TGCGACTCTTTTCCATCACT+AGG + chr3_2:61281628-61281647 None:intergenic 45.0%
! TAGTGATGGAAAAGAGTCGC+AGG - chr3_2:61281627-61281646 Msa0415200:intron 45.0%
! GAATGCTAGTGCTTTTGGAC+AGG - chr3_2:61282157-61282176 Msa0415200:CDS 45.0%
GATGACTTTACTGCTACGCT+AGG - chr3_2:61282382-61282401 Msa0415200:CDS 45.0%
! GAAGTGCCCCAGAAGAAGAA+CGG + chr3_2:61279403-61279422 None:intergenic 50.0%
CACTTCTTTCATCGCCACCA+TGG + chr3_2:61279425-61279444 None:intergenic 50.0%
TCGTTTCGTCTCATTCCTGC+CGG - chr3_2:61279475-61279494 Msa0415200:three_prime_UTR 50.0%
!! TTCCTTCTGGCTTCCATGCT+TGG - chr3_2:61279539-61279558 Msa0415200:three_prime_UTR 50.0%
GACGAGAGCAAATATGGCGA+TGG + chr3_2:61279569-61279588 None:intergenic 50.0%
! GTCGATGCTGCTTGCTTTCA+GGG - chr3_2:61279586-61279605 Msa0415200:three_prime_UTR 50.0%
GGCGAGTCCATTGGAATTGT+TGG - chr3_2:61280336-61280355 Msa0415200:intron 50.0%
GGCAGCTCCAACAATTCCAA+TGG + chr3_2:61280346-61280365 None:intergenic 50.0%
TTGGAATTGTTGGAGCTGCC+GGG - chr3_2:61280346-61280365 Msa0415200:intron 50.0%
!! GGGCTTGTACTTGGTGTCAT+AGG - chr3_2:61280366-61280385 Msa0415200:intron 50.0%
GGGAGCAACTTCTCACTATG+GGG - chr3_2:61280703-61280722 Msa0415200:intron 50.0%
CTTCTCACTATGGGGAAGTG+GGG - chr3_2:61280711-61280730 Msa0415200:intron 50.0%
CAGTTGGCACTGTCATGGTT+CGG - chr3_2:61280767-61280786 Msa0415200:intron 50.0%
ACCCATCCAGTTGCCATGAT+AGG + chr3_2:61280814-61280833 None:intergenic 50.0%
GAATCGCTAATGCCACAAGG+GGG + chr3_2:61281074-61281093 None:intergenic 50.0%
AACAACGACCCTGCTGTAAG+TGG - chr3_2:61281096-61281115 Msa0415200:intron 50.0%
ACAACGACCCTGCTGTAAGT+GGG - chr3_2:61281097-61281116 Msa0415200:intron 50.0%
!! GTGGAAGGCGTGAACCATTT+TGG + chr3_2:61281393-61281412 None:intergenic 50.0%
CTGGCTCCAACAATCTGTAC+AGG + chr3_2:61282006-61282025 None:intergenic 50.0%
! TAGTGCTTTTGGACAGGGTG+AGG - chr3_2:61282163-61282182 Msa0415200:CDS 50.0%
!! CTTCTTCTGGGGCACTTCCA+TGG - chr3_2:61279405-61279424 Msa0415200:intron 55.0%
CGTTTCGTCTCATTCCTGCC+GGG - chr3_2:61279476-61279495 Msa0415200:three_prime_UTR 55.0%
!! AGAGGAAGGGCGTTTCCTTC+TGG - chr3_2:61279526-61279545 Msa0415200:three_prime_UTR 55.0%
AGCCAAGCATGGAAGCCAGA+AGG + chr3_2:61279544-61279563 None:intergenic 55.0%
! CGTCGATGCTGCTTGCTTTC+AGG - chr3_2:61279585-61279604 Msa0415200:three_prime_UTR 55.0%
TATGGGGAAGTGGGGAGATG+TGG - chr3_2:61280719-61280738 Msa0415200:intron 55.0%
GCTTCTTGCAGCTCAGAGCA+TGG - chr3_2:61280744-61280763 Msa0415200:intron 55.0%
CATGGCAGTTGGCACTGTCA+TGG - chr3_2:61280762-61280781 Msa0415200:intron 55.0%
! TTGGCACTGTCATGGTTCGG+TGG - chr3_2:61280770-61280789 Msa0415200:intron 55.0%
!! TGGCACTGTCATGGTTCGGT+GGG - chr3_2:61280771-61280790 Msa0415200:intron 55.0%
! TATTGGTGGTCTCCCCCTTG+TGG - chr3_2:61281059-61281078 Msa0415200:intron 55.0%
CGGGTAAGACTGCCTAGTGA+TGG - chr3_2:61281613-61281632 Msa0415200:intron 55.0%
!! CTTCTGGGGCACTTCCATGG+TGG - chr3_2:61279408-61279427 Msa0415200:intron 60.0%
GCAACAAGAAGGAACCCGGC+AGG + chr3_2:61279493-61279512 None:intergenic 60.0%
TGGCGATGGAGAGCCAAGCA+TGG + chr3_2:61279555-61279574 None:intergenic 60.0%
GCAGCTCAGAGCATGGCAGT+TGG - chr3_2:61280751-61280770 Msa0415200:intron 60.0%
GGAGCTGCCGGGCTTGTACT+TGG - chr3_2:61280357-61280376 Msa0415200:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 61279271 61282481 61279271 ID=Msa0415200;Name=Msa0415200
chr3_2 mRNA 61279271 61282481 61279271 ID=Msa0415200-mRNA-1;Parent=Msa0415200;Name=Msa0415200-mRNA-1;_AED=0.35;_eAED=0.35;_QI=9|1|1|1|0.83|0.71|7|341|327
chr3_2 exon 61279271 61279384 61279271 ID=Msa0415200-mRNA-1:exon:12964;Parent=Msa0415200-mRNA-1
chr3_2 exon 61279448 61279777 61279448 ID=Msa0415200-mRNA-1:exon:12963;Parent=Msa0415200-mRNA-1
chr3_2 exon 61280137 61280197 61280137 ID=Msa0415200-mRNA-1:exon:12962;Parent=Msa0415200-mRNA-1
chr3_2 exon 61280530 61280701 61280530 ID=Msa0415200-mRNA-1:exon:12961;Parent=Msa0415200-mRNA-1
chr3_2 exon 61280921 61281070 61280921 ID=Msa0415200-mRNA-1:exon:12960;Parent=Msa0415200-mRNA-1
chr3_2 exon 61281348 61281470 61281348 ID=Msa0415200-mRNA-1:exon:12959;Parent=Msa0415200-mRNA-1
chr3_2 exon 61282098 61282481 61282098 ID=Msa0415200-mRNA-1:exon:12958;Parent=Msa0415200-mRNA-1
chr3_2 five_prime_UTR 61282473 61282481 61282473 ID=Msa0415200-mRNA-1:five_prime_utr;Parent=Msa0415200-mRNA-1
chr3_2 CDS 61282098 61282472 61282098 ID=Msa0415200-mRNA-1:cds;Parent=Msa0415200-mRNA-1
chr3_2 CDS 61281348 61281470 61281348 ID=Msa0415200-mRNA-1:cds;Parent=Msa0415200-mRNA-1
chr3_2 CDS 61280921 61281070 61280921 ID=Msa0415200-mRNA-1:cds;Parent=Msa0415200-mRNA-1
chr3_2 CDS 61280530 61280701 61280530 ID=Msa0415200-mRNA-1:cds;Parent=Msa0415200-mRNA-1
chr3_2 CDS 61280137 61280197 61280137 ID=Msa0415200-mRNA-1:cds;Parent=Msa0415200-mRNA-1
chr3_2 CDS 61279675 61279777 61279675 ID=Msa0415200-mRNA-1:cds;Parent=Msa0415200-mRNA-1
chr3_2 three_prime_UTR 61279448 61279674 61279448 ID=Msa0415200-mRNA-1:three_prime_utr;Parent=Msa0415200-mRNA-1
chr3_2 three_prime_UTR 61279271 61279384 61279271 ID=Msa0415200-mRNA-1:three_prime_utr;Parent=Msa0415200-mRNA-1
Gene Sequence

>Msa0415200

ATGGATAAGCCAGTAAAAGAGTGCCTCTTAAGTGCAGAAGAAGATGGAAAAGCAAGTGACAAAGATGAATCATTGCCAACGATAGTTGAAGGGTTATGGGAAGGTGCTGTGTTAATATCGCCGTTCTTCTTCTGGGGCACTTCCATGGTGGCGATGAAAGAAGTGATTCCGAAATGCGGTCCTTTTTTTGTTTCTTCGTTTCGTCTCATTCCTGCCGGGTTCCTTCTTGTTGCTTTTGCTGGTTCTAGAGGAAGGGCGTTTCCTTCTGGCTTCCATGCTTGGCTCTCCATCGCCATATTTGCTCTCGTCGATGCTGCTTGCTTTCAGGGTTTTCTCGCTGAAGGGTTAGAGAAAACTTCAGCTGGTTTGGGCAGTGTTATTATTGATTCACAACCTTTGACAGTGGCTATACTTGCGGCTTTGCTATTTGGCGAGTCCATTGGAATTGTTGGAGCTGCCGGGCTTGTACTTGGTGTCATAGGACTTGTGTTACTCGAGTTACCTTCCCTATCAATTGATGGGAGCAACTTCTCACTATGGGGAAGTGGGGAGATGTGGATGCTTCTTGCAGCTCAGAGCATGGCAGTTGGCACTGTCATGGTTCGGTGGGTCTCCAAGTACTCTGATCCTATCATGGCAACTGGATGGCATATGGTTATTGGTGGTCTCCCCCTTGTGGCATTAGCGATTCTTAACAACGACCCTGCTGTAAGTGGGAGTCTTAAAGATTACAGTTCAACTGATGTATTGGCACTCCTCTACATGTCCATTTTTGGAAGCGCTGTTAGCTATGGTGTGTTCTTTTACAGTGCAACTAAAGGTAGCTTGACCAAGCTCAGTTCACTTACATTTCTAACCCCAATGTTTGCCTCAATTTTCGGGTTTCTGTATCTTGGTGAGACCTTTTCACCTGTACAGATTGTTGGAGCCAGTATTACTGTAGCTGCAATATACATGGTTAACTTTAGAAACACTTCGGAATGA

Protein sequence

>Msa0415200

MDKPVKECLLSAEEDGKASDKDESLPTIVEGLWEGAVLISPFFFWGTSMVAMKEVIPKCGPFFVSSFRLIPAGFLLVAFAGSRGRAFPSGFHAWLSIAIFALVDAACFQGFLAEGLEKTSAGLGSVIIDSQPLTVAILAALLFGESIGIVGAAGLVLGVIGLVLLELPSLSIDGSNFSLWGSGEMWMLLAAQSMAVGTVMVRWVSKYSDPIMATGWHMVIGGLPLVALAILNNDPAVSGSLKDYSSTDVLALLYMSIFGSAVSYGVFFYSATKGSLTKLSSLTFLTPMFASIFGFLYLGETFSPVQIVGASITVAAIYMVNFRNTSE*